Refine
Year of publication
- 2004 (43) (remove)
Document Type
- Doctoral Thesis (43) (remove)
Language
- English (43) (remove)
Has Fulltext
- yes (43)
Is part of the Bibliography
- no (43)
Keywords
- Aktive Zone (1)
- Albaner See (1)
- Altern (1)
- Alzheimer (1)
- Alzheimer-Krankheit (1)
- Amyloid <beta-> (1)
- Apolipoprotein E (1)
- Arbeitsmarkt (1)
- Arbeitsmarktforschung (1)
- Arbeitsmarktpolitik (1)
Institute
- Biochemie und Chemie (15)
- Physik (9)
- Biowissenschaften (6)
- Pharmazie (4)
- Biochemie, Chemie und Pharmazie (2)
- Geowissenschaften (2)
- Erziehungswissenschaften (1)
- Georg-Speyer-Haus (1)
- Mathematik (1)
- Medizin (1)
Cytochrome P450 (CYP) enzymes oxidize, peroxidize and/or reduce cholesterol, vitamins, steroids, xenobiotics and numerous pharmacological substances in an oxygen- and NADPHdependent manner. Since many CYP isozymes are also capable of metabolizing arachidonic acid to biologically active products, CYP enzymes are often described as the third pathway of arachidonic acid metabolism i.e., in addition to cyclooxygenases and lipoxygenases. CYP enzymes are predominantly expressed in the liver while others, such as members of the CYP 2J, CYP 2C and CYP 4A subfamilies, can be detected in extrahepatic tissues, particularly in the cardiovascular system. Recent data suggest that a CYP 2C enzyme(s) expressed in coronary artery endothelial cells generate epoxyeicosatrienoic acids (5,6-; 8,9-; 11,12- and 14,15-EET) which contribute to the acute control of vascular tone and the longterm regulation of vascular homeostasis.
The expression of CYP 2C in coronary artery endothelial cells is regulated by a number of stimuli, such as cyclic stretch and fluid shear stress as well as by the corticosteroid cortisol and a number of CYP substrates (nifedipine, cerivastatin and -naphthoflavone). However, the signalling pathways and the transcription factors involved in regulating the expression of the gene are unknown.
Since most of the CYP 2C enzymes are transcriptionally regulated, we were interested in identifying the CYP 2C isoform(s) expressed in porcine coronary artery endothelial cells (PCAEC) as well as determining its/their promoter sequence(s). The overall goal was to study the involvement of different transcription factor binding elements in the regulation of the CYP 2C gene(s). Porcine coronary arteries were used given the possibility of analysing the results obtained at the cellular level with alterations in vascular function. Comparison of the porcine CYP 2C and the human CYP 2C8 and 2C9 promoters was also a major goal of this study.
To identify the relevant porcine CYP 2C isoform nested RT-PCR was performed using total RNA from porcine coronary artery endothelial cells. Comparison of the sequence of the product of this reaction with the NCBI database suggested that the CYP 2C expressed in PCAEC was approximately 85% homologous with the human CYP 2C9 enzyme. To obtain the full length CYP 2C isoform 5´ rapid amplification of cDNA end (5´ RACE) was performed using a downstream reverse gene specific primer which is conserved in all of the porcine CYP 2C isoforms. The intention behind using such a primer was to amplify all the possible CYP cDNAs expressed in PCAEC. With the 5´ RACE technology it was possible not only to identify the exact isoform (CYP 2C34) expressed in PCAEC, but it was also possible to amplify 550 bp of the 5´ upstream region. This result was authenticated by comparing the protein/nucleotide sequence with other human CYP 2C genes such as CYP 2C8 and CYP 2C9 as well as different porcine CYP 2C genes (CYP 2C34, CYP 2C49). Multiple protein/nucleotide sequence alignment revealed approximately 85-90% sequence identity. An exon1-2 specific radio-labelled probe of the CYP 2C34 gene was then used to screen a porcine genomic library for positive genomic clones containing the promoter region of the CYP 2C34 gene.
For the isolation of 5´ flanking region of CYP 2C34 gene a PCR-based directional genome walking strategy was used in which the positive porcine genomic BAC clones were taken as a DNA template. Four arbitrarily designed universal walking primers and a gene-specific primer derived from the CYP 2C34 gene sequence were employed and led to the identification and isolation of 1.4 kb of the 5´ flanking region.
The 1.4 kb 5´ flanking region of CYP 2C34 gene contains multiple transcription factor binding sites including glucocorticoid-responsive element (GRE), hypoxia-responsive element (HRE), CAAT-enhancer binding protein (C/EBP), stress responsive element (STRE) consensus sequences. CYP 2C34 promoter constructs were generated and reporter gene activity (luciferase) activity was compared with that of a promoterless vector (pGL3-Basic) at first in HEK cells and then in PCAEC. After using cortisol as a positive control to demonstrate that the promoter constructs generated were functional we determined the effects of physiologically relevant stimuli i.e., hypoxia and cyclic stretch. Additional experiments with zinc sulphate were performed in a preliminary analysis of the role of Zn2+ inducible transcription factors and might be cooperative heterodimerization formation with these transcription factor with C/EBP in the regulation of CYP 2C34 expression. With all these stimuli, reporter gene activity of CYP 2C34 promoter was significantly (3-8 fold) increased over values obtained in unstimulated cells.
Analysis of the regions that are essential for the induction of promoter activity in response to the different stimuli of interest have to be performed in combination with gel shift assays, siRNA experiments as well as site-directed mutagenesis experiments. Comparison of the regulation of the CYP 2C34 gene and correlation with changes in vascular function (in isolated porcine coronary arteries) should deliver information relevant to the regulation of the CYP 2C enzyme expressed in human coronary artery endothelial cells. The recent demonstration of a clinically relevant role for CYP 2C9 in coronary heart disease underlines the importance of such a study.
Life of Varroa destructor, Anderson and Trueman, an ectoparasitic mite of honeybees, is divided into a reproductive phase in the bee brood and a phoretic phase during which the mite is attached to the adult bee. Phoretic mites leave the colony with workers involved in foraging tasks. Little information is available on the mortality of mites outside the colony. Mites may or not return to the colony as a result of death of the infested foragers, host change by drifting of foragers, or removal of mites outside the colony. That mites do not return to the colony was indicated by substantially higher infestation of outflying workers compared to the infestation of returning workers (Kutschker, 1999). The main objective of the study was to provide information whether V. destructor influences flight behaviour of foragers and consequently returning frequency of foragers to the colony. I first repeated the experiment of Kutschker (1999) examining the infestation of outflying and returning workers. Further, I registered flight duration of foragers using a video method. In this experiment I compared also the infestation and flight duration of bees of different genetic origin, Carnica from Oberursel and bees from Primorsky region. I investigated returning time of workers, returning frequency until evening, drifting to other colonies and orientation toward the nest entrance in the experiments in which workers were released in close vicinity of the colony. At last, I measured the loss of foragers in relation to colony infestation using a Bee Scan. Results from this study, listed below, showed considerable influence of V. destructor on flight behavior of foragers translating into loss of mites. Loss of mites with foragers add substantial component to mite mortality and was underestimated in previous studies. Such loss might be viewed as a mechanism of resistance against V. destructor. a) The mean infestation of outflying workers (0.019±0.018) was twice as the mean infestation of returning workers (0.009±0.018). The difference in the infestation between outflying and returning workers was more marked in highly infested colonies. b) Investigation of individually tagged workers by use of a two camera video recording device showed significantly higher infestation of outflying workers compared to returning workers. Mites were lost by the non returning of infested foragers (22%) and by loss of mites from foragers that returned to the colony without the mite (20%). A small portion of mites (1.8%) was gained. Loss of mites significantly exceeded mite gain. c) The flight duration of infested workers determined by using the same two camera video system was significantly higher in infested compared to uninfested workers of the same age that flew closest at time. The median flight duration of infested workers was 1.7 higher (214s) than the median duration of unifested workers (128s). d) Infested workers took 2.3 times longer to return to the colony than uninfested workers of the same age when released from the same locations, closest at time. The returning time increased with the distance of release. In a group of bees released simultaneously the infestation was higher in bees returning later and in those that did not return in the observation period of 15 min. e) Released workers did not return to the colony 1.5 more frequently than uninfested workers in evening. The difference in returning was significant for locations of 20 and 50m from the colony. No difference in returning between infested and uninfested workers were observed for the most distant location of 400m. f) No significant difference was found in returning time and/or in the returning frequency until evening between workers artificially infested overnight and naturally infested workers. Artificially infested workers returned later and less frequently than a control group indicating rapid influence of V. destructor on flight behavior of foragers. g) The orientation ability of infested workers toward the nest entrance was impaired. Infested workers compared to uninfested workers twice as often approached a dummy entrance before finding the nest entrance. h) No significant differences were found in drifting between infested and uninfested workers. Drifting in the neighboring nucleus colony occurred in about 1% occasions after release of marked workers. Similarly, more infested, but not significantly more infested workers (2.6%) entered a different colored hive than the same colored hive (1.9%). However, the number of drifting bees were to low to make results conclusive. i) The comparison between Carnica and Primorsky workers revealed higher infestation in Carnica compared to Primorsky. Further, Primorsky workers lost more mites during foraging due to mite loss from foragers and non returning of infested workers. No significant differences in flight duration were observed between the two bee stocks. j) Loss of foragers, as determined by the Bee Scan counts of outflying and returning foragers, and the infestation of outflying bees increased significantly over a period of 70 days. A colony with 7.7. higher infestation of outflying foragers lost 2.2. time more bees per flight per day compared to a low infested colony. k) The estimates of mite loss with foragers from mite population per day up to 3.1% exceeds approximately mite mortality of 1% within the colony as represented by counting dead mites on bottom board inserts.
In the present study possible sources and pathways of the gasoline additive methyl tertiary-butyl ether (MTBE) in the aquatic environment in Germany were investigated. The objective of the present study was to clarify some of the questions raised by a previous study on the MTBE situation in Germany. In the USA and Europe 12 million t and 3 million t of MTBE, respectively, are used as gasoline additive. The detection of MTBE in the aquatic environment and the potential risk for drinking water resources led to a phase-out of MTBE as gasoline additive in single states of the USA. Meanwhile there is also an ongoing discussion about the substitution of MTBE in Europe and Germany. The annual usage of MTBE in Germany is about 600,000 t. However, compared to the USA, significant less data exists on the occurrence of MTBE in the aquatic environment in Europe. Because of its physico-chemical properties, MTBE readily vaporizes from gasoline, is water soluble, adsorbs only weakly to the underground matrix and is largely persistent to biological degradation. The toxicity of MTBE remains to be completely investigated, but MTBE in drinking water has low taste- and odor thresholds of 20-40 microgram/L. The present study was conducted by collecting water samples and analyzing them for their MTBE concentrations through a combination of headspace-solid phase microextraction (HS-SPME) and gas chromatography-mass spectrometry (GC-MS). The detection limit was 10 ng/L. The method was successfully tested in the framework of an interlaboratory study and showed recoveries of reference values of 89% (74 ng/L) and 104% (256 ng/L). The relative standard deviations were 12% and 6%. The investigation of 83 water samples from 50 community water systems (CWSs) in Germany revealed a detection frequency of 40% and a concentration range of 17-712 ng/L. The detection of MTBE in the drinking water samples could be explained by a groundwater pollution and the pathway river - riverbank filtration - waterworks. Rivers are important drinking water sources. MTBE is emitted into rivers through a variety of sources. In the present study, potential point sources were investigated, i.e. MTBE production sites/refineries/tank farms and groundwater pollutions. For this purpose, the spatial distribution of MTBE in three German rivers with the named potential emission sources located close to the rivers was investigated by analyzing 49 corresponding river water samples. The influence of the potential emission sources groundwater pollution and refinery/tank farm was successfully demonstrated in certain parts of the River Saale and the River Rhine. Increasing MTBE concentrations from 24 ng/L to 379 ng/L and from 73 ng/L to 5 microgram/L, respectively, could be observed in the parts investigated in these two rivers. The identification of such emission sources is important for future modeling. Further sources of MTBE emission into surface water are industrial (non-petrochemical) and municipal sewage plant effluents. In the present study long-term monitoring of water from the River Main (n=67 samples), precipitation (n=89) and industrial (n=34) and municipal sewage plant effluents (n=66) was conducted. The comparison of the data sets revealed that maximum MTBE concentrations in the River Main of up to 1 microgram/L were most possibly due to single industrial effluents with MTBE concentrations of up to 28 microgram/L (measured in this study). The average MTBE content of 66 ng/L in the River Main most probably originated from municipal sewage plant effluents and further industrial effluents. Background concentrations of <30 ng/L could be related to the direct atmospheric input via precipitation. A certain aspect of the atmospheric MTBE input is represented by the input of MTBE into river water or groundwater through snow. In the present study 43 snow samples from 13 different locations were analyzed for their MTBE content. MTBE could be detected in 65% of the urban and rural samples. The concentrations ranged from 11-613 ng/L and were higher than the concentrations in rainwater samples formerly analyzed. Furthermore, a temperature dependency and wash-out effects could be observed. The atmospheric input of MTBE was in part also visible in the analyzed groundwater samples (n=170). The detection frequencies in non-urban and urban wells were 24% and 63%, respectively. The median concentrations were 177 ng/L and 57 ng/L. In wells located in the vicinity of sites with gasoline contaminated groundwater, MTBE concentrations of up to 42 mg/L could be observed. The MTBE emission sources and the different pathways of MTBE in the aquatic environment demonstrated in the present study and other works raise the question whether the use of MTBE in a bulk product like gasoline should be continued in the future. Currently, possible substitutes like ethyl tertiary-butyl ether (ETBE) or ethanol are being discussed.
Die vorliegende Arbeit soll einen Beitrag zur Erforschung der Verarbeitungsmechanismen des Gehirns leisten. Die Erregung des komplexen Systems "Hirn" liefert Antworten, deren Analyse zu einem besseren Verständnis dieser Informationsverarbeitung führt. Zu diesem Zweck wurde das Gehirn mit unterschiedlichen visuellen Stimuli angeregt und die hirnelektrischen Signale gemessen, die von Nervenzellgruppen (Multiunits) im visuellen Kortex der Katze ausgesandt wurden.Die verwendeten Stimuli waren ein Streifenmuster sowie eine Zufallspunktverteilung, deren Kohärenz beliebig geändert werden konnte. Darüber hinaus wurden die Antworten auf eine Vielzahl von Stimuli analysiert, die nur aufgrund des Bewegungskontrastes zwischen punktdefiniertem Objekt und Hintergrund zu erkennen sind (Shape-from-Motion- (SFM-) Stimuli). Die aufgenommenen Daten wurden mit Hilfe einer umfangreichen Signalanalyse untersucht. So wurden in Abhängigkeit von der Stimulusbedingung die Anzahl der Nervenimpulse pro Zeiteinheit (Feuerraten), Synchronisation, Frequenzverteilung sowie Kopplung von Aktionspotenzialen und LFPDaten analysiert. Die Experimente im ersten Teil dieser Arbeit untersuchten den Einfluss von Kohärenz auf die Verarbeitung von Bewegungsinformation im primären visuellen Areal (A17) und im posteromedialen lateralen suprasylvischen Sulcus (Area PMLS) der Katze. Es konnte gezeigt werden, dass Multiunits in A17 und PMLS sowohl auf Streifenmuster als auch auf Zufallspunktverteilungen antworten und dass die Stärke der Antwort als eine Funktion der Stimulusrichtung variiert. Die Vorzugsrichtung ist in beiden Arealen weitgehend unabhängig von der Art des verwendeten Stimulus, was darauf hindeutet, dass die Stimulusrichtung für Streifenmuster und Zufallspunktmuster in diesen Arealen durch einen einheitlichen Mechanismus bestimmt wird. Bei einer Abnahme der Stimuluskohärenz zeigen die Multiunits eine Abnahme der Feuerrate, wobei im Vergleich zu PMLS in A17 eine stärkere Abnahme der Kohärenz nötig ist, um die gleiche Abnahme der Feuerrate zu erreichen. Dieses Ergebnis konnte durch die unterschiedlichen Größen der rezeptiven Felder der beiden Areale erklärt werden und ist ein weiterer Hinweis darauf, dass eine wichtige Funktion von PMLS in der Analyse von Bewegung und räumlich verteilter Information liegt. Da beide Areale keine signifikante Änderungen der Feuerrate bei Inkohärenzniveaus von mehr als 50% zeigten, scheinen sie nicht in der Lage zu sein, die Bewegungsrichtung eines inkohärenten Zufallspunktmusters nahe der psychophysischen Detektionsschwelle von 95% auf der Basis von Feuerraten zu erkennen. Die Korrelation der Aktionspotenziale unterschiedlicher Multiunits zeigte bereits bei einer geringen Abnahme der Stimuluskohärenz eine monotone Verbreiterung des zentralen Maximums in den Korrelogrammen beider Areale. Die Stärke der Synchronisation hingegen war kaum beeinflusst. Darüberhinaus kam es zu einer Verschiebung der Leistung im lokalen Feldpotential (LFP) von hohen hin zu niedrigen Frequenzbereichen. Diese Verschiebung wurde auch für die Kopplung zwischen LFP und Akvi tionspotenzialen nachgewiesen. Diese Resultate unterstützen die Theorie, dass präzise Synchronisation und hochfrequente Oszillationen ein Mechanismus für die Bindung kohärenter Objekte sind. Sie zeigen darüber hinaus, dass Synchronisation auch nicht kohärente Stimuli binden kann und dass die Verschiebung im LFP hin zu niedrigeren Frequenzen wichtig für die Integration verteilter Information über einen größeren visuellen Raum sein kann. Da bei hohen Inkohärenzniveaus keine präzise Synchronisation mehr nachgewiesen werden konnte, kann jedoch auch die Synchronisation nicht als alleiniger Mechanismus zum Erkennen einer Bewegungsrichtung eines inkohärenten Zufallspunktmusters herangezogen werden. In den Experimenten im zweiten Teil dieser Arbeit wurde untersucht, wie das Gehirn SFM-Stimuli verarbeitet. Die Auswertungen der Feuerraten haben gezeigt, dass Multiunits in PMLS sowohl auf helligkeitsdefinierte Kontrastbalken als auch auf SFM-Balken reagieren. Die Stärke der Antwort hängt von der Kombination von Stimulus und Hintergrund und von der relativen Bewegungsrichtung zueinander ab. Während ähnliche Feuerraten für Balken mit hohem Kontrast relativ zum Hintergrund und für punktdefinierte Balken gefunden wurde, die sich über einen dunklen Hintergrund bewegten, führte ein statischer Zufallspunkthintergrund zu einer starken Abnahme der von dem SFM-Balken hervorgerufenen Antwort. Ein in die Gegenrichtung bewegter Hintergrund sowie ein reduziertes Kohärenzniveau des Zufallspunkthintergrundes führten dazu, dass die Multiunits auf den SFM- Balken nicht mehr mit einer Zunahme der Feuerraten reagierten. Um die hemmende Wirkung des Hintergrundes aufzuheben, musste der Hintergrund auf einer Fläche des visuellen Feldes, die der Größe des rezeptiven Feldes entsprach, abgedeckt werden. Dieses Ergebnis zeigt, dass die Feuerraten für diese Art Stimulus nicht wesentlich von Arealen außerhalb des rezeptiven Feldes beeinflusst werden. Zur weiteren Analyse der Fähigkeit von PMLS, SFM-Balken nur aufgrund des Bewegungskontrastes zwischen punktdefiniertem Objekt und Hintergrund zu erkennen, wurde mit Hilfe von zwei Tuningkurven-Stimuli, bei denen sich die Bewegungsrichtung der Punkte innerhalb des Balkens um 90° unterschied, die Vorzugsrichtung der Multiunits bestimmt. Die Auswertung ergab, dass sich die gemessene Vorzugsrichtung der Multiunit um 45° drehte, obwohl sich die Bewegungsrichtung des Balkens selbst nicht änderte. Darüber hinaus wurden verschiedene SFM-Stimuli untersucht, die alle dieselbe Bewegungsrichtung des Balkens, jedoch unterschiedliche Bewegungsrichtungen der Punkte innerhalb des Balkens aufwiesen. Wenn PMLS die Bewegung des SFM-Objekts statt der Bewegung der einzelnen Punkte verarbeitet, sollte die Feuerrate für alle diese Bedingungen identisch sein. Die Ergebnisse zeigen jedoch, dass sich die durch die verschiedenen SFM-Stimuli hervorgerufenen Feuerraten verringerten, je weiter sich die Punkte, die den Balken bildeten, von der Bewegungsrichtung des Balkens – und damit von der Vorzugsrichtung der Multiunit – weg bewegten. Durch dieses Ergebnis konnte gezeigt werden, dass Multiunits in PMLS nicht in der Lage sind, die Richtung von kinetisch definierten Balken zu analysieren und statt dessen nur die Bewegung der einzelnen Komponenten erfassen.
Nitric oxide (NO) represents a short-lived mediator that pivotally drives keratinocyte movements during cutaneous wound healing. In this study, we have identified p68 DEAD box RNA helicase (p68) from a NO-induced differential keratinocyte cDNA library. Subsequently, we have analyzed regulation of p68 by wound-associated mediators in the human keratinocyte cell line HaCaT. NO, serum, growth factors and pro-inflammatory cytokines were potent inducers of p68 expression in the cells. p68 was constitutively expressed in murine skin, but rapidly down-regulated upon injury. The down-regulation appeared to be transient, as p68 protein expression increased again after the inflammatory phase of repair. However, p68 protein expression did not completely disappear during wound inflammation, as immunohistochemistry and cell fractiona tion analysis revealed a restricted localization of p68 in keratinocyte nuclei of the developing epithelium. In line, cultured human (HaCaT) and murine (PAM 212) keratinocyte cell lines showed a nuclear localization of the helicase. Moreover, confocal microscopy revealed a strong localization of p68 protein within the nucleoli of the keratinocytes. Functional analyses demonstrated that p68 strongly participates in keratinocyte proliferation and gene expression. Keratinocytes that constitutively overexpressed p68 protein were characterized by a marked increase in serum-induced proliferation and vascular endothelial growth factor (VEGF) expression, whereas down-regulation of endogenous p68 using small interfering RNA (siRNA) markedly attenuated serum-induced proliferation and VEGF expression. Altogether, our results suggest a tightly controlled expression and nucleolar localization of p68 in keratinocytes in vitro and during skin repair in vivo that functionally contributes to keratinocyte proliferation and gene expression.
The detailed mechanism of the 20 S proteasome from Thermoplasma acidophilum is unknown. Substrates are degraded processively to small fragments without the release of intermediates, but the basis for this unique degradation mode remains obscure. The proteasome is a molecular machine, but how the different nanocompartments interplay and whether more than one substrate can be treated simultaneously has not been elucidated yet. To address these questions we had to disable the functionality of one aperture in order to dissect whether the other pore can compensate for the loss. As it is challenging to introduce mutations solely around one pore aperture of the highly symmetrical construct, we chose a novel approach by unique orientation of the proteasome at interfaces. For this purpose we purified recombinant 20 S proteasomes, where hexahistidine tags were fused either around the entrances or at the sides. According to electron microscopic studies we immobilized these constructs uniformly either end-on or side-on at metal-chelating interfaces (lipid vesicles, lipid monolayers and self-assembled thiol monolayers). Degradation of small fluorogenic peptides and large proteins like casein was analyzed. Small substrates were degraded with comparable activity by free and immobilized proteasomes, irrespective of their orientation. Thus it can be assumed that peptides can pass the sealed entrance of the 'dead-end' proteasome. However, larger substrates like fluorescently labeled casein were processed near the temperature optimum by side-on immobilized and soluble proteasomes with threefold activity compared to end-on immobilized proteasomes. Hence it can be concluded that one pore is sufficient for substrate entry and product release. In other words, the pore and antechamber can fulfil a triple function in the import and unwinding of substrates and the egress of products. With means of surface plasmon resonance the exact substrate/proteasome stoichiometry could be determined to ~1 for 'dead-end' proteasomes and ~2 for side-on immobilized (active and inactive) proteasomes. Most importantly, a fit with the Hill equation revealed positive cooperativity for side-on immobilized (Hill coefficient ~2) in contrast to end-on immobilized proteasomes (Hill coefficient ~1). Thus in case of soluble proteasomes two substrates bind presumably in opposite antechambers with positive cooperativity. The off-rate of casein as substrate is twofold for the active side-on immobilized proteasome in comparison to the end-on immobilized proteasome. The exact 2:1 stoichiometry of the off-rates equals the ratio of exit pathways amenable in case of side-on orientated versus 'dead-end' immobilized proteasomes. Thus crevices along the cylindrical body of the 20 S proteasome seem not to participate in the egress of small products. An inactive proteasome mutant displays a concentration-dependent off-kinetic against casein. Accordingly, the off-rate of the bisubstrate:proteasome complex can be attributed around half the value of the monosubstrate:proteasome complex. Consequently, substrates exit the inactive proteasome via the route of access due to obstruction of the trans side with an entering substrate. Hence the active proteasomes have to chop substrates down to small fragments prior to release through both pores. Thus the processive degradation mode might result from positive binding cooperativity. The on-rate constants for casein suggested that substrate association represents a two-step process comprising a rate-limiting translocation step and a fast binding step. As fluorescence cross-correlation revealed that two substrates can be co-localized in the proteasome and bind successively with increasing affinity (KD,1 = 8 µM versus KD,2 = 700 nM), an allosteric transition in the proteasome can be assumed. Combining our results with the data from other research groups led to a mechanistic model for the 20 S proteasome. Accordingly, the first substrate undergoes a slow translocation step, binds in the antechamber and diffuses subsequently to the catalytic centers, where it is degraded. By switching on the catalytic activity, the pores at both termini are dilated via conformational changes. Hence entry of the second substrate into the proteasome is facilitated due to omission of the rate-determining translocation step. The second substrate is either accommodated in the antechamber before it is processed (alternating degradation) or, most probably, is directly threaded into the central cavity (simultaneous degradation). As effusing peptides compete with entering proteins for binding in the antechamber, the pores are kept in an open state. After finishing digestion the pores are closed and a new degradation cycle can be reinitiated. In summary, substrate association with the proteasome underlies an ordered alternating binding mechanism in contrast to the random mode of degradation. Thus the two-stroke engine offers the advantage of speeding up degradation without enhancing complexity.
Fungi belonging to the Rhytismatales (Ascomycota) are parasites or endophytes of plants, some are saprophytes. Their fruiting bodies are localized in different organs of the host plants belonging to many different families of gymnosperms and angiosperms. Many species of Rhytismatales are known on species of Pinaceae, Ericaceae, and Poaceae. These fungi usually have ascomata that are more or less embedded in host tissue and open by longitudinal or radial splits. They have a more or less carbonized covering stroma, thin-walled, iodine negative asci, and ascospores usually covered by gelatinous sheaths.
In the present study, two lists of species of Rhytismatales in China are presented. One is based on literature and includes 103 species in 15 genera. The second one contains the names of the species in the present study, 57 species in 20 genera based on 90 specimens I collected in the Yunnan and Anhui province in China during July to August in 2001. 31 species in the second list are new species or new records for China, so we presently know 134 species in 22 genera of Rhytismatales for China. 28 new species of Rhytismatales are proposed, 21 species from the Yunnan province and seven from the Anhui province. Among them, three new species are proposed in three new genera, Nematococcomyces, New Genus 1, and New Genus 2, respectively. The 28 new species are Cerion sp., Coccomyces spp. 1-2, Colpoma spp. 1-2, Hypoderma spp. 1-6, Lirula sp., Lophodermella sp., Lophodermium spp. 1-5, Nematococcomyces rhododendri C.-L. Hou, M. Piepenbr. & Oberw., Neococcomyces sp., New Genus 1 sp., New Genus 2 sp., Rhytisma spp. 1-2, Soleella sp., Terriera spp. 1-2, and Therrya sp. The genus Davisomycella is proposed as a synonym of Lophodermella based on observations of the morphology, ecology, and the infected organ. The four genera Cerion, Naemacyclus, Terriera, and Therrya, and three species, Hypoderma rubi, Lophodermium uncinatum, and Naemacyclus pinastri, are reported for the first time for China. All the new taxa, the newly recorded ones, as well as six species which had not been illustrated in detail before, are carefully described and illustrated by line drawings in the present study.
The results show that species of Rhytismatales are highly diverse especially in the natural vegetation in high mountainous areas in China. Most species of Rhytismatales are conspicuously host specific. The diversity of Rhytismatales is closely related to that of the preferred hosts, which are members of Pinaceae, Ericaceae, and Cupressaceae. Based on the detailed morphological observations, the significance of different morphological characteristics for a natural classification of Rhytismatales is discussed. Genera are traditionally defined by character states of a few characteristics, namely the opening patterns of ascomata, the depth of ascomata in the host tissue, and asci and ascospore shape. Data from collections in the field, detailed morphological investigation, and molecular data show, however, that the ecology, the infected organ, the host relationship, and many other characteristics have to be combined to circumscribe natural groups.
The discussion of the systematic significance of morphological characteristics is complemented by molecular data. In the present study, partial nuclear large subunit rDNA sequences of 52 specimens representing 38 species are used to analyse phylogenetic relationships for members of Rhytismatales.
Most species of Rhytismatales are placed in a monophyletic group corresponding to the Rhytismatales in the Maximum Parsimony analysis. The delimitation of the Rhytismatales from the Helotiales is, however, difficult. Cyclaneusma minus should be transferred from the Rhytismatales to the Helotiales, and Cudonia circinans and Spathularia flavida from the Helotiales to the Rhytismatales. These tranfers have previously been proposed based on SSU rDNA analysis by other authors. New Genus 1 sp. has morphological characteristics typical for species of Rhytismatales. In the LSU rDNA analysis, however, it is more closely related to Helotiales rather than toRhytismatales. Therefore New Genus 1 sp. is placed in the Helotiales.
Tryblidiopsis pinastri is morphologically intermediate between members of Rhytismataceae and Cudoniaceae. LSU rDNA sequences in the present study show that T. pinastri is more closely related to species of Cudoniaceae. Therefore, this species is removed from the Rhytismataceae to the Cudoniaceae. The delimitation of further families could not be resolved in the present analysis.
Though many new morphological, ecological, and molecular phylogenetic findings are contributed for the first time, the systematic conclusions at generic, family, and order level can only be fragmentary in the present study. With more collections and more molecular data of the worldwide 450 known and many more unknown species of Rhytismatales at hand, a natural system combining morphological and molecular analysis can be elaborated.
Das westphälische Modell für Staatsinstitutionen, einschließlich nationaler Exekutive, Legislative und Judikative, hat sich aus den Ereignissen europäischer Geschichte heraus entwickelt. Seit dem Ende des Kalten Krieges dient es als grundlegendes Paradigma für Internationale Interventionen zum Wiederaufbau von gescheiterten - oder zum Aufbau von neuen - Staaten. Für die internationale Gemeinschaft fungiert das westphälische Modell als Maß zur Beurteilung ihrer Interventionen, wie zum Beispiel in Somalia, Kambodscha oder den Balkanstaaten. In den meisten Fällen gilt eine durch sie beaufsichtigte oder gar durchgeführte ‚freie und faire’ Wahl als hauptsächliche Massnahme zur Bildung eines ‚westphälischen’ und demokratischen Staates. Die Erfolgsrate solcher internationalen Friedenseinsätze und ‚state-building operations’ ist jedoch enttäuschend. Bei näherer Betrachtung der Misserfolge des letzten Jahrzehnts wird deutlich, daß sich die lokalen Gesellschaftssysteme der betroffenen Bevölkerungen oft beträchtlich von liberaler Demokratie unterscheiden. Dies ist insbesondere der Fall in Gesellschaften deren Ordnung nicht auf Staatsinstiutionen basiert. Ihnen liegen sozio-politische Systeme zugrunde die sich oft mit dem Paradigma des westlichen Staatssystems nur schwer vereinen lassen. Um im Rahmen internationaler Friedenseinsätze erfolgreich Staatstrukturen zu etablieren, ist es daher notwendig lokale Sozialstrukturen und lokale Konzepte politischer Legitimität und Autorität zu addressieren. Erst mit solchem Verständnis ist es möglich einen Staatsapparat in den Augen der Bevölkerung zu legitimieren. Ist Letzteres nicht der Fall, so kann sich eine Regierung zwar in Übereinstimmung mit internationalen Menschenrechten befinden, oder alle wichtigen demokratischen Einrichtungen vorweisen, jedoch dennoch dem Prinzip der Partizipation durch die Bevölkerung widersprechen. Ist dies das Endresultat eines internationalen Friedenseinsatzes, so hat die internationale Gemeinschaft ihre eigenen Werte bestaetigt. Jedoch herrscht kein Vertrauen zwischen der Bevölkerung und Regierung, da letztere nicht kompatibel mit dem Versaendnis der Bürger ist. Der ‚demokratische’ Staat ist nur schwerlich funktionsfähig.Der internationale Einsatz in Osttimor illustriert dieses Problem. Hier wurden die Vereinten Nationen (VN) mit dem Wiederaufbau und der Verwaltung eines Staates betraut (UNTAET ‚Übergangsregierung der Vereinten Nationen in Osttimor’). Zum ersten mal in der Geschichte übernahm die international Gemeinschaft damit die Souveränität über ein territoriales Gebiet...
A fundamental work on THz measurement techniques for application to steel manufacturing processes
(2004)
The terahertz (THz) waves had not been obtained except by a huge system, such as a free electron laser, until an invention of a photo-mixing technique at Bell laboratory in 1984 [1]. The first method using the Auston switch could generate up to 1 THz [2]. After then, as a result of some efforts for extending the frequency limit, a combination of antennas for the generation and the detection reached several THz [3, 4]. This technique has developed, so far, with taking a form of filling up the so-called THz gap . At the same time, a lot of researches have been trying to increase the output power as well [5-7]. In the 1990s, a big advantage in the frequency band was brought by non-linear optical methods [8-11]. The technique led to drastically expand the frequency region and recently to realize a measurement up to 41 THz [12]. On the other hand, some efforts have yielded new generation and detection methods from other approaches, a CW-THz as well as the pulse generation [13-19]. Especially, a THz luminescence and a laser, originated in a research on the Bloch oscillator, are recently generated from a quantum cascade structure, even at an only low temperature of 60 K [20-22]. This research attracts a lot of attention, because it would be a breakthrough for the THz technique to become widespread into industrial area as well as research, in a point of low costs and easier operations. It is naturally thought that a technology of short pulse lasers has helped the THz field to be developed. As a background of an appearance of a stable Ti:sapphire laser and a high power chirped pulse amplification (CPA) laser, instead of a dye laser, a lot of concentration on the techniques of a pulse compression and amplification have been done. [23] Viewed from an application side, the THz technique has come into the limelight as a promising measurement method. A discovery of absorption peaks of a protein and a DNA in the THz region is promoting to put the technique into practice in the field of medicine and pharmaceutical science from several years ago [24-27]. It is also known that some absorption of light polar-molecules exist in the region, therefore, some ideas of gas and water content monitoring in the chemical and the food industries are proposed [28-32]. Furthermore, a lot of reports, such as measurements of carrier distribution in semiconductors, refractive index of a thin film and an object shape as radar, indicate that this technique would have a wide range of application [33-37]. I believe that it is worth challenging to apply it into the steel-making industry, due to its unique advantages. The THz wavelength of 30-300 ¼m can cope with both independence of a surface roughness of steel products and a detection with a sub-millimeter precision, for a remote surface inspection. There is also a possibility that it can measure thickness or dielectric constants of relatively high conductive materials, because of a high permeability against non-polar dielectric materials, short pulse detection and with a high signal-to-noise ratio of 103-5. Furthermore, there is a possibility that it could be applicable to a measurement at high temperature, for less influence by a thermal radiation, compared with the visible and infrared light. These ideas have motivated me to start this THz work.
The biomarker record in two different lakes in central Europe, Lake Albano and Lake Constance, is used to reflect environmental changes and lake system response during the Late Glacial and Holocene. Extractable organic compounds in lake sediments, which can be assigned to their biological source (biomarkers) function as fingerprints of past aquatic or land plant organisms. Using gas chromatography coupled with mass spectrometry, 21 different biomarkers (predominantly steroids and triterpenoids) as well as a variety of n-alkanes, nalkanols, and n-alkanoic acids could be identified in the sediment records of Lake Albano and Lake Constance. In the Holocene sediments of Lake Albano, the distribution of biomarkers such as dinosterol (dinoflagellates), isoarborinol, and diplopterol (aquatic organisms) indicate three biomarker zones: The period between 0-3,800 years BP (zone 3) is characterized by high concentrations of these biomarkers and others such as tetrahymanol and diploptene. Conversely, zone 2 (3,800-6,500 years BP) shows very low concentrations of all autochthonous biomarkers. In zone 1 (6,500–11,480 years BP), dinosterol, isoarborinol, and diplopterol range on a relatively high level, whereas diploptene and tetrahymanol display comparatively low concentrations. The results suggest at least two distinct changes in the predominance of primary producers during the Holocene, which are related to changes in the lake system such as lake mixing and water column stratification. This interpretation is consistent with previous investigations of Lake Albano sediments including pigment and hydrogen index data (Ariztegui et al., 1996b; Guilizzoni et al., 2002). Allochthonous biomarkers such as long-chain n-alkanes, amyrenones and friedelin indicate a development from forest to a more open landscape from 6,000 and 5.000 years BP, respectively. After a period of high concentrations during the first half of the Holocene, all biomarkers derived from deciduous trees exhibit relatively low values until around 1,000 years BP. Again, this is consistent with results from previous pollen investigations (Ariztegui et al., 2000). The sediment core from Upper Lake Constance comprises the Late Glacial and Holocene. It was analysed for biomarkers and inorganic tracers in order to compare the biomarker results with other proxy data from the same core. Magnetic susceptibility (MS) was measured to get a high-resolution stratigraphic framework of the core and to obtain further information about changes of the proportions of allochthonous and autochthonous input. Enhanced concentrations and accumulation rates of dinosterol (biomarker for dinoflagellates) and biogenic calcite give evidence of increasing lake productivity at the beginning of the Holocene followed by a decrease in bioproductivity after around 7,000 years BP. Younger Dryas sediments are characterized by low amounts of both dinosterol and biogenic calcite indicating a low productivity. The comparison of the concentrations and accumulation rates of b-sitosterol and stigmastanol with parameters reflecting lake productivity suggests that both steroids in Lake Constance sediments are mainly derived from terrigenous sources. Biomarkers as well as concentrations and accumulation rates of allochthonous inorganic compounds such as titanium, magnesium and strontium indicate a slightly enhanced allochthonous input after 8,500 years BP. Significant increase of erosive matter input from enhanced soil erosion is not observed before 4,000 years BP. This can be attributed to the combined effects of precipitation increase as a result of climatic deterioration and anthropogenic deforestation which is consistent with observations from other lakes in Central Europe. The MS record of Lake Constance confirms these results by tracing the climatically induced shifts of more intense bioproduction (low MS caused by increased calcite deposition) during the ‘climatic optimum’. This is followed by increasing input of terrigenous sediment compounds during colder and wetter periods which lead to higher MS values in the lake sediments. The occurrence of tetrahymanol in Lake Constance sediments questions the unambiguous use of tetrahymanol as an indicator for water column stratification. Anaerobic organic macroaggregates within the oxygenated, photic zone of the water column have to be considered as a possible living space for anaerobic microorganisms containing tetrahymanol. The direct comparison of two very different lakes Albano and Constance with respect to biomarkers indicating climate or environmental change provides a contribution to the recent biomarker research for a better understanding of biomarkers in lacustrine sediments.
This study analyses the labour market effects of fixed-term contracts (FTCs) in West Germany by microeconometric methods using individual and establishment level data. In the first part of the study the role of FTCs in firms’ labour demand is analysed. An econometric investigation of the firms’ reasons for using FTCs focussing on the identification of the link between dismissal protection for permanent contract workers and the firms’ use of FTCs is presented. Furthermore, a descriptive analysis of the role of FTCs in worker and job flows at the firm level is provided. The second part of the study evaluates the short-run effects of being employed on an FTC on working conditions and wages using a large cross-sectional dataset of employees. The final part of the study analyses whether taking up an FTC increases the (permanent contract) employment opportunities in the long-run (stepping stone effect) and whether FTCs affect job finding behaviour of unemployed job searchers. Firstly, an econometric unemployment duration analysis distinguishing between both types of contracts as destination states is performed. Secondly, the effects of entering into FTCs from unemployment on future (permanent contract) employment opportunities are evaluated attempting to account for the sequential decision problem of job searchers.
The enzyme quinol:fumarate reductase (QFR) from the anaerobic e-proteobacterium Wolinella succinogenes is part of the anaerobic respiratory system of this organism. It couples the reduction of fumarate to succinate to the oxidation of menaquinol to menaquinone. W. succinogenes uses fumarate as terminal electron acceptor and can use various substrates (e.g., formate or molecular hydrogen) as electron donors. The concerted catalytic substrate turnover of either a hydrogenase or a formate dehydrogenase in conjunction with QFR contributes to the generation of an electrochemical potential gradient across the bacterial plasma membrane, which is used for the phosphorylation of ADP with inorganic phosphate, Pi, to ATP. In addition to an FAD (in subunit A) and three iron-sulfur clusters (in subunit B), QFR binds a low- and a high-potential heme b group in its transmembrane subunit C, as was ultimately shown in the crystal structure at 2.2 Å resolution (Lancaster et al., 1999, Nature 402, 377– 385). Both hemes are part of the electron transport chain between the two catalytic sites of this redox enzyme. The midpoint potentials of the hemes are well established but their assignment to the distal and proximal positions in the structure had not yet been determined. Furthermore, QFR from W. succinogenes has been proposed to exhibit a novel coupling mechanism of transmembrane electron and proton transfer, which has been described in the so-called “E-pathway” hypothesis (Lancaster, 2002, Biochim. Biophys. Acta 1565, 215–231). The aim of this project was to characterize the relationship between structure and function of QFR and to investigate the details of the proposed coupling mechanism (“Epathway”) with the help of computer-based electrostatic calculations on the QFR wild-type (WT) coordinates, and electrochemically induced FTIR and VIS difference spectroscopy on the QFR WT and available variant enzymes (in particular enzyme variant E180Q, in which the glutamic acid at position C180 has been replaced by a glutamine). 1.) It was demonstrated in this study that the diheme-containing QFR exhibits stable and reproducible electrochemically induced FTIR difference bands in the midinfrared range from 1800 cm-1 to 1000 cm-1 that reflect transitions from the reduced to the oxidized state of the enzyme. The spectral features that were observed in the FTIR difference spectra are fully reversible when changing from a reductive to an oxidative reference potential at the working electrode and vice versa. This indicates that the underlying redox reactions of the enzyme at the gold grid working electrode are also fully reversible under the applied experimental conditions. The same reversible spectral redox behavior in the visible range could also be ascertained for the Soret- and a-band of the two heme b groups of QFR. This behavior allowed to reliably determine the heme b midpoint potentials of QFR at various pH values. Analysis of the FTIR difference spectra in the amide I range yields evidence for structural reorganizations of the polypeptide backbone upon the electrochemically induced redox reaction. 2.) The redox titrations of the high- and low-potential heme b of QFR as simulated by multiconformation continuum electrostatics (MCCE) calculations showed a very high level of agreement with respect to the experimentally observed midpoint potentials of the heme b groups at pH 7. As determined with the help of the theoretical calculations, prominent features governing the differences in redox potential between the two hemes are the higher loss of reaction field energy for the proximal heme and the stronger destabilization of the oxidized form of the proximal heme due to several buried and ionized Arg and Lys residues. The explicit incorporation of crystallographically identified water molecules in the calculations had a noticeable effect on the absolute values of the determined midpoint potentials, although the relative difference of the two obtained midpoints did not change significantly. The results of the electrostatic calculations clearly showed that the lowpotential heme corresponds to the distal position bD in the structure, and that the high-potential heme is identical to the proximal heme bP. This assignment could previously not be achieved unequivocally with experimental methods. 3.) In addition, the currently discussed mechanism of coupled electron and proton transfer in the QFR of W. succinogenes (i.e., the “E-pathway” hypothesis) is further supported by the results of this study. The simulations of intermediate states of electron transfer via the heme b groups show that the protonation state of the key amino acid residue Glu C180 depends on the redox states of the heme groups as suggested in the “E-pathway” hypothesis. This result yields a possible mechanism for the coupling of transient transmembrane proton transfer via Glu C180 to the electron transfer via the heme b groups, since Glu C180 could be part of a “proton wire” and its redox-dependent protonation state could serve as the regulatory element of the “E-pathway”. Furthermore, the results of simulated heme reduction indicate that the side chain of Glu C180 also changes its conformation with respect to the redox state of the hemes. Both major results concerning the role of Glu C180, the change of protonation as well as the reorientation of the side chain upon reduction of the heme groups, are consistent with the results from electrochemically induced FTIR difference spectroscopy: Of particular interest was the spectral range above 1710 cm-1, where C=O stretching vibrations of protonated COOH carboxyl groups absorb, because those groups can act as proton donors, respectively acceptors, and can be involved in intra-protein proton transfer reactions. It was possible to observe signals of such protonated carboxyl groups originating from QFR enzyme, which either change their protonation state and/or experience an environmental change in the course of the induced redox reaction. This finding was supported by the fact that the relevant FTIR difference signals are sensitive to an isotopic hydrogen/deuterium (1H/2H) exchange via the buffer solution, since they were shifted towards lower wavenumbers in D2O. Furthermore, it could be shown with the help of site-directed mutagenesis that the acidic residue Glu C180, which is located in the membranespanning, diheme-containing subunit C of QFR, is contributing to the redox dependent signal of protonated carboxyl groups. The observed residual signal in the FTIR double-difference spectrum of QFR wild-type and enzyme variant E180Q (Glu C180 has been replaced with a Gln residue) could be interpreted as a protonation/deprotonation event that is superimposed by an environmental effect on the specific C=O vibration. This result strongly supports the proposed “E-pathway” of coupled transmembrane electron and proton transfer in the QFR enzyme, which states that residue Glu C180 is an essential constituent of a transient redox-controlled transmembrane proton transfer pathway. 4.) As a second possible constituent of the suggested “E-pathway”, the ring C propionate of the distal heme was found to be unusually fully protonated in all simulated redox states, indicating a possible role as a transient proton donor/acceptor in the “E-pathway”. Similarly to Glu C180, experimental evidence from FTIR difference spectroscopy on a modified QFR with 13C-labeled heme propionates was obtained, which indicates an involvement of at least one of the two propionates of heme bD in proton transfer. The observed signals can tentatively be interpreted as a redox-coupled (de)protonation of the ring C propionate of bD, which is possibly xiii superimposed by a conformational or environmental change of the specific propionate. 5.) Also the observation of a strong redox Bohr effect for both heme b groups in QFR is in line with the proposed “E-pathway” hypothesis, as this effect yields a possible and well-established mechanism for the coupling of proton transfer and redox changes of the heme groups. The comparison of the observed effect in QFR WT and E180Q together with the results from FTIR spectroscopy and MCCE calculation indicate that the ring C propionate of the distal heme is dominating the pHdependence of the midpoint potential of bD, and that the corresponding group for bP is Glu C180. The origin of the redox Bohr effect for bP in the enzyme variant E180Q (which is dramatically changed with respect to the WT) could not be identified unequivocally, but the observation of this redox Bohr effect in the variant implies the presence of other protolytic groups, which interact with heme bP and which may be necessary for a functional “E-pathway”.
Ligands of Iron-Sulphur Cluster N2: In this work the ubiquinone reducing catalytic core of NADH:ubiquinone oxidoreductase (complex I) from Y. lipolytica was studied by a series of point mutations replacing conserved histidines or arginines in the 49-kDa subunit. Although the missing 4th ligand of cluster N2 could not be found in the 49-kDa subunit of complex I, it was clearly demonstrated that iron-sulphur cluster N2 resides directly on the interface between the PSST and 49-kDa subunits. The results presented in this work show that residues in the 49-kDa subunit have strong influence on this redox centre and also on catalytic activity. The strong influence of Arg-141 and His-226 residues in 49-kDa subunit on this cluster can be deducted from complete loss of N2 signals in EPR spectra such as in case of mutants H226A and R141A. In the case of mutant H226M the EPR signal from cluster N2 was shifted and cluster N2 even lost the pH dependence of its redox midpoint potential and became more similar to the other so called 'isopotential' clusters. Specifically in the case of mutants R141M and R141K the characteristic signature of cluster N2 became undetectable in EPR spectra. However, specific dNADH:DBQ oxidoreductase activity that could be inhibited with the specific complex I inhibitors DQA and rotenone was not absolutely abolished but rather reduced. These reductions in complex I activity did not correspond to similar reductions in the specific EPR signal of cluster N2 as it was observed in the His-226 mutant series. No indications could be found that these mutations had modified the magnetic properties of cluster N2, resulting in different EPR spectra. From these observations it could be concluded that both mutants R141K and R141M virtually or entirely lack iron-sulphur cluster N2. The rates in complex I activity could be reconciled with electron transfer theory: After removal of a single redox centre in a chain, electron transfer rates are predicted to be still much faster than steady-state turnover of complex I. These results from mutants R141K, R141M and also the result from mutant H226M that protons are being pumped even if the redox midpoint potential of cluster N2 is not pH dependent questions the prominent role in the catalytic mechanism of complex I that has been ascribed to cluster N2. Histidine 91 and 95 were found to be absolutely essential for activity of complex I since in both mutants complex I was fully assembled and artificial NADH:HAR activity was parental whereas complex I specific dNADH:DBQ activity was abolished. The signal from cluster N2 in EPR spectra was parental for all His-91 and -95 mutants. Mutations at the C-terminal arginine 466 affected ubiquinone affinity and inhibitor sensitivity but also destabilised complex I. All these results provide further support for a high degree of structural conservation between the 49-kDa subunit of complex I and the large subunit of water soluble [NiFe] hydrogenases. Remodelling of Human Pathogenic 49-kDa Mutations in Y. lipolytica: Y. lipolytica has been proven a good system for studying complex I properties and thus also for studying defects that occur in humans. In this work pathogenic mutations in the 49-kDa subunit of complex I were recreated and studied. The P232Q mutant showed non-assembly of complex I and this is probably the cause why this mutation was lethal in patients. The mutants R231Q and S416P were parental for the content, artificial and also specific complex I activity, Km for DBQ and IC50 for DQA. From these results we can conclude that these two residues Arg-228 and Ser-413 in mammalian cells have specific structural importance for the 49-kDa subunit even if they are not directly involved in catalytic process.
Results were presented from Brownian dynamics simulations for cyt c molecules approximated as spherical particles with diameter 2R ' 3.3 nm interacting with a charged planar membrane surface. Using the well-known Ermak-McCammon algorithm of ref. [36, 37] for solving the Langevin equations (see Chapter 2), a new computer program in C++ was developed. An overview of the way it is implemented is given in Chapter 3. The program in its current state is able to compute the trajectories (translation and rotation) of hundreds of spherical particles in systems with typical dimensions of 103 − 1003 nm3 . As explained in the introductory Chapter 1 the motivation for studying the dynamics of cyt c molecules in such systems came from the progress in the research of photosynthetic bacteria, e.g. While the internal processes of energy transduction (light harvesting, channelling to RC, charge separation) are quite well understood, the dynamics of soluble cyt c as an electron transporter in this context is not yet clear. In many textbooks one can find illustrations where a single cyt c is responsible for the electron transport between two integral membrane proteins (the reaction centre RC and the bc1 complex). But as pointed out in publications like refs. [49], [59], [60], [61] or [62] biological cells are crowded with different molecules. Consequently, one can assume that the electron transport between two integral membrane proteins is not simply taken on by one single cyt c molecule. Instead it is likely that many of these particles are located in a cyt c pool above the membrane and that they perform the electron transport in turns. Thus, it is desirable to have a simulation package that is able to compute the trajectories of many proteins. Note that the detailed processes of electron transfer and binding to membrane proteins are not modelled here. The details of these processes are quite complicated so that we refrained from including them in the coarse-grained simulations. Here, the actual binding is simply defined by a particle distance zb from the membrane which marks the beginning of the attractive potential. ...
Reliable communication in the central nervous system requires the precise control of the duration and the intensity of neurotransmitter action at specific molecular targets. After their release at the synapse, neurotransmitters activate pre- and/or postsynaptic receptors. To terminate synaptic transmission, neurotransmitters are in turn inactivated by either enzymatic degradation or active uptake into neuronal and/or glial cells by neurotransmitter transporters. In the present study, two types of membrane proteins involved in transcellular signal transduction were investigated, the P2X receptors, which are ATP-gated ion channels and the glutamate transporters of the EAAT family. The first part of this study is concerned with the targeting and anchoring of P2X receptors at specific locations. P2X receptors play a role of fast excitatory neurotransmission to extracellular ATP in both the peripheral and central nervous system. For several ligand-gated ion channel, like glycine receptors or nicotinic acetylcholine receptors, it is known that specific binding proteins exist, which are involved in receptor trafficking and anchoring of the receptors at appropriate sites on the synapse. Within the P2X family, amino acid homology is scattered over the protein sequence excepted of the cytoplasmic C-terminal tails, which do not share significant sequence similarity, indicating that they might provide peculiar properties to the respective receptor isoforms. Using GST fusion proteins containing the C terminal end of the P2X2A, P2X5 and P2X7 subunits as baits, ßIII tubulin was identified by MALDI-TOF mass spectrometry as a direct interacting partner of P2X2A. ßIII tubulin did not interact with P2X5 nor with P2X7. The tubulin binding motif of P2X2A could be confined to a 42 amino acid long region ranging from amino acid 371 to 412 of the complete P2X2A subunit. This domain, which includes a total of six serine residues and twelve proline residues, interestingly overlaps to a significant extent with a 69 amino acid long sequence, which is lacking in P2X2B, a splice variant of P2X2A. P2X2B receptors are known to desensitize - significantly faster than P2X2A receptors. The interaction of the P2X2A receptor with ßIII tubulin may contribute to receptor desensitization as well as tethering of the P2X2A receptor at specialized regions of the cell. In a second part of this work, the oligomeric state of two distantly related glutamate transporters, the human glial glutamate transporter hEAAT2, and the glutamate transporter ecgltP of E.coli was determined. Excitatory amino acid transporters (EAATs) buffer and remove synaptically released L-glutamate and maintain its concentration below neurotoxic levels. Mammalian glutamate transporter subunits are known to form homomultimers, but controversial numbers of subunits per transporter complex have been reported, ranging from 2-5. Both hEAAT2 and ecgltP proteins expressed at high levels in Xenopus laevis oocytes, from which they were purified in a [35S]methionine-labeled form under nondenaturing conditions by metal affinity chromatography. Blue native PAGE analysis revealed that both the hEAAT2 and ecgltP transporters exist exclusively as homogenous populations of homotrimers in Xenopus oocytes. The trimeric structure was corroborated by chemical crosslinking. Also, ecgltP purified as a recombinant protein from its natural host E.coli migrated as a trimeric protein on blue native PAGE gels. The conservation of the quaternary structure from prokaryotes to mammals assigns an important functional role to the trimeric structure. Glutamate transporters are known to exhibit a dual mode of operation by functioning both as glutamate Na+/K+/H+ co-transporters and as anion channels. It is intriguing to speculate that the EAAT monomer is responsible for the secondary active transport of glutamate, whereas a barrel-like arrangement of the three subunits forms a central anion pore mediating anion conductivity.
Proton-translocating NADH:ubiquinone oxidoreductase (complex I) transports two electrons from NADH to membranal ubiquinone: in this process protons are translocated across the membrane, producing 40% of the total proton gradient between matrix side and intermembrane space. Mitochondrial complex I contains at least 46 subunits in mammals, and has a molecular weight of around 1000 kDa. Electronic microscopy analysis showed that complex I has an L-form, which consists of two domains: a peripheral “arm” (hydrophilic domain) and a membrane “arm” (hydrophobic domain). The peripheral domain, which protrudes into the matrix, contains one non-covalently bound flavin mononucleotide (FMN) and the iron-sulfur clusters N1a, N1b, N2, N3, N4 and N5 as redox active groups. They transport electrons from NADH to ubiquinone. Cluster N2 is supposed to be the immediate electron donor to ubiquinone by virtue of its highest and pH dependent redox midpoint potential (Em,7 –150 mV). The exact location of the tetra-nuclear cluster N2 is still object of discussion. The TYKY and the PSST subunits contain three binding motifs for tetranuclear clusters which are formed by twelve cysteins. In an effort to investigate the “ubiquinone reduction module” of complex I, in the first part of this work site directed mutagenesis of the TYKY and PSST subunits has been carried out. Mutant strains were characterised in terms of complex I content, catalytic activity and EPR signature of cluster N2. The second part of this work was aimed at developing a substrate inducible version of the internal alternative NADH:ubiquinone oxidoreductase (NDH2i). A substrate inducible NDH2i is expected to offer a “switch” between complex I activity dependent (no NDH2i activity) and independent (NDH2i activity) cell growth, by changing between activating and non-activating substrates. This strategy would allow the screening for two types of complex I mutants, which is a prerequisite for realising a random PCR mutagenesis of single subunits of complex I, that allows the production of a high number of point mutations in relatively short time. Y. lipolytica complex I deficiency mutant strains could be easily identified, by virtue of their inability to survive under complex I dependent growth conditions (no NDH2i activity). By this way, amino acids that have an important role for complex I structure or function could be identified by subsequent sequence analysis. Each of the twelve cysteines that form the above mentioned three binding motifs for iron-sulfur cluster have been mutagenised. In mutant mitochondrial membranes, no assembled complex I could be detected. From these data one may conclude that the mutagenised 6 SUMMARY 92 cysteines play an important role for complex I stability, or that are a prerequisite for complex I assembly in Y. lipolytica, but there is not direct evidence indicating that any of the four mutagenised residues acts as a ligand. Two aspartates in the PSST subunit, Asp-99 and Asp-115, were found to be essential for complex I catalytic activity. EPR spectroscopic analysis indicated that the electron transfer to N2 cluster was not blocked and implied that this was not the reason for the loss of catalytic activity. From these data it can be concluded that D99 and D115 play a vital role for complex I NADH:ubiquinone reductase activity, but are not ligands for cluster N2 and that their position is not close enough to the cluster to influence directly its electromagnetic environment. Three mutations, identified in the PSST and TYKY homologous subunits of patients affected with Leigh syndrome (V119M in PSST, P78L and R101H in TYKY) were reconstructed in the obligate aerobic yeast Y. lipolytica. This approach may help to understand the aetiology of the Leigh syndrome, in terms of the ability of complex I to oxidize NADH and to transport electrons. In fact, all three mutations showed effects on electron transport, reducing the VMax by about 50%. Mutant V119M in the PSST subunit, which had a lethal effect in two patients that were homozygous for this mutation, affects a fully conserved residue. Overall, the results from site directed mutagenesis carried out so far support the theory that the “catalytic core ” (N2 cluster and quinone binding site) of complex I has been evolved from the electron transfer module of the [Ni-Fe] hydrogenases. In fact, mutagenesis of residues that are fully conserved between complex I and [Ni-Fe] hydrogenases, showed dramatic effects on complex I in terms of assembly (cysteine mutants) or catalytic activity (D99-D115). Differently, changing aspartate 174 and glutamic acid 185 (not fully conserved, Fig 4.1A) had little or no effect on the Michaelis-Menten parameters and N2 EPR signal. In recent years Y. lipolytica has been developed as a yeast genetic system to study mitochondrial complex I. The present work introduced the promoter for the isocitrate lyase (pICL1) as a useful tool for the substrate selective expression of the internal version of the alternative NADH:ubiquinone oxidoreductase (pICL1-NDH2i). This allows to rescue complex I deficiencies “in vivo” selectively by growth on acetate (or ethanol) medium. The integration of the pICL1-NDH2i construct into the genome of Y. lipolytica and subsequent deletion of nuclear-coded subunits like PSST, TYKY and 49 kDa, would contribute to further develop this organism as a useful genetic model for studying subunits of mitochondrial complex I by site directed mutagenesis.
In dieser Arbeit werden Untersuchungen über die Anwendbarkeit von vier Methoden zur selektiven Einführung von Radikalen in DNA vorgestellt. Hierzu wurde die EPR-Spektroskopie (Elektronen-paramagnetische Resonanz) benutzt. Die selektive Einführung und Erzeugung von Radikalen in DNA ist nötig, um J-Kopplungen in DNA zu untersuchen. Vor dem Fernziel der Bestimmung der Austauschkopplungskonstanten J in biradikalischer DNA und deren Korrelation mit der charge-transfer-Geschwindigkeitskonstanten kCT stellen diese Untersuchungen einen wichtigen Ausgangspunkt dar. Stabile aromatische Nitroxide. Simulationen von Raumtemperatur-CW-X-Band-EPRSpektren fünf verschiedener aromatischer Nitroxide, welche potentielle DNA-Interkalatoren sind, wurden durchgeführt. Die aromatischen Nitroxide zeigen aufgelöste Hyperfeinkopplungen, welche zu dem Schluss führen, dass die Spindichte in hohem Maße delokalisiert ist, was die Verwendung dieser Verbindungen zur Messung von J-Kopplungen in biradikalischer DNA erlaubt. Transiente Guanin-Radikale. Transiente Guanin-Radikale werden in DNA selektiv durch die Flash-Quench-Technik erzeugt, bei der optisch anregbare Ruthenium-Interkalatoren verwendet werden. Transiente Thymyl-Radikale aus UV-bestrahltem 4'-Pivaloyl-Thymidin. Es werden photoinduzierte Prozesse untersucht, welche durch Bestrahlung von Thymin-Nukleosiden, die an der 4’-Position die optisch spaltbare Pivaloyl-Gruppe tragen, erzeugt werden. Dieses Nukleosid wurde speziell dafür entworfen, um Elektronenlöcher in DNA zu injizieren. In dieser Arbeit wird gezeigt, dass diese Verbindung benutzt werden kann, um selektiv eine Thymin-Base zu reduzieren. Transiente Thymyl-Radikale erzeugt durch ein neuartig modifiziertes Thymin nach UV-Bestrahlung. Photoinduzierte Prozesse, welche durch Bestrahlung eines ähnlichen Thymidin-Nukleosids erzeugt wurden, werden hier untersucht. Dieses Thymidin- Nukleosid wurde modifiziert, indem die optisch spaltbare Pivaloyl-Gruppe an eine Seitenkette angehängt wurde, welche an der C6-Position der Thymin-Base sitzt. Die Thymin-Base wurde speziell dafür entworfen, um Elektronen in DNA zu injizieren. In dieser Arbeit wurde bestätigt, dass ein Überschuss-Elektron selektiv auf eine Thymin-Base transferiert werden kann.
Die in Englisch verfasste Dissertation, die unter der Betreuung von Herrn Prof. Dr. H. F. de Groote, Fachbereich Mathematik, entstand, ist der Mathematischen Physik zuzuordnen. Sie behandelt Stonesche Spektren von Neumannscher Algebren, observable Funktionen sowie einige Anwendungen in der Physik. Das abschließende Kapitel liefert eine Verallgemeinerung des Kochen-Specker-Theorems. Stonesche Spektren und observable Funktionen wurden von de Groote eingeführt. Das Stonesche Spektrum einer von Neumann-Algebra ist eine Verallgemeinerung des Gelfand-Spektrums, die observablen Funktionen verallgemeinern die Gelfand-Transformierten. Da de Grootes Ergebnisse zum großen Teil unveröffentlicht sind, folgt nach dem Einleitungskapitel im zweiten Kapitel eine Übersichtsdarstellung dieser Ergebnisse. Das dritte Kapitel behandelt die Stoneschen Spektren endlicher von Neumann-Algebren. Für Algebren vom Typ In wird eine vollständige Charakterisierung des Stoneschen Spektrums entwickelt. Zu Typ-II1-Algebren werden einige Resultate vorgestellt. Das vierte Kapitel liefert. einige einfache Anwendungen des Formalismus auf die Physik. Das fünfte Kapitel gibt erstmals einen funktionalanalytischen Beweis des Kochen-Specker-Theorems und liefert die Verallgemeinerung dieses Satzes, wobei die Situation für alle von Neumann-Algebren geklärt wird.
Die Ermittlung von Proteinstukturen mittels NMR-Spektroskopie ist ein komplexer Prozess, wobei die Resonanzfrequenzen und die Signalintensitäten den Atomen des Proteins zugeordnet werden. Zur Bestimmung der räumlichen Proteinstruktur sind folgende Schritte erforderlich: die Präparation der Probe und 15N/13C Isotopenanreicherung, Durchführung der NMR Experimente, Prozessierung der Spektren, Bestimmung der Signalresonanzen ('Peak-picking'), Zuordnung der chemischen Verschiebungen, Zuordnung der NOESY-Spektren und das Sammeln von konformationellen Strukturparametern, Strukturrechnung und Strukturverfeinerung. Aktuelle Methoden zur automatischen Strukturrechnung nutzen eine Reihe von Computeralgorithmen, welche Zuordnungen der NOESY-Spektren und die Strukturrechnung durch einen iterativen Prozess verbinden. Obwohl neue Arten von Strukturparametern wie dipolare Kopplungen, Orientierungsinformationen aus kreuzkorrelierten Relaxationsraten oder Strukturinformationen, die sich in Gegenwart paramagnetischer Zentren in Proteinen ergeben, wichtige Neuerungen für die Proteinstrukturrechnung darstellen, sind die Abstandsinformationen aus NOESY-Spektren weiterhin die wichtigste Basis für die NMR-Strukturbestimmung. Der hohe zeitliche Aufwand des 'peak-picking' in NOESY-Spektren ist hauptsächlich bedingt durch spektrale Überlagerung, Rauschsignale und Artefakte in NOESY-Spektren. Daher werden für das effizientere automatische 'Peak-picking' zuverlässige Filter benötigt, um die relevanten Signale auszuwählen. In der vorliegenden Arbeit wird ein neuer Algorithmus für die automatische Proteinstrukturrechnung beschrieben, der automatisches 'Peak-picking' von NOESY-Spektren beinhaltet, die mit Hilfe von Wavelets entrauscht wurden. Der kritische Punkt dieses Algorithmus ist die Erzeugung inkrementeller Peaklisten aus NOESY-Spektren, die mit verschiedenen auf Wavelets basierenden Entrauschungsprozeduren prozessiert wurden. Mit Hilfe entrauschter NOESY-Spektren erhält man Signallisten mit verschiedenen Konfidenzbereichen, die in unterschiedlichen Schritten der kombinierten NOE-Zuordnung/Strukturrechnung eingesetzt werden. Das erste Strukturmodell beruht auf stark entrauschten Spektren, die die konservativste Signalliste mit als weitgehend sicher anzunehmenden Signalen ergeben. In späteren Stadien werden Signallisten aus weniger stark entrauschten Spektren mit einer größeren Anzahl von Signalen verwendet. Die Auswirkung der verschiedenen Entrauschungsprozeduren auf Vollständigkeit und Richtigkeit der NOESY Peaklisten wurde im Detail untersucht. Durch die Kombination von Wavelet-Entrauschung mit einem neuen Algorithmus zur Integration der Signale in Verbindung mit zusätzlichen Filtern, die die Konsistenz der Peakliste prüfen ('Network-anchoring' der Spinsysteme und Symmetrisierung der Peakliste), wird eine schnelle Konvergenz der automatischen Strukturrechnung erreicht. Der neue Algorithmus wurde in ARIA integriert, einem weit verbreiteten Computerprogramm für die automatische NOE-Zuordnung und Strukturrechnung. Der Algorithmus wurde an der Monomereinheit der Polysulfid-Schwefel-Transferase (Sud) aus Wolinella succinogenes verifiziert, deren hochaufgelöste Lösungsstruktur vorher auf konventionelle Weise bestimmt wurde. Neben der Möglichkeit zur Bestimmung von Proteinlösungsstrukturen bietet sich die NMR-Spektroskopie auch als wirkungsvolles Werkzeug zur Untersuchung von Protein-Ligand- und Protein-Protein-Wechselwirkungen an. Sowohl NMR Spektren von isotopenmarkierten Proteinen, als auch die Spektren von Liganden können für das 'Screening' nach Inhibitoren benutzt werden. Im ersten Fall wird die Sensitivität der 1H- und 15N-chemischen Verschiebungen des Proteinrückgrats auf kleine geometrische oder elektrostatische Veränderungen bei der Ligandbindung als Indikator benutzt. Als 'Screening'-Verfahren, bei denen Ligandensignale beobachtet werden, stehen verschiedene Methoden zur Verfügung: Transfer-NOEs, Sättigungstransferdifferenzexperimente (STD, 'saturation transfer difference'), ePHOGSY, diffusionseditierte und NOE-basierende Methoden. Die meisten dieser Techniken können zum rationalen Design von inhibitorischen Verbindungen verwendet werden. Für die Evaluierung von Untersuchungen mit einer großen Anzahl von Inhibitoren werden effiziente Verfahren zur Mustererkennung wie etwa die PCA ('Principal Component Analysis') verwendet. Sie eignet sich zur Visualisierung von Ähnlichkeiten bzw. Unterschieden von Spektren, die mit verschiedenen Inhibitoren aufgenommen wurden. Die experimentellen Daten werden zuvor mit einer Serie von Filtern bearbeitet, die u.a. Artefakte reduzieren, die auf nur kleinen Änderungen der chemischen Verschiebungen beruhen. Der am weitesten verbreitete Filter ist das sogenannte 'bucketing', bei welchem benachbarte Punkte zu einen 'bucket' aufsummiert werden. Um typische Nachteile der 'bucketing'-Prozedur zu vermeiden, wurde in der vorliegenden Arbeit der Effekt der Wavelet-Entrauschung zur Vorbereitung der NMR-Daten für PCA am Beispiel vorhandener Serien von HSQC-Spektren von Proteinen mit verschiedenen Liganden untersucht. Die Kombination von Wavelet-Entrauschung und PCA ist am effizientesten, wenn PCA direkt auf die Wavelet-Koeffizienten angewandt wird. Durch die Abgrenzung ('thresholding') der Wavelet-Koeffizienten in einer Multiskalenanalyse wird eine komprimierte Darstellung der Daten erreicht, welche Rauschartefakte minimiert. Die Kompression ist anders als beim 'bucketing' keine 'blinde' Kompression, sondern an die Eigenschaften der Daten angepasst. Der neue Algorithmus kombiniert die Vorteile einer Datenrepresentation im Wavelet-Raum mit einer Datenvisualisierung durch PCA. In der vorliegenden Arbeit wird gezeigt, dass PCA im Wavelet- Raum ein optimiertes 'clustering' erlaubt und dabei typische Artefakte eliminiert werden. Darüberhinaus beschreibt die vorliegende Arbeit eine de novo Strukturbestimmung der periplasmatischen Polysulfid-Schwefel-Transferase (Sud) aus dem anaeroben gram-negativen Bakterium Wolinella succinogenes. Das Sud-Protein ist ein polysulfidbindendes und transferierendes Enzym, das bei niedriger Polysulfidkonzentration eine schnelle Polysulfid-Schwefel-Reduktion katalysiert. Sud ist ein 30 kDa schweres Homodimer, welches keine prosthetischen Gruppen oder schwere Metallionen enthält. Jedes Monomer enhält ein Cystein, welches kovalent bis zu zehn Polysulfid-Schwefel (Sn 2-) Ionen bindet. Es wird vermutet, dass Sud die Polysulfidkette auf ein katalytischen Molybdän-Ion transferiert, welches sich im aktiven Zentrum des membranständigen Enzyms Polysulfid-Reduktase (Psr) auf dessen dem Periplasma zugewandten Seite befindet. Dabei wird eine reduktive Spaltung der Kette katalysiert. Die Lösungsstruktur des Homodimeres Sud wurde mit Hilfe heteronuklearer, mehrdimensionaler NMR-Techniken bestimmt. Die Struktur beruht auf von NOESY-Spektren abgeleiteten Distanzbeschränkungen, Rückgratwasserstoffbindungen und Torsionswinkeln, sowie auf residuellen dipolaren Kopplungen, die für die Verfeinerung der Struktur und für die relative Orientierung der Monomereinheiten wichtig waren. In den NMR Spektren der Homodimere haben alle symmetrieverwandte Kerne äquivalente magnetische Umgebungen, weshalb ihre chemischen Verschiebungen entartet sind. Die symmetrische Entartung vereinfacht das Problem der Resonanzzuordnung, da nur die Hälfte der Kerne zugeordnet werden müssen. Die NOESY-Zuordnung und die Strukturrechnung werden dadurch erschwert, dass es nicht möglich ist, zwischen den Intra-Monomer-, Inter-Monomer- und Co-Monomer- (gemischten) NOESY-Signalen zu unterscheiden. Um das Problem der Symmetrie-Entartung der NOESY-Daten zu lösen, stehen zwei Möglichkeiten zur Verfügung: (I) asymmetrische Markierungs-Experimente, um die intra- von den intermolekularen NOESY-Signalen zu unterscheiden, (II) spezielle Methoden der Strukturrechnung, die mit mehrdeutigen Distanzbeschränkungen arbeiten können. Die in dieser Arbeit vorgestellte Struktur wurde mit Hilfe der Symmetrie-ADR- ('Ambigous Distance Restraints') Methode in Kombination mit Daten von asymetrisch isotopenmarkierten Dimeren berechnet. Die Koordinaten des Sud-Dimers zusammen mit den NMR-basierten Strukturdaten wur- den in der RCSB-Proteindatenbank unter der PDB-Nummer 1QXN abgelegt. Das Sud-Protein zeigt nur wenig Homologie zur Primärsequenz anderer Proteine mit ähnlicher Funktion und bekannter dreidimensionaler Struktur. Bekannte Proteine sind die Schwefeltransferase oder das Rhodanese-Enzym, welche beide den Transfer von einem Schwefelatom eines passenden Donors auf den nukleophilen Akzeptor (z.B von Thiosulfat auf Cyanid) katalysieren. Die dreidimensionalen Strukturen dieser Proteine zeigen eine typische a=b Topologie und haben eine ähnliche Umgebung im aktiven Zentrum bezüglich der Konformation des Proteinrückgrades. Die Schleife im aktiven Zentrum umgibt das katalytische Cystein, welches in allen Rhodanese-Enzymen vorhanden ist, und scheint im Sud-Protein flexibel zu sein (fehlende Resonanzzuordnung der Aminosäuren 89-94). Das Polysulfidende ragt aus einer positiv geladenen Bindungstasche heraus (Reste: R46, R67, K90, R94), wo Sud wahrscheinlich in Kontakt mit der Polysulfidreduktase tritt. Das strukturelle Ergebnis wurde durch Mutageneseexperimente bestätigt. In diesen Experimenten konnte gezeigt werden, dass alle Aminosäurereste im aktiven Zentrum essentiell für die Schwefeltransferase-Aktivität des Sud-Proteins sind. Die Substratbindung wurde früher durch den Vergleich von [15N,1H]-TROSY-HSQC-Spektren des Sud-Proteins in An- und Abwesenheit des Polysulfidliganden untersucht. Bei der Substratbindung scheint sich die lokale Geometrie der Polysulfidbindungsstelle und der Dimerschnittstelle zu verändern. Die konformationellen Änderungen und die langsame Dynamik, hervorgerufen durch die Ligandbindung können die weitere Polysulfid-Schwefel-Aktivität auslösen. Ein zweites Polysulfid-Schwefeltransferaseprotein (Str, 40 kDa) mit einer fünffach höheren nativen Konzentration im Vergleich zu Sud wurde im Bakterienperiplasma von Wolinella succinogenes entdeckt. Es wird angenommen, dass beide Protein einen Polysulfid-Schwefel-Komplex bilden, wobei Str wässriges Polysulfid sammelt und an Sud abgibt, welches den Schwefeltransfer zum katalytischen Molybdän-Ion auf das aktive Zentrum der dem Periplasma zugewandten Seite der Polysulfidreduktase durchführt. Änderungen chemischer Verschiebungen in [15N,1H]-TROSY-HSQC-Spektren zeigen, dass ein Polysulfid-Schwefeltransfer zwischen Str und Sud stattfindet. Eine mögliche Protein-Protein-Wechselwirkungsfläche konnte bestimmt werden. In der Abwesenheit des Polysulfidsubstrates wurden keine Wechselwirkungen zwischen Sud und Str beobachtet, was die Vermutung bestätigt, dass beide Proteine nur dann miteinander wechselwirken und den Polysulfid-Schwefeltransfer ermöglichen, wenn als treibende Kraft Polysulfid präsent ist.
This dissertation study argues that 'policy advice formation', as a discourse development, is a differentiated hybrid resultant from merger between comparative education and policy studies disciplines. Through discourse analysis based on John Creswell's format, this study identifies revisions, restatements and shifts in emphasis of theories, methodological models and challenge topics of comparative education and policy studies. Findings which display the development of policy advice formation' discourse. In conclusion, this study found differential patterns seemingly formed because of collaborative affects of standardization in education science knowledge expressed within discourse.