Universitätspublikationen
Refine
Year of publication
Document Type
- Article (10303)
- Doctoral Thesis (1512)
- Working Paper (1424)
- Preprint (1280)
- Part of Periodical (557)
- Conference Proceeding (493)
- Report (299)
- Part of a Book (105)
- Review (92)
- Book (61)
Language
- English (16224) (remove)
Keywords
- inflammation (89)
- COVID-19 (87)
- SARS-CoV-2 (62)
- Financial Institutions (47)
- Germany (45)
- climate change (44)
- ECB (42)
- cancer (41)
- crystal structure (41)
- aging (40)
Institute
- Medizin (4895)
- Physik (2632)
- Wirtschaftswissenschaften (1613)
- Frankfurt Institute for Advanced Studies (FIAS) (1450)
- Biowissenschaften (1327)
- Informatik (1220)
- Center for Financial Studies (CFS) (1117)
- Sustainable Architecture for Finance in Europe (SAFE) (1041)
- Biochemie und Chemie (828)
- House of Finance (HoF) (693)
This article examines Jamal Mahjoub's 2003 novel Travelling with Djinns from a transcultural perspective. Drawing on Wolfgang Welsch's definition of transculturality, I argue that the road trip plays an integral role in how the novel maps 21st century Europe as a heterogeneous construct. While driving from Germany through France to Spain, the main character Yasin adopts a fluid understanding of identity, informed by his experience of being on the move. Simultaneously, the novel conceptualises the European continent as irrevocably shaped by its history of migration, relating the road trip to other historic experiences of travel, migration and exile, some – but not all – of which linked to Europe's colonial past. Extensive intertextual references also support the novel's central idea that cultural encounters have shaped Europe for centuries. Since transcultural exchanges tend to be an ever-growing phenomenon in the face of mass migration, globalisation and communication technology, Travelling with Djinns sets out to underscore the continent's transcultural condition as both historic and ongoing.
In this thesis, we characterized megasynthases such as fatty acid synthases (FASs) and polyketide synthases. The obtained insights into structure and function were used to engineer such systems to produce new-to-nature compounds.
The in vitro characterization of megasynthases requires reproducible access to these enzymes in high quality. Therefore, we established purification strategies for the yeast FAS and the methylsalicylic acid synthase (MSAS) from Saccharopolyspora erythraea (SerMSAS) and applied the latter one on MSAS from Penicillium patulum (PenPaMSAS) and on 6-deoxyerythronolide B synthase (DEBS) module 6. With the purified samples, we were able to obtain initial structural data for SerMSAS and solve the complete structure of the yeast FAS (PDB: 6TA1). On the example of the yeast FAS, we could show that the sample can suffer from adsorption to the water-air interface during the grid preparation for electron microscopy and presented how the use of graphene-based grids can overcome this problem. The combined structural and functional analysis of the yeast FAS showed that the structural domains trimerization module and dimerization module 2 are not essential for the assembly of the whole system. Therefore, they can potentially be used for domain exchange approaches. The in-depth functional analysis of SerMSAS revealed that not SerMSAS itself releases the product, but a 3-oxoacyl-(acyl-carrier protein) synthase like enzyme within the gene cluster transfers 6-methyl salicylic acid from SerMSAS to another carrier protein for subsequent modifications. In contrast, we showed that PenPaMSAS can release its product by hydrolysis and that non-native substrates can be incorporated although at significantly slower turnover rates compared to the native starter substrate. Our further investigation demonstrated that the substrate specificity of the acyltransferase (AT) is a critical factor for the incorporation of non-native substrates.
With the insight from the functional and structural characterization, we engineered megasynthases for the biosynthesis of natural product derivatives. We targeted the AT of PenPaMSAS for active site mutagenesis and discovered a mutant which can transfer non-native substrates significantly faster (~200-300%). Additionally, the malonyl/acetyl transferase (MAT) of the mammalian FAS was used as a promising target for protein engineering because of its previously reported properties including polyspecificity, fast transfer kinetics, robustness, and plasticity. We showed that the MAT can transfer fluorinated substrates and accept the acyl carrier protein of DEBS module 6. By exchanging the substrate specific AT of DEBS with the polyspecific MAT of the mammalian FAS, we demonstrated an efficient DEBS/FAS hybrid and an optimal truncation site for the applied ATs. In contrast to the wild type system, the DEBS/FAS enzyme was able to synthesize demethylated and fluorinated derivatives. The production and purification of a fluoro-methyl-disubstituted polyketide was of particular interest, as it has a high potential for the generation of new drugs and shows the potential of protein engineering. Furthermore, the incorporation of the disubstituted substrate had important implication in the mechanistic details of the ketosynthase-mediated C-C bond formation.
Acetogenic bacteria are a polyphyletic group of organisms that fix carbon dioxide under anaerobic, non-phototrophic conditions by reduction of two mol of CO2 to acetyl-CoA via the Wood–Ljungdahl pathway. This pathway also allows for lithotrophic growth with H2 as electron donor and this pathway is considered to be one of the oldest, if not the oldest metabolic pathway on Earth for CO2 reduction, since it is coupled to the synthesis of ATP. How ATP is synthesized has been an enigma for decades, but in the last decade two ferredoxin-dependent respiratory chains were discovered. Those respiratory chains comprise of a cytochrome-free, ferredoxin-dependent respiratory enzyme complex, which is either the Rnf or Ech complex. However, it was discovered already 50 years ago that some acetogens contain cytochromes and quinones, but their role had only a shadowy existence. Here, we review the literature on the characterization of cytochromes and quinones in acetogens and present a hypothesis that they may function in electron transport chains in addition to Rnf and Ech.
Mongolia covers a huge area in Asia and provides excellent Palaeozoic successions although large regions still lack detailed information on fauna and flora in Palaeozoic rocks. Of special interest is the Central Asian Orogenic Belt (CAOB), one of the largest collisional complexes on Earth. The CAOB is composed of a large number of terranes, continental margins, island arcs, backarc/forearc basins and accretionary wedges (Badarch et al. 2002; Safonova et al. 2017). Many terranes and regions underwent strong metamorphism, such as areas north of the Main Mongolian Lineament. To the south, Palaeozoic rocks exhibit low-grade metamorphism, thrusting and folding. Two promising long successions of Palaeozoic rocks were studied, namely the Hushoot Shiveetiin gol section and the Bayankhoshuu Ruins section. The intention of the PhD was to study marine facies settings in Palaeozoic rocks of southern and southwestern Mongolia, in an area little is known in terms of biostratigraphy and events. In order to get a better understanding on events and what might have been the driving forces I studied sections in Mongolia which have not been in the focus of research in the last decades. In order to complement studies on Late Devonian events elsewhere, I decided to study sections in open ocean environments (CAOB), far away from mainly studied epicontinental areas.As stated in many publications, events are the driving force for evolution. They exhibit dramatical changes in the palaeontological record of organisms and they are often associated with dramatic extinctions (Walliser 1996) and anoxic sediments (but not always). Mass extinctions are episodes in which a large number of plant and animal species became extinct within a few thousand to a hundred thousand years. Most events (first and second order events) are traceable worldwide. For instance, in the Late Devonian, mass extinction events recognized at the Frasnian–Famennian (F/F) stage boundary and at the Devonian–Carboniferous (D/C) boundary (McLaren and Goodfellow 1990; Sepkoski 1996; Walliser 1996). Overall, 19% of all families, 50% of all genera and at least 70% of all species became extinct (Raup and Sepkoski 1982; Sepkoski 1996; McGhee et al. 2013), but extinctions also concerned palaeoecosystems and due to Late Devonian events whole coral/stromatoporoid reef ecosystems became extinct. What might be the reason(s) for these dramatical changes? Why did the carbonate factory brake down? There are several reasons which have been discussed. For instance, extraterrestrial bolide impacts (McLaren 1970), anoxia within the water column due to climate changes (House 1985; Becker and House 1994; Caplan and Bustin 1999; Bond and Wignall 2005), transgressions and regressions (Newell 1967; Hallam and Wignall 1999; Purdy 2008; Ruban 2010, 2013; Smith and Benson 2013), eutrophication and increased sediment transport (Joachimski et al. 1993; Schobben et al. 2016), explosive volcanism (Paschall et al. 2019) and/ or large igneous provinces (LIP’s, Ernst et al. 2019; Racki et al. 2020, among others) and much more has been considered. The main problem is that previous studies preferably have been done along former epicontinental margins between Laurassia and Gondwana. Less information is available in deep open oceanic successions and shallow-water areas around island arcs. Generally, events are characterized by bituminous rocks, such as black limestones and shales within marine realms, but they do not necessarily occur everywhere (see Carmichael et al. 2016). So, the question was: “Can we recognize Palaeozoic event layers or equivalents in the CAOB?” If so, is this comparable to already published data? What might be the main trigger, as there are many reasons still in discussion? And finally, what has happened in the aftermath of those events as it seems that the CAOB may have acted as a refugium for at least some groups, such as for crinoids (Waters and Webster 2009; Tolokonnikova and Ernst 2010). In this thesis, I will provide data from isolated ecosystems from a rather unstudied region, which will complement studies from other parts of the World.
This thesis examines the referential properties of prenominal possessive modifiers in Serbian. The focus of the investigation is on the configurations that have been claimed to violate Binding Principles B and C: lexical or pronominal possessives modifying a noun in subject position binding a pronoun or an R-expression in object position. Such constructions have been claimed to be ungrammatical in Serbian due to the alleged adjectival status of the possessive and its respective syntactic position as NP-adjoined (Despić 2013).
The present thesis takes up the ongoing debate about the categorial status of Serbian possessives as adjectives or determiners. Based on several arguments, such as word order, binding of anaphora, coordination, and the fact that they are typically represented by either nouns or pronouns, it is concluded that possessives rather behave like full noun phrases than adjectives. Therefore, I analyse possessives as DPs from a categorial point of view.
In a second step, the syntactic position of the possessives within the Serbian noun phrase has been investigated. Based on theoretical arguments (cf. Bašić 2004) and empirical evidence, I propose a structural position that would accommodate the binding facts and the referential possibilities in these configurations. In line with Kayne (1994), Bernstein and Tortora (2005) and Alexiadou et al. (2007), I assume that possessives occupy SpecAgrP in Serbian, where they move from their base position (SpecPossP). Thirdly, I question the (im)possibility of coreference with possessives in comparison to ‘typical’ binding constructions without possessives by providing empirical evidence from three experimental studies, showing that coreference between possessive modifiers and objects is indeed available in Serbian.
The results from Experiment 1 (a picture selection task) have shown that coreference between a lexical possessive and a (clitic or strong) pronoun is allowed in Serbian. Further, there is a tendency that the coreferential reading is preferred with clitics, while the disjoint reference is preferred with strong pronouns. The fact that coreference is possible, does not necessarily mean that it is always available as the only interpretation, but can be influenced by other (pragmatic) factors. The same is observed in Experiments 2 and 3 as coreference was chosen between pronominal possessives modifying a noun in subject position and R-expressions but rejected between pronouns and R-expressions in a forced-choice task, suggesting a structural difference – no c-command – in the former case. The results from the self-paced reading task corroborate this finding.
Importantly, the experimental results provide evidence that possessive configurations are not violating Binding Principles B and C. This implies that Serbian possessive constructions do not c-command out of the noun phrase, as predicted by the proposed syntactic analysis.
The findings from all experiments contribute to the bigger picture concerning the nature and behaviour of Serbian possessives and cast doubt on the cross-linguistic DG/AG parameter. Instead, the theoretical arguments and the empirical results from the experiments rather speak for a parallel structure of possessive noun phrases in Serbian and English and ultimately in favour of the Universal DP Hypothesis.
The main topic of the present thesis is scene flow estimation in a monocular camera system. Scene flow describes the joint representation of 3D positions and motions of the scene. A special focus is placed on approaches that combine two kinds of information, deep-learning-based single-view depth estimation and model-based multi-view geometry.
The first part addresses single-view depth estimation focussing on a method that provides single-view depth information in an advantageous form for monocular scene flow estimation methods. A convolutional neural network, called ProbDepthNet, is proposed, which provides pixel-wise well-calibrated depth distributions. The experiments show that different strategies for quantifying the measurement uncertainty provide overconfident estimates due to overfitting effects. Therefore, a novel recalibration technique is integrated as part of the ProbDepthNet, which is validated to improve the calibration of the uncertainty measures. The monocular scene flow methods presented in the subsequent parts confirm that the integration of single-view depth information results in the best performance if the neural network provides depth distributions instead of single depth values and contains a recalibration.
Three methods for monocular scene flow estimation are presented, each one designed to combine multi-view geometry-based optimization with deep learning-based single-view depth estimation such as ProbDepthNet. While the first method, SVD-MSfM, performs the motion and depth estimation as two subsequent steps, the second method, Mono-SF, jointly optimizes the motion estimates and the depth structure. Both methods are tailored to address scenes, where the objects and motions can be represented by a set of rigid bodies. Dynamic traffic scenes are one kind of scenes that essentially fulfill this characteristic. The method, Mono-Stixel, uses an even more specialized scene model for traffic scenes, called stixel world, as underlying scene representation.
The proposed methods provide new state of the art for monocular scene flow estimation with Mono-SF being the first and leading monocular method on the KITTI scene flow benchmark at the time of submission of the present thesis. The experiments validate that both kind of information, the multi-view geometric optimization and the single-view depth estimates, contribute to the monocular scene flow estimates and are necessary to achieve the new state of the art accuracy.