Identification of primary and secondary metabolites and transcriptome profile of soybean tissues during different stages of hypoxia

  • NMR and chromatography methods combined with mass spectrometry are the most important analytical techniques employed for plant metabolomics screening. Metabolomic analysis integrated to transcriptome screening add an important extra dimension to the information flow from DNA to RNA to protein. The most useful NMR experiment in metabolomics analysis is the proton spectra due the high receptivity of 1H and important structural information, through proton–proton scalar coupling. Routinely, databases have been used in identification of primary metabolites, however, there is currently no comparable data for identification of secondary metabolites, mainly, due to signal overlap in normal 1H NMR spectra and natural variation of plant. Related to spectra overlap, alternatively, better resolution can be find using 1H pure shift and 2D NMR pulse sequence in complex samples due to spreading the resonances in a second dimension. Thus, in data brief we provide a catalogue of metabolites and expression levels of genes identified in soy leaves and roots under flooding stress.
Author:Isabel Coutinho Duarte, Liliane Marcia Mert Henning, Silas Aurelian Döpp, Alexandre Nepomuceno, Larissa Alexandra Cardoso Moraes, Juliana Marcolino-Gomes, Christian RichterORCiD, Harald SchwalbeORCiDGND, Luiz Alberto Colnago
Pubmed Id:
Parent Title (English):Data in Brief
Place of publication:Amsterdam [u. a.]
Document Type:Article
Year of Completion:2018
Date of first Publication:2018/10/15
Publishing Institution:Universitätsbibliothek Johann Christian Senckenberg
Release Date:2018/12/04
Tag:Nuclear magnetic resonance; Primary metabolites; Secondary metabolites; Soybean
Page Number:12
First Page:1089
Last Page:1100
© 2018 The Authors. Published by Elsevier Inc. This is an open access article under the CC BY license (
Institutes:Biochemie, Chemie und Pharmazie / Biochemie und Chemie
Exzellenzcluster / Exzellenzcluster Makromolekulare Komplexe
Wissenschaftliche Zentren und koordinierte Programme / Sonderforschungsbereiche / Forschungskollegs
Wissenschaftliche Zentren und koordinierte Programme / Zentrum für Biomolekulare Magnetische Resonanz (BMRZ)
Dewey Decimal Classification:5 Naturwissenschaften und Mathematik / 54 Chemie / 540 Chemie und zugeordnete Wissenschaften
Licence (German):License LogoCreative Commons - Namensnennung 4.0