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- Hfq (1)
Institute
Halwe, Sandro ; Kupke, Alexandra ; Vanshylla, Kanika ; Liberta, Falk ; Grüll, Henning ; Zehner, Matthias ; Rohde, Cornelius ; Krähling, Verena ; Gellhorn Serra, Michelle ; Kreer, Christoph ; Klüver, Michael ; Sauerhering, Lucie ; Schmidt, Jörg ; Cai, Zheng ; Han, Fei ; Young, David ; Yang, Guangwei ; Widera, Marek ; Koch, Manuel ; Werner, Anke ; Kämper, Lennart ; Becker, Nico ; Marlow, Michael S. ; Eickmann, Markus ; Ciesek, Sandra ; Schiele, Felix ; Klein, Florian ; Becker, Stephan
Despite the recent availability of vaccines against severe acute respiratory syndrome coronavirus type 2 (SARS-CoV-2), there is an urgent need for specific anti-SARS-CoV-2 drugs. Monoclonal neutralizing antibodies are an important drug class in the global fight against the SARS-CoV-2 pandemic due to their ability to convey immediate protection and their potential to be used as both prophylactic and therapeutic drugs. Clinically used neutralizing antibodies against respiratory viruses are currently injected intravenously, which can lead to suboptimal pulmonary bioavailability and thus to a lower effectiveness. Here we describe DZIF-10c, a fully human monoclonal neutralizing antibody that binds the receptor-binding domain of the SARS-CoV-2 spike protein. DZIF-10c displays an exceptionally high neutralizing potency against SARS-CoV-2, retains full activity against the variant of concern (VOC) B.1.1.7 and still neutralizes the VOC B.1.351, although with reduced potency. Importantly, not only systemic but also intranasal application of DZIF-10c abolished the presence of infectious particles in the lungs of SARS-CoV-2 infected mice and mitigated lung pathology when administered prophylactically. Along with a favorable pharmacokinetic profile, these results highlight DZIF-10c as a novel human SARS-CoV-2 neutralizing antibody with high in vitro and in vivo antiviral potency. The successful intranasal application of DZIF-10c paves the way for clinical trials investigating topical delivery of anti-SARS-CoV-2 antibodies.
Werner, Inge ; Aldrich, Annette ; Becker, Benjamin ; Becker, Dennis ; Brinkmann, Markus ; Burkhardt, Michael ; Caspers, Norbert ; Campiche, Sophie ; Chèvre, Nathalie ; Düring, Rolf‑Alexander ; Escher, Beate I. ; Fischer, Fabian ; Giebner, Sabrina ; Heye, Katharina ; Hollert, Henner ; Junghans, Marion ; Kienle, Cornelia ; Knauer, Katja ; Korkaric, Muris ; Märkl, Veronika ; Muncke, Jane ; Oehlmann, Jörg ; Reifferscheid, Georg ; Rensch, Daniel ; Schäffer, Andreas ; Schiwy, Sabrina ; Schwarz, Simon ; Segner, Helmut ; Simon, Eszter ; Triebskorn, Rita ; Vermeirssen, Etiënne L. M. ; Wintgens, Thomas ; Zennegg, Markus
This report provides a brief review of the 20th annual meeting of the German Language Branch of the Society of Environmental Toxicology and Chemistry (SETAC GLB) held from September 7th to 10th 2015 at ETH (Swiss Technical University) in Zurich, Switzerland. The event was chaired by Inge Werner, Director of the Swiss Centre for Applied Ecotoxicology (Ecotox Centre) Eawag-EPFL, and organized by a team from Ecotox Centre, Eawag, Federal Office of the Environment, Federal Office of Agriculture, and Mesocosm GmbH (Germany). Over 200 delegates from academia, public agencies and private industry of Germany, Switzerland and Austria attended and discussed the current state of science and its application presented in 75 talks and 83 posters. In addition, three invited keynote speakers provided new insights into scientific knowledge ‘brokering’, and—as it was the International Year of Soil—the important role of healthy soil ecosystems. Awards were presented to young scientists for best oral and poster presentations, and for best 2014 master and doctoral theses. Program and abstracts of the meeting (mostly in German) are provided as Additional file 1.
Becker, Jeremias M. ; Ganatra, Akbar A. ; Kandie, Faith Jebiwot ; Mühlbauer, Lina ; Ahlheim, Jörg ; Brack, Werner ; Torto, Baldwyn ; Agola, Eric L. ; McOdimba, Francis ; Hollert, Henner ; Fillinger, Ulrike ; Liess, Matthias
Schistosomiasis is a severe neglected tropical disease caused by trematodes and transmitted by freshwater snails. Snails are known to be highly tolerant to agricultural pesticides. However, little attention has been paid to the ecological consequences of pesticide pollution in areas endemic for schistosomiasis, where people live in close contact with non-sanitized freshwaters. In complementary laboratory and field studies on Kenyan inland areas along Lake Victoria, we show that pesticide pollution is a major driver in increasing the occurrence of host snails and thus the risk of schistosomiasis transmission. In the laboratory, snails showed higher insecticide tolerance to commonly found pesticides than associated invertebrates, in particular to the neonicotinoid Imidacloprid and the organophosphate Diazinon. In the field, we demonstrated at 48 sites that snails were present exclusively in habitats characterized by pesticide pollution and eutrophication. Our analysis revealed that insensitive snails dominated over their less tolerant competitors. The study shows for the first time that in the field, pesticide concentrations considered “safe” in environmental risk assessment have indirect effects on human health. Thus we conclude there is a need for rethinking the environmental risk of low pesticide concentrations and of integrating agricultural mitigation measures in the control of schistosomiasis.
Prescribing practice of pregabalin/gabapentin in pain therapy : an evaluation of German claim data
(2019)
Viniol, Annika ; Ploner, Tina ; Hickstein, Lennart ; Haasenritter, Jörg ; Klein, Karl Martin ; Walker, Jochen ; Donner-Banzhoff, Norbert ; Becker, Annette
Objectives: To analyse the prevalence and incidence of pregabalin and gabapentin (P/G) prescriptions, typical therapeutic uses of P/G with special attention to pain-related diagnoses and discontinuation rates.
Design: Secondary data analysis.
Setting: Primary and secondary care in Germany.
Participants: Four million patients in the years 2009–2015 (anonymous health insurance data).
Intervention: None.
Primary and secondary outcome measures: P/G prescribing rates, P/G prescribing rates associated with pain therapy, analysis of pain-related diagnoses leading to new P/G prescriptions and the discontinuation rate of P/G.
Results: In 2015, 1.6% of insured persons received P/G prescriptions. Among the patients with pain first treated with P/G, as few as 25.7% were diagnosed with a typical neuropathic pain disorder. The remaining 74.3% had either not received a diagnosis of neuropathic pain or showed a neuropathic component that was pathophysiologically conceivable but did not support the prescription of P/G. High discontinuation rates were observed (85%). Among the patients who had discontinued the drug, 61.1% did not receive follow-up prescriptions within 2 years.
Conclusion: The results show that P/G is widely prescribed in cases of chronic pain irrespective of neuropathic pain diagnoses. The high discontinuation rate indicates a lack of therapeutic benefits and/or the occurrence of adverse effects.
Maier, Lisa-Katharina ; Benz, Juliane ; Fischer, Susan ; Alstetter, Martina ; Jaschinski, Katharina ; Hilker, Rolf ; Becker, Anke ; Allers, Thorsten ; Soppa, Jörg ; Marchfelder, Anita
Members of the Sm protein family are important for the cellular RNA metabolism in all three domains of life. The family includes archaeal and eukaryotic Lsm proteins, eukaryotic Sm proteins and archaeal and bacterial Hfq proteins. While several studies concerning the bacterial and eukaryotic family members have been published, little is known about the archaeal Lsm proteins. Although structures for several archaeal Lsm proteins have been solved already more than ten years ago, we still do not know much about their biological function, however one can confidently propose that the archaeal Lsm proteins will also be involved in RNA metabolism. Therefore, we investigated this protein in the halophilic archaeon Haloferax volcanii. The Haloferax genome encodes a single Lsm protein, the lsm gene overlaps and is co-transcribed with the gene for the ribosomal L37.eR protein. Here, we show that the reading frame of the lsm gene contains a promoter which regulates expression of the overlapping rpl37R gene. This rpl37R specific promoter ensures high expression of the rpl37R gene in exponential growth phase. To investigate the biological function of the Lsm protein we generated a lsm deletion mutant that had the coding sequence for the Sm1 motif removed but still contained the internal promoter for the downstream rpl37R gene. The transcriptome of this deletion mutant was compared to the wild type transcriptome, revealing that several genes are down-regulated and many genes are up-regulated in the deletion strain. Northern blot analyses confirmed down-regulation of two genes. In addition, the deletion strain showed a gain of function in swarming, in congruence with the up-regulation of transcripts encoding proteins required for motility.
Miesbach, Wolfgang ; Kittler, Sabine ; Bauhofer, Artur ; Königs, Christoph ; Becker, Thomas ; Nemes, László ; Staus, Alexander ; Schüttrumpf, Jörg
Introduction: Prophylaxis with factor VIII (FVIII) concentrates in children with haemophilia A (HA) is current standard of care. The benefit of prophylactic treatment for adult HA patients is not commonly accepted.
Aim: To investigate the benefit of prophylaxis over on‐demand treatment in adult and elderly patients with severe or non‐severe HA in a real‐life setting.
Methods: Data from 163 patients comprising 1202 patient‐years were evaluated for 7.5 (±5.3) years. The effects on the annual bleeding rate (ABR, including spontaneous and traumatic bleeds) of treatment with a plasma‐derived FVIII concentrate, the patient's age and disease severity were investigated. The effect of changing the treatment from on demand to continuous prophylaxis on the patients’ ABRs was further analysed.
Results: Prophylaxis had the greatest effect on the ABRs of patients of any age with severe or non‐severe HA. The difference in ABR of all patients treated on demand (median 31.4; interquartile range (IQR) 27.6; N = 83) compared with those treated prophylactically (median 1.3; IQR 3.6; N = 122) was statistically significant (P < .05), even for patients with non‐severe HA (median 8.4; IQR 15.5; N = 11) vs median 1.5; IQR 4.2 (N = 17), P < .05). Patients, aged up to 88 years, switching from on demand to continuous prophylaxis showed the lowest median ABR (1.1; N = 51) after their regimen change.
Conclusion: Any (even low‐frequency) prophylaxis results in lower ABR than on‐demand treatment. Patients switching to prophylaxis benefitted the most, irrespective of age or HA severity. Prophylactic treatment—even tertiary—is the regimen of choice for patients of any age, including elderly patients, with severe or non‐severe HA.
Aamodt, Kenneth ; Abel, N. ; Abeysekara, U. ; Abrahantes Quintana, A. ; Abramyan, A. ; Adamová, Dagmar ; Aggarwal, Madan Mohan ; Aglieri Rinella, Gianluca ; Agocs, A.G. ; Aguilar Salazar, S. ; Ahammed, Zubayer ; Ahmad, A. ; Ahmad, Nazeer ; Ahn, Sang Un ; Akimoto, R. ; Akindinov, Alexander ; Aleksandrov, Dmitry ; Alessandro, Bruno ; Alfaro Molina, Jose Ruben ; Alici, Andrea ; Almaráz Aviña, E. ; Alme, Johan ; Alt, Torsten ; Altini, V. ; Altinpinar, Sedat ; Andrei, Cristian ; Andronic, Anton ; Anelli, G. ; Angelov, V. ; Anson, Christopher Daniel ; Antičić, Tome ; Antinori, Federico ; Antinori, S. ; Antipin, K. ; Antończyk, Dariusz ; Antonioli, Pietro ; Anzo, A. ; Aphecetche, Laurent Bernard ; Appelshäuser, Harald ; Arcelli, Silvia ; Arceo, R. ; Arend, A. ; Armesto, Néstor ; Arnaldi, Roberta ; Aronsson, Tomas Robert ; Arsene, Ionut Cristian ; Asryan, A. ; Augustinus, Andre ; Averbeck, Ralf Peter ; Awes, T.C. ; Äystö, J. ; Azmi, Mohd Danish ; Bablok, Sebastian ; Bach, Matthias ; Badalà, Angela ; Baek, Yong Wook ; Bagnasco, Stefano ; Bailhache, Raphaëlle ; Bala, Remu ; Baldisseri, Alberto ; Baldit, A. ; Bán, J. ; Barbera, Roberto ; Barnaföldi, Gergely Gábor ; Barnby, L. ; Barret, Valerie ; Bartke, Jerzy ; Barile, Francesco ; Basile, Maurizio ; Basmanov, V. ; Bastid, Nicole ; Bathen, Bastian ; Batigne, Guillaume ; Batyunya, Boris ; Baumann, C. ; Bearden, Ian Gardner ; Becker, B. ; Belikov, Iouri ; Bellwied, Rene ; Belmont-Moreno, Ernesto ; Belogianni, A. ; Benhabib, L. ; Beolè, Stefania ; Berceanu, Ionela ; Bercuci, Alexandru ; Berdermann, E. ; Berdnikov, Yaroslav ; Betev, Latchezar ; Bhasin, Anju ; Bhati, Ashok Kumar ; Bianchi, Livio ; Bianchi, Nicola ; Bianchin, Chiara ; Bielčík, Jaroslav ; Bielčíková, Jana ; Bilandzic, Ante ; Bimbot, L. ; Biolcati, E. ; Blanc, A. ; Blanco, Fernando ; Blanco, Fernando ; Blau, Dmitry S. ; Blume, Christoph ; Boccioli, M. ; Bock, N. ; Bogdanov, Alexey A. ; Bøggild, Hans ; Bogolyubsky, M. ; Bohm, J. ; Boldizsár, László ; Bombara, Marek ; Bombonati, C. ; Bondila, M. ; Borel, Hervé ; Borisov, A. ; Bortolin, C. ; Bose, S. ; Bosisio, L. ; Bossú, Francesco ; Botje, Michiel ; Böttger, Stefan ; Bourdaud, G. ; Boyer, B. ; Braun, M. ; Braun-Munzinger, Peter ; Bravina, L. ; Bregant, Marco ; Breitner, Timo ; Bruckner, G. ; Brun, René ; Bruna, Elena ; Bruno, Giuseppe Eugenio ; Budnikov, Dmitry ; Büsching, Henner ; Bunčić, Predrag ; Busch, Oliver ; Buthelezi, Edith Zinhle ; Caffarri, Davide ; Cai, Xiao ; Caines, Helen Louise ; Calvo, E. ; Camacho, E. ; Camerini, Paolo ; Campbell, M. ; Canoa Roman, Veronica ; Capitani, G.P. ; Cara Romeo, G. ; Carena, Francesco ; Carena, Wisla ; Carminati, F. ; Casanova Díaz, A. ; Caselle, M. ; Castillo Castellanos, Javier Ernesto ; Castillo Hernandez, J.F. ; Catanescu, V. ; Cattaruzza, E. ; Cavicchioli, Costanza ; Cerello, Piergiorgio ; Chambert, V. ; Chang, B. ; Chapeland, Sylvain ; Charpy, A. ; Charvet, Jean-Luc Fernand ; Chattopadhyay, S. ; Chattopadhyay, S. ; Cherney, Michael Gerard ; Cheshkov, Cvetan Valeriev ; Cheynis, Brigitte ; Chiavassa, E. ; Chibante Barroso, Vasco Miguel ; Chinellato, David Dobrigkeit ; Chochula, Peter ; Choi, Kyungeon ; Chojnacki, Marek ; Christakoglou, Panagiotis ; Christensen, Christian Holm ; Christiansen, Peter L. ; Chujo, Tatsuya ; Chuman, F. ; Cicalò, Corrado ; Cifarelli, Luisa ; Cindolo, Federico ; Cleymans, Jean Willy Andre ; Cobanoglu, O. ; Coffin, J.-P. ; Coli, S. ; Colla, A. ; Conesa Balbastre, Gustavo ; Conesa del Valle, Zaida ; Conner, E.S. ; Constantin, P. ; Contin, Giacomo ; Contreras Nuno, Jesus Guillermo ; Corrales Morales, Yasser ; Cormier, Thomas Michael ; Cortese, Pietro ; Cortés Maldonado, Ismael ; Cosentino, Mauro Rogerio ; Costa, Filippo ; Cotallo, M.E. ; Crescio, E. ; Crochet, Philippe ; Cuautle Flores, Eleazar ; Cunqueiro Mendez, Leticia ; Cussonneau, J. ; Dainese, Andrea ; Dalsgaard, H.H. ; Danu, Andrea ; Das, Indranil ; Dash, Ajay Kumar ; Dash, Sadhana ; de Barros, G.O.V. ; De Caro, Annalisa ; De Cataldo, Giacinto ; Cuveland, Jan de ; De Falco, Alessandro ; De Gaspari, M. ; de Groot, J. ; De Gruttola, Daniele ; De Marco, Nora ; De Pasquale, Salvatore ; De Remigis, R. ; de Rooij, R. ; de Vaux, G. ; Delagrange, H. ; Delgado, Y. ; Dellacasa, G. ; Deloff, Andrzej ; Demanov, V. ; Dénes, Ervin Sandor ; Deppman, A. ; D’Erasmo, Ginevra ; Derkach, D. ; Devaux, A. ; Di Bari, Domenico ; Di Giglio, C. ; Di Liberto, S. ; Di Mauro, Antonio ; Di Nezza, Pasquale ; Dialinas, M. ; Díaz, L. ; Díaz, R. ; Dietel, Thomas ; Divià, Roberto ; Djuvsland, Øystein ; Dobretsov, V. ; Dobrin, Alexandru Florin ; Dobrowolski, Tadeusz Antoni ; Dönigus, Benjamin ; Domínguez, I. ; Don, D.M.M. ; Dordic, Olja ; Dubey, Anand Kumar ; Dubuisson, J. ; Ducroux, Laurent ; Dupieux, Pascal ; Dutta Majumdar, A.K. ; Dutta Majumdar, M.R. ; Elia, Domenico ; Emschermann, D. ; Enokizono, A. ; Espagnon, Bruno ; Estienne, Magali Danielle ; Esumi, ShinIchi ; Evans, David ; Evrard, S. ; Eyyubova, Gyulnara ; Fabjan, C.W. ; Fabris, Daniela ; Faivre, Julien ; Falchieri, D. ; Fantoni, Alessandra ; Fasel, Markus ; Fateev, O. ; Fearick, R. ; Fedunov, A. ; Fehlker, D. ; Fekete, V. ; Felea, Daniel ; Fenton-Olsen, B. ; Feofilov, Grigori A. ; Fernández Téllez, Arturo ; Gonzalez Ferreiro, Elena ; Ferretti, Alessandro ; Ferretti, R. ; Figueredo, Marcel Araujo Silva ; Filchagin, Sergey ; Fini, R. ; Fionda, Fiorella Maria Celeste ; Fiore, Enrichetta Maria ; Floris, Michele ; Fodor, Zoltán ; Foertsch, Siegfried Valentin ; Foka, Panagiota ; Fokin, Sergey ; Formenti, F. ; Fragiacomo, Enrico ; Fragkiadakis, M. ; Frankenfeld, Ulrich ; Frolov, A. ; Fuchs, Ulrich ; Furano, F. ; Furget, Christophe ; Fusco Girard, Mario ; Gaardhøje, Jens Jørgen ; Gadrat, S. ; Gagliardi, Martino ; Gago, A. ; Gallio, Mauro ; Ganoti, Paraskevi ; Ganti, Murthy S. ; Garabatos, Chilo ; García Trapaga, C. ; Gebelein, J. ; Gemme, R. ; Germain, Marie ; Gheata, Andrei George ; Gheata, Mihaela ; Ghidini, B. ; Ghosh, Premomoy ; Giraudo, G. ; Giubellino, Paolo ; Gładysz-Dziaduś, Ewa ; Glasow, R. ; Glässel, Peter ; Glenn, A. ; Gómez Jiménez, R. ; González Santos, H. ; González Trueba, Laura Helena ; González Zamora, Pedro ; Gorbunov, Sergey ; Gorbunov, Y. ; Gotovac, Sven ; Gottschlag, H. ; Grabski, Varlen ; Grajcarek, R. ; Grelli, Alessandro ; Grigoras, Alina Gabriela ; Grigoraș, Costin ; Grigoriev, Vladislav A. ; Grigoryan, Ara ; Grigoryan, Smbat ; Grinyov, Boris V. ; Grion, Nevio ; Gros, P. ; Große-Oetringhaus, Jan Fiete ; Grossiord, Jean-Yves ; Grosso, Raffaele ; Guber, Fedor ; Guernane, Rachid ; Guerra, C. ; Guerzoni, Barbara ; Gulbrandsen, Kristjan Herlache ; Gulkanyan, Hrant ; Gunji, Taku ; Gupta, Anik ; Gupta, Ramni ; Gustafsson, H.-A. ; Gutbrod, H. ; Haaland, Øystein Senneset ; Hadjidakis, Cynthia Marie ; Haiduc, Maria ; Hamagaki, Hideki ; Hamar, Gergö ; Hamblen, J. ; Han, B.H. ; Harris, John W. ; Hartig, M. ; Harutyunyan, A. ; Hasch, D. ; Hasegan, D. ; Hatzifotiadou, Despina ; Hayrapetyan, A. ; Heide, Markus ; Heinz, Mark Thomas ; Helstrup, Håvard ; Herghelegiu, Andrei Ionut ; Hernández, C. ; Herrera Corral, Gerardo Antonio ; Herrmann, Norbert ; Hetland, Kristin Fanebust ; Hicks, B. ; Hiei, A. ; Hille, P.T. ; Hippolyte, Boris ; Horaguchi, T. ; Hori, Y. ; Hristov, Peter ; Hřivnáčová, I. ; Hu, S. ; Huang, M. ; Huber, S. ; Humanic, Thomas J. ; Hutter, Dirk ; Hwang, D.S. ; Ichou, R. ; Ilkaev, Radiy ; Ilkiv, Iryna ; Inaba, Motoi ; Innocenti, P.G. ; Ippolitov, Mikhail ; Irfan, M. ; Ivan, C. ; Ivanov, A. ; Ivanov, Marian ; Ivanov, V. ; Iwasaki, T. ; Jacholkowski, Adam Wlodzimierz ; Jacobs, P. ; Jančurová, L. ; Jangal, S. ; Janik, R. ; Jena, Chitrasen ; Jena, Satyajit ; Jirden, L. ; Jones, Goronwy Tudor ; Jones, Peter Graham ; Jovanović, P. ; Jung, H. ; Jung, W. ; Jusko, Anton ; Kaidalov, A.B. ; Kalcher, S. ; Kaliňák, Peter ; Kalisky, M. ; Kalliokoski, T. ; Kalweit, Alexander Philipp ; Kamal, A. ; Kamermans, R. ; Kanaki, K. ; Kang, E. ; Kang, Ju Hwan ; Kapitan, J. ; Kaplin, Vladimir ; Kapusta, S. ; Karavichev, Oleg V. ; Karavicheva, Tatiana L. ; Karpechev, Evgeny ; Kazantsev, Andrey ; Kebschull, Udo ; Keidel, Ralf ; Khan, M.M. ; Khan, Shuaib Ahmad ; Khanzadeev, Alexei ; Kharlov, Yury ; Kikola, D. ; Kileng, Bjarte ; Kim, D.J. ; Kim, D.S. ; Kim, D.W. ; Kim, H.N. ; Kim, J. ; Kim, J.H. ; Kim, J.S. ; Kim, M. ; Kim, M. ; Kim, S.H. ; Kim, S. ; Kim, Y. ; Kirsch, Stefan ; Kisel, Ivan ; Kiselev, Sergej N. ; Kisiel, Adam Ryszard ; Klay, Jennifer Lynn ; Klein, Jochen ; Klein-Bösing, Christian ; Kliemant, Michael ; Klovning, A. ; Kluge, Alexander ; Knichel, Michael Linus ; Kniege, Stefan ; Koch, K. ; Kolevatov, R. ; Kolojvari, Anatoly ; Kondratiev, Valery P. ; Kondratyeva, Natalia ; Konevskih, A. ; Kornaś, Ewelina ; Kour, R. ; Kowalski, Marek ; Kox, Serge ; Kozlov, K. ; Kral, Jiří ; Králik, Ivan ; Kramer, F. ; Kraus, Ingrid ; Kravčáková, Adela ; Krawutschke, T. ; Krivda, Marian ; Krumbhorn, D. ; Krus, M. ; Kryshen, Evgeny ; Krzewicki, Mikolaj ; Kucheriaev, Yury ; Kuhn, Christian Claude ; Kuijer, Paulus Gerardus ; Kumar, Lokesh ; Kumar, N. ; Kupczak, R. ; Kurashvili, Podist ; Kurepin, Alexander ; Kurepin, A.N. ; Kuryakin, Alexey ; Kushpil, Svetlana ; Kushpil, V. ; Kutouski, M. ; Kvaerno, H. ; Kweon, Min Jung ; Kwon, Youngil ; La Rocca, Paola ; Lackner, F. ; Ladron de Guevara, Pedro ; Lafage, V. ; Lal, C. ; Lara Martinez, Camilo Ernesto ; Larsen, D.T. ; Laurenti, G. ; Lazzeroni, C. ; Le Bornec, Y. ; Le Bris, N. ; Lee, H. ; Lee, K.S. ; Lee, S.C. ; Lefèvre, F. ; Lenhardt, M. ; Leistam, L. ; Lehnert, Jörg ; Lenti, Vito ; León, H. ; León Monzón, Ildefonso ; León Vargas, H. ; Lévai, Péter ; Li, X. ; Li, Y. ; Lietava, Roman ; Lindal, Svein ; Lindenstruth, Volker ; Lippmann, Christian ; Lisa, Michael A. ; Liu, L. ; Loginov, Vitaly ; Lohn, S. ; Lopez, Xavier Bernard ; López Noriega, M. ; López-Ramírez, R. ; López Torres, Ernesto ; Løvhøiden, G. ; Lozea Feijo Soares, A. ; Lu, S. ; Lüttig, Philipp ; Lunardon, Marcello ; Luparello, Grazia ; Luquin, L. ; Lutz, Jean-Robert ; Ma, K. ; Ma, R. ; Madagodahettige-Don, D.M. ; Maevskaya, Alla ; Mager, Magnus ; Mahapatra, D.P. ; Maire, Antonin ; Makhlyueva, I. ; Mal’Kevich, Dmitry ; Malaev, Mikhail ; Malagalage, K.J. ; Maldonado Cervantes, Ivonne Alicia ; Malek, M. ; Malkiewicz, T. ; Malzacher, Peter ; Mamonov, Alexander ; Manceau, Loic Henri Antoine ; Mangotra, L. ; Manko, Vladislav ; Manso, Franck ; Manzari, Vito ; Mao, Yaxian ; Mareš, Jiří ; Margagliotti, Giacomo Vito ; Margotti, Anselmo ; Marín, Ana ; Martashvili, Irakli ; Martinengo, Paolo ; Martínez Hernández, M.I. ; Martínez Davalos, A. ; Martínez Garcia, Ginés ; Maruyama, Y. ; Marzari Chiesa, A. ; Masciocchi, Silvia ; Masera, Massimo ; Masetti, M. ; Masoni, Alberto ; Massacrier, Laure Marie ; Mastromarco, Mario ; Mastroserio, Annalisa ; Matthews, Z.L. ; Matyja, Adam Tomasz ; Mayani, D. ; Mazza, G. ; Mazzoni, Alessandra Maria ; Meddi, Franco ; Menchaca-Rocha, Arturo Alejandro ; Mendez Lorenzo, P. ; Meoni, M. ; Mercado Pérez, Jorge ; Mereu, P. ; Miake, Yasuo ; Michalon, A. ; Miftakhov, N. ; Milano, Leonardo ; Milošević, Jovan ; Minafra, F. ; Mischke, André ; Miśkowiec, Dariusz Czesław ; Mitu, C. ; Mizoguchi, K. ; Mlynarz, J. ; Mohanty, Bedangadas ; Molnar, Levente ; Mondal, Mriganka Mouli ; Montaño Zetina, Luis Manuel ; Monteno, M. ; Montes Prado, Esther ; Morando, Maurizio ; Moretto, Sandra ; Morsch, Andreas ; Moukhanova, T. ; Muccifora, Valeria ; Mudnic, Eugen ; Muhuri, Sanjib ; Müller, H. ; Munhoz, Marcelo Gameiro ; Munoz, J. ; Musa, Luciano ; Musso, A. ; Nandi, Basanta Kumar ; Nania, Rosario ; Nappi, Eugenio ; Navach, F. ; Navin, S. ; Nayak, Tapan Kumar ; Nazarenko, Sergey ; Nazarov, G. ; Nedosekin, Alexander ; Nendaz, F. ; Newby, J. ; Nianine, A. ; Nicassio, Maria ; Nielsen, Borge Svane ; Nikolaev, Sergey ; Nikolic, V. ; Nikulin, Sergey ; Nikulin, Vladimir ; Nilsen, B.S. ; Nilsson, M.S. ; Noferini, Francesco ; Nomokonov, Petr V. ; Nooren, Gerardus ; Novitzky, Norbert ; Nyatha, A. ; Nygaard, C. ; Nyiri, A. ; Nystrand, Joakim Ingemar ; Ochirov, A. ; Odyniec, G. ; Oeschler, Helmut ; Oinonen, M. ; Okada, K. ; Okada, Y. ; Oldenburg, Markus D. ; Oleniacz, Janusz ; Oppedisano, Chiara ; Orsini, F. ; Ortiz Velasquez, Antonio ; Ortona, G. ; Oskarsson, Anders Nils Erik ; Osmic, F. ; Österman, L. ; Ostrowski, P. ; Otterlund, I. ; Otwinowski, Jacek Tomasz ; Øvrebekk, G. ; Oyama, Ken ; Ozawa, K. ; Pachmayer, Yvonne C. ; Pachr, Miloš ; Padilla, F. ; Pagano, Paola ; Paić, Guy ; Painke, F. ; Pajares Vales, Carlos ; Pal, S. ; Pal, Susanta Kumar ; Palaha, A. ; Palmeri, A. ; Panse, R. ; Papikyan, Vardanush ; Pappalardo, Giuseppe Salvatore ; Park, WooJin ; Pastirčák, B. ; Pastore, C. ; Paticchio, Vincenzo ; Pavlinov, A. ; Pawlak, Tomasz Jan ; Peitzmann, Thomas ; Pepato, A. ; Pereira, H. ; Peressounko, D. ; Pérez, C. ; Perini, D. ; Perrino, D. ; Peryt, Wiktor Stanislaw ; Peschek, J. ; Pesci, A. ; Peskov, Vladimir ; Pestov, Yury N. ; Peters, A.J. ; Petráček, Vojtech ; Petridis, Athanasios ; Petris, M. ; Petrov, P. ; Petrovici, Mihai A. ; Petta, Catia ; Peyré, J. ; Piano, Stefano ; Piccotti, A. ; Pikna, Miroslav ; Pillot, Philippe ; Pinazza, Ombretta ; Pinsky, Lawrence ; Pitz, N. ; Piuz, F. ; Platt, R. ; Płoskoń, Mateusz ; Pluta, Jan Marian ; Pocheptsov, T. ; Pochybova, Sona ; Podesta Lerma, P.L.M. ; Poggio, F. ; Poghosyan, Martin G. ; Polák, K. ; Polichtchouk, Boris ; Polozov, P. ; Polyakov, V. ; Pommeresch, B. ; Pop, Amalia ; Posa, F. ; Pospíšil, V. ; Potukuchi, B. ; Pouthas, J. ; Prasad, Sidharth Kumar ; Preghenella, Roberto ; Prino, Francesco ; Pruneau, Claude A. ; Pshenichnov, Igor A. ; Puddu, Giovanna ; Pujahari, Prabhat Ranjan ; Pulvirenti, A. ; Punin, A. ; Punin, Valery ; Putiš, M. ; Putschke, Jörn H. ; Quercigh, E. ; Rachevski, Alexandre ; Rademakers, A. ; Radomski, S. ; Räihä, T.S. ; Rak, Jan ; Rakotozafindrabe, Andry Malala ; Ramello, Luciano ; Ramírez Reyes, A. ; Rammler, M. ; Raniwala, Rashmi ; Raniwala, Sudhir ; Räsänen, Sami Sakari ; Rashevskaya, I. ; Rath, S. ; Read, Kenneth Francis ; Real, Jean-Sébastien ; Redlich, Krzysztof ; Renfordt, Rainer Arno Ernst ; Reolon, Anna Rita ; Reshetin, Andrey ; Rettig, Felix Vincenz ; Revol, Jean-Pierre ; Reygers, Klaus ; Ricaud, H. ; Riccati, L. ; Ricci, Renato Angelo ; Richter, Matthias Rudolph ; Riedler, Petra ; Riegler, Werner ; Riggi, Francesco ; Rivetti, Angelo ; Rodrı́guez Cahuantzi, Mario ; Røed, Ketil ; Röhrich, Dieter ; Román López, S. ; Romita, Rosa ; Ronchetti, Federico ; Rosinský, P. ; Rosnet, Philippe ; Rossegger, S. ; Rossi, Andrea ; Roukoutakis, Filimon ; Rousseau, S. ; Roy, Christelle Sophie ; Roy, Pradip Kumar ; Rubio-Montero, A.J. ; Rui, Rinaldo ; Rusanov, I. ; Russo, G. ; Ryabinkin, Evgeny ; Rybicki, Andrzej ; Sadovskiy, Sergey ; Šafařík, Karel ; Sahoo, Raghunath ; Saini, Jogender ; Saiz, P. ; Sakata, D. ; Salgado, Carlos A. ; Salgueiro Domingues da Silva, R. ; Salur, Sevil ; Samanta, T. ; Sambyal, Sanjeev Singh ; Samsonov, Vladimir ; Šándor, Ladislav ; Sandoval, Andres ; Sano, Masato ; Sano, S. ; Santo, R. ; Santoro, R. ; Sarkamo, J. ; Saturnini, P. ; Scapparone, Eugenio ; Scarlassara, Fernando ; Scharenberg, Rolf Paul ; Schiaua, Claudiu Cornel ; Schicker, Rainer ; Schindler, H. ; Schmidt, Christian Joachim ; Schmidt, Hans Rudolf ; Schossmaier, K. ; Schreiner, S. ; Schuchmann, Simone ; Schukraft, Jürgen ; Schutz, Yves Roland ; Schwarz, Kilian ; Schweda, Kai ; Scioli, Gilda ; Scomparin, Enrico ; Scott, P.A. ; Segato, G. ; Semenov, D. ; Senyukov, Serhiy ; Seo, Jeewon ; Serci, S. ; Serkin, L. ; Serradilla, Eulogio ; Sevcenco, Adrian ; Sgura, I. ; Shabratova, G. ; Shahoyan, Ruben ; Sharkov, G. ; Sharma, Natasha ; Sharma, S. ; Shigaki, Kenta ; Shimomura, Maya ; Shtejer, Katherin ; Sibiriak, Yury ; Siciliano, M. ; Sicking, E. ; Siddi, E. ; Siemiarczuk, Teodor ; Silenzi, A. ; Silvermyr, David Olle Rickard ; Simili, E. ; Simonetti, Giuseppe ; Singaraju, Rama Narayana ; Singh, R. ; Singhal, Vikas ; Sinha, Bikash ; Sinha, Tinku ; Sitar, Branislav ; Sitta, Mario ; Skaali, Toralf Bernhard ; Skjerdal, K. ; Smakal, R. ; Smirnov, N. ; Snellings, Raimond ; Snow, H. ; Søgaard, C. ; Soloviev, A. ; Soltveit, H.K. ; Soltz, Ron ; Sommer, W. ; Son, C.W. ; Son, H. ; Song, M. ; Soos, C. ; Soramel, Francesca ; Soyk, D. ; Spyropoulou-Stassinaki, Martha ; Srivastava, Brijesh Kumar ; Stachel, Johanna ; Staley, F. ; Stan, E. ; Stefanek, Grzegorz ; Stefanini, G. ; Steinbeck, T. ; Stenlund, Evert Anders ; Steyn, Gideon Francois ; Stocco, Diego ; Stock, Reinhard ; Stolpovsky, P. ; Strmen, Peter ; Suaide, Alexandre Alarcon do Passo ; Subieta Vasquez, Martin Alfonso ; Sugitate, Toru ; Suire, Christophe Pierre ; Šumbera, Michal ; Šuša, Tatjana ; Swoboda, D. ; Symons, J. ; Toledo, Alejandro Szanto de ; Szarka, Imrich ; Szostak, A. ; Szuba, M. ; Tadel, M. ; Tagridis, C. ; Takahara, A. ; Takahashi, Jun ; Tanabe, R. ; Tapia Takaki, Jesus Daniel ; Taureg, H. ; Tauro, Arturo ; Tavlet, M. ; Tejeda Muñoz, Guillermo ; Telesca, Adriana ; Terrevoli, Cristina ; Thäder, Jochen ; Tieulent, Raphael Noel ; Tlusty, David ; Toia, Alberica ; Tolyhy, T. ; Torcato de Matos, C. ; Torii, H. ; Torralba, G. ; Toscano, L. ; Tosello, F. ; Tournaire, A. ; Traczyk, T. ; Tribedy, Prithwish ; Tröger, G. ; Truesdale, David Christopher ; Trzaska, Wladyslaw Henryk ; Tsiledakis, G. ; Tsilis, E. ; Tsuji, Tomoya ; Tumkin, Alexandr ; Turrisi, Rosario ; Turvey, A. ; Tveter, Trine Spedstad ; Tydesjö, H. ; Tywoniuk, K. ; Ulery, Jason Glyndwr ; Ullaland, Kjetil ; Uras, Antonio ; Urbán, J. ; Urciuoli, G.M. ; Usai, Gianluca ; Vacchi, A. ; Vala, Martin ; Valencia Palomo, Lizardo ; Vallero, Sara ; Kolk, Naomi van der ; Vyvre, Pierre vande ; Leeuwen, Marco van ; Vannucci, L. ; Vargas Treviño, Maria Aurora Diozcora ; Varma, Raghava ; Vasiliev, Andrey ; Vassiliev, Iouri ; Vasileiou, Maria ; Vechernin, Vladimir ; Venaruzzo, Massimo ; Vercellin, Ermanno ; Vergara, S. ; Vernet, Renaud ; Verweij, Marta ; Vetlitskiy, I. ; Vicković, Linda ; Viesti, Giuseppe ; Vikhlyantsev, O. ; Vilakazi, Zabulon ; Villalobos Baillie, Orlando ; Vinogradov, Alexander A. ; Vinogradov, Leonid ; Vinogradov, Yury I. ; Virgili, Tiziano ; Viyogi, Yogendra P. ; Vodopianov, A. ; Voloshin, Kirill ; Voloshin, Sergei ; Volpe, Giacomo ; Haller, Barthélémy von ; Vranić, Danilo ; Vrláková, Janka ; Vulpescu, Bogdan ; Wagner, Boris ; Wagner, V. ; Wallet, L. ; Wan, R. ; Wang, D. ; Wang, Y. ; Wang, Y. ; Watanabe, K. ; Wen, Q. ; Wessels, J. ; Westerhoff, Uwe ; Wiechula, Jens ; Wikne, Jon ; Wilk, A. ; Wilk, Grzegorz Andrzej ; Williams, M. Crispin S. ; Willis, N. ; Windelband, Bernd ; Xu, C. ; Yang, C. ; Yang, H. ; Yasnopolskiy, S. ; Yermia, F. ; Yi, J. ; Yin, Zhongbao ; Yokoyama, Hiroki ; Yoo, In-Kwon ; Yuan, X. ; Yurevich, V. ; Yushmanov, Igor E. ; Zabrodin, E. ; Zagreev, B. ; Zalite, A. ; Zampolli, Chiara ; Zanevsky, Yuri V. ; Zaporozhets, Sergey ; Zarochentsev, Andrey ; Závada, Petr ; Zbroszczyk, Hanna Paulina ; Zelnicek, P. ; Zenin, A. ; Zepeda, A. ; Zgura, I. ; Zhalov, Mikhail ; Zhang, X. ; Zhou, D. ; Zhou, S. ; Zhu, J. ; Zichichi, Antonino ; Zinchenko, A. ; Zinovjev, Gennady M. ; Zoccarato, Y. ; Zycháček, V. ; Zynovyev, M.
The inclusive charged particle transverse momentum distribution is measured in proton–proton collisions at s=900 GeV at the LHC using the ALICE detector. The measurement is performed in the central pseudorapidity region (|η|<0.8) over the transverse momentum range 0.15<pT<10 GeV/c. The correlation between transverse momentum and particle multiplicity is also studied. Results are presented for inelastic (INEL) and non-single-diffractive (NSD) events. The average transverse momentum for |η|<0.8 is 〈pT〉INEL=0.483±0.001 (stat.)±0.007 (syst.) GeV/c and 〈pT〉NSD=0.489±0.001 (stat.)±0.007 (syst.) GeV/c, respectively. The data exhibit a slightly larger 〈pT〉 than measurements in wider pseudorapidity intervals. The results are compared to simulations with the Monte Carlo event generators PYTHIA and PHOJET.
Babski, Julia ; Haas, Karina Anna ; Näther, Daniela ; Pfeiffer, Friedhelm ; Förstner, Konrad Ulrich ; Hammelmann, Matthias ; Hilker, Rolf ; Becker, Anke ; Sharma, Cynthia Mira ; Marchfelder, Anita ; Soppa, Jörg
Background: Differential RNA-Seq (dRNA-Seq) is a recently developed method of performing primary transcriptome analyses that allows for the genome-wide mapping of transcriptional start sites (TSSs) and the identification of novel transcripts. Although the transcriptomes of diverse bacterial species have been characterized by dRNA-Seq, the transcriptome analysis of archaeal species is still rather limited. Therefore, we used dRNA-Seq to characterize the primary transcriptome of the model archaeon Haloferax volcanii.
Results: Three independent cultures of Hfx. volcanii grown under optimal conditions to the mid-exponential growth phase were used to determine the primary transcriptome and map the 5′-ends of the transcripts. In total, 4749 potential TSSs were detected. A position weight matrix (PWM) was derived for the promoter predictions, and the results showed that 64 % of the TSSs were preceded by stringent or relaxed basal promoters. Of the identified TSSs, 1851 belonged to protein-coding genes. Thus, fewer than half (46 %) of the 4040 protein-coding genes were expressed under optimal growth conditions. Seventy-two percent of all protein-coding transcripts were leaderless, which emphasized that this pathway is the major pathway for translation initiation in haloarchaea. A total of 2898 of the TSSs belonged to potential non-coding RNAs, which accounted for an unexpectedly high fraction (61 %) of all transcripts. Most of the non-coding TSSs had not been previously described (2792) and represented novel sequences (59 % of all TSSs). A large fraction of the potential novel non-coding transcripts were cis-antisense RNAs (1244 aTSSs). A strong negative correlation between the levels of antisense transcripts and cognate sense mRNAs was found, which suggested that the negative regulation of gene expression via antisense RNAs may play an important role in haloarchaea. The other types of novel non-coding transcripts corresponded to internal transcripts overlapping with mRNAs (1153 iTSSs) and intergenic small RNA (sRNA) candidates (395 TSSs).
Conclusion: This study provides a comprehensive map of the primary transcriptome of Hfx. volcanii grown under optimal conditions. Fewer than half of all protein-coding genes have been transcribed under these conditions. Unexpectedly, more than half of the detected TSSs belonged to several classes of non-coding RNAs. Thus, RNA-based regulation appears to play a more important role in haloarchaea than previously anticipated.
Adamczewski-Musch, Jörn ; Akishin, Pavel G. ; Becker, Karl-Heinz ; Bendarouach, Jordan ; Deveaux, Christina Anna ; Dürr, Michael ; Eschke, Jürgen ; Förtsch, Jörg ; Heep, Julian ; Höhne, Claudia ; Ivanishchev, Dmitry ; Kampert, Karl-Heinz ; Kočenda, Leonid M. ; Kravtsov, Peter ; Kres, Ievgenii ; Lebedev, Semen ; Lebedeva, Elena ; Linev, Sergey ; Mahmoud, Tariq ; Malaev, Mikhail ; Michel, Jan ; Miftakhov, Nail ; Niebur, Wolfgang ; Otto, Jan-Hendrik ; Ovcharenko, Egor ; Patel, Vivek ; Pauly, Christian ; Pfeifer, Dennis ; Riabov, Yuri G. ; Roshchin, Evgeny ; Samsonov, Vladimir ; Tarasenkova, Olga ; Traxler, Michael ; Tyts, D. ; Vznuzdaev, Marat ; Weber, Adrian Amatus ; Zumbruch, Peter W.
The Compressed Baryonic Matter (CBM) experiment is a dedicated heavy ion collision experiment at the FAIR facility. It will be one of the first HEP experiments which works in a triggerless mode: data received in the DAQ from the detectors will not be associated with events by a hardware trigger anymore. All raw data within a giventime period will be collected continuously in containers, so-called time-slices. The task of the reconstruction algorithms is to create events out of this raw data stream. In this contribution, the optimization of the reconstruction software in the RICH detector to the free-streaming data flow is presented. The implementation of ring reconstruction algorithms which use time measurements of the hits as an additional parameter is discussed.