Computationally mined microsatellites in chloroplast genome of Pellia endiviifolia

The availability of organelle genome sequences of bryophytes provides opportunity to mine this data. Therefore in this study microsatellites in chloroplast genome sequence of Pellia endiviifolia (Accession number: NC_019
The availability of organelle genome sequences of bryophytes provides opportunity to mine this data. Therefore in this study microsatellites in chloroplast genome sequence of Pellia endiviifolia (Accession number: NC_019628), downloaded from the National Center for Biotechnology Information (NCBI) in fasta format, were identified. The sequence was mined with the help of MISA, a Perl script, to detect microsatellites. In total, 16 perfect microsatellites were identified in 120.546 kb sequence mined. An average length of 14.94 bp was calculated for mined microsatellites with a density of 1 SSR/7.09 kb. Depending on the repeat units, the length of microsatellites ranged from 12 to 18 bp. Tetranucleotides (7, 43.75%) were the most frequent repeat type, followed by mononucleotide (3, 18.75%) repeats. Dinucleotide, trinucleotide and pentanucleotide repeats were found with equal frequency (2, 12.5%). Interestingly, hexanucleotide repeats were completely absent in chloroplast genome of Pellia endiviifolia. 
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Metadaten
Author:Asheesh Shanker
URN:urn:nbn:de:hebis:30:3-353326
Parent Title (German):199
Series (Serial Number):Archive for Bryology (199)
Publisher:Universität Bonn, Arbeitsgruppe Bryologie
Place of publication:Bonn
Document Type:Periodical Parts
Language:English
Year of Completion:2014
Year of first Publication:2014
Publishing Institution:Universitätsbibliothek Johann Christian Senckenberg
Release Date:2015/01/12
Tag:genome sequences
Pagenumber:5
HeBIS PPN:366877097
Dewey Decimal Classification:580 Pflanzen (Botanik)
Sammlungen:Sondersammelgebiets-Volltexte
Licence (German):License Logo Veröffentlichungsvertrag für Publikationen

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