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Using an integrative approach (morphology of the adult and larvae, bioacoustics, osteology, karyotype, and molecular data), we described a new tetraploid species of Odontophrynus to the Mantiqueira mountain range, in southeastern Brazil. The data suggest that Odontophrynus toledoi sp. nov., O. juquinha and Odontophrynus sp. (aff. juquinha) comprise a clade with specimens distributed along three distinct mountain ranges in Brazil: Mantiqueira (O. toledoi sp. nov.) and Espinhaço (O. juquinha) mountains, both in southeastern Brazil, and Diamantina Plateau (O. aff. juquinha), in northeastern Brazil. The new species is morphologically similar and closely related to O. juquinha, but is distinguished in morphology (both adult and larval), karyotype (O. toledoi sp. nov. is tetraploid and O. juquinha is diploid), and corroborated by phylogenetic inferences. We also show that these species do not exchange haplotypes in the 16s gene. Furthermore, although the raw acoustic parameters of Odontophrynus toledoi sp. nov. and O. juquinha overlap at the limits of their ranges, we found a clear difference in the acoustic space structure.
The Western Ghats of India is considered one of the richest biodiversity hotspots in the world. Documenting scorpion diversity has always been of paramount importance due to their species richness, ecological role and endemism, which calls for conservation priority. Scorpion diversity of the Western Ghats is probably underestimated given the ancestry of the group, and more field work in the region is very likely to uncover numerous undescribed taxa. Several new Indian species have recently been discovered in the scorpion genus Isometrus Ehrenberg, 1828 (Scorpiones: Buthidae). In this communication, we resurrect I. sankeriensis Tikader & Bastawade, 1983 and describe two new species from the Western Ghats of India, I. nakshatra sp. nov. and I. wayanadensis sp. nov., using an integrative taxonomic approach. In order to replace the lost holotype of I. sankeriensis, we designate a neotype and reassess the identity of this species. This work elevates the number of species of Isometrus found in India to eight and we expect many more scorpion discoveries from India with continued research.
The taxonomic status of Alcyonium aurantiacum Quoy & Gaimard, 1833, an octocoral endemic to New Zealand, was reviewed through morpho-molecular data comparisons in an integrative approach. Molecular phylogenetic analyses (nuclear 28S and mitochondrial mtMutS) resolved New Zealand taxa as more closely related to other genera and nominal Alcyonium Linnaeus, 1758 from South America than to the genus’ North Atlantic type species. Due to low genetic variation, species delimitation relied predominantly on identifying consistent differences in sclerite and colony morphology. The former A. aurantiacum is reassigned to Kotatea gen. nov. as K. aurantiaca gen. et comb. nov. and seven new species are described in this genus (K. amicispongia gen. et sp. nov., K. lobata gen. et sp. nov., K. kapotaiora gen. et sp. nov., K. kurakootingotingo gen. et sp. nov., K. niwa gen. et sp. nov., K. raekura gen. et sp. nov., and K. teorowai gen. et sp. nov.). Three new species in Ushanaia gen. nov. are also described (U. ferruginea gen. et sp. nov., U. fervens gen. et sp. nov. and U. solida gen. et sp. nov. ). These descriptions increase our understanding of New Zealand’s endemic octocoral diversity and contribute to ongoing systematic revisions of Alcyonium.
Based on an integrative taxonomic approach, a new species of the genus Loxosceles Heineken & Lowe, 1832, is described from the state of Hidalgo, Mexico. Loxosceles tolantongo sp. nov. is described based on DNA barcoding using cytochrome c oxidase subunit 1 (CO1) and internal transcribed spacer 2 (ITS2), and morphology. For species delimitation, four molecular methods were implemented: 1) corrected p-distances under neighbor joining (NJ); 2) automatic barcode gap discovery (ABGD); 3) general mixed yule coalescent model (GMYC) and 4) Bayesian Poisson tree processes (bPTP). The new species morphologically resembles L. jaca, another species from Hidalgo, but there are morphological differences mainly in the tibiae of the male palp, the seminal receptacles of the females and also the high genetic p-distances. CO1 was more informative than ITS2 for the genetic separation; however, both concatenated genes (CO1 + ITS2) present robust evidence for species delimitation. Loxosceles tolantongo sp. nov. is considered a unique species for four reasons: 1) it can be diagnosed and distinguished by morphological characters (of the male palps mainly, but also of the seminal receptacles of the females); 2) the genetic p-distances with CO1 were high (>10%); 3) the molecular species delimitation methods were congruent under CO1 and CO1 + ITS2; and 4) under CO1 and CO1 + ITS2, the new species is a putative sister group of L. jaca + L. tenango.
Initial analyses of DNA barcode data from Norwegian populations attributed to the water mite Lebertia porosa Thor, 1900 revealed large genetic divergence and potentially cryptic species-level diversity. We used one mitochondrial (COI) and two nuclear markers (18S and 28S) as well as comparative morphological analysis to redefine Lebertia porosa, and to further investigate the species boundaries of Norwegian populations of its close relatives. Our results show that Lebertia porosa, as currently defined, consists of multiple species that can be separated by molecular and morphological characteristics. Although we document the presence of the endosymbiotic bacteria Wolbachia in two out of eight screened genetic lineages, we find no evidence of intraspecific genetic divergence caused by Wolbachia infections. The assignment of one of the genetic lineages to the nominal species could be made through morphological comparisons of specimens from the L. porosa type locality with the syntypes of L. obscura Thor, 1900. Thus, the diagnosis of L. porosa is emended and a neotype is defined. Two of the remaining genetic lineages could be assigned to existing names previously regarded as junior synonyms of L. porosa, namely L. obscura (lectotype defined here) and L. gibbosa Lundblad, 1926, which are both redescribed. The outstanding genetic lineages are unnamed, but from our work we conclude that the taxa Lebertia porosa britannica Thor, 1906, L. porosa dorsalis Thor, 1906, and L. porosa italica Thor, 1906 are nomina dubia that cannot be considered junior synonyms of L. porosa as proposed by K. Viets (1956). We also consider L. vigintimaculata Thor, 1900 a nomen dubium, probably identical to L. obscura.
Introduction:
The evolutionary patterns of symbiotic organisms are inferred using cophylogenetic methods. Congruent phylogenies indicate cospeciation or host-switches to closely-related hosts, whereas incongruent topologies indicate independent speciation. Recent studies suggest that coordinated speciation is a rare event, and may not occur even in the highly specialized associations. The cospeciation hypothesis was mainly tested for free-living mutualistic associations, such as plant-pollinator interactions, and host-parasitic systems but was rarely tested on obligate, mutualistic associations involving intimate physiological interactions. Symbionts with lower partner selectivity may not experience coordinated speciation due to frequent switching of partners. On the other hand, symbionts with high partner selectivity may influence each other’s evolution owing to the highly interdependent lifestyles. Symbiont association patterns are also influenced by habitat and it has been proposed that symbiotic interactions are stronger in warm regions as compared to cooler regions (also referred as latitudinal gradient of biotic specialization). This hypothesis however, has recently been challenged and it has been suggested that a gradient of biotic specialization may not exist at all. Reliable species concepts are a prerequisite for understanding the association and evolutionary patterns of symbiotic organisms. The species concepts of many groups traditionally relied on the morphological species concept, which may not be adequate for distinguishing species due to the: i) homoplasious nature of morphological characters, an due to the inability to distinguish cryptic species. Thus phylogenetic species concept along with coalescent-based species delimitation approaches, which utilize molecular data for inferring species boundaries have been used widely for resolving taxonomic relationships. Lichens are obligatory symbiotic associations consisting of a fungal partner (mycobiont) and one or more photosynthetic partners, algae, and/or cyanobacteria (photobionts). I used the lichen forming fungal genus Protoparmelia as my study system, which consists of ~25-30 previously described species inhabiting different habitats, from the arctic to the tropics. This makes Protoparmelia an ideal system to explore the association and evolutionary patterns across different macrohabitats.
Objectives:
The objectives of this thesis were to 1. Elucidate the phylogenetic position of Protoparmelia within Lecanorales, and infer the monophyly of Protoparmelia; 2. Understand species diversity within Protoparmelia s.str. using coalescent-based species delimitation approaches; and 3. To identify the Trebouxia species associated with Protoparmelia using phylogenetic and species delimitation approaches and to infer the association and cophylogenetic patterns Protoparmelia and Trebouxia in different macrohabitats.
Results and discussion:
Chapter 1: Taxonomic position of Protoparmelia
In the first part of this study I explored the taxonomic position of Protoparmelia within the order Lecanorales. Overall this study included 54 taxa from four families, sequenced at five loci (178 sequences). I found Protoparmelia to be polyphyletic and sister to Parmeliaceae.
Chapter 2: Multilocus phylogeny and species delimitation of Protoparmelia spp.
In this part of the study, I identified and delimited the Protoparmelia species forming a monophyletic clade sister to Parmeliaceae i.e., Protoparmelia sensu stricto group, based on the multilocus phylogeny and coalescent-based species delimitation approaches. I included 18 previously described and three unidentified Protoparmelia species, which represents ~70% of the total described species, and 73 other taxa, sequenced at six loci. I found that the sensu stricto group comprised of 25 supported clades instead of 12 previously described Protoparmelia species. I tested the speciation probabilities of these 25 clades using species delimitation softwares BP&P and spedeSTEM. I found nine previously unrecognized lineages in Protoparmelia and I propose the presence of at least 23 species for Protoparmelia s.str., in contrast to the 12 described species included in the study.
Chapter 3: Association and cophylogenetic patterns of Protoparmelia and its symbiotic partner Trebouxia
...
With six valid species, Luciobrotula is a small genus of the family Ophidiidae, commonly known as cusk-eels. They are benthopelagic fishes occurring at depths ranging from 115–2300 m in the Atlantic, Indian, and Pacific Oceans. Among them, Luciobrotula bartschi is the only known species in the West Pacific. Three specimens of Luciobrotula were collected from the Philippine Sea, Bismarck Sea, and Solomon Sea in the West Pacific during the AURORA, PAPUA NIUGINI, and MADEEP expeditions under the Tropical Deep-Sea Benthos program, and all of them were initially identified as L. bartschi. Subsequent examination with integrative taxonomy indicates that they belong to two distinct species, with the specimen collected from the Solomon Sea representing a new species, which is described here. In terms of morphology, Luciobrotula polylepis sp. nov. differs from its congeners by having a relatively longer lateral line (end of the lateral line below the 33rd dorsal-fin ray) and fewer vertebrae (abdominal vertebrae 13, total vertebrae 50). In the inferred COI gene tree, the two western Pacific species of Luciobrotula do not form a monophyletic group. The genetic K2P distance between the two species is 13.8% on average at the COI locus.
The small conoidean Hemilienardia ocellata is one of the easily recognizable Indo-Pacific “turrids”, primarily because of its remarkable eyespot colour pattern. Morphological and molecular phylogenetic analyses revealed four species that share this “characteristic” colour pattern but demonstrate consistent differences in size and shell proportions. Three new species – Hemilienardia acinonyx sp. nov. from the Philippines, H. lynx sp. nov. from Papua New Guinea and H. pardus sp. nov. from the Society and Loyalty Islands – are described based on the results of phylogenetic analyses. Although the H. ocellata species complex clade falls in a monophyletic Hemilienardia, H. ocellata and H. acinonyx sp. nov. possess a radula with semi-enrolled or notably flattened triangular marginal teeth, a condition that diverges substantially from the standard radular morphology of Hemilienardia and other raphitomids.
In this review (third part), several species within the Nassarius pauperus complex from the eastern Indian Ocean and western Pacific are treated, including a revised concept of Nassa paupera Gould, 1850, type species of the genus Reticunassa Iredale, 1936. In the most recent taxonomic revision, several species had been synonymized with Nassarius pauperus (Gould, 1850), despite distinctive differences among these species in shell morphology. We sequenced a fragment of the mitochondrial COI and the nuclear 28S genes of all available Nassarius pauperus complex species. Automatic barcode gap discovery and reciprocal monophyly were applied to propose species delimitation hypotheses and to support a new concept of the genus. Using morphological and molecular characters, Reticunassa is elevated to full genus rank. Six new species are described: Reticunassa visayaensis sp. nov., R. poppeorum sp. nov., R. annabolteae sp. nov., R. goliath sp. nov., R. intrudens sp. nov. and R. thailandensis sp. nov., while R. tringa (Souverbie, 1864) is recognized as a valid species.
Despite several decades of active research, there are still substantial gaps in the knowledge of parasitoid wasps in Australia, with many families and genera yet to be revised using modern approaches and only a fraction of the estimated fauna currently described. The genus Glyptapanteles Ashmead, 1904 is a member of the subfamily Microgastrinae (Hymenoptera: Braconidae) and all species in the subfamily are lepidopteran parasitoids. The genus previously contained only three species known from Australia: G. deliasa Austin & Dangerfield, 1992, G. drioplanetus Fagan-Jeffries & Austin, 2021 and G. mnesampela Austin, 2000. To undertake a revision of this morphologically-conserved group in Australia, we used a combination of molecular (cytochrome oxidase subunit one (COI) and wingless genes) and minimal morphological data to delimit and describe an additional 31 species: G. austini Fagan-Jeffries & Bird sp. nov. and the following 30 species all authored by Fagan-Jeffries, Bird & Austin: G. albigena sp. nov., G. andamookaensis sp. nov., G. arcanus sp. nov., G. aspersus sp. nov., G. austrinus sp. nov., G. baylessi sp. nov., G. bradfordae sp. nov., G. cooperi sp. nov., G. doreyi sp. nov., G. dowtoni sp. nov., G. eburneus sp. nov., G. erucadesolator sp. nov., G. ferrugineus sp. nov., G. foraminous sp. nov., G. goodwinnoakes sp. nov., G. guzikae sp. nov., G. harveyi sp. nov., G. kingae sp. nov., G. kittelae sp. nov., G. kurandaensis sp. nov., G. lambkinae sp. nov., G. lessardi sp. nov., G. mouldsi sp. nov., G. niveus sp. nov., G. rixi sp. nov., G. rodriguezae sp. nov., G. ruhri sp. nov., G. sanniopolus sp. nov., G. vergrandiacus sp. nov. and G. wrightae sp. nov. We provide a key to species groups and to the species able to be identified on morphological characters alone. Additionally, we provide a brief discussion of the difficulties in describing small, morphologically conserved wasps and the challenges associated with revising the taxonomy of hyperdiverse taxa in the context of the planned mission of Taxonomy Australia to accelerate the documentation of Australia’s biodiversity.