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An annotated draft genome for Radix auricularia (Gastropoda, Mollusca)

  • Molluscs are the second most species-rich phylum in the animal kingdom, yet only eleven genomes of this group have been published so far. Here, we present the draft genome sequence of the pulmonate freshwater snail Radix auricularia. Six whole genome shotgun libraries with different layouts were sequenced. The resulting assembly comprises 4,823 scaffolds with a cumulative length of 910 Mb and an overall read coverage of 72x. The assembly contains 94.6 % of a metazoan core gene collection, indicating an almost complete coverage of the coding fraction. The discrepancy of ~690 Mb compared to the estimated genome size of R. auricularia (1.6 Gb) results from a high repeat content of 70 % mainly comprising DNA transposons. The annotation of 17,338 protein coding genes was supported by the use of publicly-available transcriptome data. This draft will serve as starting point for further genomic and population genetic research in this scientifically important phylum.

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Metadaten
Author:Tilman SchellORCiDGND, Barbara FeldmeyerORCiDGND, Hanno SchmidtORCiDGND, Bastian Greshake TzovarasORCiDGND, Oliver TillsORCiD, Manuela TruebanoORCiD, Simon D. Rundle, Juraj PauleORCiDGND, Ingo EbersbergerORCiDGND, Markus PfenningerORCiDGND
URN:urn:nbn:de:hebis:30:3-724279
DOI:https://doi.org/10.1101/087254
Parent Title (English):bioRxiv
Document Type:Preprint
Language:English
Date of Publication (online):2017/02/01
Date of first Publication:2017/02/01
Publishing Institution:Universitätsbibliothek Johann Christian Senckenberg
Release Date:2023/06/07
Issue:087254
Page Number:20
HeBIS-PPN:509388930
Institutes:Angeschlossene und kooperierende Institutionen / Senckenbergische Naturforschende Gesellschaft
Biowissenschaften / Institut für Ökologie, Evolution und Diversität
Dewey Decimal Classification:5 Naturwissenschaften und Mathematik / 59 Tiere (Zoologie) / 590 Tiere (Zoologie)
Sammlungen:Universitätspublikationen
Licence (German):License LogoCreative Commons - CC BY-NC-ND - Namensnennung - Nicht kommerziell - Keine Bearbeitungen 4.0 International