Refine
Document Type
- Article (19) (remove)
Has Fulltext
- yes (19) (remove)
Is part of the Bibliography
- no (19)
Keywords
- molecular phylogeny (19) (remove)
Previous phylogenetic analyses of the grass-specialist leafhopper tribe Chiasmini have resolved relationships among genera but have included few representatives of individual genera. Here the phylogeny of 20 Chinese species belonging to 8 chiasmine genera was investigated by combining DNA sequence data from two mitochondrial genes (COI, 16S) and two nuclear genes (H3, 28S). In both maximum likelihood (ML) and Bayesian inference (BI) analyses, relationships among genera were largely consistent with prior analyses, with most members of the tribe placed into two sister clades: (Exitianus + Nephotettix) and the remaining five sampled genera. To examine morphology-based species definitions in the taxonomically difficult genus Exitianus Ball, 1929, one mitochondrial gene (COI) and one nuclear gene (ITS2) were used to infer the phylogenetic relationships and status of two common and widespread species and compare the performance of different molecular species-delimitation methods. These analyses divide the included populations into two well-supported clades corresponding to current morphological species concepts but some inconsistencies occurred under the jMOTU, ABGD and bPTP methods depending on the which gene and analytical parameter values were selected. Considering the variable results yielded by methods employing single loci, the BPP method, which combines data from multiple loci, may be more reliable in Exitianus.
The taxa of the subgenus Turritus of Cochlostoma (Cochlostomatidae) are analysed based on molecular and morphological data. The phylogenetic trees, based on ribosomal (16S) and nuclear (H3) DNA, indicate that the currently accepted taxonomy should be revised. Based on our data, there are 37 species in Turritus of which 5 are new to science: Cochlostoma (Turritus) pallgergelyi sp. nov., C. (T. ) muranyii sp. nov., C. (T. ) hallgassi sp. nov., C. (T. ) kontschani sp. nov. and C. (T. ) lacazei sp. nov. Of these, we describe the shells and the female genitalia and summarize the distributional data. Some samples (or set of samples) will remain undetermined for lack of data and these are reported in the appendix.
The taxonomy of cyclostome bryozoans is founded on characters of the skeleton, but molecular sequence data have increasingly shown that established higher taxa are not monophyletic. Here we describe the skeletal morphology of a new species from Guadeloupe (French West Indies) with erect ramose colonies consisting of long, curved zooids that are typical of the suborder Cerioporina among living cyclostomes. However, molecular evidence from nuclear ribosomal RNA genes 18S and 28S places the new taxon in the suborder Rectangulata, where this colony-form has not been previously recorded. It nests firmly within the genus Disporella Gray, 1848, in a strongly supported clade that also includes Plagioecia patina (Lamarck, 1816) (Tubuliporina) and the sister taxa Doliocoitis cyanea Gordon & Taylor, 2001 (Rectangulata) and Favosipora rosea Gordon & Taylor, 2001 (Cerioporina). The short and robust branches of the new Guadeloupe cyclostome, here named Disporella guada Harmelin, Taylor & Waeschenbach sp. nov., are well adapted to life in shallow rocky sites exposed to severe wave action, which appear to be its exclusive habitat.
The following new taxa are described from the Philippines: Mioscarta nubisa Crispolon & Soulier-Perkins sp. nov., M. translucida Crispolon & Yap sp. nov. and Trigonoschema Crispolon & Soulier-Perkins gen. nov. with three new species: T. manoborum Crispolon & Soulier-Perkins sp. nov. (as type species), T. negrosensis Crispolon & Yap sp. nov and T. rubercella Crispolon &Guilbert sp. nov. Trigonoschema pallida (Lallemand, 1927) comb. nov. is transferred from Mioscarta Breddin, 1901. Descriptions of male genitalia are illustrated and keys to species of Philippine Mioscarta and Trigonoschema gen. nov. are provided. Although phylogenetic results confirm the monophyly of all genera and Trigonoschema being a distinct genus from Mioscarta, relationships between genera remain uncertain. A checklist of the genera and species of Cercopidae found in the Philippines is included.
The lichen-forming genus Pertusaria under its current circumscription is polyphyletic and its phylogenetic affiliations are uncertain. Here we study the species of the genera Pertusaria and Varicellaria which containlecanoric acid as major constituent, have disciform apothecia, strongly amyloid asci, non-amyloid hymenial gel, 1-2-spored asci, and 1- or 2-celled ascospores with thick, 1-layered walls. We infer phylogenetic relationships using maximum likelihood and Bayesian analyses based on four molecular loci (mtSSU, nuLSU rDNA, and the protein-coding, nuclear RPB1 and MCM7 genes). Our results show that the lecanoric acid-containing species form a well-supported, monophyletic group, which is only distantly related to Pertusaria s.str. The phylogenetic position of this clade is unclear, but placement in Pertusaria s.str. is rejected using alternative hypothesis testing. The circumscription of the genus Varicellaria is enlarged to also include species with non-septate ascospores. Seven species are accepted in the genus: Varicellaria culbersonii (Vězda) Schmitt & Lumbsch, comb. nov., Varicellaria hemisphaerica (Flörke) Schmitt & Lumbsch, comb. nov., Varicellaria kasandjeffii (Szatala) Schmitt & Lumbsch, comb. nov., Varicellaria lactea (L.) Schmitt & Lumbsch, comb. nov., Varicellaria philippina (Vain.) Schmitt & Lumbsch, comb. nov., Varicellaria rhodocarpa (Körb.) Th. Fr., and Varicellaria velata (Turner) Schmitt & Lumbsch, comb. nov. A key to the species of Varicellaria is provided.
Inocybe hopeae sp. nov. and first record of Pseudosperma keralense (Inocybaceae) from Thailand
(2023)
Based on genetic studies, supported further by morphological and ecological differences, we present a taxonomic novelty (Inocybe hopeae Raghoonundon & Raspé sp. nov.) and a new geographical record (Pseudosperma keralense) from forests of Northern Thailand. Inocybe hopeae is characterized by medium-sized basidiomes, brownish orange to brown pileus that is darker towards the margin, off-white to pale brown context, light brown to dark brown stipe with off-white basal mycelium and pale brown to grayish brown lamellae. A three-gene phylogeny (LSU, tef1, rpb2) coupled with macroscopic / microscopic descriptions and illustrations are provided confirming the species’ positions in their respective generic clades. Inocybe hopeae was sister to I. thailandica with strong support (BS = 100%, PP = 1.0). Our Thai collections of OR1629 had similar morphological characters and 100% identical sequences with the holotype of Pseudosperma keralense from India.
We describe a new species of Cyrtodactylus on the basis of two specimens collected from Ta Kou Nature Reserve, Binh Thuan Province, southern Vietnam. Cyrtodactylus chungi sp. nov. is distinguished from the remaining Indochinese bent-toed geckos by a combination of the following characters: relatively small body size (SVL up to 68.5 mm); a continuous neckband; 5 or 6 irregular transverse dorsal bands; 11 or 12 bands on original tail; keeled tubercles present on dorsum, posterior limbs and tail; 17 or 18 irregular dorsal tubercle rows; 30 or 31 ventral scale rows; ventrolateral skin folds indistinct; an angular series of seven precloacal pores in male and six pitted, enlarged precloacal scales in female, each series separated by a diastema of undifferentiated scales from 4–6 enlarged, poreless femoral scales; median subcaudals slightly enlarged; 17–20 subdigital lamellae under the fourth toe. Based on molecular analyses of the fragment of mitochondrial gene cytochrome c oxidase subunit I (COI), the new species is recovered as the sister taxon to Cyrtodactylus cattienensis s. str. with a genetic divergence of more than 9%. In phylogenetic analyses, the new species is recovered as a member of the Cyrtodactylus irregularis species group.
We describe a new species of Theloderma from northeastern Vietnam based on morphological differences and molecular divergence. Theloderma khoii sp. nov. is distinguishable from its congeners on the basis of a combination of the following characters: large size, SVL 52.1 mm in male, 59.4 mm in female; head length and width equal; vomerine teeth present; snout pointed and truncated, eye large, ED 4.7 mm in male, 5.6 mm in female, spinules on upper eyelid; tibiotarsal articulation reaches to the posterior border of the eye or the tip of the snout; dorsal skin very rough with large irregular gland ridges and warts, ventral surface of body granular; tips of all digits dilated but all considerably smaller than tympanum; dorsal surface mossy green or olive mottled with dark magenta. The distribution of the new species is unknown but probably extends into adjacent high elevation forested areas in Ha Giang Province, Vietnam and in Yunnan Province, China with an extent of occurrence of only < 1000 km2 and continuing decline in the quality of its habitat due to deforestation. Thus, we suggest the species should be considered Endangered following IUCN’s Red List categories.
The Cyrtodactylus irregularis group, originally considered to consist of only one taxon, has been split into 26 species. We herein present the distribution of all species within the group in Cambodia, Laos and Vietnam and describe two new species based on integrative analyses. Cyrtodactylus chumuensis sp. nov. is discovered from Dak Lak Province and distinguished from the remaining taxa by more than 11.86% genetic divergence and by the following distinct morphological characters: size medium (SVL 67.5 mm); enlarged femoral scales on each thigh 4–5, femoral pores 0–2 in males; precloacal pores 6–7 in males; ventral scale rows 43–45; lamellae under toe IV 17–21. Cyrtodactylus arndti sp. nov. is described from Binh Dinh Province and genetically differentiated from its congeners by a minimum of 11.42% and by the following characters: adult size medium (SVL 73.4–80.8 mm); enlarged femoral scales on each thigh 5–11; femoral pores 0–2 in males; 6 precloacal pores in males, females with 6 pitted precloacal pores; ventral scale rows 26–38; lamellae under toe IV 17–22; subcaudal scales transversely enlarged. Additionally, we highlight the potential cryptic diversity with the taxon currently regarded as C. pseudoquadrivirgatus and understudied areas in Vietnam where new species will likely be discovered.
A morphological and molecular review of the genus Goniurosaurus, including an identification key
(2021)
The genus Goniurosaurus (tiger geckos) currently consists of 23 species distributed in China, Japan and Vietnam. Several species complexes and recent discoveries of cryptic species pose challenges to the species identification, which is crucial to effectively implement the recent listing of the species from China and Vietnam in CITES Appendix II and the species from Japan in CITES Appendix III. Based on the results of our field work in northern Vietnam and data compiled from literature, we herein provide a taxonomic review of the genus Goniurosaurus. Our phylogenetic analyses showed that all recorded populations of tiger geckos from Vietnam, which were found to be monophyletic with low intra-specific genetic divergences, are assigned to one of the four species: G. catbaensis, G. huuliensis, G. lichtenfelderi or G. luii. Both genetic and morphological analyses confirm that the species from China and Vietnam can be split into three major groups. Based on the newly collected data, we provide an extended morphological description of the Vietnamese species. In addition, we provide an identification key for all Goniurosaurus species from China, Japan and Vietnam in order to assist authorities in the enforcement of the recent CITES listing.