TY - INPR A1 - Turoňová, Beata A1 - Sikora, Mateusz A1 - Schürmann, Christoph A1 - Hagen, Wim A1 - Welsch, Sonja A1 - Blanc, Florian E. C. A1 - Bülow, Sören von A1 - Gecht, Michael A1 - Bagola, Katrin A1 - Hörner, Cindy A1 - Zandbergen, Ger van A1 - Mosalaganti, Shyamal Narayan A1 - Schwarz, Andre A1 - Covino, Roberto A1 - Mühlebach, Michael D. A1 - Hummer, Gerhard A1 - Krijnse-Locker, Jacomine A1 - Beck, Martin T1 - In situ structural analysis of SARS-CoV-2 spike reveals flexibility mediated by three hinges T2 - bioRxiv N2 - The spike (S) protein of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is required for cell entry and is the major focus for vaccine development. We combine cryo electron tomography, subtomogram averaging and molecular dynamics simulations to structurally analyze S in situ. Compared to recombinant S, the viral S is more heavily glycosylated and occurs predominantly in a closed pre-fusion conformation. We show that the stalk domain of S contains three hinges that give the globular domain unexpected orientational freedom. We propose that the hinges allow S to scan the host cell surface, shielded from antibodies by an extensive glycan coat. The structure of native S contributes to our understanding of SARS-CoV-2 infection and the development of safe vaccines. The large scale tomography data set of SARS-CoV-2 used for this study is therefore sufficient to resolve structural features to below 5 Ångstrom, and is publicly available at EMPIAR-10453. Y1 - 2020 UR - http://publikationen.ub.uni-frankfurt.de/frontdoor/index/index/docId/72774 UR - https://nbn-resolving.org/urn:nbn:de:hebis:30:3-727745 IS - 2020.06.26.173476 ER -