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- Zug in den Süden : wohin fliegen Große Brachvögel vom badischen Oberrhein nach der Brutzeit? (2009)
- Die Mauser- und Überwinterungsgebiete der süddeutschen Brutvögel des Großen Brachvogels liegen an der Atlantikküste Frankreichs und der Iberischen Halbinsel, individuelle Unterschiede sowie Populationsunterschiede sind jedoch nicht bekannt. Daher wurde in einem Pilotversuch am 20. Mai 2008 ein brütendes Weibchen in einem Brutgebiet am badischen Oberrhein mit einem Satellitensender versehen. Das Weibchen zog am 8. Juni 2008 vermutlich in einem Direktflug von 1020 km in west-süd-westlicher Richtung an die kantabrische Atlantikküste. Signale wurden bis zum 9. Oktober 2008 empfangen.
- The activation mechanism of Irga6, an interferon-inducible GTPase contributing to mouse resistance against Toxoplasma gondii (2011)
- Background: The interferon-inducible immunity-related GTPases (IRG proteins/p47 GTPases) are a distinctive family of GTPases that function as powerful cell-autonomous resistance factors. The IRG protein, Irga6 (IIGP1), participates in the disruption of the vacuolar membrane surrounding the intracellular parasite, Toxoplasma gondii, through which it communicates with its cellular hosts. Some aspects of the protein's behaviour have suggested a dynamin-like molecular mode of action, in that the energy released by GTP hydrolysis is transduced into mechanical work that results in deformation and ultimately rupture of the vacuolar membrane. Results: Irga6 forms GTP-dependent oligomers in vitro and thereby activates hydrolysis of the GTP substrate. In this study we define the catalytic G-domain interface by mutagenesis and present a structural model, of how GTP hydrolysis is activated in Irga6 complexes, based on the substrate-twinning reaction mechanism of the signal recognition particle (SRP) and its receptor (SRalpha). In conformity with this model, we show that the bound nucleotide is part of the catalytic interface and that the 3'hydroxyl of the GTP ribose bound to each subunit is essential for trans-activation of hydrolysis of the GTP bound to the other subunit. We show that both positive and negative regulatory interactions between IRG proteins occur via the catalytic interface. Furthermore, mutations that disrupt the catalytic interface also prevent Irga6 from accumulating on the parasitophorous vacuole membrane of T. gondii, showing that GTP-dependent Irga6 activation is an essential component of the resistance mechanism. Conclusions: The catalytic interface of Irga6 defined in the present experiments can probably be used as a paradigm for the nucleotide-dependent interactions of all members of the large family of IRG GTPases, both activating and regulatory. Understanding the activation mechanism of Irga6 will help to explain the mechanism by which IRG proteins exercise their resistance function. We find no support from sequence or G-domain structure for the idea that IRG proteins and the SRP GTPases have a common phylogenetic origin. It therefore seems probable, if surprising, that the substrate-assisted catalytic mechanism has been independently evolved in the two protein families.
- Reliability exercise for the polymyalgia rheumatica classification criteria study : the Oranjewoud ultrasound substudy (2009)
- Objective. A study supported by the EULAR and the ACR being conducted to establish classification criteria for polymyalgia rheumatica (PMR) will include ultrasound examination of the shoulders and hips. Ultrasound (US) depicts glenohumeral joint effusion, biceps tenosynovitis, subdeltoid bursitis, hip joint synovitis, and trochanteric bursitis in PMR. These findings may aid in distinguishing PMR from other diseases. The purpose of this study was to assess standards and US interreader agreement of participants in the PMR classification criteria study. Methods. Sixteen physicians in four groups examined shoulders and hips of 4 patients and 4 healthy adults with ultrasound. Overall agreement and interobserver agreement were calculated. Results. The overall agreement (OA) between groups was 87%. The OA for healthy shoulders was 88.8%, for healthy hips 100%, for shoulders with pathology 85.2%, and 74.3% for hips with pathology, respectively. Conclusion. There was a high degree of agreement found for the examination of healthy shoulders and pathologic hips. Agreement was moderate for pathologic shoulders and perfect for healthy hips. US of shoulder and hips performed by different examiners is a reliable and feasible tool for assessment of PMR related disease pathology and can be incorporated into a classification criteria study.
- Design and applications of versatile small mole-cule dependent RNA of interest release platform (2019)
- This dissertation contains two chapters. Each chapter covers a unique topic within RNA science and is divided in two sub sections, part A and B. Each chapter contains an introduction. Chapter 1 gives an insight into challenges encountered during sample design and preparation for single molecule Förster energy transfer (smFRET) spectroscopy and offers a solution via a newly establishedestablished workflow to obtain accurate smFRET constructs. Following this workflow, a FRET network could be generated, which allowed a detailed structural dynamics study on H/ACA RNP during catalysis with smFRET spectroscopy. This led to detailed mechanistic insights into H/ACA RNPs dynamics during catalysis. Chapter 2 deals with RNA synthetic biology whereby a novel eclectic design strategy for RNA of interest (ROI) release platform is presented, which allows to release a diverse ROI sequences with single nucleotide precision triggered by an external stimulus. This design strategy was used to establish a ROI release system and its powerful performance in in vitro and in vivo applications was shown.
- Investigation of structural dynamics of H/ACA RNPs by smFRET spectroscopy & design and applications of versatile small molecule dependent RNA of interest release platform (2019)
- This dissertation contains two chapters. Each chapter covers a unique topic within RNA sci-ence and is divided in two sub sections, part A and B. Each chapter contains an introduction. Chapter 1 gives an insight into challenges encountered during sample design and preparation for single molecule Förster energy transfer (smFRET) spectroscopy and offers a solution via a newly establishedestablished workflow to obtain accurate smFRET constructs. Following this workflow, a FRET network could be generated, which allowed a detailed structural dynamics study on H/ACA RNP during catalysis with smFRET spectroscopy. This led to detailed mech-anistic insights into H/ACA RNPs dynamics during catalysis. Chapter 2 deals with RNA synthetic biology whereby a novel eclectic design strategy for RNA of interest (ROI) release platform is presented, which allows to release a diverse ROI se-quences with single nucleotide precision triggered by an external stimulus. This design strat-egy was used to establish a ROI release system and its powerful performance in in vitro and in vivo applications was shown.
