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In this work data of the NA49 experiment at CERN SPS on the energy dependence of multiplicity fluctuations in central Pb+Pb collisions at 20A, 30A, 40A, 80A and 158A GeV, as well as the system size dependence at 158A GeV, is analysed for positively, negatively and all charged hadrons. Furthermore the rapidity and transverse momentum dependence of multiplicity fluctuations are studied. The experimental results are compared to predictions of statistical hadron-gas and string-hadronic models. It is expected that multiplicity fluctuations are sensitive to the phase transition to quark-gluon-plasma (QGP) and to the critical point of strongly interacting matter. It is predicted that both the onset of deconfinement, the lowest energy where QGP is created, and the critical point are located in the SPS energy range. Furthermore, the predictions for the multiplicity fluctuations of statistical and string-hadronic models are different, the experimental data might allow to distinguish between them. The used measure of multiplicity fluctuations is the scaled variance omega, defined as the ratio of the variance and the mean of the multiplicity distribution. In the NA49 experiment the tracks of charged particles are detected in four large volume time projection chambers (TPCs). In order to remove possible detector effects a detailed study of event and track selection criteria is performed. Naively one would expect Poisson fluctuations in central heavy ion collisions. A suppression of fluctuations compared to a Poisson distribution is observed for positively and negatively charged hadrons at forward rapidity in Pb+Pb collisions. At midrapidity and for all charged hadrons the fluctuations are larger than the Poisson ones. The fluctuations seem to increase with decreasing system size. It is suggested that this is due to increased relative fluctuations in the number of participants. Furthermore, it was discovered that omega increases for decreasing rapidity and transverse momentum. A hadron-gas model predicts different values of omega for different statistical ensembles. In the grand-canonical ensemble, where all conservation laws are fulfilled only on the average, not on an event-by-event basis, the predicted fluctuations are the largest ones. In the canonical ensemble the charges, namely the electrical charge, the baryon number and the strangeness, are conserved for each event. The scaled variance in this ensemble is smaller than for the grand-canonical ensemble. In the micro-canonical ensemble not only the charges, but also the energy and the momentum are conserved in each event, the predicted $omega$ is the smallest one. The grand-canonical and canonical formulations of the hadron-gas model over-predict fluctuations in the forward acceptance. In contrast to the experimental data no dependence of omega on rapidity and transverse momentum is expected. For the micro-canonical formulation, which predicts small fluctuations in the total phase space, no quantitative calculation is available yet for the limited experimental acceptance. The increase of fluctuations for low rapidities and transverse momenta can be qualitatively understood in a micro-canonical ensemble as an effect of energy and momentum conservation. The string-hadronic model UrQMD significantly over-predicts the mean multiplicities but approximately reproduces the scaled variance of the multiplicity distributions at all measured collision energies, systems and phase-space intervals. String-hadronic models predict for Pb+Pb collisions a monotonous increase of omega with collision energy, similar to the observations for p+p interactions. This is in contrast to the predictions of the hadron-gas model, where omega shows no energy dependence at higher energies. At SPS energies the predictions of the string-hadronic and hadron-gas models are in the same order of magnitude, but at RHIC and LHC energies the difference in omega in the full phase space is much larger. Experimental data should be able to distinguish between them rather easily. Narrower than Poissonian (omega < 1) multiplicity fluctuations measured in the forward kinematic region (1<y(pi)<y_{beam}) can be related to the reduced fluctuations predicted for relativistic gases with imposed conservation laws. This general feature of relativistic gases may be preserved also for some non-equilibrium systems as modeled by the string-hadronic approaches. A quantitative estimate shows that the predicted maximum in fluctuations due to a first order phase transition from hadron-gas to QGP is smaller than the experimental errors of the present experiment and can therefore neither be confirmed nor disproved. No sign of increased fluctuations as expected for a freeze-out near the critical point of strongly interacting matter is observed.
A graph theoretical approach to the analysis, comparison, and enumeration of crystal structures
(2008)
As an alternative approach to lattices and space groups, this work explores graph theory as a means to model crystal structures. The approach uses quotient graphs and nets - the graph theoretical equivalent of cells and lattices - to represent crystal structures. After a short review of related work, new classes of cycles in nets are introduced and their ability to distinguish between non-isomorphic nets and their computational complexity are evaluated. Then, two methods to estimate a structure’s density from the corresponding net are proposed. The first uses coordination sequences to estimate the number of nodes in a sphere, whereas the second method determines the maximal volume of a unit cell. Based on the quotient graph only, methods are proposed to determine whether nets consist of islands, chains, planes, or penetrating, disconnected sub-nets. An algorithm for the enumeration of crystal structures is revised and extended to a search for structures possessing certain properties. Particular attention is given to the exclusion of redundant nets and those, which, by the nature of their connectivity, cannot correspond to a crystal structure. Nets with four four-coordinated nodes, corresponding to sp3 hybridised carbon polymorphs with four atoms per unit cell, are completely enumerated in order to demonstrate the approach. In order to render quotient graphs and nets independent from crystal structures, they are reintroduced in a purely graph-theoretical way. Based on this, the issue of iso- and automorphism of nets is reexamined. It is shown that the topology of a net (that is the bonds in a crystal) constrains severely the symmetry of the embedding (that is the crystal), and in the case of connected nets the space group except for the setting. Several examples are studied and conclusions on phases are drawn (pseudo-cubic FeS2 versus pyrite; α- versus β- quartz; marcasite- versus rutile-like phases). As the automorphisms of certain quotient graphs stipulate a translational symmetry higher than an arbitrary embedding of the corresponding net would show, they are examined in more detail and a method to reduce the size of such quotient graphs is proposed. Besides two instructional examples with 2-dimensional graphs, the halite, calcite, magnesite, barytocalcite, and a strontium feldspar structures are discussed. For some of the structures it is shown that the quotient graph which is equivalent to a centred cell is reduced to a quotient graph equivalent to the primitive cell. For the partially disordered strontium feldspar, it is shown that even if it could be annealed to an ordered structure, the unit cell would likely remain unchanged. For the calcite and barytocalcite structures it is shown that the equivalent nets are not isomorphic.
Synchronized neural activity in the visual cortex is associated with small time delays (up to ~10 ms). The magnitude and direction of these delays depend on stimulus properties. Thus, synchronized neurons produce fast sequences of action potentials, and the order in which units tend to fire within these sequences is stimulusdependent, but not stimulus-locked. In the present thesis, I investigated whether such preferred firing sequences repeat with sufficient accuracy to serve as a neuronal code. To this end, I developed a method for extracting the preferred sequence of firing in a group of neurons from their pair-wise preferred delays, as measured by the offsets of the centre peaks in their cross-correlation histograms. This analysis method was then applied to highly parallel recordings of neuronal spiking activity made in area 17 of anaesthetized cats in response to simple visual stimuli, like drifting gratings and moving bars. Using a measure of effect size, I then analyzed the accuracy with which preferred firing sequences reflected stimulus properties, and found that in the presence of gamma oscillations, the time at which a unit fired in the firing sequence conveyed stimulus information almost as precisely as the firing rate of the same unit. Moreover, the stimulus-dependent changes in firing rates and firing times were largely unrelated, suggesting that the information they carry is not redundant. Thus, despite operating at a time scale of only a few milliseconds, firing sequences have the strong potential to provide a precise neural code that can complement firing rates in the cortical processing of stimulus information.
Genetic analysis of salt adaptation in Methanosarcina mazei Gö1 : the role of abl, ota and otb genes
(2008)
1. M. mazei ist ein halotolerantes methanogenes Archäon und akkumuliert kompatible Solute als längerfristige Anpassung an erhöhte Osmolarität in der Umgebung. Bei intermediären Salzkonzentrationen (~ 400 mM NaCl) wird vorzugsweise α-Glutamat gebildet und bei höheren Salzkonzentrationen (~ 800 mM NaCl) wird Nε-Acetyl-ß-Lysin zusätzlich zu Alpha-Glutamat synthetisiert. 2. Eine Analyse der intrazellulären Solutezusammensetzung mittels NMR ergab, dass M. mazei Glycin-Betain als Osmolyt akkumulieren kann. Für die Aufnahme von Glycin-Betain konnten zwei putative Glycin-Betain-Transporter in M. mazei identifiziert werden, Ota und Otb. Ota steht für „osmoprotectant transporter A“ und Otb für „osmoprotectant transporter B“. Das Genom von M. mazei wurde, nachdem es vollstänidg sequenziert war, nach Genen durchsucht, die eine Rolle bei der Aufnhame von Glycin-Betain oder anderen kompabtiblen Solute spielen könnten. Dafür wurde die Sequenz eines Substratbindeproteins eines bekannten bakteriellen Glycin-Betain-Transporters, opuAC aus B. subtillis als Referenzsequenz verwendet. Hierbei konnte ein Homolog, otaC, in M. mazei identifiziert werden. otaC ist Teil eines Genclusters, welches für einen ABC-Transporter kodiert. otb wurde bei einer genomweiten Expressionsanalyse zur Salzadaptation von M. mazei identifiziert. Es wurden Gene eines putativen ABC-Transporters identifiziert, die unter Hochsalzbedingungen leicht induziert waren. Es stellte sich heraus, dass es sich hierbei um einen zweiten putativen Glycin-Betain-Transporter handelte. Otb gehört auch zur Familie der ABC-Transporter. Vergleichsanalysen zeigten, dass die beiden Transporter keine große Ähnlichkeit zueinander aufweisen. Die Funktion und Rolle der beiden ABC-Transporter, vor allem von Otb, war zu Beginn dieser Arbeit unklar. 3. Bei Analysen des intrazellulären Solutepools im Wildtyp von M. mazei stellte sich heraus, dass in Anwesenheit von Glycin-Betain die Konzentration von Glutamat und NE- Acetyl-ß-Lysin verringert war. Bei 400 mM NaCl reduzierte Glycin-Betain die Glutamat- Konzentration um 16% und bei 800 mM NaCl um 29%. Besonders deutlich zeigte sich der Einfluß von Glycin-Betain bei der Akkumulation von NE-Acetyl-ß-Lysin. Bei 400 mM NaCl reduzierte Glycin-Betain die Konzentration an NE-Acetyl-ß-Lysin um 60% und bei 800 mM NaCl um 50%. Der Einfluß von Glycin-Betain konnte auf verschiedenen Ebenen in M. mazei beobachten werden. Es konnte gezeigt werden, dass die relative Transkriptimenge von ota unter Hochsalzbedingungen zunimmt. Glycin-Betain reduzierte die Transkription von ota bei verschiedenen Salzkonzentrationen. Die relative Transkriptmenge an mRNA von ota wurde mittels quantitativer real-time PCR (qRT-PCR) quantifiziert und war bis zu 52% reduziert in Zellen, die in Gegenwart von Glycin-Betain gewachsen waren. Die Transkriptmenge von otb war unter den gleichen Bedingungen nicht beeinflusst und zeigte generell keine Zunahme mit der Salinität des Mediums. Des Weiteren konnte ein Effekt von Glycin-Betain auf Ebene der Transportaktivität von Ota gezeigt werden. Hier zeigte sich, dass Zellen, die bei 400 mM NaCl in Gegenwart von Glycin-Betain gezogen waren, eine geringere Transportaktivität aufweisen, als Zellen, die bei 400 mM NaCl ohne Glycin-Betain gewachsen waren. Die Transportaktivität war um 90% geringer. Es muss jedoch berücksichtigt werden, dass es sich bei den Zellen, die ohne Glycin-Betain gewachsen waren, um eine Nettoaufnahme von Glycin-Betain handelte. Im Gegensatz dazu, ist davon auszugehen, dass Zellen, die in Gegenwart von Glycin-Betain gewachsen waren, eine Austaschreaktion zwischen bereits vorhandenem intrazellulärem und extrazellulär angebotenem Glycin-Betain vornehmen. [Die dem letzten Punkt zugrundeliegenden Daten wurden von Silke Schmidt im Rahmen einer Diplomarbeit erhoben, die von mir mitbetreut wurde. Aus Gründen der vollständigen Darstellung des Projektverlaufes werden diese Daten mitaufgeführt.] 4. Zur weiteren Klärung der Rolle und Funktion der beiden putativen Glycin-Betain- Transporter Ota und Otb war es Ziel, Mutantenstudien durchzuführen. Eine Vorraussetzung für die Generierung von Mutanten ist, dass der Organismus auf Agarplatten wächst und Einzelkolonien von einer einzelnen Zelle ausgehend bildet. Dies ist ein wichtiger Punkt bei Methanosarcina spp., die Zellpakete, sogenannte Sarcinen bilden. Deshalb wurde zunächst nach den optimalsten Plattierungsbedingungen gesucht, unter denen M. mazei keine Sarcinen bildet und die Plattierungseffizienz am höchsten war. Die Plattierungseffizienz betrug im Durchschnitt 54%. Für das Einbringen von DNA in die Zellen wurde eine Liposomen-vermittelte Transformation getestet. Ein ähnliches Vorgehen war bereits für Methanosarcina acetivorans beschrieben, konnte bislang aber noch nicht erfolgreich für M. mazei Gö1 und andere Stämme von M. mazei angwendet werden. Erste Schritte zur Anpassung des Transformations-Protokolles beinhalteten das Testen von DOTAP verschiedener Hersteller, sowie die Konzentration an eingesetzter DNA. Das jeweilige Zielgen/Zieloperon, welches deletiert werden sollte, wurde durch eine pac-Kassette ersetzt. Diese kodiert für eine Puromycin-Transacetylase und verleiht dem Organismus Puromycin- Resistenz. Die pac-Kassette wurde von umgebenden Bereichen des Ziellocus flankiert und integrierte mit Hilfe dieser flankierenden Bereiche über doppelt-homologe Rekombination in das Genom. 5. Mit dem oben beschriebenen Verfahren wurden ota::pac- und otb::pac-Mutanten erzeugt und über Southern-Blot Analyse verifiziert. Eine erste Charakterisierung der Mutanten mittels qRT-PCR zeigte, dass auf mRNA-Ebene keine Transkripte von ota in M. mazei ota::pac oder otb in M. mazei otb::pac nachweisbar waren. Zusätzlich konnte auf Proteinebene das Substratbindeprotein OtaC in M. mazei ota::pac und OtbC in M. mazei otb::pac nicht über einen Antikörper gegen das jeweilige Substratbindeprotein nachgewiesen, was die erfolgreiche Deletion bestätigte. Erste phänotypische Charakterisierungen zeigten, dass das Wachstum von M. mazei ota::pac und M. mazei otb::pac unter Hochsalzbedingungen nicht beeinträchtigt und vergleichbar mit dem des Wildtyps war. Auch bei kälteren Wachstumstemperaturen von 22°C wuchsen die Mutanten ohne Phänotyp. 6. Radioaktive Transportstudien mit M. mazei otb::pac zeigten, dass diese Mutante, die noch ein funktionelles Ota besitzt, [14C]Glycin-Betain aufnehmen kann. Es stellte sich heraus, dass diese Mutante eine höhere Transportrate für Glycin-Betain aufwies, als der Wildtyp. Die Aufnahmerate war um einen Faktor 2 höher als beim Wildtyp. Zusätzlich konnten qRT-PCR Analysen zeigen, dass die relative Transkriptmenge an ota in der otb::pac-Mutante um einen Faktor 2 höher war, als im Wildtyp. Umgekehrt konnte dieser Effekt nicht beobachtet werden, d.h. eine erhöhte Transkriptmenge an otb in M. mazei ota::pac. Auf Proteinebene konnte beobachtet werden, dass die intrazelluläre Konzentration an OtaC in der Mutatne leicht höher war als im Wildtyp. Jedoch stellte sich heraus, dass die intrazelluläre Glycin-Betain-Konzentration bei 400 mM NaCl in der Mutante nicht erhöht war verglichen mit Wildtyp, sondern die Konzentrationen gleich waren. Bei höheren Salzkonzentrationen (800 mM NaCl) zeigte sich jedoch ein anderes Bild: die intrazelluläre Glycin-Betain-Konzentration war in der Mutante um 60% erhöht. Dies könnte auf die erhöhte Transportaktivität von M. mazei otb::pac zurückzuführen sein. Die Konzentration anderer kompatibler Solute wie Glutamat und NE-Acetyl-ß-Lysin waren in diesen Zellen bis zu 48% reduziert. In vorherigen Studien konnte gezeigt werden, dass heterolog überproduziertes Ota von M. mazei in E. coli MKH13, eine E. coli-Mutante, die keine Glycin-Betain-Transporter mehr besitzt, die Aufnahme von Glycin-Betain wieder herstellen konnte [die Daten von ota in E. coli MKH13 wurden in der bereits oben erwähnten Diplomarbeit von Silke Schmidt erhoben]. Zur Klärung der Funktion von Otb wurde der gleiche Versuch mit otb in E. coli MKH13 durchgeführt. Jedoch konnte eine heterologe Produktion von Otb aus M. mazei die Aufnahme von Glycin-Betain in E. coli MKH13 nicht wieder herstellen. Hierbei wurde über Western-Blot Analyse sichergestellt, dass Otb tatsächlich in der Membran vorhanden war. Auch Transportstudien mit der Mutante M. mazei ota::pac zeigten, dass diese Mutante kein [14C]Glycin-Betain mehr aufnehmen konnte. Es konnte auch keine Akkumulation von Glycin-Betain mittels NMR in dieser Mutante gemessen werden. Des Weiteren zeigte sich, dass die intrazellulären Konzentrationen an Glutamat und Nε-Acetyl-ß-Lysin bei 400 mM und 800 mM NaCl in der Mutante unbeeinflusst von der Glycin-Betain-Konzentration im Medium waren. Weitere Transportstudien mit M. mazei ota::pac zur Aufnahme von [14C]Cholin zeigten, dass dieses Molekül weder vom Wildtyp, noch von der Mutante aufgenommen wurde. Dieses Ergebnis wurde durch Messung des Solutepools mittels NMR bestätigt. Somit kann ausgeschlossen werden, dass Otb unter den gemessenen Bedingungen weder ein Glycin- Betain-Transporter noch ein Cholin-Transporter in M. mazei ist. Diese Beobachtungen belegen eindeutig, dass Ota der einzige funktionelle Glycin-Betain-Transporter in M. mazei ist, während die Rolle von Otb bislang noch ungeklärt ist. 7. Nε-Acetyl-ß-Lysin, das dominante kompatible Solut in M. mazei bei 800 mM NaCl, wird durch die Enzyme AblA, einer Lysin-2,3-Aminomutase und AblB, einer ß-Lysin- Acetyltransferase synthetisiert. In dieser Arbeit wurde eine Δabl::pac-Mutante generiert, um die Fragen zu klären, ob die beiden Enzyme vom postulierten abl-Operon kodiert werden und wenn ja, welchen Phänotyp eine Nε-Acetyl-ß-Lysin-freier-Mutante bei Salzstress zeigt. NMR-Analysen zeigten, dass in der abl::pac-Mutante kein Nε-Acetyl-ß-Lysin mehr nachweisbar war. Dies belegt, dass die Gene ablA und ablB und deren Genprodukte für die Synthese von NE-Acetyl-ß-Lysin in M. mazei essentiell sind. Unter Hochsalzbedingungen ist das Wachstum von M. mazei abl::pac im Vergleich zum Wildtyp deutlich verlangsamt. Dieses Ergebnis war unerwartet, da eine abl::pac-Mutante von Methanococcus maripaludis unter Hochsalzbedingungen nicht mehr wachsen konnte. Unter Niedrigsalz und bei intermediären Salzkonzentration war das Wachstum von M. mazei abl::pac nicht eingeschränkt und verhielt sich wie der Wildtyp. In Gegenwart von Glycin-Betain akkumulierte die abl::pac-Mutante von M. mazei unter Hochsalzbedingungen 2,4 mal mehr Glycin-Betain als der Wildtyp, um das Defizit im Solutepool auszugleichen und Wachstum bei Hochsalz zu ermöglichen. Dadurch war sie in der Lage, wieder wie der Wildtyp zu wachsen. 8. Der Verlust von NE-Acetyl-ß-Lysin wurde unter Hochsalzbedingungen durch erhöhte Konzentrationen an Glutamat und einem neuen kompatiblen Solut kompensiert. NMRAnalysen zeigten, dass es sich hierbei um Alanin handelte. Bis jetzt wurde die Verwendung von Alanin als kompatibles Solut noch nie beschrieben. Um sicherzustellen, dass Alanin als kompatibles Solut in M. mazei abl::pac dient, wurde die Konzentration bei verschiedenen Salzkonzentrationen gemessen. Die Konzentration an Alanin nahm mit steigender Salzkonzentration zu. Bei 800 mM NaCl war die Konzentration 12 fach erhöht verglichen mit der Konzentration bei 400 mM NaCl. Außerdem redzierte Glycin-Betain die Alanin- Konzentration bei 800 mM NaCl um 58%. Transportexperimente zeigten, dass M. mazei kein Alanin aus dem Medium aufnehmen kann. 9. Erste Analysen möglicher Synthesewege für Alanin zeigten, dass die Alanin- Dehydrogenase nicht auf Transkriptebene unter Hochsalzbedingungen induziert war und somit keine Rolle in der Synthese von Alanin als kompatibles Solut spielen dürfte. Es könnten jedoch Aminotransferasen eine Rolle bei der Biosynthese von Alanin spielen. Des Weiteren sind die Enzyme, die für die Synthese von Glutamat als kompatibles Solut verantwortlich sind, unbekannt. Dies gilt für alle bis jetzt untersuchten Organismen, die Glutamat als kompatibles Solut nutzen. In dieser Arbeit wurde versucht, mit Hilfe der abl::pac-Mutante, die erhöhte Glutamat-Mengen zum Osmoschutz produziert, der Frage nachzugehen, welche Gene/Enzyme eine Rolle spielen könnten bei der Synthese von Glutamat als kompatibles Solut. Dazu wurden unter Hochsalzbedingungen die Transkriptmengen verschiedener Genen, die an der Glutamat-Synthese beteiligt sein könnten, in der Mutante und im Wildtyp untersucht. Hierbei zeigte sich, dass mehrere Gene verschiedener Enzyme unter Hochsalzbedingungen in der Mutante leicht induziert waren. Eines dieser Enzyme ist die Glutaminsynthetase. Dieses Enzym ist für die Umsetzung von Glutamat zu Glutamin unter Verbrauch von ATP verantwortlich. M. mazei besitzt zwei Gene, die für eine putative Gluaminsynthetase kodieren. In M. mazei abl::pac ist unter Hochsalzbedingungen das Gen glnA2 im Vergleich zum Wildtyp (4,03 ± 1,14) leicht induziert (7,63 ± 2,2). Des weiteren konnte in der Mutante eine leichte Induktion von gltB1, gltB2 und gltB3 unter Hochsalz beobachtet werden. Diese Gene kodieren für die einzelnen Domänen einer Glutamatsynthase. Diese ersten Analysen geben einen Hinweis darauf, dass die Synthese von Glutamat als kompatibles Solut über eine gekoppelte Reaktion der Glutaminsynthetase und der Glutamatsynthase verlaufen könnte.
In the present work, the photo-protection mechanisms in plants and purple bacteria were investigated experimentally at the molecular level. For this purpose, several spectroscopic methods were combined and applied to elucidate the function of carotenoids, pigments of the photosynthetic apparatus, in photo-protection. The experiments were focused on the mechanisms involved in quenching of singlet and triplet states of the electronically excited (bacterio)chlorophylls. This photosynthetic reaction events occur on an ultrafast time-scale. Measuring such short-lived events, and understanding the underlying principles, demand some of the most precise experiments and exact measurement technologies currently available. This implies certain requirements for the light source used: a suitable wavelength within the absorption band of the sample, sufficient power, and, most importantly, a pulse duration short compared to the studied reaction. Nowadays, we can achieve all this requirements using femtosecond-spectroscopic systems, which produce laser pulses shorter than 100 femtoseconds (fs). Transient absorption spectroscopy provides important information on molecular dynamics interrogating electronic transitions. The technique is based on photochemical generation of transient species with femtoseconds pump pulses and measuring transient absorption changes of the sample using a second, time delayed probe pulse which in this case is a spectrally broad white-light pulse.
The function of APOBEC3G in the innate immune response against the HIV infection of primary cells
(2008)
In the past few years the regulation of HIV-1 replication by cellular cofactors has been a major topic of ongoing research. These factors potentially represent new targets for antiviral therapy as resistance will be minimized. However this requires a better understanding of the interaction of HIV-1 with these cellular factors and the immune system. The virus infects the cells of the immune system, beginning with macrophages and dendritic cells as primary target cells during transmission. The cellular cofactor, APOBEC3G was found to be an antiviral factor in macrophages, dendritic cells and primary T cells. APOBEC3G is a cytidindeaminase which causes G->A hypermutations in the HIV-Genome. Another protein which has a strong inhibitory effect on the HIV infection is Interferon alpha (IFN-alpha), however the exact reason for this has not yet been elucidated. The bacterial protein, Lipopolysaccharide (LPS) also induces a strong antiviral state in macrophages. In micro-array analysis it was shown that APOBEC3G was upregulated after the stimulation with both IFN-alpha and LPS in macrophages. The goal of this work was to investigate the role of APOBEC3G in the innate immune response to APOBEC3G. For this, the expression of APOBEC3G was examined in HIV-1 target cells after stimulation with IFN-alpha or LPS and the effect of the protein on the viral infection was examined. In the first experiments it could be shown through real time quantitative PCR that APOBEC3G was overexpressed after the stimulation with IFN-alpha or LPS. This result could be shown in monocytes derived macrophages from different blood donors. It was also shown that the overexpression of APOBEC3G correlated directly with the concentration of IFN-alpha. Through mutational analysis it could be then shown that the overexpressed APOBEC3G protein was also functional in the cells. In order to show that this was the result of APOBEC3G, the protein was the regulated through lentiviral vectors. After transduction of cell lines with lentiviral vectors containing APOBEC3G, the infection was inhibited by up to 70%. The infection was restored after the addition of shRNAs against APOBEC3G. For the further experiments, CD34+ stem cells were used. The cells were transduced the day after thawing with lentiviral vectors containing an eGFP marker gene and either APOBEC3G or shRNAs against APOBEC3G. The CD34+ cells were then cultivated and differentiated to macrophages. The cells transduced with Lentiviral vectors containing APOBEC3G had a very high expression of APOBEC3G in the cells, however the cells transduced with shRNA against APOBEC3G did not show a reduction in the protein expression. The infectivity of the transduced CD34+ and CD34 derived macrophages was then examined. It was expected that the cells transduced with APOBEC3G would show a reduced HIV-1 infection, and the cells transduced with shRNA against APOBEC3G would show an increase in infection. After the transduction and differentiation the CD34+ cells from the 3 donors were stimulated and infected with wild type HIV-1 and Vif defective HIV-1 virus. Vif is a viral protein that can bind to APOBEC3G leading it to the proteasome for degradation. The cells from the first donor transduced with APOBEC3G, were very difficult to infect. In general the shRNA against APOBEC3G had little effect on the course of infection; presumably, the shRNA against APOBEC3G was not active in most of these cells. Only the cells from the first donor showed an increase in HIV infection after the transduction with the shRNAs against APOBEC3G, this was most notably the case in the cells stimulated with IFN-alpha, which usually show very little infection. This work showed that APOBEC3G plays an important role in the innate immune response to HIV-1. The effect of APOBEC3G is both cell type as well as donor dependent. Recently, an interesting study also showed that there is a correlation between the expression of APOBEC3G in HIV infected individuals and their progression to AIDS. A better understanding of the role that APOBEC3G plays in the innate immune response would help in the search of new therapeutic possibilities. This could be done by inhibiting the Vif-APOBEC3G interaction in order to increase the amount of active APOBEC3G in the cells or increasing the APOBEC3G concentration in the cells in some manner.
A novel experimental approach for studying exotic transitions in few-electron high-Z ions was developed. In this approach, few-electron ions with selectively produced single K-shell holes are used for the investigation of the transition modes that follow the decay of the excited ions. The feasibility of the developed approach was confirmed by an experimental study of the production of low-lying excited states in He-like uranium, produced by K-shell ionization of initially Li-like species. It was found that K-shell ionization is a very selective process that leads to the production of only two excited states, namely the 1s2s 21S0 and 1s2s 23S1. This high level of selectivity stays undisturbed by the rearrangement processes. These experimental findings can be explained using perturbation theory and an independent-particle model, and are a result of the very different impact parameter dependencies of K-shell ionization and L- intrashell excitation. The L-shell electron can be assumed to stay passive in the collision, whereas the K-shell electron is ionized. It was stressed that the current result might directly be applied to accurate studies of the two-photon decay in He-like ions. Up to now, the experimental challenge in conventional 2E1 experiments has been the photon-photon coincidence technique, which is required to separate the true 2E1 events from the x-ray background associated with single photon transitions. In contrast, by exploiting K-shell ionization, the spectral distribution of the two-photon decay could be obtained simply by a measurement of the photon emission, using only a single x-ray detector in coincidence with projectile ionization. One further particular advantage arises from the fact that the 1s2p 3P0 state is not populated, and does not contribute to the continuum distribution of the two-photon emission. At high Z, this state also undergoes a two-photon E1M1 decay, which would be indistinguishable from the 2E1 decay of the 1s2s 1S0. The first measurement of the two-photon energy distribution from the decay of 1s2s 1S0 level in He-like tin was performed by adopting the technique developed in this thesis. In this technique, excited He-like heavy ions were formed by K-shell ionization of initially Li-like species in collisions with a low-Z gas target, and x-ray spectra following the decay of the He-like ions were measured in coincidence with the up-charged tin ions. The observed intense production of the 2E1 transitions, and a very high level of selectivity, make this process particularly suited for the study of the two-photon continuum, and thus for a detailed investigation of the structure of high-Z He-like systems. The method allowed for a background-free measurement of the distribution of the two-photon decay (21S0 -> 11S0) in He-like tin. The measured distribution could also be discriminated from that of other He-like ions, and confirmed, for the first time, the fully relativistic calculations. In addition, the feasibility of the method was confirmed by studying another exotic transition, namely the two-electron one-photon transition (TEOP) in Li-like high-Z ions. An experimental investigation of the radiative decay modes of the 1s2s2 state in Li-like heavy ions has been started. In the first dedicated beam time at the ESR, selective population of this state via K-shell ionization of initially Be-like species was achieved. The x-rays produced in this process were measured by a multitude of x-ray detectors, each placed under different observation angles with respect to the ion beam direction. The spectra associated with projectile electron loss consist (in all cases) of one single x-ray transition, which was attributed to the TEOP decay to the 1s2 2p1/2 level, possibly contaminated by the M1 decay to the 1s22s. Thus it was proven that, by adopting the developed approach, one can indeed produce the desired initial state. This makes this method perfectly suited for studies of TEOP transitions in high-Z systems. An extension of this study, by the inclusion of an electron spectrometer, would also allow for measurements of the autoionization channel, which would provide complete information on the various decay modes of the 1s2s2 state.
The relation between reality and language, the instability of language as a signification system, the representation crisis, and the borders of interpretation are the controversial issues that have engaged not only philosophers, but also many authors, translators, and literary critics. Some philosophers like Derrida accuse Western thinking of being obsessed with binary oppositions. In Derrida's view, Western tradition resorts to external references as God, truth, origin, center and reason to stabilize the signification system. Since these concepts lack an internal sense and there is no transcendental signified that can fix these signifiers, language turns to an instable system by means of which no fixed meaning can be created. Many authors like Beckett, Stoppard, and Caryl Churchill also noticed this impossibility of language. While Derrida's deconstructive approach to this crisis has an epistemological nature, these playwrights present an aesthetic solution by turning the deconstructive potential of language against itself in text and performance. This dissertation aims at exploring their performing methods and dramatic texts to demonstrate how their delogocentric strategies work. By analyzing their plays, I will examine if their use of signifiers that have no references in reality, intentional misconceptions, disintegrated subjectivities, decentered narratives, and experimental performances can help them undermine the prevailing logocentrism of Western thought. The examination of the change in aesthetic strategies from Beckett, who belongs to earlier stages of post modernism, to Caryl Churchill, who should perform in a globalized world with increasing dominance of speed and information, is another aim of this research. In my view,Beckett's obsession with unspeakable, absurdity, and disintegration of subjectivity develops to Stoppard's language games, metadrama, and anti-representation and culminates in Churchill's anti-narrative texts and pluralistic performances. The monophony of Beckett's dramatic texts is replaced by the polyphony of Churchill's performances, which are a mixture of theater, dance and music. However, all explored dramatic texts in this dissertation have something in common: they are language games, which have no claim on a faithful representation of reality or transcendental truth.
In 1911 Eugen Bleuler (Bleuler, 1911) postulated that schizophrenia was a disorder resulting from inability to properly integrate mental processes. Around the same time, Carl Wernicke (Wernicke, 1894) proposed that psychosis might result from disruption of white matter tracts. Both of these statements can be considered early cornerstones of modern connectivity hypotheses developed towards the end of the twentieth century by such researchers as Karl Friston (1998) and Nancy Andreansen (1998). In the current work, the hypothesis that schizophrenia, rather than being a disorder or either anatomical or functional connectivity, is a disorder where both of these processes interact and influence the clinical presentation of patients, is examined. This is achieved through a detailed examination of a sample of chronic schizophrenia patients using a combination of functional and anatomical Magnetic Resonance Imaging techniques. The relationship of these measures to clinical symptoms is also explored. In the first study, anatomical connectivity at the whole-brain level is examined using Diffusion Tensor Imaging. The results of the study contribute to the previous literature on auditory hallucinations in schizophrenia and provide the first direct correlation between increased anatomical connectivity and increased severity of psychotic symptoms. The second study provides a thorough examination of the interhemispheric connectivity. This is achieved through a detailed examination of the corpus callosum using a combination of diffusivity and volumetric values. This is the first study to date where several anatomical methods are used in one sample. The results illustrate the importance of using different techniques to accurately characterize anatomical abnormalities observed in schizophrenia. In addition, contrary to previous research reports, the results of the current study imply that only specific sub-sections of the corpus callosum are affected by anatomical abnormalities. The pattern of these changes may influence clinical presentation of patients. Finally, functional connectivity at the whole-brain level is examined during resting-state using Independent Component Analysis. Similarly to the results of the anatomical examinations, it provides further supporting evidence that the pattern of disturbances observed in the current sample of schizophrenia patients examined herein reflects a combination of hypo- and hyperconnectivity. Moreover, the study further validates resting-state functional Magnetic Resonance Imaging as a reliable tool for examining functional abnormalities in schizophrenia.
This dissertation analyzes tax policy, corporations, and capital market effects. First, the Savings Directive, which has left a loophole by providing grandfathering for some securities, is examined. It can be shown that investors are not willing to pay a premium for bonds that are exempt from the withholding rate, so it may be concluded that the supply of existing loopholes is large enough to allow tax evaders to continue evasion at no additional cost. Second, tax neutrality towards alternative financing instruments for corporate investment is a ubiquitous demand in the political debate. However, the magnitude of possible efficiency costs of a departure from tax neutrality is hardly discussed. Against this background, this dissertation discusses the theory of capital structure and provides back-ofthe-envelope calculations of the possible efficiency cost of a tax distortion of the debt-equity decision. Third, the ex-dividend-day effect in relation to the Gennan tax reform of 2000/2001 is discussed. The abolishment of the imputation system allows reinvestigating the size of the exdividend- day effect. I find no structural break in the size of the German ex-dividend-day effect and no evidence of an ex-dividend-day price drop that exceeds the dividend paid. Fourth, an account of the quantitative development of tax legislation in post-war Germany is presented. It can be shown that the legislative output did not increase over the decades and is not affected by a split majority in the upper and lower houses. Finally, it turns out that an increasing fraction of this legislation is passed in December.