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Evolutionary history of the p53 family DNA-binding domain: insights from an Alvinella pompejana homolog

  • The extremophile Alvinella pompejana, an annelid worm living on the edge of hydrothermal vents in the Pacific Ocean, is an excellent model system for studying factors that govern protein stability. Low intrinsic stability is a crucial factor for the susceptibility of the transcription factor p53 to inactivating mutations in human cancer. Understanding its molecular basis may facilitate the design of novel therapeutic strategies targeting mutant p53. By analyzing expressed sequence tag (EST) data, we discovered a p53 family gene in A. pompejana. Protein crystallography and biophysical studies showed that it has a p53/p63-like DNA-binding domain (DBD) that is more thermostable than all vertebrate p53 DBDs tested so far, but not as stable as that of human p63. We also identified features associated with its increased thermostability. In addition, the A. pompejana homolog shares DNA-binding properties with human p53 family DBDs, despite its evolutionary distance, consistent with a potential role in maintaining genome integrity. Through extensive structural and phylogenetic analyses, we could further trace key evolutionary events that shaped the structure, stability, and function of the p53 family DBD over time, leading to a potent but vulnerable tumor suppressor in humans.
Metadaten
Verfasserangaben:Qiang Zhang, Dimitrios-Ilias BalourdasORCiD, Bruno BaronORCiD, Alon SenitzkiORCiD, Tali E. HaranORCiD, Klas G. WimanORCiD, Thierry SoussiORCiD, Andreas C. JörgerORCiDGND
URN:urn:nbn:de:hebis:30:3-695238
DOI:https://doi.org/10.1038/s41419-022-04653-8
ISSN:2041-4889
Titel des übergeordneten Werkes (Englisch):Cell death & disease
Verlag:Nature Publishing Group
Verlagsort:London [u.a.]
Dokumentart:Wissenschaftlicher Artikel
Sprache:Englisch
Datum der Veröffentlichung (online):07.03.2022
Datum der Erstveröffentlichung:07.03.2022
Veröffentlichende Institution:Universitätsbibliothek Johann Christian Senckenberg
Datum der Freischaltung:23.06.2023
Freies Schlagwort / Tag:DNA damage response; Protein folding; Transcription factors; Tumour-suppressor proteins; X-ray crystallography
Jahrgang:13
Ausgabe / Heft:art. 214
Aufsatznummer:214
Seitenzahl:11
Erste Seite:1
Letzte Seite:11
Bemerkung:
Open Access funding enabled and organized by Projekt DEAL.
Bemerkung:
We are also grateful for support by the SGC, a registered charity (no: 1097737) that receives funds from AbbVie, Bayer AG, Boehringer Ingelheim, Canada Foundation for Innovation, Eshelman Institute for Innovation, Genentech, Genome Canada through Ontario Genomics Institute [OGI-196], EU/EFPIA/OICR/McGill/KTH/Diamond, Innovative Medicines Initiative 2 Joint Undertaking [EUbOPEN grant 875510], Janssen, Merck KGaA (aka EMD in Canada and US), Merck & Co (aka MSD outside Canada and US), Pfizer, São Paulo Research Foundation-FAPESP, Takeda and Wellcome [106169/ZZ14/Z].
Bemerkung:
Data availability
The coordinates and structure factors of the Alvinella pompejana p53 homolog DBD were deposited in the Protein Data Bank under accession code 7PC6.
HeBIS-PPN:510030823
Institute:Biochemie, Chemie und Pharmazie
Fachübergreifende Einrichtungen / Buchmann Institut für Molekulare Lebenswissenschaften (BMLS)
DDC-Klassifikation:5 Naturwissenschaften und Mathematik / 57 Biowissenschaften; Biologie / 570 Biowissenschaften; Biologie
6 Technik, Medizin, angewandte Wissenschaften / 61 Medizin und Gesundheit / 610 Medizin und Gesundheit
Sammlungen:Universitätspublikationen
Lizenz (Deutsch):License LogoCreative Commons - CC BY - Namensnennung 4.0 International