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The technique of site-specific fluorescence labelling with Tetramethylrhodaminemaleimide (TMRM) in combination with two electrode voltage-clamp technique (TEVC), an approach that has been named voltage clamp fluorometry (VCF), has been used in this work to study the Na,K-ATPase. The TMRM dye has the ability to attach covalently to cysteine residues and it responds to changes in the hydrophobicity of its local environment. We exploited this property using a construct of the Na-pump in which the native, extracellularly accessible cysteines were removed and cysteine residues were introduced by site-directed mutagenesis in specific positions of the Na-pump. In this way it was possible to detect site-specific conformational rearrangements of the Na-pump in a time-resolved fashion within a native membrane environment. In particular this technique allows to resolve reactions with low electrogenicity that cannot be satisfactorily analyzed with purely electrophysiological techniques and to identify the conformations of the enzyme under specific ionic composition of the measuring buffers. We used VCF to study the influence that several cations like Na+, K+, NMG+, TEA+ and BTEA+ exert on the distribution of the Na,K-ATPase between several enzymatic intermediates and on some of the reactions related to cation transport. To this end we utilized the mutants N790C in the loop M5-M6 and the mutant E307C, T309C, L311C and E312C in the loop M3-M4. From the correspondence of the fluorescence changes with the activation and inhibition of pumping current, by K+ and ouabain respectively, and from the fact that in Na+/Na+ exchange conditions the voltage distribution of charge movement and fluorescence changes evoked by voltage jumps are in reasonable agreement we conclude that through the fluorescence signals measured from these mutants, we can indeed monitor conformational changes linked to transport activity of the enzyme. For the mutants N790 and L311, it was found that the Na+ dependence of the amplitude and kinetics of the fluorescence signal associated with the E1P-E2P transition is in agreement with the prediction of an access channel model describing the regulation of the access of extracellular Na+ to its binding site. In particular for the mutants E307 and T309 it was found that in Na+/Na+ exchange conditions, the conformational change tracked by the fluorescence was much slower than the charge relaxation at hyperpolarized potentials while the kinetics was very similar at depolarized potentials. This implies that at hyperpolarized potentials the conformational change connected to the E1P-E2P transition does not give a large contribution to the electrogenicity of the process which is also consistent with the access channel model. On the mutant N790C it was found that the external pH does not seem to have any effect on the E1P-E2P equilibrium even if it seems to modulate the fluorescence quantum yield of the dye. Fluorescence quenching experiments with iodide and D2O indicate that at hyperpolarized potentials the local environment of the mutant N790C, experiences a small change in the accessibility to water without major changes in the local electrostatic field ...
The Na+/proline transporter of E. Coli (PutP) is responsible for the uptake of proline which is subsequently used not only as a carbon and nitrogen source and a constituent of proteins but also as a particularly effective osmoprotectant. However, for a long time there was little known about the single steps in the reaction cycle of this transporter and only few details about its structure-function relationship are available. Aim of the present work was to achieve a deeper understanding about the kinetic properties of the Na+/proline transporter and to get insights into the structure-function relationship of the substrate binding. To answer these questions different techniques were used. By using the novel SSM technique combining the preparation of PutP proteoliposomes it was possible to demonstrate for the first time the electrogenic substrate binding to PutP transporter. Due to rapid solution exchange measurements on the SSM it was additionally possible to obtain time resolved information about the kinetic details of the cytoplasmic substrate binding sites which were not available by previous steady state and equilibrium binding measurements. Pre-steady-state charge translocation was observed after rapid addition of one or both of the cosubstrates Na+ and/or proline to the PutP-WT proteoliposomes adsorbed on the SSM. Thereby it was possible to link the observed electrical signals with the binding activity of PutP. The observed Na+ and/or proline induced charge displacement were assigned to an electrogenic Na+ and/or proline binding process at the cytoplasmic face of the enzyme with a rate constant of k > 50 s-1 proceeding the rate limiting step of the reaction cycle. Furthermore, based on the kinetic analysis of the electrical signals obtained from the measurements of PutP on SSM, the following characteristics of the substrates binding in PutP were deduced: (1) both Na+ and proline can bind individually to the transporter. Under physiological conditions, an ordered binding mechanism prevails; while at sufficiently high concentrations, each substrate can bind in the absence of the other; (2) substrate binding is electrogenic not only for Na+, but also for the uncharged cosubstrate proline. The charge displacement associated with Na+ binding and proline binding is of comparable size and independent of the presence of the respective cosubstrate. In addition, it was concluded that Na+ accesses its binding site through a high-field access channel resulting in a charge translocation, whereas the binding of the electroneutral proline induces a conformation alteration involving the displacement of charged amino acid residue(s) of the protein; (3) Na+ and proline binding sites interact cooperatively with each other by increasing the affinity and/or the speed of binding of the respective cosubstrate; (4) proline binding proceeds in a two step process: low affinity (~ 0.9 mM) electroneutral substrate binding followed by a nearly irreversible electrogenic conformational transition; (5) membrane impermeable PCMBS inhibits both Na+ and proline binding to the inside-out orientated PutP transporter, indicating that rather than selectively blocking a specific binding site, PCMBS probably locks the enzyme in an inactive state. The possible targets for this SH-reagent are cysteines 281 and 344 located close to the cytoplasmic surface of the protein. Beyond it, transient electrical currents of PutP were also observed on the BLM after rapid addition of proline in the presence of Na+. This was possible by combining the conventional BLM technique with high-speed flash-photolysis of caged-proline. Indeed the signals on the BLM indicate the detection of a different underlying reaction process in comparison to the data achieved by the SSM technique. This has paved the way for supplemental information about the reaction cycle since it was possible to assign the flash-photolysis BLM signals to the proline binding step followed by the internalization of Na+ and proline into the liposome. Thereby it was found, that the presence of Na+ is indispensable and the time constant for the process is ~ 63 ms. Moreover, structure-function information about the Na+ and proline binding sites of PutP was obtained by investigating the functionally important amino acid residues Asp55, Gly63 and Asp187 with site-directed mutagenesis and the combined SSM technique. One finding is that the mutated proteins PutP-D55C and PutP-G63C showed no activity on the SSM. Therefore, it can be assumed that either both Asp55 and Gly63 are crucial for the structure of PutP protein, or they are located at or close to the Na+ and proline binding sites. Furthermore, the results obtained from PutP-D187N and PutP-D187C mutants on SSM suggest that Asp187 of PutP is likely to be involved in the Na+ binding at the cytoplasmic side of the backward running carrier. Taken together the results of the present work have substantially broadened the known picture of the Na+/proline transporter PutP thereby several steps of the reaction cycle were elucidated, and moreover, valuable insights into the structure-function relationship of the transporter have become available.
Nucleotide-binding domains (NBDs), roughly 27 kDa in size, are conservative components of the large family of ABC (ATP-binding cassette) transporters, which includes importers, exporters, and receptors. NBDs or ABC-ATPases supply energy for the translocation of a vast variety of substrates across biological membranes. Despite their hydrophilic sequence, many NBDs tend to aggregate and precipitate in solution upon isolation from the complete transporter. The conditions stabilizing an extremely labile NBD component of the E.coli HlyA transporter, HlyB-NBD, were developed. As a result, the pure highly concentrated enzyme was protected from precipitation for months that allowed screening of the unlimited crystallization conditions in the presence of different substrates and performance of the reproducible functional assays. HlyB-NBD was characterized in regard to its uncoupled ATPase activity, oligomeric state, and stability in solution. Comparative analysis of protein stability and ATPase activity in various buffers suggested an inverse relationship between the two. Kinetic analysis of ATPase activity revealed ATP-induced protein dimerization. Gel-filtration experiments with the wild type protein and H662A-mutant of HlyB-NBD provided further evidence of protein dimerization in the presence of ATP. The crystal structures in post- and pre-hydrolysis nucleotide-bound states of HlyB-NBD were determined at 1.6Å and 2.5Å resolution, respectively. While the hydrolytically deficient H662A mutant of HlyB-NBD was crystallized as a stable dimer in the presence of ATP or ATP-Mg2+, with two nucleotide molecules sandwiched between the two monomers, the same protein was shown to be a monomer in the ADP-loaded state. The wild type protein failed to develop crystals with bound ATP, yet formed ADP-bound crystals identical to those of the H662A-mutant. The X-ray structures of HlyB-NBD in various states of the hydrolytic cycle and the functional studies of the enzyme have provided an opportunity to characterize enzyme-substrate complexes and protein-protein interactions between the NBD subunits in great detail. Comparison of the nucleotide-free, the ADP-, and the ATP-loaded states revealed oligomeric and conformational changes of the protein upon substrate binding and resulted in a molecular picture of the catalytic cycle. The correlated results of the structural and functional investigations of HlyB-NBD are discussed with relation to the mechanism of action of ABC transporters.
Prostaglandin E2 is the major prostaglandin involved in colorectal carcinogenesis. The biosynthesis of prostaglandin E2 is accomplished by several terminal prostaglandin E synthases through catalytical conversion of the cyclooxygenase product prostaglandin H2. Among the known terminal prostaglandin E synthases, microsomal prostaglandin E synthase type 1 and type 2 were found to be overexpressed in colorectal cancer, however the role and regulation of these enzymes in this tumor entity are yet not fully understood. Here we report that the cyclopentenone prostaglandins 15-deoxy-D12,14-prostaglandin J2 and prostaglandin A2, which have been shown to modulate cell growth and neoplasia, selectively down-regulate microsomal prostaglandin E synthase type 2 mRNA and protein expression in the human colorectal carcinoma cell lines Caco-2 and HCT 116. This effect appeared to be PPARgamma independent and was not found to require G-protein-coupled receptor activation. Instead, inhibition of microsomal prostaglandin E synthase type 2 by cyclopentenone prostaglandins may be mediated by covalent binding of the cyclopentenone ring to cysteine residues on signalling molecules or via a redox-dependent mechanism. Inhibition of microsomal prostaglandin E synthase type 2 was subsequently followed by decreased prostaglandin E synthase activity, which in turn contributed at least in part to the anti-proliferative action of cyclopentenone prostaglandins in HCT 116 cells. Collectively, these data unravel a novel mechanism for the growth-inhibitory effects of cyclopentenone prostaglandins and expose microsomal prostaglandin E synthase type 2 as a new potential target for pharmacological intervention in the treatment of colorectal cancer.
My graduate thesis is on the "Structural studies of membrane transport proteins". Transporters are membrane proteins that have multiple membrane-spanning a-helices. They are dynamic and diverse proteins, undergoing a large conformational change and transporting wide range of susbtrates. Based on their energy source they can be classified into primary and secondary transport systems. Primary transport systems are driven by the use of chemical (ATP) or light energy, while secondary transporters utilize ion gradients to transport substrates. I began my PhD dissertation on secondary transporters by two-dimensional crystallization and electron crystallographic analysis and recently my focus also has shifted towards 3D crystallization. The following projects constitute my PhD thesis: 1) 2D crystallization of MjNhaP1 and pH induced structural change: MjNhaP1, a Na+/H+ antiporter that is regulated by pH has been implicated in homeostasis of H+ and Na+ in Methanococcus jannaschii, a hyperthermophilic archaeon that grows optimally at 85°C. MjNhaP1 was cloned and expressed in E. coli. Two-dimensional crystals were obtained from purified protein at pH4. Electron cryo-microscopy yielded an 8Å projection map. The map of MjNhaP1 shows elongated densities in the centre of the dimer and a cluster of density peaks on either side of the dimer core, indicative of a bundle of 4-6 membrane-spanning helices. The effect of pH on the structure of MjNhaP1was studied in situ in 2D crystals revealing a major change in density within the helix bundle relative to the dimer interface. This change occurred at pH6 and above. The two conformations at low and high pH most likely represent the closed and open states of the antiporter, respectively. This is the first instance where a conformational change associated with the regulation of a secondary transporter appears to map structurally. Reconstruction of 3D map and high-resolution structure by x-ray crystallography would be necessary to understand the mechanism of ion transport and regulation by pH. 2) 2D crystallization of Proline transporter: Proline transporter (PutP) from E.coli belongs the sodium-solute symporter family that includes disease related sodium dependent glucose and iodide transporter in humans. Sodium and proline are co-transported with a stoichiometry of 1:1. Purified PutP was reconstituted to yield 2D crystals that were hexagonal in nature. The 2D crystals had tendency to stack indicating their willingness to form 3D crystals. A projection map of PutP from negatively stained crystals showed trimeric arrangement of protein. Other members of the SSF family have been shown to be monomers. My analysis of oligomeric state of PutP in detergent by blue native gel indicates a monomer in detergent solution. It is likely that PutP can function as a monomer but at higher concentration and in lipid bilayer it tends to form trimer. 3) Oligomeric state and crystallization of carnitine transporter from E.coli: E.coli carnitine transporter (CaiT) belongs to the BCCT (Betaine, Carnitine and Choline) superfamily that transports molecules with quaternary amine groups. CaiT is predicted to span the membrane 12 times and acts as a L-carnitine/g-butyrobetaine exchanger. Unlike other members in this transporter family, it does not require an ion gradient and does not respond to osmotic stress. Over-expression of the protein yielded ~2mg of protein/L of culture. The structure and oligomeric state of the protein were analyzed in detergent and lipid bilayers. Blue native gel electrophoresis indicated that CaiT was a trimer in detergent solution. Gel filtration and cross-linking studies further support this. Reconstitution of CaiT into lipid bilayers resulted in 2D crystals. Analysis of negatively stained 2D crystals confirmed that CaiT is a trimer in the membrane. Initial 3D crystallization trials have been successful and currently, the crystals diffract to 6Å and are being improved. 4) Monomeric porin OmpG: OmpG is a bacterial outer membrane b-barrel protein. It is monomeric and its size (33kDa) places it as a prime candidate for a structural solution, using the recently developed method of solid state NMR (work in collaboration with Prof.Hartmut Oskinat, FMP, Berlin). A long-term aim would be to study porins as templates for designing nanopores, for DNA sequencing and identification. I have expressed OmpG in inclusion bodies and refolded at an efficiency of >90% into a functional form using detergent. OmpG was then crystallized by 2D crystallization yielding an 8Å projection map whose structure was similar to native protein. In addition, these crystals were used for structure determination by solid state NMR. An initial spectrum of heavy isotopically labeled OmpG has allowed identification of specific amino acid residues including threonine and proline. Additionally, I obtained 3D crystals in detergent that diffract to 5.5Å and are being improved.
Experimente zum radiativen Elektroneneinfang (REC, Radiative Electron Capture), der Zeitumkehrung der Photoionisation, wie er in Stößen hochgeladener, relativistischer Schwerionen mit leichten Gasatomen auftritt, ermöglicht einen einzigartigen Zugang zum Studium der Photonen-Materie-Wechselwirkung im Bereich extrem starker Coulombfeldern. So ist die REC-Strahlung im relativistischen Bereich zum einen geprägt durch das Auftreten von höheren elektrischen und magnetischen Multipolordnungen und zum anderen durch starke Retardierungseffekte. In Folge dessen wurde der REC-Prozeß in den vergangen Jahren sehr detailliert untersucht, wobei sich die experimentelle und theoretische Forschung auf die Emissionscharakteristik der REC-Photonen konzentrierte, wie z.B. auf Untersuchungen von Winkelverteilungen und Linienprofilen. Mittlerweile kann der REC-Prozeß als ein - selbst für die schwersten Ionen - wohlverstandener Effekt angesehen werden. Allerdings entzog sich den Experimenten bislang eine zur Beschreibung der Photonenmission wesentlich Größe, näamlich die Polarisation der Strahlung. Die lineare Polarisation der REC-Strahlung, wie sie in Stößen zwischen leichten Atomen und den schwersten, hochgeladenen Ionen vorhergesagt wird, war der Gegenstand der vorliegende Arbeit, in der es erstmals gelang, die diese für den konkreten Fall des Einfangs in die K-Schale von nackten Uranionen nachzuweisen und im Detail zu untersuchen. Die hierzu notwendigen experimentellen Untersuchungen erfolgten am Speicherring ESR der GSI-Darmstadt für das Stoßsystem U92+ -> N2 und für Projektilenergien, die im Bereich zwischen 98 und 400 MeV/u lagen. Besonders hervorzuheben ist der Einsatz eines segmentierten Germaniumdetektors, der speziell für den Nachweis linear polarisierter Strahlung im Energiebereich oberhalb 100 keV entwickelte wurde. Die lineare Polarisation der Strahlung wurde hierbei durch eine Analyse der Comptonstreuung innerhalb des Detektors gewonnen. Die durch eine präzise Analyse der Comptonstreuverteilungen gewonnenen Daten zeigen eine ausgeprägte lineare Polarisierung der REC-Strahlung in der Streuebene, die zudem eine starke Abhängigkeit als Funktion der Stoßenergie und des Beobachtungwinkels aufweist. Der detaillierte Vergleich mit nicht-relativistischen und relativistischen Vorhersagen ermöglichte darüberhinaus den Nachweis für das Auftreten starker relativistischer Effekte, die sich allerdings depolarisierend auswirken. Das Experiment wurde am internen Target des ESR-Speicherrings durchgeführt, wobei der Photonennachweis mittels mehrerer Ge(i)-Detektoren erfolgte, die die Ionen-Target-Wechselwirkungszone unter Beobachtungswinkeln zwischen nahe Null und 150 Grad einsahen. Alle Photonendetektoren wurden in Koinizidenz mit einem Teilchendetektor betrieben, um so die volle Charakteristik des REC-Prozesses zu erfassen, also den Einfang eines Targetelektrons in die nackten Uranionen (U92+) unter Emission eines Photons. Für den Polarisationsnachweis entscheidend war der Einsatz eines Germanium-Pixel-Detektors, der abwechselnd unter den Winkeln von 60 und 90 Grad betrieben wurde. Dieser Detektor verfügt über eine 4x4 Pixelmatrix (Pixelgröße: 7x7 mm), wobei die elektronische Information jedes Pixels (Energiesignale und schnelle Zeitsignale) separat registriert und aufgezeichnet wurde. Hierdurch war es möglich Ereignisse, die koinzident in zwei Pixeln erfolgten, zu detektieren und zu analysieren. Dies ist die eigentliche Voraussetzung für den Nachweis der linearen Polarisation bei hohen Photonenenergien, bei dem die Abhängigkeit des differenziellen Wirkungsquerschnitts für Comptonstreuung von der linearen Polarisation der einfallenden Photonen ausgenutzt wird (siehe Klein-Nishina Formel Eq. 2.7). Der Nachweis der Comptonstreuung erfolgt hierbei durch die Detektion des Compton-Rückstoßelektrons (deltaE) und des gestreuten Comptonphotons (hw'), die jeweils separat, aber koinzident in zwei unterschiedlichen Segmenten des Detektors nachgewiesen werden. Hier sei betont, dass für Germanium bereits ab Photonenenergien von ca. 160 keV die Absorption der Strahlung durch den Compton-Effekt über die Photoabsorption dominiert und somit das Ausnutzen des Compton-Effekts prinzipiell eine sehr effektive Technik ist. Der Auswertung der Datenfkam wesentlich zugute, dass der Germanium-Detektor über eine im Vergleich zu Szintillations- oder Gaszählern gute Energieauflösung von ca. 1.8 keV bei 122 keV verfügt. Somit kann durch Bilden der Summenenergie hw = hw' + deltaE für koinzidente Ereignisse die Energie des einfallenden Photons (hw) rekonstruieren werden und als zwingende Bedingung dafür herangezogen werden, dass es sich bei dem Ereignis im Detektor um ein Compton-Event gehandelt hat. Für den Fall linearer Polarisation ist eine wesentliche Aussage der Klein-Nishina-Formel, dass die maximale Intensität für die Compton gestreuten Photonen senkrecht zur Polarisationsebene zu erwarten ist. Tatsächlich zeigen bereits die während des Experiments aufgenommenen Rohdaten für den Fall der untersuchten REC-Strahlung, die durch den Einfang in die K-Schale des Projektils entsteht, dass es sich hierbei um eine stark polarisierte Strahlung handelt, wobei eine erhöhte Intensität für Comptonstreuung senkrecht zur Stoßebene (für den REC-Prozeß definiert durch die Ionenstrahlachse und den Impuls des REC-Photons) festgestellt wurde (vgl. Fig. 7.3). Zur genauen qualitativen Analyse der Meßdaten wurden alle möglichen Pixelkombinationen der (4x4) Detektorgeometrie ausgewertet, wobei jedoch koinzidente Ereignisse benachbarter Segmente ausgeschlossen wurden, um den hier vorhandenenen Einfluß elektronischer Übersprecher zu eliminieren. Zudem erfolgte die Analyse der Daten unter Berücksichtigung verschiedenster Effekte, die einen Einfluß auf die Nachweiseffizienzen für die Compton gestreuten Photonen haben könnten. An prominenter Stelle ist hier die Korrektur zu nennen, die durch die Detektordicke von 1,5 cm und der Pixelgröße von 7x7 cm2 hervorgerufen wird. Zu betonen ist hier, dass für die Auswertung nur relative Effizienzen eine Rolle spielen und so der Einfluß systematischer Fehler, hervorgerufen durch Effizienzkorrekturen, stark reduziert werden konnte (für eine so gewonnene, vollständige Compton-Streuverteilung sei auf Abbildung 9.1 verwiesen, in der die Intensitätsverteilung für Compton-Streuung dargestellt ist). Es sei auch hervorgehoben, dass der Nachweis der Polarisation durch Messungen von vollständigen Compton-Intensitätverteilung im Detektor erfolgte, was das hier diskutierte Experiment wesentlich von konventionellen Polarisationsexperimenten für harte Röntgen- und gamma-Strahlung unterscheidet. Üblicherweise wird in diesen Experimenten die Comptonstreuung ausschließlich in der Reaktionsebene und senkrecht dazu nachgewiesen. Generell weisen die in der vorliegenden Arbeit gewonnen Compton-Streuverteilungen für den K-REC-Prozeß ein ausgeprägtes Maxium senkrecht zur Reaktionsebene auf und bestätigen somit den bereits aus den Rohdaten abgeleiteten Befund, dass die Polarisationsebene der KREC Strahlung in der Reaktionsebene des Stosses liegt. In der Tat kann dieser Befund für alle Energien und Beobachtungswinkel bestätigt werden, die in dem hier diskutierten Experiment verwendet wurden. Hier sei zudem darauf hingewiesen, dass es durch die Erfassung der vollständigen Compton-Streuverteilung möglich war, die Orientierung der Polarisationsebene in Bezug auf die Stoßebene mit hoher Präzision zu erfassen. So konnte z.B. bei der Stossenergie von 400 MeV/u und dem Winkel von 90 Grad, die Orientierung der Comptonstreuverteilung in Bezug auf die Stoßebene zu ph=90 Grad bestimmt werden. Dieser Befund könnte für die Planung zukünftiger Experimente zum Nachweis polarisierter Ionenstrahlen entscheidend sein, da eine Abweichung von der ph = 90 Grad Symmetrie nur durch das Vorhandensein polarisierter Teilchen erklärt werden kann. Dieser Effekt, der in neuesten theoretischen Behandlungen im Detail untersucht wurde, stellt gleichsam einen neuen Zugang zur Bestimmung des Polarisationsgrads der Projektile dar. Hierdurch wird die Stärke der hier angewandten Technik verdeutlicht, die auf dem Einsatz eines ortsempfindlichen Germanium-Pixel- Detektors beruht. Die Bestimmung des genauen Polarisationsgrades für die K-REC-Strahlung erfolgte durch eine X2-Anpassung der Klein-Nishina-Formel an die experimentellen Daten. Die hieraus resultierenden Daten zeigen für alle Strahlenergien und Beobachtungsgwinkel eine starke Polarisation von etwa 80%, wobei die experimentelle Unsicherheit im 10% Bereich liegt. Letztere ist im wesentlichen auf die statistische Genauigkeit zurückzuführen. Die Daten wurden zudem eingehend mit theoretischen Vorhersagen verglichen. Die Theorie stützt sich auf eine vollständige relativistische Beschreibung des REC-Prozesses unter Verwendung exakter Wellenfunktionen für das Kontinuum und den 1s Zustand in wasserstoffartigem Uran. Typischer weise mußten bei den Rechnungen sowohl elektrische wie auch magnetische Multipolterme bis hin zu L=20 verwendet werden, um Konvergenz zu erreichen. Der Vergleich zeigt eine hervorragende Übereinstimmung zwischen Experiment und Theorie. Zudem verdeutlicht der Vergleich mit der ebenfalls diskutierten Vorhersage der nicht-relativistischen Dipolnäherung die Bedeutung relativistischer Effekte (vor allem das Auftreten höherer elektrischer und magnetischer Multipole), die für die Emission der REC-Strahlung bei hohen, relativistischen Energien und hohem Z charakteristisch sind. Offensichtlich wirken sich diese Effekte stark depolarisierend aus. Dass in der Tat eine Zunahme der depolarisierenden Effekte mit einer Zunahme der Strahlenergie verbunden ist, wird auch durch die Daten dokumentiert, die für den Beobachtungswinkel von 60 Grad als Funktion des Projektilenergie untersucht wurden. Die in der vorliegenden Arbeit gewonnenen Resultate für die Polarisation der REC-Strahlung ebenso wie die neuartige Experimenttechnik, die hierbei zum Einsatz kam, lassen für die nahe Zukunft eine Serie von weiteren Polarisations-Experimenten erwarten. Hierbei könnte der REC-Strahlung und deren Polarisation als Mittel zur Diagnostik und zum Nachweis des Polarisationsgrades gespeicherter Ionenstrahlen eine Schlüsselrolle zukommen. Als Detektorsysteme werden hierzu zwei-dimensionale Germanium- und Silizium-Streifen-Detektoren zum Einsatz kommen bzw. Kombinationen aus zweidimensionalen Silizium- und Germanium-Detektoren, sogenannte Compton-Teleskope. Diese Compton-Polarimeter, die gegenwärtig für neue Experimentvorhaben am ESR-Speicherring entwickelt werden, verfügen über eine wesentlich verbesserte Ortsauflösung (z.B. 1x1 mm2) und somit über eine wesentlich gesteigerte Nachweiseffizienz für die Comptonstreuung (ein bis zwei Größenordnungen). Hierdurch sollte es möglich sein, den für Polarisationexerperimente zugänglichen Energiebereich wesentlich auszudehnen, sodass selbst die charakteristische Strahlung der Schwerionen (ca. 50 bis 100 keV) für solche Experimente zugänglich wird.
Group III presynaptic metabotropic glutamate receptors (mGluRs) play a central role in regulating presynaptic activity through G-protein effects on ion channels and signal transducing enzymes. Like all Class C G-protein coupled receptors, mGluR8 has an extended intracellular C-terminal domain (CTD) presumed to allow for modulation of downstream signaling. To elucidate the function and modulation of mGluR8, yeast two-hybrid screens of an adult rat brain cDNA library were performed with the CTDs of mGluR8a and 8b (mGluR8-C) as baits. Different components of the sumoylation cascade (ube2a, sumo-1, Pias1, Pias gamma and Pias xbeta) and some other proteins were identified as mGluR8 interacting proteins. Binding assays using recombinant GST-fusion proteins confirmed that Pias1 interacts not only with mGluR8-C, but all group III mGluR CTDs. Pias1 binding to mGluR8-C required a region N-terminally to a consensus sumoylation motif and was not affected by arginine substitution of the conserved lysine K882 within this motif. Co-transfection of fluorescently tagged mGluR8a-C, sumo-1 and enzymes of the sumoylation cascade into HEK 293 cells showed that mGluR8a-C can be sumoylated in cells. Arginine substitution of lysine K882 within the consensus sumoylation motif, but not of other conserved lysines within the CTD, abolished in vivo sumoylation. The results are consistent with post-translational sumoylation providing a novel mechanism of group III mGluR regulation.
In the classical Dirac equation with strong potentials, called overcritical, a bound state reaches the negative continuum. In QED the presence of a static overcritical external electric field leads to a charged vacuum and indicates spontaneous particle creation when the overcritical field is switched on. The goal of this work is to clarify whether this effect exists, i.e. if it can be uniquely defined and proved, in time-dependent physical processes. Starting from a fundamental level of the theory we check all mathematical and interpretational steps from the algebra of fields to the very effect. In the first, theoretical part of this thesis we introduce the mathematical formulation of the classical and quantized Dirac theory with their most important results. Using this language we define rigorously the notion of spontaneous particle creation in overcritical fields. First, we give a rigorous definition of resonances as poles of the resolvent or the Green's function and show how eigenvalues become resonances under Hamiltonian perturbations. In particular, we consider essential for overcritical potentials perturbation of eigenvalues at the edge of the continuous spectrum. Next, we gather various adiabatic theorems and discuss well-posedness of the scattering in the adiabatic limit. Then, we construct Fock space representations of the field algebra, study their equivalence and give a unitary implementer of all Bogoliubov transformations induced by unitary transformations of the one-particle Hilbert space as well as by the projector (or vacuum vector) changes as long as they lead to unitarily equivalent Fock representations. We implement in Fock space self-adjoint and unitary operators from the one-particle space, discussing the charge, energy, evolution and scattering operators. Then we introduce the notion of particles and several particle interpretations for time-dependent processes with a different Fock space at every instant of time. We study how the charge, energy and number of particles change in consequence of a change of representation or in implemented evolution or scattering processes, what is especially interesting in presence of overcritical potentials. Using this language we define rigorously the notion of spontaneous particle creation. Then we look for physical processes which show the effect of vacuum decay and spontaneous particle creation exclusively due to the overcriticality of the potential. We consider several processes with static as well as suddenly switched on (and off) static overcritical potentials and conclude that they are unsatisfactory for observation of the spontaneous particle creation. Next, we consider properties of general time-dependent scattering processes with continuous switch on (and off) of an overcritical potential and show that they also fail to produce stable signatures of the particle creation due to overcriticality. Further, we study and successfully define the spontaneous particle creation in adiabatic processes, where the spontaneous antiparticle is created as a result of a resonance (wave packet) decay in the negative continuum. Unfortunately, they lead to physically questionable pair production as the adiabatic limit is approached. Finally, we consider extension of these ideas to non-adiabatic processes involving overcritical potentials and argue that they are the best candidate for showing the spontaneous pair creation in physical processes. Demanding creation of the spontaneous antiparticle in the state corresponding to the overcritical resonance rather quick than slow processes should be considered, with a possibly long frozen overcritical period. In the second part of this thesis we concentrate on a class of spherically symmetric square well potentials with a time-dependent depth. First, we solve the Dirac equation and analyze the structure and behaviour of bound states and appearance of overcriticality. Then, by analytic continuation we find and discuss the behaviour of resonances in overcritical potentials. Next, we derive and solve numerically (introducing a non-uniform continuum discretization for a consistent treatment of narrow peaks) a system of differential equations (coupled channel equations) to calculate particle and antiparticle production spectra for various time-dependent processes including sudden, quick, slow switch on and off of a sub- and overcritical potentials. We discuss in detail how and under which conditions an overcritical resonance decays during the evolution giving rise to the spontaneous production of an antiparticle. We compare the antiparticle production spectrum with the shape of the resonance in the overcritical potential. We study processes, where the overcritical potentials are switched on at different speed and are possibly frozen in the overcritical phase. We prove, in agreement with conclusions of the theoretical part, that the peak (wave packet) in the negative continuum representing a dived bound state partially follows the moving resonance and partially decays at every stage of its evolution. This continuous decay is more intensive in slow processes, while in quick processes the wave packet more precisely follows the resonance. In the adiabatic limit, the whole decay occurs already at the edge of the continuum, resulting in production of antiparticles with vanishing momentum. In contrast, in quick switch on processes with delay in the overcritical phase, the spectrum of the created antiparticles agrees best with the shape of the resonance. Finally, we address the question how much information about the time-dependent potential can be reconstructed from the scattering data, represented by the particle production spectrum. We propose a simple approximation method (master equation) basing on an exponential, decoherent decay of time-dependent resonances for prediction of particle creation spectra and obtain a good agreement with the results of full numerical calculations. Additionally, we discuss various sources of errors introduced by the numerical discretization, find estimations for them and prove convergence of the numerical schemes.
Soluble guanylyl cyclase (sGC) is a cytosolic enzyme producing the intracellular messenger cyclic guanosine monophosphate (cGMP) on activation with nitric oxide (NO) which leads to the activation of GMP dependent protein kinases and to vasodilation. NO signaling may be affected by altered expression of sGC subunits, as has been shown in different pathological and physiological conditions and developmental stages. The molecular mechanisms underlying altered sGC expression in these and other conditions have not yet been revealed. Gene expression can also be regulated at the level of mRNA through alterations in translational efficiency and in mRNA stability. HuR (Human R) is a ubiquitously expressed member of the embryonic lethal abnormal vision (ELAV) family of RNA-binding proteins. Among other RNAs, there has been recent evidence that the expression of sGC is subject to post-transcriptional regulation by HuR. It has been shown that chronic hypertension induces changes in HuR expression and activity, which account for decreased sGC expression and activity in the aorta of hypertensive rats. This thesis should study was performed in an effort to provide some insight to the transcriptional and post-transcriptional regulation of sGC expression in a mammal, the rat. We investigated rat sGC alpha-1 transcriptional regulation in rat lung fibroblast (RLF-6) cells. The 3000bp 5' upstream region of the alpha-1 sGC gene was isolated and analyzed for promoter activity by using luciferase reporter constructs- Alpha3000 (with -2794 bp), Alpha1100 (-1092 bp), Alpha350 (-346 bp) and Alpha200 (-200 bp). The promoter activity was the highest in the 200bp construct (about 6-fold higher than Alpha3000) suggesting that this fragment contains all the crucial elements necessary to support basal transcription of the alpha-1 sGC gene. Analysis of the 200 bp of the 5’ UTR of the alpha-1 gene was performed using the MATINSPECTOR V2.2 software for putative transcription factors. The constructs containing the deleted sites for NFY and Sp1 showed a significant decrease in constitutive promoter activity by almost 80% and 60% respectively, implying that these transcription factors are crucial elements in the basal expression of the of sGC alpha-1 subunit. Treatment of RLF-6 cells with genistein 50 microM and mithramycinA 100 nM, known to inhibit the NFY and Sp1 binding to DNA respectively, reflected the same effects. Furthermore the cGMP content of the cells was significantly reduced by both inhibitors, almost completely by genistein, and by about 40 % by mithramycinA. Electrophoretic mobility-shift assay (EMSA) clearly showed the formation of multiple complexes with the biotinylated ODN (decoy oligodeoxynucleotide) probes for NFY and Sp1 when incubated with RLF-6 nuclear extract. A “supershift” observed in the presence of antibodies to the individual transcription factors confirmed that these factors were present in the shifted band, indeed. NFY and Sp1 are instrumental in several physiological and pathophysiological effects mediated by several growth factors in smooth muscle cells. Thus the regulation of the promoter, in response to serum, was also analysed. 10% foetal calf serum led to decreased alpha-1 sGC level as shown by western blots performed with rat aorta. Decreased sGC alpha-1 mRNA expression was observed in RLF-6 cells and cultured rat aortic smooth muscle cells incubated with FCS for 24 hours. This decrease was reflected in the promoter activity in RLF-6 cells using both Alpha3000 and Alpha200 constructs confirming that the regulation took place at promoter level. EMSA performed with nuclear extracts from FCS treated RLF-6 cells led to diminished binding to NFY, but to an enhanced binding to Sp1 site. We concluded that the factors Sp1 and NFY (the sites overlapping) compete for binding, and in the presence of FCS, it is Sp1 that binds stronger, and hence results in diminishing promoter activity. In order to delineate the post-transcriptional regulation of sGC alpha-1 subunit, studies were performed to demonstrate the regulation of expression of the mRNA stabilizing protein HuR. It has been observed that exposure of isolated rat aortic segments to the activator of adenylyl cyclase, forskolin, strongly reduced sGC alpha-1/beta-1 and HuR protein and mRNA expression in a time-dependent and actinomycin D-sensitive fashion. Transcription factor decoy approach proved that the cAMP-induced down-regulation of HuR is mediated by the activation of AP-1. It has been established that HuR stabilises the sGC alpha-1 and beta-1 mRNA. However the pathway underlying this regulation remains unknown. In order to identify the mechanism of this regulation, we looked for HuR interacting proteins employing the yeast two hybrid assay. The enzyme of the polyamine catabolic pathway spermidine/spermine N1-acetyltransferase (SSAT) was found to interact with the hinge region of HuR. This interaction was confirmed by performing immunoprecipitation and GST-pulldown experiments. A direct effect of these proteins on each other’s biological activity was not visible as tested through the SSAT activity assay and HuR gel shift. It might be possible that SSAT-mediated modulation of local polyamine concentrations enhances/reduces HuR activity and sGC expression to affect cell proliferation. In summary, this study represents an analysis of the rat sGC alpha-1 promoter regulation in rat fibroblast cells and identifies NFY and Sp1 as important factors in sGC alpha-1 expression. It also gives first evidence of sGC regulation at the transcriptional level in response to an external stimulus, and proposes the possible mechanism. It also identifies SSAT as a HuR interacting protein. These might have implications in the various pathophysiological conditions where sGC plays an important role.