racoon_clip – a complete pipeline for single-nucleotide analyses of iCLIP and eCLIP data
- Here, we introduce racoon_clip, a sustainable and fully automated pipeline for the complete processing of iCLIP and eCLIP data to extract RNA binding signal at single-nucleotide resolution. racoon_clip is easy to install and execute, with multiple pre-settings and fully customizable parameters, and outputs a conclusive summary report with visualizations and statistics for all analysis steps.
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| Author: | Melina KlostermannORCiD, Katharina ZarnackORCiDGND |
|---|---|
| URN: | urn:nbn:de:hebis:30:3-830766 |
| URL: | https://www.biorxiv.org/content/10.1101/2024.02.27.582237v1 |
| DOI: | https://doi.org/10.1101/2024.02.27.582237 |
| Parent Title (English): | bioRxiv |
| Publisher: | bioRxiv |
| Document Type: | Preprint |
| Language: | English |
| Date of Publication (online): | 2024/03/01 |
| Date of first Publication: | 2024/03/01 |
| Publishing Institution: | Universitätsbibliothek Johann Christian Senckenberg |
| Release Date: | 2024/03/04 |
| Issue: | 2024.02.27.582237 Version 1 |
| Edition: | Version 1 |
| Page Number: | 12 |
| HeBIS-PPN: | 516988921 |
| Institutes: | Fachübergreifende Einrichtungen / Buchmann Institut für Molekulare Lebenswissenschaften (BMLS) |
| Dewey Decimal Classification: | 5 Naturwissenschaften und Mathematik / 57 Biowissenschaften; Biologie / 570 Biowissenschaften; Biologie |
| Sammlungen: | Universitätspublikationen |
| Licence (German): |  Creative Commons - CC BY-NC - Namensnennung - Nicht kommerziell 4.0 International |
