OPUS 4 | Institut für Ökologie, Evolution und Diversität

Which Morphological Characteristics Are Most Influenced by the Host Matrix in Downy Mildews? A Case Study in Pseudoperonospora cubensis (2012)

Marco Fabian Runge Beninweck Ndambi Marco Thines

Before the advent of molecular phylogenetics, species concepts in the downy mildews, an economically important group of obligate biotrophic oomycete pathogens, have mostly been based upon host range and morphology. While molecular phylogenetic studies have confirmed a narrow host range for many downy mildew species, others, like Pseudoperonospora cubensis affect even different genera. Although often morphological differences were found for new, phylogenetically distinct species, uncertainty prevails regarding their host ranges, especially regarding related plants that have been reported as downy mildew hosts, but were not included in the phylogenetic studies. In these cases, the basis for deciding if the divergence in some morphological characters can be deemed sufficient for designation as separate species is uncertain, as observed morphological divergence could be due to different host matrices colonised. The broad host range of P. cubensis (ca. 60 host species) renders this pathogen an ideal model organism for the investigation of morphological variations in relation to the host matrix and to evaluate which characteristics are best indicators for conspecificity or distinctiveness. On the basis of twelve morphological characterisitcs and a set of twelve cucurbits from five different Cucurbitaceae tribes, including the two species, Cyclanthera pedata and Thladiantha dubia, hitherto not reported as hosts of P. cubensis, a significant influence of the host matrix on pathogen morphology was found. Given the high intraspecific variation of some characteristics, also their plasticity has to be taken into account. The implications for morphological species determination and the confidence limits of morphological characteristics are discussed. For species delimitations in Pseudoperonospora it is shown that the ratio of the height of the first ramification to the sporangiophore length, ratio of the longer to the shorter ultimate branchlet, and especially the length and width of sporangia, as well as, with some reservations, their ratio, are the most suitable characteristics for species delimitation.

Species distribution modelling of stream macroinvertebrates under climate change scenarios (2012)

Sami Domisch

There is increasing evidence that climate change will have a severe impact on species’ distributions by altering the climatic conditions within their present ranges. Especially species inhabiting stream ecosystems are expected to be strongly affected due to warming temperatures and changes in precipitation patterns. The aim of this thesis was to investigate how distributions of aquatic insects, i.e., benthic stream macroinvertebrates would be impacted by warming climates. The methods comprised of an ensemble forecasting technique based on species distribution models (SDMs) and climate change scenarios of the Intergovernmental Panel on Climate Change of the year 2080. Future model projections were generated for a wide variety of species from a number of taxonomic orders for two spatial scales: a stream network within the lower mountain ranges of Germany, and the entire territory across Europe. In addition, the effect of the modelling technique on habitat suitability projections was investigated by modifying the choice of study area (continuous area vs. stream network) and the choice of predictors (standard vs. corrected set). Projections of future habitat suitability showed that potential climate-change impacts would be dependent on species’ thermal preferences, and with a similar pattern for both spatial scales. Future habitat suitability was projected to remain for most or all of the modelled species, and species were projected to track their climatically suitable conditions by shifting uphill along the river continuum within the lower mountain ranges, and into a north-easterly direction across Europe. Cold-adapted headwater and high-latitude species were projected to lose suitable habitats, whereas gains would be expected for warm-adapted river and low-latitude species along the river continuum and across Europe, respectively. Additionally, habitat specialist species in terms of endemics of the Iberian Peninsula were identified as potential climate-change losers, highlighting their restricted habitat availability and therefore vulnerability to warming climates. The main findings of this thesis underline the high susceptibility of stream macroinvertebrates to ongoing climate change, and give insights into patterns of possible consequences due to changes in species’ habitat suitability. Concerning the methodology, a clear recommendation can be given for future modelling approaches of stream macroinvertebrates by building models within a stream network and with a careful choice of environmental predictors, to reduce uncertainties and thus to improve model projections.

Evolution of microgastropods (Ellobioidea, Carychiidae): integrating taxonomic, phylogenetic and evolutionary hypotheses (2013)

Alexander M. Weigand Adrienne Jochum Rajko Slapnik Jan Schnitzler Eugenia Zarza Annette Klussmann-Kolb

BACKGROUND: Current biodiversity patterns are considered largely the result of past climatic and tectonic changes. In an integrative approach, we combine taxonomic and phylogenetic hypotheses to analyze temporal and geographic diversification of epigean (Carychium) and subterranean (Zospeum) evolutionary lineages in Carychiidae (Eupulmonata, Ellobioidea). We explicitly test three hypotheses: 1) morphospecies encompass unrecognized evolutionary lineages, 2) limited dispersal results in a close genetic relationship of geographical proximally distributed taxa and 3) major climatic and tectonic events had an impact on lineage diversification within Carychiidae. RESULTS: Initial morphospecies assignments were investigated by different molecular delimitation approaches (threshold, ABGD, GMYC and SP). Despite a conservative delimitation strategy, carychiid morphospecies comprise a great number of unrecognized evolutionary lineages. We attribute this phenomenon to historic underestimation of morphological stasis and phenotypic variability amongst lineages. The first molecular phylogenetic hypothesis for the Carychiidae (based on COI, 16S and H3) reveals Carychium and Zospeum to be reciprocally monophyletic. Geographical proximally distributed lineages are often closely related. The temporal diversification of Carychiidae is best described by a constant rate model of diversification. The evolution of Carychiidae is characterized by relatively few (long distance) colonization events. We find support for an Asian origin of Carychium. Zospeum may have arrived in Europe before extant members of Carychium. Distantly related Carychium clades inhabit a wide spectrum of the available bioclimatic niche and demonstrate considerable niche overlap. CONCLUSIONS: Carychiid taxonomy is in dire need of revision. An inferred wide distribution and variable phenotype suggest underestimated diversity in Zospeum. Several Carychium morphospecies are results of past taxonomic lumping. By collecting populations at their type locality, molecular investigations are able to link historic morphospecies assignments to their respective evolutionary lineage. We propose that rare founder populations initially colonized a continent or cave system. Subsequent passive dispersal into adjacent areas led to in situ pan-continental or mountain range diversifications. Major environmental changes did not influence carychiid diversification. However, certain molecular delimitation methods indicated a recent decrease in diversification rate. We attribute this decrease to protracted speciation.

Ordnung des Fachbereichs Biowissenschaften der Johann Wolfgang Goethe-Universität für den Masterstudiengang Ökologie und Evolution mit dem Abschluss "Master of Science" (M.Sc.) vom 16. Juni 2009 : genehmigt vom Präsidium der Johann Wolfgang Goethe-Universität Frankfurt a. M. am 27.04.2010 (2010)

Genomic resources for a model in adaptation and speciation research: characterization of the Poecilia mexicana transcriptome (2012)

Joanna L. Kelley Courtney N. Passow Martin Plath Lenin Arias Rodriguez Muh-Ching Yee Michael Tobler

Background: Elucidating the genomic basis of adaptation and speciation is a major challenge in natural systems with large quantities of environmental and phenotypic data, mostly because of the scarcity of genomic resources for non-model organisms. The Atlantic molly (Poecilia mexicana, Poeciliidae) is a small livebearing fish that has been extensively studied for evolutionary ecology research, particularly because this species has repeatedly colonized extreme environments in the form of caves and toxic hydrogen sulfide containing springs. In such extreme environments, populations show strong patterns of adaptive trait divergence and the emergence of reproductive isolation. Here, we used RNA-sequencing to assemble and annotate the first transcriptome of P. mexicana to facilitate ecological genomics studies in the future and aid the identification of genes underlying adaptation and speciation in the system. Description: We provide the first annotated reference transcriptome of P. mexicana. Our transcriptome shows high congruence with other published fish transcriptomes, including that of the guppy, medaka, zebrafish, and stickleback. Transcriptome annotation uncovered the presence of candidate genes relevant in the study of adaptation to extreme environments. We describe general and oxidative stress response genes as well as genes involved in pathways induced by hypoxia or involved in sulfide metabolism. To facilitate future comparative analyses, we also conducted quantitative comparisons between P. mexicana from different river drainages. 106,524 single nucleotide polymorphisms were detected in our dataset, including potential markers that are putatively fixed across drainages. Furthermore, specimens from different drainages exhibited some consistent differences in gene regulation. Conclusions: Our study provides a valuable genomic resource to study the molecular underpinnings of adaptation to extreme environments in replicated sulfide spring and cave environments. In addition, this study adds to the increasing number of genomic resources in the family Poeciliidae, which are widely used in comparative analyses of behavior, ecology, evolution, and medical genetics.

Flora et Vegetatio Sudano-Sambesica : Volume 11 - 2008 (2008)

Flora et Vegetatio Sudano-Sambesica (2008)

Diversité et structure des groupements ligneux du parc national d’Arly (Est du Burkina Faso) (2008)

Oumarou Ouedraogo Adjima Thiombiano Karen Hahn-Hadjali Sita Guinko

La présente étude menée sur la végétation ligneuse du parc national d’Arly a pour objectif de caractériser la diversité et la structure des différents groupements végétaux en relation avec les conditions écologiques. 243 relevés phytosociologiques ont été réalisés. Ces relevés font ressortir 109 espèces ligneuses et 10 groupements par la méthode d’analyse DCA. La diversité des groupements végétaux a été caractérisée par le calcul des indices de diversité. Pour chaque groupement ligneux, 10 relevés ont été choisis de manière aléatoire pour des mesures dendrométriques. Les individus dont le diamètre à 1,3 m du sol est supérieur à 5 cm ont été mesurés. La structure des groupements a été décrite à travers la répartition des individus en classe de diamètre, le calcul de la densité et de la surface terrière. La relation entre la diversité et la structure des groupements a été établie sur la base d’analyse de corrélation. Les groupements ligneux distingués sont répartis suivant le gradient topographique. L’analyse de la structure démographique en classe de diamètre montre que les peuplements des différents groupements végétaux sont stables, ce qui traduit leur adaptation aux facteurs écologiques stationnelles telles que le feu et les conditions de sol. Les forêts claires à Tamarindus indica et Combretum paniculatum et les forêts galeries à Vitex chrysocarpa et Garcinia livingstonei sont les formations les plus denses et les groupements ligneux les plus diversifiés. A l’opposé, les savanes arbustives clairsemées à Euphorbia sudanica et Combretum niorense et celles à Acacia sieberiana sont moins denses et constituent les groupements les plus pauvres en espèces. Ainsi, il existe une relation entre la diversité et la structure des groupements des formations ligneuses. Les conditions édaphiques et topographiques occupées par ces groupements expliquent à la fois leur diversité et leur structure. Mots clés: groupements ligneux, relevés, stabilité, sol

Impact of protected areas and land use on regeneration of Acacia woodland’s in Eastern Burkina Faso (2008)

Salifou Traoré Oumar Kaboré Jeanne Millogo Rasolodimbi Lamourdia Thiombiano Sita Guinko

Regeneration success, persistence strategies (seedlings vs. coppicing), and population trend of Acacia spp. were tested under two land-use regimes in eastern Burkina Faso: (i) protected areas shielded to livestock grazing pressure, to logging, and using early annual fire as a management system; (ii) areas with high human impact (heavily and extensive livestock grazing, harvesting for wood and for medicinal plants). Generally, a good regeneration rate of Acacia species was observed in protected areas and a poor regeneration rate in areas with high human impact. Nevertheless, some species affiliated to the subgenus Aculeiferum as A. dudgeoni and A. polyacantha showed a good regeneration under both land use regimes. Juvenile plants less than 25 cm height of A. dudgeoni and A. gourmaensis increased by 116 to 50 % in areas with human impact as compared to their populations in protected areas. With SCD slopes varying from –0.40 to -0.70, the protected Acacia woodland displayed a stable population structure due to abundance of recruitment, and coppicing persistence (more common in the subgenus Aculeiferum) favoured by early annual fire. Consequently, the protected areas are favourable for Acacia woodland regeneration. Conversely, SCD slopes are positive or close to zero in areas of anthropogenic regime and showed a declining population, especially more marked with the subgenus Acacia due to permanent seed and seedling removal by livestock grazing. Nevertheless, the number of seedlings of some species was higher in areas under human pressure than in protected areas, especially for the subgenus Aculeiferum, improving the genetic variability and thus the long-term maintenance of the population. Key words: Acacia, early fire, land use, sudano-sahelien zone

Structure des ligneux des formations végétales de la Réserve de Pama (Sud-Est du Burkina Faso, Afrique de l’Ouest) (2008)

Elisée Mbayngone Adjima Thiombiano Karen Hahn-Hadjali Sita Guinko

L´analyse de dix groupements ligneux et dix espèces dominantes a été faite du nombre de tiges à l’hectare et des classes de diamètre des populations correspondantes. Il ressort que les groupements les plus denses sont ceux à Combretum nigricans Lepr. ex Guill. & Perr., Anogeissus leiocarpus (DC.) Guill. & Perr., Acacia hockii De Wild. et A. dudgeoni Craib. ex Holland, tandis que les moins denses sont ceux à Gardenia ternifolia Schumach. & Thonn., Vitellaria paradoxa C. F. Gaertn. et Piliostigma thonningii (Schumach.) Milne-Redh. La répartition des individus en classes de diamètre a révélé que tous les groupements sont stables, c’est-à-dire capables de se renouveler par la régénération naturelle. Mais la structure des espèces dominantes présente beaucoup d’irrégularités liées à leurs exigences écologiques, aux feux de brousse et aux attaques d’éléphants. Toutefois, la plasticité écologique et la biologie de certaines espèces leur confèrent assez de structures de populations stables. Mots clés: Aires protégées, Burkina Faso, Groupements ligneux, Structure de population

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