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A taxonomic review of the species belonging to Bembidion Latreille, 1802 of Australia includes a key and descriptions of the species. Noinenclatorial acts proposed in this paper include: 1, taxa of new Status - Bembidion subgenus Sloanephila Netolitzky, 1931, valid subgenus, not consubgeneric with subgenus Philochtus Stephens, 1828; B. (Notaphocampa) riverinae Sloane, 1894 valid species, not subspecies of B. opulentum Nietner, 1858; 2, new synonyms B. (Notaphominis Netolitzky, 1931) = B. (Notaphocampa Netolitzky, 1914): 3, New subgenera - Australoemphanes, and Gondwanabembidion, 4, New species - B. (Ananotaphus) daccordii (South Australia, Mound Springs); 5, new subspecies - B. (Zeactedium) orbiferum giachinoi (New ZeaIand, North Island); 6, species transferred to Australoemphanes - B . (Ananotaphus) blackburni Csiki, 1928; 7, Species transferred to Gondwanabembidion - B . (Ananotaphus) proprium Blackburn, 1888. Conclusions of an informal phylogeographic study are: 1, the Auslralian continent was probably populated by the Bembidiina with relatively recent (Late Tertiary-Quaternary) invasions from the north by tropical lineages, while other lineages showing systematic relationships with African and South American taxa probably have an older, Gondwanian origin; and 2, some lineagas of predominantly Nearctic and Palaearctic taxa were also Gondwanian in origin.
In this study we attempt to develop a synthesis of previously published work concerning the feeding habits of fourteen European freshwater fish: Anguilla anguilla L., Salmo trutta L., Rutilus rutilus L., Leuciscus leuciscus L ., Leuciscus cephalus L., Phoxinus phoxinus L., Gobio gobio L., Abramis brama L., Cyprinus carpio L., Tinca tinca L., Barbatula barbutula L., Gasterosteus aculeatus L., Perca fluviatilis L. and Cottus gobio L. Data presented in this paper were obtained frorn 98 studies in 16 European countries. Great Britain with 40 studies was the most documented country. In order to synthetize the maximurn information for each species, all methods used for analysing feeding habits and found in the different studies have been taken into account. Results are presented on tables with a commentary for each species analysed. The fourteen species were then classified into major trophic guilds.
There has been no attempt to produce a comprehensive review of peptide transport by micro-organisms for over ten years. Prior to that, several reviews presented a balanced description of transport and utilization of peptides by micro-organisms. From this nutritional standpoint, the essential, complementary role played by intracellular peptidases was also considered. In addition, attention was devoted to the particular opportunities conferred by peptide uptake compared with amino-acid transport, and to the advantages in possession of both types of systems. Overall, these reviews presented a largely phenomenological description of a developing research area (Payne, 1975, 1976, 1980d; Payne and Gilvarg, 1978; Matthews and Payne, 1980). The present review is restricted to consideration of the process of peptide transport in micro-organisms. Reflecting the main thrust of the intervening period, it concentrates on a molecular approach to the subject. Thus, it attempts to provide an integrated view of advances in understanding of the structures of transport components, their molecular mechanisms, synthesis and assembly, energetics and regulation. Application of this fundamental knowledge to exploitation of peptide permeases in the design of peptide-based antimicrobial compounds is also considered. Only when felt important for a balanced discussion is material covered in earlier reviews presented here. However, problems in adopting this approach need to be recognized. For, as G. K. Chesterton might have said, the disadvantage of not knowing the past is that you cannot fully understand the present.
Oribatei (Acari, Cryptostigmata) are found in a variety of terrestrial habitats, and many are associatcd with lichens; the relationship ranges from casual to highly dependent. Eighty-three species associatcd with lichens have been surveyed, and a tentative classification, based on their ecological requirements, is presented: Group A consists of species restricted to lichens as a biotope, though occasionally occurring as accidenials in other habitats, Group B consists of species which while preferring lichens as a habitat and feeding source are also adapted to existence on other piants (though in some cases their immatures may be lichen-rescricted); Group C consists of species which, though frequently found on lichens, are equally common in other biotopes, particularly mosses, and must be regartled as much more generalized in their feeding habits. Certain aspects of oribatid-lichen specificity are discussed. The importance of orihatid-lichen associations from tihe polnt of view of soil fertility and energetics is empliasized.
The genus Squamidium, a group of mosses with a tropical to subtropical American-African distribution, consists of two sections and seven species (prior to this study 27 species were recognized): sect. Squamidium (S. leucotrichum, S. livens, S. isocladum, S. nigricans, S. brasiliense) and sect. Macrosquamidium (S. macrocarpum and S. diversicoma). Twenty-four names are treated as syn. nov., three are provisionally excluded pending an examination of their types, and one new combination is made: Orthostichopsis pilotrichelloides (Sehnem) Allen & Crosby. Section Squamidium ist characterized by immersed capsules, stolon leaves with entire margins, and a relatively high basal membrane. Section Macrosquamidium is characterized by exserted capsules, stolon leaves with sharply recurved marginal teeth, and a relatively low basal membrane. The genus is retained in the Meteoriaceae. Within the Meteoriaceae Squamidium, is most closely related to Zelotmeteorium from which it differs only by its lack of squarrose-recurved leaves and its more well-developed alar cells. Squamidium, which in the absence of sporophytes has been confused consistently with Orthostichopsis, is separated from that genus on the basis of its lack of pseudoparaphyllia, weaker costae, lack of a distinct region of reddish cells across the leaf base, and strongly decurrent alar cells.
As far as we are aware, no previous account of any kind regarding the freshwater and subaerial algal flora of Natal has been published, and the present investigation of one hundred different samples thus affords the first available data on this point. ...
Sesame, Sesamum indicum L. (syn.S. orientale L.) belongs to family Pedaliaceae and is perhaps the oldest oilseed crop known to man. It is an annual, maturing in 70 to 140 days, but usually in 105 days or less, and contains 45-60% oil in its small, flat, oblong seeds which, may be white, brown or black.
Chalastogastra (Hym.)
(1916)
Crépin (1891) arranged 55 species of Rosa into 15 sections. Three of those sections contain taxa native to the British Isles, and members of several further sections have been reported as naturelized. In the discussion below, accepted names are shown in bold, while rejected names are given in italics.
Dr. Nonfin (1931) in his book on the "Biology of the Amphibia", while discussing the inter-relationships of Pelobatidae, divides the family into Megophrynae, Pelobatinae and Sooglossinao und points out that among these three "the most primitive genus in the sub-family is the wide spread Megopluys or Megalophrys (including Leptobrachium)". ...
The ant genera Ankylomyrrna Bolton, Atopomyrmex Andre, Cyphoidris Weber, Ocymyrmex Emery, Pristomyrmex Mayr (= Odontomyrmex Andre, = Hylidris Weber, = Dodous Donisthorpe) and Terataner Emery (= Tranetera Arnold) are revised for the Ethiopian zoogeographical region. Keys and descriptions of species are presented for each genus and the genera are defined on a world-wide basis. In Atopomyrmex two species are recognized and four new infraspecific synonyms are established. Three new species are described in the previously monotypic genus Cyphoidris. Twenty-three species of Ocymyrmex are recognized of which seven are described as new; seven new synonyms are established and new Status as valid species is granted to seven previously infraspecific forms. Five Pristomyrmex species are recognized of which one is new; five new Synonyms are proposed in this genus. In Terataner the former subgenus Tranetera is newly synonymized and six species recognized, of which one is new. The six Terataner species of Madagascar are summarized, one new species is described and a key presented. The genus Baracidris is described as new, containing two new species from West and central Africa. A key to Ethiopian region myrmicine genera in which the antennal club has two Segments is given under Baracidris.
Evolutionary ecology and biogeography of recent stalked crinoids as a model for the fossil record
(1987)
Until recently, up to thirteen specics of the scincid genus, Scincus, were recognized, but examination of some 590 individuals frorn a wide range of localities suggests that only three or four are valid. Of these, S. mitranus is confined to eastern and southern Arabia and S. hemprichii probably to southwest Arabia. The remaining forms constitute the S. scincus complex, which may consist in North Africa of two largely allopatric species, S. scincus and S. albifasciatus, although evidence for this is not conclusive. The S. scincus complex is represented in southwest Asia by two forms : S. scincus meccensis in southern Jordan, northwest and west Arabia and S. s. conirostris in southern and eastern Arabia, Iraq and southwest Iran. Scincus appears to have evolved Erom a primitive scincine, very similar to members of the Eumeces schneideri group, especially E. (schneideri) algariensis; it does not seem to be directly related to the sympatric genus Scincopus. Within Scincus, the S. scincus complex is the least specialized component of the genus and both S. rnitranus and S. hemprechii may have been independently derived from it, or from a closely related form. Possibly the whole range of the genus was once occupied by a S. scincus-like species and its distribution was subsequently restricted by the onset of less desertic conditions leaving reduced populations in North Africa, southwest Arabia and southeast Arabia that gave rise to the S. scincus complex, S. hemprichii and S. mitranus respectively. A renewed expansion of arid areas could then have enabled the S. scincus complex to invade southwest Asia. Some of the characters of its most eastern subspecies, S. s. conirostris, may have arisen, or been maintained, by character displacement through contact with S. mitranus.
The last decade of research in the field of animal nutrition has Ied to the discovery of a new class of substances in the food stuffs constituting the animal dietary. These compounds have been designated "Vitamines, Accessory Factors of the Diet, Exogenous Hormones of the Diet". They are present in infinitesimal quantities in certain articles of the diet, but their role in the metabolic cycle is one of the greatest importance. Subsequent investigation has shown that they are essential for the wellbeing and even the life of the organism itself. Without these indispensable elements the animal cell is unable to maintain its activities unimpaired, or the adolescent subject to attain normal growth. Continued deprivation leads to disease and ultimately to cessation of life. The discovery of these cornpounds was the result of a generation's work on the etiology of two diseases - Beri-beri and Scurvy. These are now known as "Deficiency Diseases". Each of these pathological conditions is due to the dietary deficiency of a specific substance, which in the case of beri-beri is known as the "Anti-neuritic Vitamin" (Funk); "Water Soluble B substance" (McCollum). In the case of scurvy this element is called the "Antiscorbutic Substance". A third factor associated with fats of animal origin has been subsequently discovered, but its deficiency results in a general malnutrition of a chronic type complicated with Xerophthalmia.
Catalog of the mosses of Japan compiled by the author in 1991 was revised. This new catalog lists all names of genera and species of mosses described or reported from Japan, based on all literature available to the author up to the end of January 2004. The new catalog is comprised of 1,135 species of mosses belonging to 332 genera. These taxa are listed in alphabetical order. Each valid epithet is followed by author citation, literature, distributional area in Japan, and Japanese name.
Aeration in higher plants
(1979)
In order to elucidate what species among so many kind of marine organisms are likely to be consmed Iargely by the balaenopterid whales, the existing evidence on the food habits of baleen whales is reviewed. To meet with this primary purpose the report was mainly focussed on to describe qualitative aspects of food species having been known to date from the notable whaling grounds over the world rather than documenting quantitative subjects. One of interesting facts noticed throughout the contribution was that there exists fairly intense diversity in the assembly of food species composition by regions such as; northern hemisphere vs. southern hemisphere, Pacific region vs. Atlantic region, inshore waters vs. offshore waters, embayed waters vs. open waters, where the former usually shows more diversed complexity than the latter. The fact however suggests that although the composition of food species locally varies over the various whaling grounds, the food organisms as taxonomical groups are very similar one another even in locally isolated whaIing grounds when the food organisms and their assemblies are considered by the family or genus basis. In this connection many evidences given in the text may suggest that the balaenopterid whales as a whole may substantially live on quite simply compositioned forage assembly in comparison with tremendous variety of organisms existing in the marine ecosystems. One of important aspects of the baleen whales food must be found in their characteristics of forming dense swarms, schools, and/or aggregations in the shallower enough layers to be fed by the whales. The present and past status of larger baleen whales as the mighty monarch through their evolutional pathways may entirely depend upon the spatial distribution pattern of possible food organisms, i.e. the animal aggregations.
A systematic revision of the genus Dichaeu (Orchidaceae) in Costa Rica is presented. The taxonomic history of the genus and its phylogenetic position are discussed, with emphasis on infragenenc grouping. Characters of vegetative and floral morphology are treated, and their taxonoiilic significance is discussed. Twenty-nine Dichnea taxa are recognized for the flora of Costa Rica, and a key to species is provided. Each taxon is described on the basis of Costa Rican material, illustrated in a composite plate, and its distribution in the country is assessed. Distribution maps for all the taxa are given. Overall distribution, derivation of name, notes on species ecology, and diagnostic features are presented for each taxon. Lectotypes are selectcd for D. acostae Schltr., D. acroblephara Schltr., D. amparoana Schltr., D. costaricensis Schltr., D. dammeriana Kraenzl., D. lycopodioides Rchb. f. ex Kraenzl., D. poicillantha Schltr., D. selaginella Schltr., D. tuercklheimii Schltr., Epidendrum echinocarpon Sw., and E. trichocarpon Sw. A new species, D. gomez-lauritoi, is described and illustrated from the wet Caribbean plains of central Costa Rica.
A taxonomic revision of the genus Syntrichia Brid. (Pottiaceae, Musci) in the Mediterranean Region and Macaronesia has been carried out, thus contributing to knowledge of its distinguisliing morphological characters, geographic distribution and nomenclature. Some 3000 specimens, including the most of type material, were studied. An identification key, morphological descriptions, photographs and numerous observations on taxonomic and nomenclatural problems of the 23 taxa accepted in the study area, are provided. New records for some countries of the Mediterranean basin and Macaronesia are given. Five new Synonyms are proposed. The designations of 11 new lectotypes are included and the name Syntrichia aciphylla var. calva J.J. Amann is excluded from the genus Syntrichia.
This review study updates the Mediterranean fish species inventory (Agnatha, Gnathostoma). Comments upon regional particularities, endemicities, immigrations, emigrations and the recent movements of Mediterranean fauna are made. A comparafive analysis between the fish communities of the Mediterranean und those of neighbouring seas is sketched out.
This paper deals with the anthomyiid-flies from Korea. A total of 81 species belonging to 22 genera are represented in Korean fauna as the result, among them the following 9 species are proposed here new to science as: Anthomyia koreana sp. nov., Botanophila seungrnoi sp. nov., Acklandia koreacola sp. nov., Lasiomma monticola sp nov., Egle podulparia sp. nov., Delia expansa sp. nov., Phorbia soyosana sp. nov., P. dissimiiis sp. nov., P. taeguensis sp. nov., and 2 genera, Acklandia Hennig, 1976, Egle Robineau-Desvoidy, 1830, with the below 12 species are newly recorded from Korea as: Parapegomyia schineri, Nupedia debilis, Botanophila striolata, Egle muscaria, E. longipalpis, E. parvaeformis, E. panta, E. korpokkur, Paregle vetula, Delia tenuiventris, D. coronariae, Phorbia longipilis. Keys are given for all the taxa respectively, some illustrations of various characters for identification are provided. Arranged are host plants and domestic localities for each species.
The present work deals with the problem of the essential factor regulating the wing-stroke frequency in some insects in wing mutilation and loading experiments and in subatmospheric air pressure experiments. The diverse opinions concerning this factor, appearing in the literature, are reviewed. As appears in this review, one of two factors, the inertia of the wings or the resistance of the gas medium, is claimed to be the main regulator of the wingstroke frequency. Therefore two series of experiments have been performed. In the first series the correlation between the moment oi inertia of the wings and the wing-stroke frequency is examined. The wings are mutilated by cutting them transversely, longitudinally or obliquely or loaded with a drop of collodion. It is found that (1) the wing-stroke frequency is proportional to the -0.35th power of the moment of inertia of the wings, that (2) this applies to both mutilation and loading experiments, that (3) it makes no difference whether the procedures are equal or unequal on both sides or only one-sided, and that (4) the frequency tends not to rise above a certain lirnit in mutilation experiments. In the second series of experiments the correlation between the pressure of the gas medium and the wing-stroke frequency is examined. It is found that the effect of pressure varies greatly in different insects and may even be totally absent. The wing-stroke frequency is proportional to (pressure) exp 0 to (pressure) exp -0.25. The degree of the effect is found to depend on the size and the wing-stroke frequency of the insect; the effect is absent in big insects with a medium or high frequency, and more or less present in insects with a small size or with a low frequency. The results are discussed. A theory is constructed using well established physical concepts by considering the wings as acting simultaneously as bodies performing simple harmonic rotary motion and as paddles working against the air. It is assumed that the kinetic energy is destroyed after each single stroke. By making this assumption, the frequency in the energy equation is found to be, within a constant rate of energy output, proportional to the -0.33rd power of the moment of inertia of the wings, and thus agrees very well with the correlation between these factors found experimentally. Further it is found that the aerodynamic work of the wings is in most cases very much smaller than the work done in overcoming the effect of the inertia of the wings. It is negligible in big insects with, a medium or high frequency, but more or less significant in insects with a small size or a low frequency. The magnitude of this effect thus depends, in theory, on the size and the wing-stroke frequency, which entirely agrees with the effect of atmospheric pressure found experirnentally. The inferences drawn from this theory show that (1) the energy economy in a big insect is very wasteful, that (2) the rate of energy output is not greatly varied, that (3) it is profitable for the insect to vary the aerodynamic work of the wings by altering the amplitude rather than the frequency of the stroke, that (4) the distribution of energy in flight is delicately balanced, and that (5) the frequency must be low and the amplitude large in insects of great size and weight, and that a very high frequency and a small amplitude can be afforded only by small insects. Many such observations as have been made in nature agree with these inferences. Furthermore, (6) attempts are made to calculate the muscle efficiency in some insects on the basis of the theory. In Appendix I, the technique used to check and eliminate some sources of error in the methods is described, in Appendix II, an application of tlie theory to derive a law between the wing-stroke frequency and the morphological properties of insects is attempted, and in Appendix III, some laws relating different morphological properties of the wings of insects are described.
Gastropod molluscs were collected by the author between May and September 1962 from a variety of freshwater habitats in Ethiopia. Twenty-eight forms are represented in the collection of which a total of eleven have not been previously recorded from Ethiopia or have been recorded with doubt by previous authors. Two forms in each of the genera Bulinus and Ancylus appear to be new. It is considered that seven of the forms recorded from Ethiopia for the first time belong to the African component in the fauna, whereas only three are possibly of palaearctic origin. It is concluded that the wide distribution and diversity of some of the palaearctic forms justify the importance attached by Bacci (1951) to the palaearctic element in the molluscan fauna of the Ethiopian Plateau.
The present publication is intended to be a monograph on the family of Burmanniaceae. It is divided into three parts: General Part, Critical Part and Taxonomical Part. The first part, General Part, contains general remarks on the taxonomy, distribution and use of the family. The second part, Critical Part, contains general and geobotanical remarks on the genera of the family, whereas the third part, the Taxonomical Part, gives the determination keys to the tribes, subtribes, genera, sections, subsections and species, the description of these groups with literature, distribution and the indications of the types. New varieties, species and larger groups are described in the taxonomical part in foot-notes.
Shaped by some of the most dramatic tectonic events of the Cenozoic, the parts of southern and eastern Asia that have become known as the Oriental faunal region comprise vast areas of great geological complexity and ecological diversity. One of the four major groups of terrestrial elapid snakes in this region is the genus Bungarus. These nocturnal and predominantly ophiophagous snakes are widely known as kraits and are an important cause of snakebite mortality throughout their wide range that extends from Afghanistan to Vietnam and eastern China, and south to the Indonesian islands of Java and Bali. Although present on Borneo, kraits have not been found on any island of the Philippines, nor on Lesser Sunda Islands east of Bali. Despite their medical significance and the great importance of Bungarus toxins as tools in neuropharmacology, krait systematics and taxonomy have remained largely unstudied. Twelve species of Bungarus were recognized at the beginning of the present study. Many of these are rare in collections, and most aspects of their biology are unknown. While some species are highly distinct, most kraits are conservative morphologically, rendering molecular methods invaluable for the study of their diversity and biogeography. This study is the first to address the relationships within Bungarus and the historical biogeography of kraits based on molecular evidence. I inferred phylogeographic relationships based on analyses of new nucleotide sequences of the entire mitochondrial cytochrome b gene of 51 kraits and partial NADH dehydrogenase subunit 4 sequences of 40 kraits which I analyzed together with a representative sample of 32 published elapid and non-elapid outgroup taxa using Bayesian, maximum-likelihood, maximum-parsimony and neighbor-joining methods. I then used the recovered phylogeny to investigate the evolution of selected morphological characters and, together with collections-based geographical distribution information, in dispersal-vicariance analyses with models of variable taxonomic and biogeographic complexity. The phylogenetic analyses demonstrate that the current taxonomy of kraits does not adequately represent either the relationships or the genetic diversity in this genus. In contrast, I identified monophyletic groups that are congruent with recognized biogeographic units as well as extensive ecomorph evolution and morphologically cryptic speciation. The following additional conclusions are collectively supported by the mitochondrial phylogeny and morphological as well as biochemical synapomorphies: (1) Kraits are monophyletic with respect to the remaining taxa of the Elapidae; (2) Bungarus flaviceps and Bungarus bungaroides form the monophyletic sister clade of a clade formed by B. fasciatus, black-and-white-banded, and uniformly black taxa; (3) the remaining taxa are divisible into two sister clades, the South Asian species (Bungarus sindanus (Bungarus caeruleus, Bungarus ceylonicus)) vs. Himalayan, Burmese, Southeast and East Asian taxa; (4) within the latter, Burmese taxa form the sister clade to Southeast and East Asian taxa; (5) the widespread and medically significant species Bungarus candidus and Bungarus multicinctus are paraphyletic. The results of this study highlight the importance of vicariant geological events and sea level fluctuations for the cladogenesis of kraits. Events of particular importance in the evolution of kraits include the uplift of the Indo-Burman ranges (Arakan-Naga Hills) which separated black-and-white banded kraits in India and Southeast Asia, and the uplift of mountain ranges in Yunnan, China (e.g., the Gaoligong Shan), which coincided with lineage separation in two distantly related clades of kraits. Alternating dispersal and vicariance events due to Pleistocene climatic and sea level changes have caused complex phylogeographic patterns in kraits in Southeast Asia. Zones of contact between closely related evolutionary lineages of the B. candidus complex are identified in Thailand, Vietnam, and southern China (Hainan). Within this complex, two main clades are revealed. One includes populations from the Southeast Asian mainland and is in contact with B. multicinctus in southern China. The other consists of populations from Thailand, southern Vietnam, Java, and Bali. The phylogeny as well as genetic distances suggest a scenario in which a Pleistocene southward dispersal of B. candidus to Sumatra, Java, and Bali during times of low sea levels was temporarily interrupted by vicariant events (rising sea levels, especially flooding of the Malacca Strait between Sumatra and the Malay Peninsula, and of the Bali Strait between Java and Bali). In this context, the close phylogenetic relationship between haplotypes from southern Vietnam and those from Java and Bali suggests that "southern" B. candidus dispersed directly via colonization of the widely receded South Chinese Sea, and not by taking a detour via the Malay Peninsula and Thailand, which were already inhabited by other populations of B. candidus. Using these phylogenetic estimates as the framework for a study on the diversity and evolution of krait venom components, I applied biochemical and molecular genetic approaches to identify and quantify polypeptide and protein toxins in krait venom, focusing on the distribution and molecular evolution of alpha-bungarotoxin, an irreversible competitive antagonist of nicotinic acetylcholine receptors with an exceptionally high applied significance as a receptor probe. I was specifically interested in the medically relevant question of intraspecific and interspecific variability in toxin diversity, and whether receptor-binding postsynaptic toxins evolve at rates different from those of presynaptic neurotoxins like beta-bungarotoxin, which act by destroying the nerve terminal and are believed to exhibit hypervariable functional diversification due to an accelerated mode of molecular evolution. In the context of this question, I isolated and purified the major lethal neurotoxins from B. candidus venoms by sequential steps of liquid chromatography for structural and functional characterization studies. Cloning and sequence analysis of toxin-coding genomic DNAs showed that the gene encoding the alpha-bungarotoxin alanine-31 variant, originally isolated from B. multicinctus venom, is widely present and highly conserved in multiple populations of B. candidus and is expressed as the principal postsynaptic neurotoxin at least in Javan B. candidus. In addition to the widespread presence of genomic DNAs encoding the alpha-bungarotoxin alanine-31 variant, the present study also revealed the partial genes of three novel alpha-bungarotoxin isoforms in addition to the previously known alanine-31 and valine-31 variants, all of which share an invariant exon 3 coding region. While alpha-bungarotoxin is the principal postsynaptic neurotoxin of Taiwanese B. multicinctus and Javan B. candidus, the main postsynaptic neurotoxin of Thai B. candidus both by quantity and lethality was a novel polypeptide of similar toxicity with a mass of 8030 Da and 73 amino acid residues, whose characterization at the genetic and protein levels revealed a novel subgroup of krait neurotoxins, here named alpha-delta-bungarotoxins and represented by four sequences from Bungarus caeruleus and B. candidus. alpha-delta-Bungarotoxins share high sequence homology with alpha-bungarotoxins but the purified, 8030 Da alpha-delta-bungarotoxin-1 exhibits only reversible, low affinity binding to nicotinic receptors and high site-selectivity for the acetylcholine binding site at the alpha-delta-subunit interface of the receptor. These properties render alpha-delta-bungarotoxin not only the first snake long-chain neurotoxin with reversible binding and binding-site selectivity, but also an exciting natural tool with which to address structure-function relationships at the subunit interfaces of the human receptor. The results of comparisons of the number of non-synonymous nucleotide substitutions per nonsynonymous site (dN) to the number of synonymous nucleotide substitutions per synonymous site (dS) strongly suggest that positive selection is acting on exon 2 of the alpha-bungarotoxin and probably also of the alpha-delta-bungarotoxin genes. In addition, the numbers of nucleotide substitutions per site of intron (dI) compared to the dS value of the toxin-coding exon regions provide strong evidence for accelerated molecular evolution in exon 2 of alpha-delta-bungarotoxins —whose value of dI is only one-eighth of the value of dS—whereas the hypothesis of accelerated evolution is rejected for 13 unique genomic DNAs encoding five alpha-bungarotoxin isoforms from B. candidus and B. multicinctus....
Safety concerns associated with the use of viral vectors in gene therapy applications have attracted considerable attention towards the development of nonviral vectors as alternatives for DNA delivery. While nonviral vectors are commonly not associated with safety problems, they are still very inefficient compared to viral vectors, and require significant improvements to approach the efficiency of their viral counterparts. Meanwhile ligands or single-chain antibody fragments that bind to cell surface receptors for increased and/or specific cellular uptake, endosome escape activities, and nuclear localization sequences (NLSs) to enhance transport of plasmid DNA into the nucleus, have become available that can be incorporated into nonviral vectors to improve their efficacy. However, as gene delivery is a multistep process, the challenge is to incorporate multiple of these functional elements into a single nonviral vector system, while retaining their specific activities. A promising method to attach such entities to plasmid DNA is the use of multifunctional fusion proteins that bind to DNA through a DNA-binding domain. In principle, two types of DNA-binding domains/proteins can be used to anchor additional functional domains or peptides to a plasmid, namely sequence-specific DNA-binding domains, described in the first part of this thesis, or those that bind DNA independent of its sequence, exemplified in the second part of this work by a derivative of the human HMGB2 protein. The first fusion protein constructed and analyzed contained the E. coli LexA repressor as a sequence-specific DNA-binding domain. In addition, this DNA-carrier protein, termed TEL, included a bacterial translocation domain as an integrated endosome escape activity, and human TGF-a for specific targeting to the EGF-receptor (EGFR). TEL was expressed in E. coli and purified under both native and denaturing conditions. Purified, denatured TEL was refolded and subsequently shown to bind specifically to EGFR-expressing cells. However, inclusion of TEL in complexes of plasmid DNA and poly-L-lysine (pL) did not lead to increased gene delivery into EGFR-expressing COS-1 cells. Most likely this was due to the absence of DNA-binding activity of the LexA moiety in TEL. In contrast, native TEL was able to interact specifically with DNA. Nevertheless, since this interaction was rather weak, and refolding of denatured TEL had not resulted in functional activity of all of its protein domains, it seemed unlikely that fusion proteins containing LexA would exhibit gene transfer capabilities superior to those of similar DNA-carrier proteins previously constructed in our group. Further work therefore focused on the use of the E2C-Sp1C protein as an alternative sequencespecific DNA-binding domain. This artificial zinc-finger protein was fused to the single-chain antibody fragment scFv(FRP5), directed against the human ErbB2 growth factor receptor. The resulting 5-E2C fusion protein was expressed in E. coli and purified under native and denaturing conditions. Refolded and native 5-E2C were found to bind specifically to ErbB2-expressing cells, indicating that scFv(FRP5) in 5-E2C was functional in both preparations. In contrast, whereas refolded 5-E2C bound DNA only weakly, significant DNA binding was observed for native 5-E2C. In addition, it could not only be shown that the interaction of native 5-E2C with DNA containing its recognition sequence was specific, but also that this protein was able to bind DNA and recombinant ErbB2 simultaneously, demonstrating the functionality of both domains in native 5-E2C. Despite these encouraging results, the inclusion of native 5-E2C in pL- or polyethyleneimine (PEI)-DNA complexes did not lead to an (5-E2C-specific) enhancement of gene transfer efficiency, irrespective of the presence of the endosome-disruptive reagent chloroquine during transfection. In the second part of this thesis an alternative approach for the development of DNA-carrier proteins for nonviral gene delivery is described, based on human HMGB2, a DNA-binding protein without sequence specificity. HMGB2 contains an acidic C-terminus that has been found to decrease the affinity of the protein for DNA. Therefore, this C-terminal tail was deleted, resulting in an HMGB2-variant consisting of amino acids 1-186. HMGB2186, purified under native conditions from E. coli lysates, was able to interact with DNA and bound to the surface of different cell lines. Importantly, after binding to plasmid DNA HMGB2186 mediated gene delivery into COS-7 cells with higher efficiency than pL. In addition, HMGB2186-mediated gene transfer was strongly enhanced in the presence of chloroquine, indicating that the endocytic pathway was involved in cellular uptake. To improve internalization and intracellular routing of HMGB2186 as a DNA-carrier, a derivative containing the TAT47-57 cell-penetrating peptide (CPP), reported to facilitate cell entry independent of endocytosis, was constructed. Since this peptide also contains an NLS, in addition an HGMB2186-variant containing the SV40-NLS was constructed to investigate the effect of a peptide that has only nuclear localizing properties. Interestingly, the resulting TAT-HMGB2186 and SV40-HMGB2186 fusion proteins displayed DNA-binding activities similar to HMGB2186, but mediated gene delivery into different cell lines clearly more efficiently than the parental molecule. Furthermore, the efficacy of both fusion proteins was enhanced markedly in the presence of chloroquine, an indication that endocytosis was involved in the transfection process mediated by these proteins. This suggests that the increased transfection efficiency observed for TAT-HMGB2186 was more likely due to the NLS function present in the TAT47-57 peptide, rather than to its ‘cell penetrating properties’. Finally, the incorporation of functional peptides derived from human proteins into HMGB2186 was investigated. An uncharged CPP originating from Kaposi-FGF, reported to facilitate efficient cellular uptake of fused protein domains in an endocytosis-independent manner, was fused to HMGB2186 together with the SV40-NLS. Interestingly, the resulting KSV40-HMGB2186 fusion protein bound DNA similarly as previously tested DNA-carrier proteins, but did not mediate enhanced transfection compared to HMGB2186. In addition, the importin-b-binding (IBB) domain derived from human importin-a2 was investigated as a component of a DNA-carrier protein. Since the IBB domain can function as an NLS, it was fused to HMGB2186 resulting in the DNA-carrier protein IBBHMGB2186. Although IBB-HMGB2186 bound DNA in a similar manner as the other HMGB2186-derivatives, gene delivery mediated by IBB-HMGB2186 was only as effective as HMGB2186 mediated transfection, suggesting no significant role of the IBB domain. However, addition of chloroquine resulted in a remarkable enhancement of IBB-HMGB2186-mediated gene transfer, which was now more efficient than with any other HMGB2186-variant tested, and not much lower than gene transfer mediated by PEI, one of the most efficient transfection reagents available to date. To enhance nonviral gene delivery even further, the HMGB2186-based DNA-carrier proteins described in this thesis might now serve as building blocks for novel fusion proteins that include additional complementing activities. In this respect it seems particularly promising that, under conditions of effective end some escape, IBB-HMGB2186, which consists entirely of protein domains of human origin, was the most efficient of all proteins tested in this work.