590 Tiere (Zoologie)
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The cleptoparasitic bee genus Triepeolus Robertson, 1901 (Hymenoptera: Apidae) is revised for species occurring in South America. A total of nine species are confirmed from the continent, of which T. tuberculifer Onuferko, Rightmyer & Roig-Alsina sp. nov. is newly described. Four new synonymies are proposed: T. aguilari Moure, 1955 syn. nov. and T. megadelphus Cockerell, 1914 syn. nov. under T. buchwaldi (Friese, 1908); T. bilineatus Cockerell, 1949 syn. nov. under T. flavipennis (Friese, 1916); and Epeolus merus Brèthes, 1909 syn. nov. under T. nemoralis (Holmberg, 1886). Males of T. alvarengai Moure, 1955 and T. rufotegularis (Ashmead, 1900) and females of T. atoconganus Moure, 1955 and T. cecilyae Packer, 2016 are described for the first time. Lectotypes are designated for the following (all originally described under Epeolus Latreille, 1802 but now recognized as Triepeolus): E. buchwaldi, E. flavipennis, E. osiriformis Schrottky, 1910 and its junior synonym E. luteipes Friese, 1916, and E. rufotegularis. Diagnoses and complete descriptions/redescriptions are provided for all species, along with a fully illustrated dichotomous identification key (with Portuguese and Spanish versions available as supplementary material) to distinguish them based on external morphological features. Additionally, known collection records and information about the ecology of the treated species are presented.
Background: Genome sequencing of all known eukaryotes on Earth promises unprecedented advances in biological sciences and in biodiversity-related applied fields such as environmental management and natural product research. Advances in long-read DNA sequencing make it feasible to generate high-quality genomes for many non–genetic model species. However, long-read sequencing today relies on sizable quantities of high-quality, high molecular weight DNA, which is mostly obtained from fresh tissues. This is a challenge for biodiversity genomics of most metazoan species, which are tiny and need to be preserved immediately after collection. Here we present de novo genomes of 2 species of submillimeter Collembola. For each, we prepared the sequencing library from high molecular weight DNA extracted from a single specimen and using a novel ultra-low input protocol from Pacific Biosciences. This protocol requires a DNA input of only 5 ng, permitted by a whole-genome amplification step.
Results: The 2 assembled genomes have N50 values >5.5 and 8.5 Mb, respectively, and both contain ∼96% of BUSCO genes. Thus, they are highly contiguous and complete. The genomes are supported by an integrative taxonomy approach including placement in a genome-based phylogeny of Collembola and designation of a neotype for 1 of the species. Higher heterozygosity values are recorded in the more mobile species. Both species are devoid of the biosynthetic pathway for β-lactam antibiotics known in several Collembola, confirming the tight correlation of antibiotic synthesis with the species way of life.
Conclusions: It is now possible to generate high-quality genomes from single specimens of minute, field-preserved metazoans, exceeding the minimum contig N50 (1 Mb) required by the Earth BioGenome Project.
The use of integrative taxonomy has confirmed the existence of a new distinct crab species, cryptic, within the group of the former genus Liocarcinus, now Polybius, closely related to P. holsatus, P. vernalis and P. marmoreus. Previous reports have considered it to be the Atlantic form of P. vernalis, or as a species “affinis” or “comparable to” P. holsatus. Diagnostic morphological characters are presented for identification and the morphological variability in these species, mainly within P. vernalis (the most related) is analysed. Furthermore, based on molecular and other previous data, a new combination (genus change) is proposed. This new species, Polybius dioscurus sp. nov., lives on infralittoral sandy bottoms, coexisting with the other species mentioned, in the temperate and subtropical zone of the North Atlantic Ocean, including the Alboran Sea (westernmost Mediterranean).
Two new species of Strandesia Stuhlmann, 1888 are described from the northeastern part of Thailand: S. karanovicae sp. nov. and S. amnatcharoenensis sp. nov. Strandesia karanovicae is characterized by a tumid carapace in dorsal view, a small anterior overlap, the absence of a dorso-subapical seta on the first segment of the antennule (A1), a large aesthetasc Y on the antenna, an α seta shape with a needle-like tip and a large β seta on the mandibular palp (Md-palp), serrated bristles on the maxilla, a long h1 seta on the second thoracopod (T2) and a slender caudal ramus (CR). Strandesia amnatcharoenensis has a small compressed posterior part of the right valves (RV) which makes it closely related to S. pholpunthini Savatenalinton, 2015. The new species can be distinguished primarily by a considerably small anterior overlap of the left valve over the right valve (RV), a postero-ventral flange of the RV, a remarkably large claw Ga of the CR and the chaetotaxy of the limbs, especially A1, Md-palp and T2. In addition, in the present study, the sexual population of S. martensi Savatenalinton, 2015 is recorded for the first time, and thus the first description of the male is provided here. Moreover, the morphological examination of both males and females revealed differences between asexual and sexual females and also points to the fact that S. martensi is a mixed reproduction species. This is the first record of the mixed reproductive mode in the genus Strandesia or even in the Cypricercinae.
The snake pipefish, Entelurus aequoreus (Linnaeus, 1758), is a slender, up to 60 cm long, northern Atlantic fish that dwells in open seagrass habitats and has recently expanded its distribution range. The snake pipefish is part of the family Syngnathidae (seahorses and pipefish) that has undergone several characteristic morphological changes, such as loss of pelvic fins and elongated snout. Here, we present a highly contiguous, near chromosome-scale genome of the snake pipefish assembled as part of a university master’s course. The final assembly has a length of 1.6 Gbp in 7,391 scaffolds, a scaffold and contig N50 of 62.3 Mbp and 45.0 Mbp and L50 of 12 and 14, respectively. The largest 28 scaffolds (>21 Mbp) span 89.7% of the assembly length. A BUSCO completeness score of 94.1% and a mapping rate above 98% suggest a high assembly completeness. Repetitive elements cover 74.93% of the genome, one of the highest proportions so far identified in vertebrate genomes. Demographic modeling using the PSMC framework indicates a peak in effective population size (50 – 100 kya) during the last interglacial period and suggests that the species might largely benefit from warmer water conditions, as seen today. Our updated snake pipefish assembly forms an important foundation for further analysis of the morphological and molecular changes unique to the family Syngnathidae.
Highlights
• Genomes for all five Natrix species, two represented by two distinct subspecies each, were sequenced.
• Two genomes were de-novo assembled to their 1.7 Gb length with a contig N50 of 4.6 Mbp and 1.5 Mbp.
• Evidence for interspecific hybridization, both between allopatric and widely sympatric species.
• Fossil-calibrated molecular clock using genomes indicates that species are ancient several million-year-old lineages.
• Our findings imply that speciation took place despite continued gene flow.
Abstract
Understanding speciation is one of the cornerstones of biological diversity research. Currently, speciation is often understood as a continuous process of divergence that continues until genetic or other incompatibilities minimize or prevent interbreeding. The Palearctic snake genus Natrix is an ideal group to study speciation, as it comprises taxa representing distinct stages of the speciation process, ranging from widely interbreeding parapatric taxa through parapatric species with very limited gene flow in narrow hybrid zones to widely sympatric species. To understand the evolution of reproductive isolation through time, we have sequenced the genomes of all five species within this genus and two additional subspecies. We used both long-read and short-read methods to sequence and de-novo-assemble two high-quality genomes (Natrix h. helvetica, Natrix n. natrix) to their 1.7 Gb length with a contig N50 of 4.6 Mbp and 1.5 Mbp, respectively, and used these as references to assemble the remaining short-read-based genomes. Our phylogenomic analyses yielded a well-supported dated phylogeny and evidence for a surprisingly complex history of interspecific gene flow, including between widely sympatric species. Furthermore, evidence for gene flow was also found for currently allopatric species pairs. Genetic exchange among these well-defined, distinct, and several million-year-old reptile species emphasizes that speciation and maintenance of species distinctness can occur despite continued genetic exchange.
The genus Jambu gen. nov. is proposed based on two new species: Jambu paru gen. et sp. nov. and Jambu manoa gen. et sp. nov. Hapalopus butantan is transferred to Jambu; consequently, Jambu butantan gen. et comb. nov. is proposed. The geographic distribution of J. butantan is extended on the basis of new material collected. The new genus and the new species are here diagnosed, described and illustrated. The shape of the genitalia of Jambu resembles that of Hapalopini but differs from most of them by the presence of type IV urticating setae. The presence of this type of urticating setae allows us to hypothesize that this new genus is phylogenetically related with Grammostolini. Males of Jambu differ from those of other genera of Grammostolini by the presence of a paraembolic apophysis on the palpal bulb. Females also differ from those of other Grammostolini by the spermathecae morphology, with one medial lamp-shaped or heart-shaped receptacle. The homology of some features and the taxonomic placement of the new genus are discussed.
The ant genus Syscia Roger, 1861 is a cryptobiotic group of the subfamily Dorylinae. In this study, eight species of this genus from Asia are recognized, including two new species, Syscia arcodorsa sp. nov. and S. zhoui sp. nov., both described from Guangxi in China. In addition, Cerapachys guizhouensis Zhou, 2006 is redescribed and transferred to Syscia as S. guizhouensis (Zhou, 2006) comb. nov. The species Syscia typhla Roger, 1861 is removed from the ant fauna of China. Lastly, a key to species of Syscia from Asia based on the worker caste is presented.
Four new species of the jumping spider genus Stenaelurillus Simon, 1886 are described from India: Stenaelurillus feral Tripathi, Kuni & Kadam sp. nov. (♂, from the Eastern Coastline), S. naldurg Kuni, Kadam & Tripathi sp. nov. (♂♀, from the Deccan Plateau), S. judithbleisterae Kadam, Tripathi & Kuni sp. nov. (♂♀, from the Western Ghats) and S. solapur Kuni, Tripathi & Kadam sp. nov. (♂♀, from the Deccan Plateau). Detailed diagnoses, descriptions, illustrations, natural history and distribution map are provided. Additionally, new locality records for the other five species within the states are presented and mapped.