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Metasomatic evolution of coesite-bearing diamondiferous eclogite from the Udachnaya Kimberlite
(2020)
A coesite-bearing diamondiferous eclogite from the Udachnaya kimberlite (Daldyn field, Siberian craton) has been studied to trace its complex evolution recorded in rock-forming and minor mineral constituents. The eclogite sample is composed of rock-forming omphacite (60 vol%), garnet (35 vol%) and quartz/coesite (5 vol%) and contains intergranular euhedral zoned olivine crystals, up to 200 µm long, coexisting with phlogopite, orthopyroxene, clinopyroxene (secondary), K-feldspar, plagioclase, spinel, sodalite and djerfisherite. Garnet grains are zoned, with a relatively homogeneous core and a more magnesian overgrowth rim. The rim zones further differ from the core in having higher Zr/Y (6 times that in the cores), ascribed to interaction with, or precipitation from, a kimberlite-related melt. Judging by pressure-temperature estimates (~1200 °C; 6.2 GPa), the xenolith originated at depths of ~180–200 km at the base of the continental lithosphere. The spatial coexistence of olivine, orthopyroxene and coesite/quartz with K-Na-Cl minerals in the xenolith indicates that eclogite reacted with a deep-seated kimberlite melt. However, Fe-rich olivine, orthopyroxene and low-pressure minerals (sodalite and djerfisherite) likely result from metasomatic reaction at shallower depths during transport of the eclogite by the erupting kimberlite melt. Our results demonstrate that a mixed eclogitic-peridotitic paragenesis, reported previously from inclusions in diamond, can form by interaction of eclogite and a kimberlite-related melt.
Cyanobacteria are photoautotrophic microorganisms present in almost all ecologically niches on Earth. They exist as single-cell or filamentous forms and the latter often contain specialized cells for N2 fixation known as heterocysts. Heterocysts arise from photosynthetic active vegetative cells by multiple morphological and physiological rearrangements including the absence of O2 evolution and CO2 fixation. The key function of this cell type is carried out by the metalloprotein complex known as nitrogenase. Additionally, many other important processes in heterocysts also depend on metalloproteins. This leads to a high metal demand exceeding the one of other bacteria in content and concentration during heterocyst development and in mature heterocysts. This review provides an overview on the current knowledge of the transition metals and metalloproteins required by heterocysts in heterocyst-forming cyanobacteria. It discusses the molecular, physiological, and physicochemical properties of metalloproteins involved in N2 fixation, H2 metabolism, electron transport chains, oxidative stress management, storage, energy metabolism, and metabolic networks in the diazotrophic filament. This provides a detailed and comprehensive picture on the heterocyst demands for Fe, Cu, Mo, Ni, Mn, V, and Zn as cofactors for metalloproteins and highlights the importance of such metalloproteins for the biology of cyanobacterial heterocysts.
Metal-ion binding and metal-ion induced folding of the adenine-sensing riboswitch aptamer domain
(2007)
Divalent cations are important in the folding and stabilization of complex RNA structures. The adenine-sensing riboswitch controls the expression of mRNAs for proteins involved in purine metabolism by directly sensing intracellular adenine levels. Adenine binds with high affinity and specificity to the ligand binding or aptamer domain of the adenine-sensing riboswitch. The X-ray structure of this domain in complex with adenine revealed an intricate RNA-fold consisting of a three-helix junction stabilized by long-range base-pairing interactions and identified five binding sites for hexahydrated Mg2+-ions. Furthermore, a role for Mg2+-ions in the ligand-induced folding of this RNA was suggested. Here, we describe the interaction of divalent cations with the RNA–adenine complex in solution as studied by high-resolution NMR spectroscopy. Paramagnetic line broadening, chemical shift mapping and intermolecular nuclear Overhauser effects (NOEs) indicate the presence of at least three binding sites for divalent cations. Two of them are similar to those in the X-ray structure. The third site, which is important for the folding of this RNA, has not been observed previously. The ligand-free state of the RNA is conformationally heterogeneous and contains base-pairing patterns detrimental to ligand binding in the absence of Mg2+, but becomes partially pre-organized for ligand binding in the presence of Mg2+. Compared to the highly similar guanine-sensing riboswitch, the folding pathway for the adenine-sensing riboswitch aptamer domain is more complex and the influence of Mg2+ is more pronounced.
Metal ions as novel polarizing agents for dynamic nuclear polarization enhanced NMR spectroscopy
(2017)
High-spin complexes of Gd(III) and Mn(II) were introduced as polarizing agents (PAs) for solid-state dynamic nuclear polarization (DNP) in 2011. This dissertation was undertaken in 2013, with the intention of exploring these PAs further. Major goals of this work were to understand their DNP mechanism(s) and explore their application in biomolecular research. This cumulative thesis details the methods, advantages, and practical implications of using high-spin PAs for MAS DNP. Data from electron paramagnetic resonance (EPR) and NMR spectroscopy are discussed for a complete understanding of DNP mechanisms.
Out of the two main mechanisms − solid effect (SE) and cross effect (CE − active under experimental conditions of solid-state DNP, commonly used nitroxide PAs evoke CE owing to their broad EPR spectra. On the other hand, DNP mechanisms evoked by high-spin metal ions seem non-trivial due to additional features (originating from spin-orbit coupling or zero field splitting) in their EPR spectra. The features of the EPR signal generally influence the shape of enhancement profiles. Therefore, the metal ion with a simpler EPR signal i.e., Gd(III) , is chosen as the starting point for the investigation of DNP mechanisms. Varying concentrations (2, 10, 20 mM) of a water-soluble and stable complex Gd-DOTA was dissolved as the PA in a glycerol-water solution of 13C,15N - urea. Field profiles of DNP enhancement on each nuclear type (1H, 13C, and 15N) establishes SE as the active DNP mechanism at the smallest PA concentration (2 mM). This confirms the theoretical predictions that narrow line width of the Gd(III) EPR signal arising from the central transition (CT, ms = -1/2 +1/2) allows for resolved SE DNP. However, that is no longer the case at higher PA concentrations of 10 and 20 mM. At higher Gd(III) concentrations, the CE mechanism contributes significantly and varies with nuclear Larmor frequency (ωn) of the concerned nuclei. The enhancement maxima shifts towards the EPR resonance as the contribution from CE increases. This shift is evident in the field profiles of 15N and 13C, whereas that of 1H is least influenced. This observation can be explained by combining theoretical estimates with the experimental data; the CE is evoked by increased dipolar coupling (Dee) – a prerequisite for CE – between neighboring Gd(III) spins as the statistical inter-spin distance shortens at elevated concentrations. This finding is important because the knowledge of active DNP mechanisms is essential for accurate interpretation of results from DNP experiments.
From the experiments on Gd-DOTA it becomes clear that concentration, inter-spin distances, and hence induced Dee are intertwined. In order to explicitly address the influence of inter-spin distances on DNP mechanisms we started a collaboration with the group of Adelheid Godt (Bielefeld). In this collaborative project, bis-complexes of the type Gd(III)-spacer-Gd(III) with variable spacer lengths were investigated. These PAs provided an excellent model system where the influence of only inter-spin distances can be determined for a fixed Gd(III) concentration. A small PA concentration of 4 mM is used to ensure absence of significant inter-molecular dipolar interactions. A mono-Gd complex of similar geometry and chemistry is taken as a reference for SE DNP.
The mono-Gd complex yields enhancements arising from SE as expected from negligible inter-molecular Dee. The contribution of CE increases as the inter-spin distances between Gd(III) ions become shorter going from 3.4 nm 2.1 nm 1.4 nm 1.2 nm due to corresponding increase in Dee. The extent of CE on ωn follows the same trend as for Gd-DOTA. Highest CE contribution is observed on nuclei with the smallest ωn 15N because smaller ωn approaches the width of the EPR signal, this is an additional requirement for CE DNP.
The field position for maximum DNP enhancement corresponding to Gd-DOTA, is used for DNP experiments on Ubiquitin with an attached Gd-tag as PA. The success of DNP on this sample illustrates the possibility of site-directed DNP with metal ions tags as PAs. As a perspective Gd-tags can be used to examine change in conformation of a protein that would give higher enhancements due to CE if two Gd(III) labeled domains are closer in space. In a separate project, Mn(II) (s=5/2) bound to the divalent site of a hammerhead ribozyme was used as a PA which resulted in the first demonstration of intra-complex DNP using an intrinsically bound metal ion PA.
Research on Bronze Age weapons from wet contexts in northern Europe often interprets those finds as structured deposits of a symbolic nature, placed in liminal environments that had special significance in social and religious terms. Much less consideration is given to direct or indirect connections with war and conflict in the competitive chiefdom polities of the Bronze Age. As territorial boundaries, rivers were obvious settings for conflict, with confrontations at fording points leading to weapon loss in battle. There may also have been intentional deposition connected to the death of a warrior at or near that location. River deposition may also signify the celebration of a military victory, involving a ritualized destruction of the weapons of the vanquished. They may also represent an assertion of territory or an expression of ritualized violence. Such scenarios illustrate how the use of weapons as funerary or votive offerings does not preclude a close association with warfare. The parallel phenomenon of hoarding in the same period may reflect a political climate in which it was necessary to hide valuables. This paper explores possible connections between the deposition of weapons and valuables in wet contexts and the landscape context of war in Ireland during the later Bronze Age, with implications for research in other parts of Europe.
Metahumans ist ein innovatives Framework für die Unreal Engine, das hochgradig realistische digitale Charaktere zur Verfügung stellt. Metahumans zeichnen sich durch eine vollständige Control Rig aus, die es Entwicklern ermöglicht, vorgefertigte Animationen zu nutzen und sie nach Bedarf anzupassen und zu erweitern.
Im Rahmen dieser wissenschaftlichen Arbeit wird die Anwendung von Metahumans in der virtuellen Umgebung der Unreal Engine 5 untersucht. Das Hauptziel besteht darin, die Fähigkeit eines Metahumans zu untersuchen, mittels eines herkömmlichen Virtual Reality Headsets mithilfe von Motion Tracking gesteuert und animiert zu werden. Dabei wird speziell auf die Verwendung von Inverse Kinematics als Methode zur Erzeugung möglichst natürlicher Bewegungsabläufe eingegangen. Zusätzlich wird angestrebt, die Interaktion zwischen verschiedenen Metahuman-Avataren in einer Online-Sitzung zu ermöglichen.
Um den Einfluss auf das Immersionserlebnis der Benutzerinnen und Benutzer zu analysieren, werden Probandinnen und Probanden eingeladen, ihre Nutzererfahrungen zu evaluieren. Zu diesem Zweck werden zwei vergleichbare Level erstellt: eines in der Unreal Engine mit Metahumans und das andere in Unity mit den Meta Avataren von Oculus.
Diese wissenschaftliche Untersuchung zielt darauf ab, ein umfassendes Verständnis für die Leistungsfähigkeit von Metahumans zu erlangen, insbesondere im Vergleich zu anderen Avatar-Systemen.
El propósito de este ensayo es recorrer algunos de los secretos hilos que sitúan a Kant y a Adorno de un mismo lado en la pugna filosófica contemporánea. En el ensayo se trata de hacer patente cómo la “utopía de conocimiento” para Adorno supone, en el fondo, una reactualización de la idea de Kant de que las intuiciones sin conceptos son ciegas y los conceptos sin intuiciones son vacíos. Ello implica que tanto Kant como Adorno pretenden hallar un difícil equilibrio al mismo tiempo entre una objetividad que no olvide el papel activo del sujeto y una subjetividad que no agote en sí, al modo idealista postkantiano, la realidad del objeto.
Trypanosoma cruzi, the causative agent of Chagas disease (American trypanosomiasis), colonizes the intestinal tract of triatomines. Triatomine bugs act as vectors in the life cycle of the parasite and transmit infective parasite stages to animals and humans. Contact of the vector with T. cruzi alters its intestinal microbial composition, which may also affect the associated metabolic patterns of the insect. Earlier studies suggest that the complexity of the triatomine fecal metabolome may play a role in vector competence for different T. cruzi strains. Using high-resolution mass spectrometry and supervised machine learning, we aimed to detect differences in the intestinal metabolome of the triatomine Rhodnius prolixus and predict whether the insect had been exposed to T. cruzi or not based solely upon their metabolic profile. We were able to predict the exposure status of R. prolixus to T. cruzi with accuracies of 93.6%, 94.2% and 91.8% using logistic regression, a random forest classifier and a gradient boosting machine model, respectively. We extracted the most important features in producing the models and identified the major metabolites which assist in positive classification. This work highlights the complex interactions between triatomine vector and parasite including effects on the metabolic signature of the insect.
Alzheimer's disease (AD) is a neurodegenerative disorder characterized by progressive loss of cognitive functions. Today the diagnosis of AD relies on clinical evaluations and is only late in the disease. Biomarkers for early detection of the underlying neuropathological changes are still lacking and the biochemical pathways leading to the disease are still not completely understood. The aim of this study was to identify the metabolic changes resulting from the disease phenotype by a thorough and systematic metabolite profiling approach. For this purpose CSF samples from 79 AD patients and 51 healthy controls were analyzed by gas and liquid chromatography-tandem mass spectrometry (GC-MS and LC-MS/MS) in conjunction with univariate and multivariate statistical analyses. In total 343 different analytes have been identified. Significant changes in the metabolite profile of AD patients compared to healthy controls have been identified. Increased cortisol levels seemed to be related to the progression of AD and have been detected in more severe forms of AD. Increased cysteine associated with decreased uridine was the best paired combination to identify light AD (MMSE>22) with specificity and sensitivity above 75%. In this group of patients, sensitivity and specificity above 80% were obtained for several combinations of three to five metabolites, including cortisol and various amino acids, in addition to cysteine and uridine.