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The scientific innovation process embraces the steps from problem definition through the development and evaluation of innovative solutions to their successful exploitation. The challenges imposed by this process can be answered by the creation of a powerful and flexible next-generation e-Science infrastructure, which exploits leading edge information and knowledge technologies and enables a comprehensive and intelligent means of supporting this process. This paper describes our vision of a Knowledge-based eScience infrastructure, which is based on the results of an in-depth study of the researchers requirements. Furthermore, it introduces the Fraunhofer e-Science Cockpit as a first implementation of our vision.