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The interactions between human haptoglobin, Hp II (genetic types 2 - 1 and 2-2), and bovine hemoglobin, Hb, were investigated taking inhibition of complex formation and complex dissociation in various solvent media as criteria.
As shown by relative peroxidase activity and gel chromatography, complex dissociation occurs at high concentrations of guanidine HCl, urea, sodium chloride, dioxane, and formaldehyde, while in case of sodium dodecylsulfate a low molar ratio (SDS/Hb -Hp<5) is sufficient to split the complex. In general the formation of the complex stabilizes the structure of its constituents.
Excluding solvent conditions which lead to denaturation (as measured by optical rotation), ionpairs and H-bonds seem to prevail in the stabilization of the complex, while hydrophobic interactions should be of minor importance. Chemical modification of histidine and tyrosine with diazonium-1-H-tetrazole and N-acetylimidazole, respectively, prove histidyl-groups in Hb and tyrosylgroups in Hp to participate in the Hb-Hp contact, thus confirming earlier results.
The NAD analogue [3-(3-acetylpyridinio)-propyl] adenosine pyrophosphate forms enzymically inactive complexes with glyceraldehyde-3-phosphate dehydrogenase from yeast and rabbit skeletal muscle. In the latter enzyme four mol of the analogue are bound with equal affinity inhibiting the enzyme in a competitive way: KI = 0.3 mM as compared to the dissociation constant KD=O.6 mм.
The brominated derivative [3- (3-bromoacetylpyridinio) -propyl] adenosine pyrophosphate is covalently bound to both enzymes causing irreversible loss of enzymic activity. Complete inactivation of the enzyme from muscle requires two moles of the analogue per mol of tetramer. The remaining two sites are still able to bind two mol of NAD+ without regain of enzymic activity. In the case of the yeast enzyme four mol of the analogue are bound. Inactivation of the rabbit muscle enzyme is accompanied by the disappearance of two out of four highly reactive sulfhydryl groups; in the yeast enzyme the four active site cysteine residues are still able to react with DTNB1 the reactivity being diminished significantly.
Hybrid formation between the native enzymes from yeast and skeletal muscle is not affected by the modification of the enzyme. Similarly the sedimentation properties of the covalently modified enzyme are indistinguishable from those of the native molecule. This indicates that both the native and the irreversibly inhibited enzyme are identical regarding their quaternary structure.
Zur Klärung der Frage nach der Beteiligung von Protein-Actinomycin (AMC) -Wechselwirkungen am antibiotischen Wirkungsmechanismus von AMC wurden mit Hilfe von Absorptions-, Fluoreszenz- und Rotationsdispersions-Spektroskopie, sowie Gelfiltration, Gleichgewichts-Dialyse, Ultrazentrifugation und enzymatischen Tests physikalisch-chemische Wechselwirkungen von AMC und Actinocinanalogen mit Ribonuclease, Serumalbumin und einigen SH-Enzymen (ADH, LDH, GAPDH) untersucht. Photochemische Reaktionen wurden ausgeschlossen.
Eine Bildung starker Komplexe wird nur bei pH < 2 beobachtet. Unter quasi-physiologischen Bedingungen des Mediums ergibt sich aus einer Differenzbande im Bereich der Phenoxazin-Absorption schwache Komplexbildung, die bei hohen Proteinkonzentrationen auch durch die gemeinsame Sedimentation von AMC und Protein bestätigt wird. Die Peptid-Lacton-Ringe des AMC und die aromatischen Aminosäuren der Proteine scheinen an der Wechselwirkung nicht beteiligt zu sein (Reaktion mit AMC-Dimeren, Null-Differenzspektrum bei λ ~ 280 mμ). Die Ähnlichkeit im Verhalten von Cystein, Glutathion und SH-Enzymen und der kompetitive Effekt von Cystein bei der AMC-Enzym-Wechselwirkung weisen auf eine Beteiligung von Cystein am Komplex hin.
Eine durch AMC bewirkte Desaktivierung oder Stimulierung von Ribonuclease wird nicht beobachtet. Dagegen tritt im Fall von SH-Enzymen im pH-Optimum eine dem molaren Verhältnis AMC/Enzym proportionale Desaktivierung auf, die durch DNA bzw. RNA nur z. T. aufgehoben wird. Konformationsänderungen sind dabei nicht nachweisbar; die optische Drehung erweist sich als additiv. „Extrinsic“ Cotton-Effekte treten nicht auf.
Die SH-Spezifität des Ribonuclease-Inhibitors legt in Analogie zu den untersuchten SH-Enzymen die Annahme nahe, daß eine AMC-Protein-Wechselwirkung (Blockierung des RNase-Inhibitors) am biologischen Wirkungs-Mechanismus des AMC beteiligt sein könnte.
Thermal denaturation of RNA free coat proteins of tobacco mosaic virus (TMV) was studied for wildtype TMV (vulgare) and the temperature-sensitive mutant, Ni 118. The ability to form soluble aggregates as well as the optical properties (ORD, UV-difference spectra), and the sedimentation behavior were used as criteria for the native state.
At pH 7.5, I= 0.02 denaturation is reversible for both proteins. The ORD data indicate that the denatured proteins contain residual secondary structure. The “melting temperatures”, as defined by ORD measurements (cp = 0.02 mM), are 39.5 ± 1°C for vulgare and 27 ± 1°C for Ni 118 at pH 7.5, I= 0.02. By means of the aggregation test (cp = 0.05 mM) somewhat lower melting temperatures were found under the same solvent conditions. The difference between the primary structures of vulgare and Ni 118 proteins being a proline → leucine (pos. 20) replacement, the results suggest the cyclic structure of proline (20) to have a specific stabilizing function in the three dimensional protein structure. This conclusion is supported by preliminary experiments on a temperature-sensitive mutant with a threonine residue in pos. 20.
In order to determine the influence of OH and O2H-radicals on proteins, bovine serum albumin (BSA) in aqueous solution was treated with Fenton’s reagent [Fe(II)SO4+EDTA+H2O2] and with ultraviolet light (λ > 2800 Å) in the presence of H2O2. The action of free radicals produced in this way did not change the properties of the native protein with respect to the sedimentation in the ultracentrifuge or optical rotatory dispersion and electrophoresis under normal conditions. Ampèrometric titration indicated partial oxidation of SH-groups and of 3—5 SS-groups which are not reducible by NaBH4.
Heat aggregation investigated by means of light-scattering was suppressed at pH 7.5 and strongly accelerated at pH 4.6 (range of coagulation), the latter being a result of increased entropy of activation of coagulation velocity.
The difference spectrum against native BSA had positive values of Δε and two maxima at 2480 and 2950 Å.
Ultracentrifugation at room temperature in phosphate buffer (pH 7.3, μ=0.18) furnishes a molecular weight of 63 300. In a solution of 8 M urea and borate buffer (pH 9, μ=0.05) fragments with molecular weights between 25 000 and 37 000 were observed while in phosphate buffer (pH 7.3, without urea) at temperatures higher than 46 °C an anomalous behaviour of the concentration gradient indicated an effect which possibly depends on a dissociation equilibrium.
As a consequence oxygen radicals seem to attack not only SH- and SS-groups but at least one covalent bond of the peptide chain. Some experiments of heat aggregation with BSA treated with γ-rays (60Co) gave the same results as BSA treated with Fenton’s reagent or UV-light+H2O2.
In order to determine the intermolecular forces in the process of the heat aggregation of globular proteins in solution, selected proteins with different amounts of disulfide- and thiolgroups were investigated by specific inhibition experiments and by degradation analysis, using lightscattering and ultracentrifugation methods.
In accordance with the mechanism of the heat aggregation, which in general (SH —SS-proteins) may be characterized as a coupled coagulation- and exchange-reaction, auxiliary valences and covalent bonds take part in the aggregation process.
Besides the pʜ-range of lanthionine-formation, the coagulation-mechanism by weak intermolecular forces exceeds the covalent type of aggregation.
If only one of the sulphur functional groups is present in the protein molecules the aggregation is merely the result of the coagulation-mechanism, i. e. the degradation by urea, guanidine·HCl, variation of pʜ etc. leads back to the monomer.
In the case of SH —SS-proteins the degradation rate depends on the temperature and duration of aggregation: In the range of predenaturation and under isoelectric conditions the native monomer is restored while increasing net charge leads more and more to covalently bound aggregates which are due to disulfide- and lanthionine-groups. High alkalinity promotes the formation of lanthionine.
Regarding the weak intermolecular bonds the application of specific criteria in degradation and inhibition experiments proves that Η-bonds and hydrophobic interactions participate in the aggregation process while ion pair bonds may be excluded. The hydrophobic interactions do not become apparent, until partial denaturation of the aggregating protein takes place.
The proportion of the total aggregation at extreme pʜ-values which is produced by the coagulation mechanism may be explained in a tentative way by assuming specific electrostatic short range interactions between the partially dehydrated molecules, leading to fibrillar associates.