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Preposed negation in Danish
(2009)
In Danish the base position of the negation and negated quantifier phrases is between the subject and the finite verb in embedded clauses. However, in embedded clauses introduced by a non-veridical complementizer such as hvis ('if') or om ('whether') the negation and negated quantifier phrases can also appear between the complementizer and the subject. This phenomenon is referred to as preposed negation. The paper investigates the structure and semantics of this construction. It is argued that preposed negation is no adjunction structure, but a special construction where the negation element is a sister of the complementizer and the filler of a filler-gap-structure. It is further argued that preposed negation is associated with negated verum-focus of a clause lacking an (aboutness-) topic. The negation of a verum predicate explains why preposed negation fails to license strong negative polarity items and to rule out positive ones. The lack of a topic explains why preposed negation is preferred with non-referential subjects and with weak readings of indefinite subjects and why preposed negation is incompatible with topic-binding particles.The final section presents an HPSG-analysis of preposed negation using Minimal Recursion Semantics (MRS).
Reduction in natural speech
(2009)
Natural (conversational) speech, compared to cannonical speech, is earmarked by the tremendous amount of variation that often leads to a massive change in pronunciation. Despite many attempts to explain and theorize the variability in conversational speech, its unique characteristics have not played a significant role in linguistic modeling. One of the reasons for variation in natural speech lies in a tendency of speakers to reduce speech, which may drastically alter the phonetic shape of words. Despite the massive loss of information due to reduction, listeners are often able to understand conversational speech even in the presence of background noise. This dissertation investigates two reduction processes, namely regressive place assimilation across word boundaries, and massive reduction and provides novel data from the analyses of speech corpora combined with experimental results from perception studies to reach a better understanding of how humans handle natural speech. The successes and failures of two models dealing with data from natural speech are presented: The FUL-model (Featurally Underspecified Lexicon, Lahiri & Reetz, 2002), and X-MOD (an episodic model, Johnson, 1997). Based on different assumptions, both models make different predictions for the two types of reduction processes under investigation. This dissertation explores the nature and dynamics of these processes in speech production and discusses its consequences for speech perception. More specifically, data from analyses of running speech are presented investigating the amount of reduction that occurs in naturally spoken German. Concerning production, the corpus analysis of regressive place assimilation reveals that it is not an obligatory process. At the same time, there emerges a clear asymmetry: With only very few exceptions, only [coronal] segments undergo assimilation, [labial] and [dorsal] segments usually do not. Furthermore, there seem to be cases of complete neutralization where the underlying Place of Articulation feature has undergone complete assimilation to the Place of Articulation feature of the upcoming segment. Phonetic analyses further underpin these findings. Concerning deletions and massive reductions, the results clearly indicate that phonological rules in the classical generative tradition are not able to explain the reduction patterns attested in conversational speech. Overall, the analyses of deletion and massive reduction in natural speech did not exhibit clear-cut patterns. For a more in-depth examination of reduction factors, the case of final /t/ deletion is examined by means of a new corpus constructed for this purpose. The analysis of this corpus indicates that although phonological context plays an important role on the deletion of segments (i.e. /t/), this arises in the form of tendencies, not absolute conditions. This is true for other deletion processes, too. Concerning speech perception, a crucial part for both models under investigation (X-MOD and FUL) is how listeners handle reduced speech. Five experiments investigate the way reduced speech is perceived by human listeners. Results from two experiments show that regressive place assimilations can be treated as instances of complete neutralizations by German listeners. Concerning massively reduced words, the outcome of transcription and priming experiments suggest that such words are not acceptable candidates of the intended lexical items for listeners in the absence of their proper phrasal context. Overall, the abstractionist FUL-model is found to be superior in explaining the data. While at first sight, X-MOD deals with the production data more readily, FUL provides a better fit for the perception results. Another important finding concerns the role of phonology and phonetics in general. The results presented in this dissertation make a strong case for models, such as FUL, where phonology and phonetics operate at different levels of the mental lexicon, rather than being integrated into one. The findings suggest that phonetic variation is not part of the representation in the mental lexicon.
Background Multidirectional interactions in social (or communication) networks can have a profound effect on mate choice behavior. For example, Poecilia mexicana males show weaker expression of mating preferences when being observed by an audience male. It was suggested that this behavior is an adaptation to reduce sperm competition risk, which arises because commonly preferred female phenotypes will receive attention also by surrounding males, and/or because the audience male can copy the focal male's mate choice. Do P. mexicana males indeed respond to perceived sperm competition risk? We gave males a choice between two females and repeated the tests under one of the following conditions: (1) during the 2nd part of the tests an empty transparent cylinder was presented (control); (2) an audience male inside the cylinder observed the focal male throughout the 2nd part, or (3) the audience male was presented only before the tests, but could not eavesdrop during the actual choice tests (non-specific sperm competition risk treatments); (4) the focal male could see a rival male sexually interacting with the previously preferred, or (5) with the non-preferred female before the 2nd part of the tests (specific sperm competition risk treatments). Results When comparing the strength of individual male preferences between the 1st and 2nd part of the tests (before and after presentation of an audience), male preferences declined slightly also during the control treatment (1). However, the decrease in strength of male preferences was more than two-fold stronger in audience treatment (2), i.e., with non-specific sperm competition risk including the possibility for visual eavesdropping by the audience male. No audience effect was found in treatments (3) and (5), but a weak effect was also seen when the focal male had seen the previously preferred female sexually interact with a rival male (treatment 4; specific sperm competition risk). Conclusions When comparing the two 'non-specific sperm competition risk' treatments (2 and 3), a very strong effect was found only when the audience male could actually observe the focal male during mate choice in treatment (2). This suggests that focal males indeed attempt to conceal their mating preferences in the visual presence of other males so as to avoid mate choice copying. When there is no potential for eavesdropping [treatment (3)], non-specific specific sperm competition risk seems to play a minor or no role. Congruent with studies on other poeciliid species, our results also show that P. mexicana males respond to perceived specific sperm competition risk, and tend to share their mating effort more equally among females when the resource value of their previously preferred mate decreases (after mating with a rival male). However, this effect is comparatively weak.
Poster presentation: Introduction We study the problem of object recognition invariant to transformations, such as translation, rotation and scale. A system is underdetermined if its degrees of freedom (number of possible transformations and potential objects) exceed the available information (image size). The regularization theory solves this problem by adding constraints [1]. It is unclear what constraints biological systems use. We suggest that rather than seeking constraints, an underdetermined system can make decisions based on available information by grouping its variables. We propose a dynamical system as a minimum system for invariant recognition to demonstrate this strategy. ...
Reciprocal t(9;22) ABL/BCR fusion proteins: leukemogenic potential and effects on B cell commitment
(2009)
Background: t(9;22) is a balanced translocation, and the chromosome 22 breakpoints (Philadelphia chromosome – Ph+) determine formation of different fusion genes that are associated with either Ph+ acute lymphatic leukemia (Ph+ ALL) or chronic myeloid leukemia (CML). The "minor" breakpoint in Ph+ ALL encodes p185BCR/ABL from der22 and p96ABL/BCR from der9. The "major" breakpoint in CML encodes p210BCR/ABL and p40ABL/BCR. Herein, we investigated the leukemogenic potential of the der9-associated p96ABL/BCR and p40ABL/BCR fusion proteins and their roles in the lineage commitment of hematopoietic stem cells in comparison to BCR/ABL. Methodology: All t(9;22) derived proteins were retrovirally expressed in murine hematopoietic stem cells (SL cells) and human umbilical cord blood cells (UCBC). Stem cell potential was determined by replating efficiency, colony forming - spleen and competitive repopulating assays. The leukemic potential of the ABL/BCR fusion proteins was assessed by in a transduction/transplantation model. Effects on the lineage commitment and differentiation were investigated by culturing the cells under conditions driving either myeloid or lymphoid commitment. Expression of key factors of the B-cell differentiation and components of the preB-cell receptor were determined by qRT-PCR. Principal Findings: Both p96ABL/BCR and p40ABL/BCR increased proliferation of early progenitors and the short term stem cell capacity of SL-cells and exhibited own leukemogenic potential. Interestingly, BCR/ABL gave origin exclusively to a myeloid phenotype independently from the culture conditions whereas p96ABL/BCR and to a minor extent p40ABL/BCR forced the B-cell commitment of SL-cells and UCBC. Conclusions/Significance: Our here presented data establish the reciprocal ABL/BCR fusion proteins as second oncogenes encoded by the t(9;22) in addition to BCR/ABL and suggest that ABL/BCR contribute to the determination of the leukemic phenotype through their influence on the lineage commitment.
The title compound, C16H14N4, features an aromatic ring with two 2,2´-dicyanopropyl residues in positions 1 and 3, which are located above and below the ring plane. The two residues differ in their conformation with respect to the aromatic ring: whereas one of the Cmethyl-C-Cmethylene-Caromatic torsion angles is gauche [68.93 (12)°], the other one is fully staggered [177.63 (9)°]. The crystal structure is stabilized by C-H...N hydrogen-bonding interactions. Key indicators: single-crystal X-ray study; T = 173 K; mean σ(C–C) = 0.002 Å; R factor = 0.037; wR factor = 0.101; data-to-parameter ratio = 15.0.
The transporter associated with antigen processing-like (TAPL) acts as a lysosomal ATP-dependent polypeptide transporter with broad length selectivity. To characterize in detail its substrate specificity, a procedure for solubilization, purification and functional reconstitution of human TAPL was developed. TAPL was expressed in Sf9 insect cells with the baculovirus expression system and solubilized from crude membranes. By intensive screening of detergents, the mild non-ionic detergents digitonin and dodecylmaltoside were found to be ideal for solubilization with respect to efficiency, long term stability, and functionality of TAPL. TAPL was isolated in a two-step procedure with a yield of 500 micro g/L cell culture and, subsequently, reconstituted into proteoliposomes. The KM(pep) for the peptide RRYCfKSTEL (f refers to fluorescence label) and KM(ATP) were determined to be 10.5 ± 2.3 micro M and 97.6 ± 27.5 micro M, respectively, which are in the same range as the Michaelis-Menten constants determined in the membranes. The peptide transport activity of the reconstituted TAPL strongly depends on the lipid composition. Interestingly, the E. coli lipids are prefered over other tested natural lipids extracts. Moreover, phosphatidylcholine, the most abundant phospholipid in eukaryotic cells influenced TAPL activity in a dose dependent manner. In addition, some negatively charged lipids like DOPA and DOPS increased peptide transport activity with preference for DOPS. However, DOPE or egg PG which are also negatively charged had no effect. It seems not only the charge but also the specific head group of phospholipids that has impact on the function of TAPL. With the help of combinatorial peptide libraries containing D-amino acid residues at defined positions as well as bulky fluorescein labeled peptides, the key positions of the peptides were localized to the N- and C-terminal residues with respect to peptide transport. The C-terminal position has the strongest selectivity since modification at this position shows strongest impact on peptide transport. Additionally, positions 2 and 3 of the peptide also have weak influence on peptide selectivity. Subsequently, the residue preferences at the key positions were systematically investigated by combinatorial peptide libraries with defined residues at certain positions. At both ends, TAPL favors positively charged, aromatic, or hydrophobic residues and disfavors negatively charged residues as well as asparagine and methionine. The residue preferences at the key positions are valid for peptide substrates with different length, indicating a general rule for TAPL selectivity. Besides specific interactions of both terminal residues, electrostatic interactions are important, since peptides with positive net charge are more efficiently transported than negatively charged ones. By size exclusion chromatography (SEC) and blue native PAGE, TAPL purified in the presence of digitonin or dodecylmaltoside had an apparent molecular weight of 200 kDa which is close to the theoretical molecular mass of the TAPL homodimer (172 kDa). The purified and reconstituted TAPL showed specific ATP hydrolysis activity which can be inhibited by orthovanadate. TAPL in proteoliposomes showed 6-fold higher ATP hydrolysis than digitonin solubilized protein, indicating the phospholipids impact on TAPL function. However, no peptide substrate stimulated ATPase activity was observed. For site-specific labeling of TAPL, eight cysteines in each half transporter were replaced by alanine or valine. The TAPL cys-less mutant showed the same peptide transport activity as TAPL wt. Based on the functional TAPL cys-less mutant, seven single cysteine mutants were introduced into strategic positions. All single cysteine mutants in the TMD did not influence peptide transport, whereas the mutant L701C, which is close to the conserved H-loop motif, displayed impaired transport. TAPL orthologs Haf-4 and Haf-9 from Caenorhabditis elegans possess around 40% sequence identities with TAPL and 50% with each other. Both proteins are putative half transporters and reported to be involved in the intestinal granule formation (Bauer, 2006; Kawai et al., 2009). To further understand the physiological functions of these two proteins, they were expressed in Sf9 insect cells. Haf-4 and Haf-9 showed weak but specific ATP- and peptide-dependent peptide transport activity for the given peptide RRYCfKSTEL. Therefore, it was proposed that the physiological roles for Haf-4 and Haf-9 might be related to their peptide transport activity. Besides forming functional homodimeric complex as estimated by the peptide transport activities, both half transporter could also form heteromers which was confirmed by coimmunoprecipitation. However, the heteromers showed decreased transport activity.
Trace elemental concentrations of bivalve shells content a wealthy of environmental and climatic information of the past, and therefore the studies of trace elemental distributions in bivalve shells gained increasing interest lately. However, after more than half century of research, most of the trace elemental variations are still not well understood and trace elemental proxies are far from being routinely applicable. This dissertation focuses on a better understanding of the trace elemental chemistry of Arctica islandica shells from Iceland, and paving the way for the application of the trace elemental proxies to reconstruct the environmental and climatic changes. Traits of trace elemental concentrations on A. islandica shells were explored and evaluated. Then based the geochemical traits of the shells, four non-environmental/climatic controlling is indentified. (1) Trace elemental concentrations of bivalve shells are effected by early diagenesis by the leach or exchange of elemental ions, especially in shell tip part, even with the protection of periostrucum; (2) The analytical methods also affect the results of trace elemental concentrations, especially for the element, such as Mg, which is highly enriched in organic matrices; (3) Shell organic matrices are found play a dominating role on the concentration of trace elements on A. islandica shells. Most trace elements only occurred in insoluble organic matrices (IOM), although others are only found in the carbonate fraction. IOM of A. islandica shells is significantly enriched in Mg, while Li and Na are more deplete in IOM, but enriched in shell carbonate. Ba is more or less even contented in IOM and shell carbonate. The concentrations of certain elements vary between primary layer and secondary layer; (4) The vital /physiological controlling on trace elemental distributions of bivalve shells is also confirmed. Six elemental (B, Na, Mg, Mn, Sr, and Ba) concentrations show significant correlation (exponential functions) with ontogenetic age and shell grow rates (logarithmic equations). It is worthy to remark that B, Mg, Sr and Ba concentrations are negatively correlated with shell growth rate, positive with ontogenetic age, while the concentrations of Na and Mn show the opposite trends. At last, all the controlling described above can be taken into account and corrected to extract the environmental and climatic signal by a kind of standardization. The derived six exponential functions of the high correlations between six trace elemental concentrations and ontogenetic year are applied to make the standardization of these element-Ca ratios. The gotten standardized indices are compared with the variations of environmental and climatic parameters in this region, and many correlations are found. Standardized indices of Sr/Ca ratios are strongly related to the sun spot number, autumn NAO, autumn Europe surface air temperature (SAT) and Arctic sea surface temperature anomaly (TA), and those of Mg/Ca ratios are strongly associated with Arctic TA, Europe SAT and Solar variation (irradiance). The variations of autumn Europe SAT demonstrated more similarity with standardized indices of B/Ca than other parameters. Except for the SAT index of Arctic, the standardized indices of Na/Ca showed no distinct relation to temperature. European precipitation and the Arctic sea level pressure index compared well the Na/Ca ratios of the shells, and so did the autumn NAO. Standardized indices of Mn/Ca were correlated with the number of hurricanes in the North Atlantic, Northern Europe SAT and sun spot number.
Energy and environment are two major concerns in the 21st century. At present, the energy required for the daily life still mainly relies on the traditional fossil fuel resources, but the caused air pollution problem and greenhouse effect have seriously threatened the sustainable development of mankind. Another adopted energy source which can provide a large fraction of electricity for the world is the nuclear fission reaction. However, the increasing high-radioactive spent nuclear fuels, which half-lives are usually >1 million years, are becoming the hidden perils to the earth. A great advance in accelerator physics and technology opens an opportunity to solve this dilemma between man and nature, because powerful accelerator-based neutron sources can play important roles for clean nuclear power production, for example: - The Accelerator-Driven System (ADS) can serve as an easy control of a sub-critical fission reactor so that the nuclear fuels will be burnt more completely and safely. - The EUROTRANS project launched by EU is investigating another application of the ADS technology to reduce the radiotoxicity and the volume of the existing nuclear waste greatly and quickly in a transmutation way. - The developing international IFMIF plant will be used to test and qualify reactor materials for future fusion power stations, which can produce much cleaner nuclear electricity more efficiently than the fission ones. Therefore, the R&D of high-power driver linacs (HPDL) is of a worldwide importance. As the proverb said, "everything is hard at the beginning", the front end is the most difficult part for realizing an HPDL machine. Based on the RFQ and H-type DTL structures, this dissertation is dedicated to study the beam dynamics in the presence of significantly strong space-charge effects while accelerating intense hardon beams in the low- and medium-beta-region. Besides the 5mA/30mA, 17MeV proton injector (RFQ+DTL) and the 125mA, 40MeV deuteron DTL of the above-mentioned EUROTRANS and IFMIF facilities, a 200mA, 700keV proton RFQ has been also intensively studied for a small-scale but ultra-intense neutron source FRANZ planned at Frankfurt University. The most remarkable properties of the FRANZ RFQ and the IFMIF DTL are the design beam intensities, 200mA and 125mA, which are the record values for the proton and deuteron linacs, respectively. Though the design intensities for the two development stages, XT-ADS (5mA) and EFIT (30mA), of the EUROTRANS injector are well within the capability of the modern RF linac technology, the special design concept for an easy upgrade from XT-ADS to EFIT brings unusual challenges to realize a linac layout which allows flexible operation with different beam intensities. To design the 200mA FRANZ RFQ and the two-intensity EUROTRANS RFQ, the classic LANL (Los Alamos National Laboratory) Four-Section Procedure, which was developed by neglecting the space-charge forces, is not sufficient anymore. Abandoning the unreasonable constant- B (constant-transverse-focusing-strength) law and the resulting inefficient evolution manners of dynamics parameters adopted by the LANL method, a new design approach so-called "BABBLE", which can provide a "Balanced and Accelerated Beam Bunching at Low Energy", has been developed for intense beams. Being consistent with the beam-development process including space-charge effects, the main features of the "BABBLE" strategy (see Pages 55-58) are: 1) At the entrance, the synchronous phase is kept at = phi s = -90° while a gradual increase in the electrode modulation is started so that the input beam can firstly get a symmetrical and soft bunching within a full-360° phase acceptance. 2) In the following main bunching section, B is increasing to balance the stronger and stronger transverse defocusing effects induced by the decreasing bunch size so that the bunching speed can be fast and safely increased. 3) When the real acceleration starts, the quickly increased beam velocity will naturally weaken the transverse defocusing effects, so B is accordingly falling down to avoid longitudinal emittance growths and to allow larger bore apertures. Taking advantage of the gentle initial bunching and the accelerated main bunching under balanced forces enabled by the "BABBLE" strategy, a 2m-long RFQ with beam transmission in excess of 98% and low emittance growths has been designed for FRANZ, and a 4.3m-long RFQ with almost no beam losses and flat emittance evolutions at both 5mA and 30mA has been designed for EUROTRANS. All design results have proven that the "BABBLE" strategy is a general design approach leading to an efficient and robust RFQ with good beam quality in a wide intensity-range from 0mA to 200mA (even higher). To design the IFMIF DTL and the injector DTL part of the EUROTRANS driver linac, which have been foreseen as the first real applications of the novel superconducting CH-DTL structure, intensive attempts have been made to fulfill the design goals under the new conditions, e.g. long drift spaces, SC transverse focusing elements and high accelerating gradients. For the IFMIF DTL, the preliminary IAP design has been considerably improved with respect to the linac layout as well as the beam dynamics. By reserving sufficient drift spaces for the cryosystem, diagnostic devices, tuner and steerer, introducing SC solenoid lenses and adjusting the Linac Design for Intense Hadron Beams accelerating gradients and accordingly other configurations of the cavities (see Pages 78-80), a more realistic, reliable and efficient linac system has been designed. On the other hand, the specifications and positions of the transverse focusing elements (see Pages 81-82) as well as the phase- and energy-differences between the bunch-center particle and the synchronous particle at the beginning of the phi s=0° sections have been totally redesigned (see Pages 83-84) resulting in good beam performances in both radial and longitudinal planes. For the EUROTRANS injector DTL, in addition to the above-mentioned procedures, extra optimization concepts to coordinate the beam dynamics between two intensities, such as employing short adjustable rebunching cavities with phi s = -90° (see Page 116), have been applied. ...
Forewarned is forearmed
(2009)