• Deutsch
Login

Open Access

  • Home
  • Search
  • Browse
  • Publish
  • FAQ

Refine

Author

  • Zizka, Georg (25)
  • Schmidt, Marco (7)
  • Paule, Juraj (6)
  • Dressler, Stefan (5)
  • Hahn-Hadjali, Karen (5)
  • Wittig, Rüdiger (4)
  • Gregor, Thomas (3)
  • Heller, Sascha (3)
  • Koch, Marcus A. (3)
  • Leme, Elton M. C. (3)
+ more

Year of publication

  • 2020 (4)
  • 2009 (2)
  • 2012 (2)
  • 2013 (2)
  • 2015 (2)
  • 2017 (2)
  • 2018 (2)
  • 2021 (2)
  • 2002 (1)
  • 2008 (1)
+ more

Document Type

  • Article (25)

Language

  • English (19)
  • German (6)

Has Fulltext

  • yes (25)

Is part of the Bibliography

  • no (25)

Keywords

  • Biodiversität (2)
  • West Africa (2)
  • species richness (2)
  • Artificial Intelligence (1)
  • Biodiversity Data (1)
  • Biomonitoring (1)
  • Bodenkrusten (1)
  • Botanical Collections (1)
  • Botaniker (1)
  • Bromeliads (1)
+ more

Institute

  • Institut für Ökologie, Evolution und Diversität (10)
  • Senckenbergische Naturforschende Gesellschaft (10)
  • Biowissenschaften (6)
  • Zentrum für Interdisziplinäre Afrikaforschung (ZIAF) (5)
  • Biodiversität und Klima Forschungszentrum (BiK-F) (4)
  • Präsidium (1)

25 search hits

  • 1 to 10
  • 10
  • 20
  • 50
  • 100

Sort by

  • Year
  • Year
  • Title
  • Title
  • Author
  • Author
Biogeography and conservation status of the pineapple family (Bromeliaceae) (2019)
Zizka, Alexander ; Azevedo, Josue ; Leme, Elton ; Neves, Beatriz ; Ferreira da Costa, Andrea ; Cáceres González, Daniel ; Zizka, Georg
Aim: To provide distribution information and preliminary conservation assessments for all species of the pineapple family (Bromeliaceae), one of the most diverse and ecologically important plant groups of the American tropics—a global biodiversity hotspot. Furthermore, we aim to analyse patterns of diversity, endemism and the conservation status of the Bromeliaceae on the continental level in the light of their evolutionary history. Location: The Americas. Methods: We compiled a dataset of occurrence records for 3,272 bromeliad species (93.4% of the family) and modelled their geographic distribution using either climate‐based species distribution models, convex hulls or geographic buffers dependent on the number of occurrences available. We then combined this data with information on taxonomy and used the ConR software for a preliminary assessment of the conservation status of all species following Criterion B of the International Union for the Conservation of Nature (IUCN). Results: Our results stress the Atlantic Forest in eastern Brazil, the Andean slopes, Central America and the Guiana Highlands as centres of bromeliad diversity and endemism. Phylogenetically ancient subfamilies of bromeliads are centred in the Guiana highlands whereas the large radiations of the group spread across different habitats and large geographic area. A total of 81% of the evaluated bromeliad species are Possibly Threatened with extinction. We provide range polygons for 3,272 species, as well as newly georeferenced point localities for 911 species in the novel “bromeliad” r package, together with functions to generate diversity maps for individual taxonomic or functional groups. Main conclusions: Diversity centres of the Bromeliaceae agreed with macroecological patterns of other plant and animal groups, but show some particular patterns related to the evolutionary origin of the family, especially ancient dispersal corridors. A staggering 2/3rds of Bromeliaceae species might be threatened with extinction, especially so in tropical rain forests, raising concerns about the conservation of the family and bromeliad‐dependent animal species.
Traditional plant use in Burkina Faso (West Africa) : a national-scale analysis with focus on traditional medicine (2015)
Zizka, Alexander ; Thiombiano, Adjima ; Dressler, Stefan ; Nacoulma, Blandine Marie Ivette ; Ouédraogo, Amadé ; Ouédraogo, Issaka ; Ouédraogo, Oumarou ; Zizka, Georg ; Hahn-Hadjali, Karen ; Schmidt, Marco
Background: The West African country of Burkina Faso (BFA) is an example for the enduring importance of traditional plant use today. A large proportion of its 17 million inhabitants lives in rural communities and strongly depends on local plant products for their livelihood. However, literature on traditional plant use is still scarce and a comprehensive analysis for the country is still missing. Methods: In this study we combine the information of a recently published plant checklist with information from ethnobotanical literature for a comprehensive, national scale analysis of plant use in Burkina Faso. We quantify the application of plant species in 10 different use categories, evaluate plant use on a plant family level and use the relative importance index to rank all species in the country according to their usefulness. We focus on traditional medicine and quantify the use of plants as remedy against 22 classes of health disorders, evaluate plant use in traditional medicine on the level of plant families and rank all species used in traditional medicine according to their respective usefulness. Results: A total of 1033 species (50%) in Burkina Faso had a documented use. Traditional medicine, human nutrition and animal fodder were the most important use categories. The 12 most common plant families in BFA differed considerably in their usefulness and application. Fabaceae, Poaceae and Malvaceae were the plant families with the most used species. In this study Khaya senegalensis, Adansonia digitata and Diospyros mespiliformis were ranked the top useful plants in BFA. Infections/Infestations, digestive system disorders and genitourinary disorders are the health problems most commonly addressed with medicinal plants. Fabaceae, Poaceae, Asteraceae, Apocynaceae, Malvaceae and Rubiaceae were the most important plant families in traditional medicine. Tamarindus indica, Vitellaria paradoxa and Adansonia digitata were ranked the most important medicinal plants. Conclusions: The national-scale analysis revealed systematic patterns of traditional plant use throughout BFA. These results are of interest for applied research, as a detailed knowledge of traditional plant use can a) help to communicate conservation needs and b) facilitate future research on drug screening.
Wie vertragen sich Artenvielfalt und menschliche Besiedlung? : Städtische Biotope und gefährdete Arten im Rhein-Main-Gebiet (2008)
Wittig, Rüdiger ; Zizka, Georg ; Streit, Bruno
Ohne das Eingreifen des Menschen wäre Mitteleuropa fast ein reines Waldgebiet. Noch heute beheimaten die Wälder eine große Vielfalt an Pflanzen und Tieren, die für diese Region spezifisch sind. Regionale Besonderheiten gehen aber verloren, je mehr Menschen in die Ökosysteme eingreifen: So unterscheiden sich die Pflanzenarten auf der North Charles Street in Baltimore nur wenig von denjenigen der Mainzer Landstraße in Frankfurt. Gleichzeitig verdrängen zugewanderte und eingeschleppte Arten heimische Tiere und Pflanzen. Allerdings gibt es auch im Frankfurter Stadtgebiet echte Horte der Biodiversität.
Klaus Ulrich Leistikow : Nachruf (2002)
Zizka, Georg
A complete digitization of german herbaria is possible, sensible and should be started now (2020)
Borsch, Thomas ; Stevens, Albert-Dieter ; Häffner, Eva ; Güntsch, Anton ; Berendsohn, Walter G. ; Appelhans, Marc Sebastian ; Barilaro, Christina ; Beszteri, Bánk ; Blattner, Frank R. ; Bossdorf, Oliver ; Dalitz, Helmut ; Dressler, Stefan ; Duque-Thüs, Rhinaixa ; Esser, Hans-Joachim ; Franzke, Andreas ; Goetze, Dethardt ; Grein, Michaela ; Grünert, Uta ; Hellwig, Frank ; Hentschel, Jörn ; Hörandl, Elvira ; Janßen, Thomas ; Jürgens, Norbert ; Kadereit, Gudrun ; Karisch, Timm ; Koch, Marcus A. ; Müller, Frank ; Müller, Jochen ; Ober, Dietrich ; Porembski, Stefan ; Poschlod, Peter ; Printzen, Christian ; Röser, Martin ; Sack, Peter ; Schlüter, Philipp ; Schmidt, Marco ; Schnittler, Martin ; Scholler, Markus ; Schultz, Matthias ; Seeber, Elke ; Simmel, Josef ; Stiller, Michael ; Thiv, Mike ; Thüs, Holger ; Tkach, Natalia ; Triebel, Dagmar ; Warnke, Ursula ; Weibulat, Tanja ; Wesche, Karsten ; Yurkov, Andrey ; Zizka, Georg
Plants, fungi and algae are important components of global biodiversity and are fundamental to all ecosystems. They are the basis for human well-being, providing food, materials and medicines. Specimens of all three groups of organisms are accommodated in herbaria, where they are commonly referred to as botanical specimens.The large number of specimens in herbaria provides an ample, permanent and continuously improving knowledge base on these organisms and an indispensable source for the analysis of the distribution of species in space and time critical for current and future research relating to global biodiversity. In order to make full use of this resource, a research infrastructure has to be built that grants comprehensive and free access to the information in herbaria and botanical collections in general. This can be achieved through digitization of the botanical objects and associated data.The botanical research community can count on a long-standing tradition of collaboration among institutions and individuals. It agreed on data standards and standard services even before the advent of computerization and information networking, an example being the Index Herbariorum as a global registry of herbaria helping towards the unique identification of specimens cited in the literature.In the spirit of this collaborative history, 51 representatives from 30 institutions advocate to start the digitization of botanical collections with the overall wall-to-wall digitization of the flat objects stored in German herbaria. Germany has 70 herbaria holding almost 23 million specimens according to a national survey carried out in 2019. 87% of these specimens are not yet digitized. Experiences from other countries like France, the Netherlands, Finland, the US and Australia show that herbaria can be comprehensively and cost-efficiently digitized in a relatively short time due to established workflows and protocols for the high-throughput digitization of flat objects.Most of the herbaria are part of a university (34), fewer belong to municipal museums (10) or state museums (8), six herbaria belong to institutions also supported by federal funds such as Leibniz institutes, and four belong to non-governmental organizations. A common data infrastructure must therefore integrate different kinds of institutions.Making full use of the data gained by digitization requires the set-up of a digital infrastructure for storage, archiving, content indexing and networking as well as standardized access for the scientific use of digital objects. A standards-based portfolio of technical components has already been developed and successfully tested by the Biodiversity Informatics Community over the last two decades, comprising among others access protocols, collection databases, portals, tools for semantic enrichment and annotation, international networking, storage and archiving in accordance with international standards. This was achieved through the funding by national and international programs and initiatives, which also paved the road for the German contribution to the Global Biodiversity Information Facility (GBIF).Herbaria constitute a large part of the German botanical collections that also comprise living collections in botanical gardens and seed banks, DNA- and tissue samples, specimens preserved in fluids or on microscope slides and more. Once the herbaria are digitized, these resources can be integrated, adding to the value of the overall research infrastructure. The community has agreed on tasks that are shared between the herbaria, as the German GBIF model already successfully demonstrates.We have compiled nine scientific use cases of immediate societal relevance for an integrated infrastructure of botanical collections. They address accelerated biodiversity discovery and research, biomonitoring and conservation planning, biodiversity modelling, the generation of trait information, automated image recognition by artificial intelligence, automated pathogen detection, contextualization by interlinking objects, enabling provenance research, as well as education, outreach and citizen science.We propose to start this initiative now in order to valorize German botanical collections as a vital part of a worldwide biodiversity data pool.
Chenopodium album – große morphologische Vielfalt bei Frankfurts Hexaploiden (2018)
Kohn, Lea ; Gregor, Thomas ; Paule, Juraj ; Zizka, Georg
Hexaploides Chenopodium album ist in Frankfurt am Main (Hessen) häufig. Die Pflanzen unterscheiden sich deutlich in Blütezeit, Höhe, Verzweigung, Blattform und Blütenstandsmorphologie, wobei oft morphologisch einheitliche Pflanzen benachbart wachsen. Die Merkmale variieren unabhängig voneinander und es erscheint nicht sinnvoll, morphologische Gruppen taxonomisch zu fassen.
Twenty Years of Cooperation between Botanists of the Goethe-University Frankfurt (Germany) and of West African Universities (2009)
Wittig, Rüdiger ; Guinko, Sita ; Hahn-Hadjali, Karen ; Sinsin, Brice ; Zizka, Georg ; Dressler, Stefan ; Thiombiano, Adjima
The year 1989 represents the starting point of the cooperation between botanists of the Goethe-University in Frankfurt (Germany) and of the University of Ouagadougou (Burkina Faso). Some years later, the University of Abomey-Calavi (Benin) joined the cooperation. This paper gives an overview on joint projects, resulting publications and theses, and on other achievements of this fruitful cooperation, which meanwhile also comprises partners of Ivory Coast, Niger and Senegal.
The low-copy nuclear gene Agt1 as a novel DNA barcoding marker for Bromeliaceae (2020)
Bratzel, Fabian ; Heller, Sascha ; Cyrannek, Nadine ; Paule, Juraj ; Leme, Elton M. C. ; Loreth, Anna ; Nowotny, Annika ; Kiefer, Markus ; Till, Walter ; Barfuss, Michael H. J. ; Lexer, Christian ; Koch, Marcus A. ; Zizka, Georg
Background: The angiosperm family Bromeliaceae comprises over 3.500 species characterized by exceptionally high morphological and ecological diversity, but a very low genetic variation. In many genera, plants are vegetatively very similar which makes determination of non flowering bromeliads difficult. This is particularly problematic with living collections where plants are often cultivated over decades without flowering. DNA barcoding is therefore a very promising approach to provide reliable and convenient assistance in species determination. However, the observed low genetic variation of canonical barcoding markers in bromeliads causes problems. Result. In this study the low-copy nuclear gene Agt1 is identified as a novel DNA barcoding marker suitable for molecular identification of closely related bromeliad species. Combining a comparatively slowly evolving exon sequence with an adjacent, genetically highly variable intron, correctly matching MegaBLAST based species identification rate was found to be approximately double the highest rate yet reported for bromeliads using other barcode markers. Conclusion. In the present work, we characterize Agt1 as a novel plant DNA barcoding marker to be used for barcoding of bromeliads, a plant group with low genetic variation. Moreover, we provide a comprehensive marker sequence dataset for further use in the bromeliad research community.
Correction to: The low-copy nuclear gene Agt1 as a novel DNA barcoding marker for Bromeliaceae (2020)
Bratzel, Fabian ; Heller, Sascha ; Cyrannek, Nadine ; Paule, Juraj ; Leme, Elton M. C. ; Loreth, Anna ; Nowotny, Annika ; Kiefer, Markus ; Till, Walter ; Barfuss, Michael H. J. ; Lexer, Christian ; Koch, Marcus A. ; Zizka, Georg
Correction to: BMC Plant Biol 20, 111 (2020) https://doi.org/10.1186/s12870-020-2326-5 In the original publication [1] an incorrect version of Additional file 1 was used during typesetting. The incorrect and correct versions of Additional file 1 are available in this correction article. The original article has been updated. The publisher apologizes to the authors and readers for the inconvenience.
Resolving recalcitrant clades in the pantropical ochnaceae: insights from comparative phylogenomics of plastome and nuclear genomic data derived from targeted sequencing (2021)
Schneider, Julio Valentin ; Paule, Juraj ; Jungcurt, Tanja ; Cardoso, Domingos ; Amorim, André Márcio ; Berberich, Thomas ; Zizka, Georg
Plastid DNA sequence data have been traditionally widely used in plant phylogenetics because of the high copy number of plastids, their uniparental inheritance, and the blend of coding and non-coding regions with divergent substitution rates that allow the reconstruction of phylogenetic relationships at different taxonomic ranks. In the present study, we evaluate the utility of the plastome for the reconstruction of phylogenetic relationships in the pantropical plant family Ochnaceae (Malpighiales). We used the off-target sequence read fraction of a targeted sequencing study (targeting nuclear loci only) to recover more than 100 kb of the plastid genome from the majority of the more than 200 species of Ochnaceae and all but two genera using de novo and reference-based assembly strategies. Most of the recalcitrant nodes in the family’s backbone were resolved by our plastome-based phylogenetic inference, corroborating the most recent classification system of Ochnaceae and findings from a phylogenomic study based on nuclear loci. Nonetheless, the phylogenetic relationships within the major clades of tribe Ochnineae, which comprise about two thirds of the family’s species diversity, received mostly low support. Generally, the phylogenetic resolution was lowest at the infrageneric level. Overall there was little phylogenetic conflict compared to a recent analysis of nuclear loci. Effects of taxon sampling were invoked as the most likely reason for some of the few well-supported discords. Our study demonstrates the utility of the off-target fraction of a target enrichment study for assembling near-complete plastid genomes for a large proportion of samples.
  • 1 to 10

OPUS4 Logo

  • Contact
  • Imprint
  • Sitelinks