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Maryam Jafri – "Staged Archive" : die Studiengalerie 1.357 kooperiert mit dem Deutschen Filmmuseum
(2014)
Zubin Mehta mit Fledermaus im Gepäck : Geburtstags-Konzert in der Alten Oper begeistert Publikum
(2014)
Africa meets Frankfurt
(2012)
Nikolaus List spinnt in seiner neuen Glosse wieder allerlei Themen kunstvoll zusammen: Joe Graf Fÿtty und Ronald MacDonald erklären Andy Warhols inklusive Kunst und Jan Vermeers Zwischenräume. Nebenbei erfahren wir, was der Big Mac mit Kunst zu tun hat – und auch die New Yorker Polizei darf nicht fehlen.
Background: Drugs used to treat gastrointestinal diseases (GI drugs) are widely used either as prescription or over23 the-counter (OTC) medications and belong to both the ten most prescribed and ten most sold OTC medications worldwide. Current clinical practice shows that in many cases, these drugs are administered concomitantly with other drug products. Due to their metabolic properties and mechanisms of action, the drugs used to treat gastrointestinal diseases can change the pharmacokinetics of some co27 administered drugs. In certain cases, these interactions can lead to failure of treatment or to the occurrence of serious adverse events. The mechanism of interaction depends highly on drug properties and differs among therapeutic categories. Understanding these interactions is essential to providing recommendations for optimal drug therapy.
Objective: To discuss the most frequent interactions between GI and other drugs, including identification of the mechanisms behind these interactions, where possible.
Conclusion: Interactions with GI drugs are numerous and can be highly significant clinically. Whilst alterations in bioavailability due to changes in solubility, dissolution rate and metabolic interactions can be (for the most part) easily identified, interactions that are mediated through other mechanisms, such as permeability or microbiota, are less well understood. Future work should focus on characterizing these aspects.
Introduction: When developing bio-enabling formulations, innovative tools are required to understand and predict in vivo performance and may facilitate approval by regulatory authorities. EMEND® is an example of such a formulation, in which the active pharmaceutical ingredient, aprepitant, is nano-sized. The aims of this study were 1) to characterize the 80 mg and 125 mg EMEND® capsules in vitro using biorelevant tools, 2) to develop and parameterize a physiologically based pharmacokinetic (PBPK) model to simulate and better understand the in vivo performance of EMEND® capsules and 3) to assess which parameters primarily influence the in vivo performance of this formulation across the therapeutic dose range.
Methods: Solubility, dissolution and transfer experiments were performed in various biorelevant media simulating the fasted and fed state environment in the gastrointestinal tract. An in silico PBPK model for healthy volunteers was developed in the Simcyp Simulator, informed by the in vitro results and data available from the literature.
Results: In vitro experiments indicated a large effect of native surfactants on the solubility of aprepitant. Coupling the in vitro results with the PBPK model led to an appropriate simulation of aprepitant plasma concentrations after administration of 80 mg and 125 mg EMEND® capsules in both the fasted and fed states. Parameter Sensitivity Analysis (PSA) was conducted to investigate the effect of several parameters on the in vivo performance of EMEND®. While nano-sizing aprepitant improves its in vivo performance, intestinal solubility remains a barrier to its bioavailability and thus aprepitant should be classified as DCS IIb.
Conclusions: The present study underlines the importance of combining in vitro and in silico biopharmaceutical tools to understand and predict the absorption of this poorly soluble compound from an enabling formulation. The approach can be applied to other poorly soluble compounds to support rational formulation design and to facilitate regulatory assessment of the bio-performance of enabling formulations.
Purpose: The design of biorelevant conditions for in vitro evaluation of orally administered drug products is contingent on obtaining accurate values for physiologically relevant parameters such as pH, buffer capacity and bile salt concentrations in upper gastrointestinal fluids.
Methods: The impact of sample handling on the measurement of pH and buffer capacity of aspirates from the upper gastrointestinal tract was evaluated, with a focus on centrifugation and freeze-thaw cycling as factors that can influence results. Since bicarbonate is a key buffer system in the fasted state and is used to represent conditions in the upper intestine in vitro, variations on sample handling were also investigated for bicarbonate-based buffers prepared in the laboratory.
Results: Centrifugation and freezing significantly increase pH and decrease buffer capacity in samples obtained by aspiration from the upper gastrointestinal tract in the fasted state and in bicarbonate buffers prepared in vitro. Comparison of data suggested that the buffer system in the small intestine does not derive exclusively from bicarbonates.
Conclusions: Measurement of both pH and buffer capacity immediately after aspiration are strongly recommended as “best practice” and should be adopted as the standard procedure for measuring pH and buffer capacity in aspirates from the gastrointestinal tract. Only data obtained in this way provide a valid basis for setting the physiological parameters in physiologically based pharmacokinetic models.
Introduction: In the development of bio-enabling formulations, innovative in vivo predictive tools to understand and predict the in vivo performance of such formulations are needed. Etravirine, a non-nucleoside reverse transcriptase inhibitor, is currently marketed as an amorphous solid dispersion (Intelence® tablets). The aims of this study were 1) to investigate and discuss the advantages of using biorelevant in vitro setups in simulating the in vivo performance of Intelence® 100 mg and 200 mg tablets, in the fed state, 2) to build a Physiologically Based Pharmacokinetic (PBPK) model by combining experimental data and literature information with the commercially available in silico software Simcyp® Simulator V17.1 (Certara UK Ltd.), and 3) to discuss the challenges when predicting the in vivo performance of an amorphous solid dispersion and identify the parameters which influence the pharmacokinetics of etravirine most.
Methods: Solubility, dissolution and transfer experiments were performed in various biorelevant media simulating the fasted and fed state environment in the gastrointestinal tract. An in silico PBPK model for healthy volunteers was developed in the Simcyp® Simulator, using in vitro results and data available from the literature as input. The impact of pre- and post-absorptive parameters on the pharmacokinetics of etravirine was investigated using simulations of various scenarios.
Results: In vitro experiments indicated a large effect of naturally occurring solubilizing agents on the solubility of etravirine. Interestingly, supersaturated concentrations of etravirine were observed over the entire duration of dissolution experiments on Intelence® tablets. Coupling the in vitro results with the PBPK model provided the opportunity to investigate two possible absorption scenarios, i.e. with or without implementation of precipitation. The results from the simulations suggested that a scenario in which etravirine does not precipitate is more representative of the in vivo data. On the post-absorptive side, it appears that the concentration dependency of the unbound fraction of etravirine in plasma has a significant effect on etravirine pharmacokinetics.
Conclusions: The present study underlines the importance of combining in vitro and in silico biopharmaceutical tools to advance our knowledge in the field of bio-enabling formulations. Future studies on other bio-enabling formulations can be used to further explore this approach to support rational formulation design as well as robust prediction of clinical outcomes.
Die Forschung beschrieben in dieser Dissertation ist ein Teil der "European Research and Innovation Programme - PEARRL", und wurde von Horizon 2020 Marie Sklodowska-Curie actions der Europäischen Union, unter Förderungsnummer 674909 unterstützt.
In den letzten Jahren, wurde Senkung der Intensität der pharmazeutischen Forschung und Entwicklung beobachtet, da die Weiterentwicklung der Wirkstoffmolekülen hinzu einer "handlichen" Formulierung viele Schwierigkeiten aufweist. Meiste der neuen Wirkstoffkandidaten, die sich in Entwicklung befinden, haben suboptimale Eigenschaften in Bezug zur Löslichkeit und Auflösung und zeigen schlechte Bioverfügbarkeit, wenn eingenommen. Deswegen verlangen meiste neue Wirkstoffkandidate einen besonderen Ansatz in Bezug auf Formulierung, um akzeptable orale Bioverfügbarkeit zu erreichen. Diese neue Formulierungen werden meistens als “bio-enabling” Formulierungen bezeichnet und werden in Heilmittelentwicklung immer häufiger verwendet.
Hauptziel dieser Dissertation ist zu erforschen ob, durch Verbinden von biorelevanten in vitro Werkzeugen mit in silico Modeling und Simulationen, die in vitro Löslichkeit und Auflösung von bio-enabling Formulierungen mechanistisch erkläert und besser verstanden werden kann und somit eine erfolgreiche Simulation von in vivo Leistung erreicht werden kann.
Als Erstes wurden die physiologische Parameter, die die pharmakokinetik oraler Formulierungen beeinflüssen, identifiziert, indem die Auswirkung der Wirkstoffe, die zur Behandlung Magen-Darm-Krankheiten genutzt werden, sowie deren Pharmakokinetik, beurteilt wurde. Unter anderem wurde pH als einer der entscheinenden phyisiologischen Parameter erkannt, da es die Pharmakokinetik peroral verabreichter Stoffe signifikant beeinflüssen kann.
Als zweiter Schritt, mit besonderer Beachtung auf die Verwendung der biorelevanten in vitro Werkzeugen für die Erforschung der in vivo Auflösungsprozesse von bio-enabling Formulierungen, Fokus auf die biorelevante Medien und in vitro Apparaturen, die mögliche Prezipitationskinetik einschätzen können, wurde gesetzt. Biorelevante Medien sind wässrige Flüssigkeiten, die die Zusammensetzung der gastrointestinaler Flüssigkeiten nachmachen und für die Auflösungsuntersuchungen genutzt werden. Bis heute beinhalten die Aspirationsstudien die wichtigsten Hinweise und Informationen für den Design biorelevanter Medien. Es wurde beobachtet, dass die berichteten Werte mancher phyisiologisher Parameter erhebliche Unterschiede zwischen den Aspirationsstudien zeigen. Deswegen wurde untersucht, ob die Ergebnisse durch die Auswahl an Methodologie, die für die Entnahme und die Auswertung der Proben genutzt worden sind, beeinflusst werden können, wobei besondere Aufmerksamkeit den pH und der Pufferkapazität geschenkt wurde. Es wurde gezeigt, dass Unterschiede im Prozess der Probenhandhabung, z.B. Zentrifugieren und Lagerung einen deutlichen Einfluss auf die gemessenen Werte haben kann. Ausserdem, wurden in dieser Arbeit die in vitro Setups, die bisher in der Literatur zur Beurteilung der Übersättigung u.o. Ausfällung von Arzneimitteln im oberen Magen-Darm-Trakt vorgeschlagen wurden, überprüft und ihre Nützlichkeit und aktuelle Anwendung bewertet.
Nach Behebung der oben genannten Probleme, wurden zwei Fallbeispielformulierungen ausgewählt, um die Haupthypothese zu untersuchen. Die erste Formulierung ist auf den Markt unter dem Namen EMEND® und enthält den Wirkstoff in Nanoform. Die zweite Formulierung wird als INTELENCE® vermarktet und ist eine amorphe feste Dispersion des Wirkstoffs Etravirin. Durch die Wahl zwei unterschiedlicher Formulierungsansätzen konnten unterschiedliche Fallszenarien untersucht werden, wodurch umfassendere Vorschläge für die Bewältigung der Herausforderungen bei in vitro Experimenten und in silico Modelling mit bio-enabling Formulierungen möglich waren.
Bezogen auf den in dieser Dissertation beschriebenen Ansatz, ein mechanistisches Verständnis des in vivo Absorptionsprozesses, sowie eine erfolgreiche Simulation der nach der Verabreichung resultierenden Plasmaprofile einer bio-enabling-Formulierung der Nanoskala- und einer amorphen festen Dispersion wurde erreicht. Darüber hinaus wurden mögliche Wege vorgeschlagen, um einige Herausforderungen im Hinblick auf die Entwicklung von PBPK-Modellen für biofähige Formulierungen anzugehen. Diese Arbeit zeigt die mögliche Anwendung und Bedeutung der Absorptionsmodellierung für die rationale Formulierungsentwicklung und für die Stärkung des Wissens über Bio-Heilmittel in Bezug auf bio-enabling Formulierungen. Mithilfe dieses Ansatzes können die wesentlichen Parameter identifiziert werden, die das pharmakokinetische Verhalten schwerlöslicher Wirkstoffe beeinflussen, die als bio-enabling Formulierungen formuliert sind, und ermöglichen wiederum eine robuste Vorhersage der klinischen Ergebnisse.
Im folgenden Paper wird die Konzeption des Stakeholder-Involvements für das BiKF-Projekt "Wald- und Forstsysteme der Zukunft" zusammenfassend dargestellt. In Zeiten der Diskussion um Art und Ausmaß der Klimaerwärmung ist es auch in der Forstwirtschaft an der Zeit, sich auf mögliche neue Verhältnisse einzustellen. Dies betrifft vor allem das waldbauliche Vorgehen. Je nach Intensität des Klimawandels müssen neue Konzepte entwickelt werden. Das Projekt hat sich zum Ziel gesetzt, zusammen mit Stakeholdern (Anspruchsgruppen) des Waldes naturwissenschaftliche Szenarien zu bewerten und daraus Handlungsempfehlungen abzuleiten. Ausgehend von dieser Forschungsfrage wurde in der ersten Phase dieses Projektes ein Stakeholder-Workshop (WS) durchgeführt. Bei diesem Workshop sollten Themenfelder und aufbauend auf einem Impulsreferat weiterführende Diskussionsfelder erarbeitet werden. Der Auswahl der Stakeholder ging eine Diskursfeldanalyse voraus, aus der eine vorläufige Liste möglicher Anspruchsgruppen abgeleitet wurde. Eine hessenbezogene Auswahl von Repräsentanten dieser Stakeholder wurde über das Forschungsvorhaben informiert und eingeladen. Die meisten der Eingeladenen kamen zum Workshop am 2. Februar 2010. Verschiedene Referate zu den Themen Baumartenwahl und Entscheiden unter Unsicherheit wurden gehalten und das erarbeitete Szenario vorgestellt. Darüber hinaus wurden zwei moderierte Arbeitsgruppen zu verschiedenen Aspekten des Szenarios eingerichtet und Platz für Diskussionen vorgesehen. ...
Signal transducer and activator of transcription 5 (STAT5) is a transcription factor that activates prolactin (PRL)-dependent gene expression in the mammary gland. For the activation of its target genes, STAT5 recruits coactivators like p300 and the CREB-binding protein (CBP). In this study we analyzed the function of p300/CBP-associated members of the p160/SRC/NCoA-family in STAT5-mediated transactivation of β-casein expression. We found that only one of them, NCoA-1, acts as a coactivator for both STAT5a and STAT5b. The two coactivators p300/CBP and NCoA-1 cooperatively enhance STAT5a-mediated transactivation. For NCoA-1-dependent coactivation of STAT5, both the activation domain 1 and the amino-terminal bHLH/PAS domain are required. The amino-terminal region mediates the interaction with STAT5a in cells. A motif of three amino acids in an α-helical region of the STAT5a-transactivation domain is essential for the binding of NCoA-1 and for the transcriptional activity of STAT5a. Moreover we observed that NCoA-1 is involved in the synergistic action of the glucocorticoid receptor and STAT5a on the β-casein promoter. These findings support a model in which STAT5, in concert with the glucocorticoid receptor, recruits a multifunctional coactivator complex to initiate the PRL-dependent transcription.
Signal transducer and activator of transcription 6 (STAT6) is a transcription factor that is activated by interleukin-4 (IL-4)-induced tyrosine phosphorylation and mediates most of the IL-4-induced gene expression. Transcriptional activation by STAT6 requires the interaction with coactivators like p300 and the CREB-binding protein (CBP). In this study we have investigated the function of the CBP-associated members of the p160/steroid receptor coactivator family in the transcriptional activation by STAT6. We found that only one of them, NCoA-1, acts as a coactivator for STAT6 and interacts directly with the transactivation domain of STAT6. The N-terminal part of NCoA-1 interacts with the far C-terminal part of the STAT6 transactivation domain but does not interact with the other members of the STAT family. This domain of NCoA-1 has a strong inhibitory effect on STAT6-mediated transactivation when overexpressed in cells, illustrating the importance of NCoA-1 for STAT6-mediated transactivation. In addition, we showed that both coactivators CBP and NCoA-1 bind independently to specific regions within the STAT6 transactivation domain. Our results suggest that multiple contacts between NCoA-1, CBP, and STAT6 are required for transcriptional activation. These findings provide new mechanistic insights into how STAT6 can recruit coactivators required for IL-4-dependent transactivation.
Signal transducer and activator of transcription 6 (STAT6) regulates transcriptional activation in response to interleukin-4 (IL-4)-induced tyrosine phosphorylation by direct interaction with coactivators. The CREB-binding protein and the nuclear coactivator 1 (NCoA-1), a member of the p160/steroid receptor coactivator family, bind independently to specific regions of STAT6 and act as coactivators. In this study we show that an LXXLL motif in the STAT6 transactivation domain mediates the interaction with NCoA-1. Peptides representing this motif as well as antibodies generated against this motif inhibited STAT6/NCoA-1 interaction in glutathione S-transferase pulldown assays. Peptides derived from the STAT6 transactivation domain adjacent to the LXXLL motif as well as antibodies against these peptides showed no inhibitory effect. Mutagenesis of the LXXLL motif eliminated the STAT6/NCoA-1 interaction in vitro and in vivo, supporting the specific role of this motif in NCoA-1 binding. Importantly, mutagenesis of the STAT-LXXLL motif strongly diminished the IL-4-regulated activation of the endogenous STAT6 target gene eotaxin-3. Taken together, these results indicate that the STAT6-LXXLL-binding motif mediates the interaction with NCoA-1 in transcriptional activation and represents a new potential drug target for the inhibition of the STAT6 transactivation function in allergic diseases.
1. Das Wachstum und die Fähigkeit zur Butyratproduktion von E. callanderi KIST612 wurde in geschlossenen Batch-Kulturen mit den Substraten Glukose, Methanol, Formiat, H2 + CO2 und CO untersucht. E. callanderi KIST612 zeigte sich nur bei Wachstum auf 20 mM Glukose oder 20 mM Methanol in der Lage, Butyrat in größeren Mengen (3,7 – 4,3 mM) zu produzieren. Das Hauptprodukt bei allen untersuchten Wachstumssubstraten war jedoch Acetat.
2. In bioinformatischen Analysen des Genoms von E. callanderi KIST612 konnte nur eine A1AO-ATP-Synthase gefunden werden, welche eine V-typ c-Untereinheit bestehend aus 4 TMH‘s mit nur einer Na+-Bindestelle aufweist. Diese konnte aus gewaschenen Membranen von E. callanderi durch Saccharose-Dichtegradientenzentrifugation, Anionenaustausch-Chromatographie (DEAE) sowie einer Größenausschluss-Chromatographie (Superose 6) bis zur apparenten Homogenität gereinigt werden. Nach Produktion einzelner Untereinheiten (A, B, C, D, E, F und H) in E. coli und Generierung von Antikörpern, konnten alle Untereinheiten (A, B, C, D, E, F, H, a sowie c) in der gereinigten Enzympräparation immunologisch oder mittels „Peptide-Mass-Fingerprinting“ nachgewiesen werden. Es konnte somit erstmals eine A1AO-ATP-Synthase aus einem mesophilen Organismus ohne Verlust von Untereinheiten gereinigt werden.
3. Der Gesamtkomplex wies unter nativen Bedingungen eine molekulare Masse von ca. 670 kDa auf. In elektronenmikroskopischen Aufnahmen zeigte sich anhand der hantelförmigen Strukturen, dass die A1AO-ATP-Synthase als intakter Gesamtkomplex gereinigt werden konnte.
4. Die gereinigte A1AO-ATP-Synthase wurde zunächst anhand ihrer ATP-Hydrolyse-Aktivität biochemisch charakterisiert. Die ATP-Hydrolyse-Aktivität hatte ein pH-Optimum von 7 – 7,5 und ein Temperaturoptimum bei 37 °C. Durch Messung der ATPase-Aktivität in Abhängigkeit von verschiedenen Mengen an Na+ konnte die vorhergesagte Na+-Abhängigkeit des Enzyms nachgewiesen werden. Zudem zeigten Hemmstoffexperimente mit DCCD, dass dieser Inhibitor mit Na+ um die gemeinsame Bindestelle in der c-Untereinheit konkurriert. Dies bestätigte nochmals, dass das Enzym funktionell gekoppelt gereinigt werden konnte.
5. Zur weiteren Untersuchung der Ionenspezifität wurde der an die ATP-Hydrolyse gekoppelte Ionentransport durch Rekonstitution des Enzyms in Liposomen und anschließender Messung des Na+- oder H+-Transports gemessen. In den Proteoliposomen konnte mit Hilfe von 22Na+ gezeigt werden, dass das Enzym Natriumionen translozieren kann. Während in Anwesenheit des Natriumionophors ETH 2120 kein 22Na+-Transport beobachtet werden konnte, führte die Anwesenheit des Protonophors TCS zu einer geringfügigen Stimulation der 22Na+-Translokation. Insgesamt konnte ein primärer Na+-Transport nachgewiesen werden, welcher von der A1AO-ATP-Synthase aus E. callanderi katalysiert wird.
6. Durch Rekonstitution der A1AO-ATP-Synthase aus E. callanderi in Liposomen konnte erstmals biochemisch nachgewiesen werden, dass ein solches Enzym trotz seiner V-Typ c-Untereinheit in der Lage ist, ATP zu synthetisieren. Durch die Zugabe von Ionophoren (ETH 2120 und TCS) konnte der elektrochemische Ionengradient aufgehoben werden, wodurch keine ATP-Synthese beobachtet werden konnte. Der erstmalige Nachweis der ATP-Synthese wurde bei einem ΔµNa+ von 270 mV erbracht.
7. Die ATP-Synthese zeigte sich ebenfalls abhängig von der Na+-Konzentration. Der KM-Wert lag bei 1,1 ± 0,4 mM und war vergleichbar mit dem für die ATP-Hydrolyse ermittelten Wert. Ebenso konnte für die ATP-Synthese-Richtung gezeigt werden, dass DCCD mit Na+ um die gemeinsame Bindestelle in der c-Untereinheit konkurriert.
8. Um den biochemischen Nachweis zu erbringen, dass die A1AO-ATP-Synthase auch unter physiologisch relevanten Potentialen zur ATP-Synthese befähigt ist, wurde der energetische Schwellenwert der ATP-Synthese bestimmt. Dieser betrug 87 mV als Triebkraft für ΔpNa, 94 mV als Triebkraft für Δψ und 90 mV als Triebkraft für ΔµNa+. Erstaunlicherweise konnte die ATP-Synthese der A1AO-ATP-Synthase aus E. callanderi KIST612 sowohl durch Δψ als auch ΔpNa angetrieben werden. Unterschiedliche Kombinationen von Δψ und ΔpNa führten zu dem gleichen energetischen Schwellenwert; Δψ und ΔpNa waren im Enzym aus E. callanderi KIST612 äquivalente Triebkräfte.
9. Der energetische Schwellenwert der A1AO-ATP-Synthase aus E. callanderi KIST612 wurde mit dem der F1FO-ATP-Synthasen aus A. woodii, E. coli und P. modestum verglichen. Dazu wurden die Enzyme im ATP-Synthase-defizienten E. coli-Stamm DK8 produziert und anschließend durch Ni2+-NTA-Affinitätschromatographie gereinigt. Nach Einbau der Enzyme in Liposomen waren alle Enzyme in der Lage, ATP als Reaktion auf ΔµNa+ (A. woodii und P. modestum) oder ΔµH+ (E. coli) zu synthetisieren. Im Vergleich zum Enzym aus E. callanderi zeigten sich zwei auffällige Unterschiede. Erstens war keine der F1FO-ATP-Synthasen in der Lage, ΔpNa/ΔpH als alleinige Triebkraft zu nutzen. Während die ATP-Synthese in den Enzymen aus E. coli und P. modestum nur durch ΔµH+ bzw. ΔµNa+ angetrieben werden konnte, konnte das Enzym aus A. woodii zusätzlich auch durch Δψ als einzige Triebkraft angetrieben werden.
...
Acetogenic bacteria such as Acetobacterium woodii use the Wood–Ljungdahl pathway (WLP) for fixation of CO2 and energy conservation. This pathway enables conversion of diverse substrates to the main product of acetogenesis, acetate. Methyl group containing substrates such as methanol or methylated compounds, derived from pectin, are abundant in the environment and a source for CO2. Methyl groups enter the WLP at the level of methyltetrahydrofolic acid (methyl-THF). For methyl transfer from methanol to THF a substrate-specific methyltransferase system is required. In this study, we used genetic methods to identify mtaBC2A (Awo_c22760-Awo_c22740) as the methanol-specific methyltransferase system of A. woodii. After methyl transfer, methyl-THF serves as carbon and/or electron source and the respiratory Rnf complex is required for redox homeostasis if methanol + CO2 is the substrate. Resting cells fed with methanol + CO2, indeed converted methanol to acetate in a 4:3 stoichiometry. When methanol was fed in combination with other electron sources such as H2 + CO2 or CO, methanol was converted Rnf-independently and the methyl group was condensed with CO to build acetate. When fed in combination with alternative electron sinks such as caffeate methanol was oxidized only and resulting electrons were used for non-acetogenic growth. These different pathways for the conversion of methyl-group containing substrates enable acetogens to adapt to various ecological niches and to syntrophic communities.
A1AO ATP synthases with a V-type c subunit have only been found in hyperthermophilic archaea which makes bioenergetic analyses impossible due to the instability of liposomes at high temperatures. A search for a potential archaeal A1AO ATP synthase with a V-type c subunit in a mesophilic organism revealed an A1AO ATP synthase cluster in the anaerobic, acetogenic bacterium Eubacterium limosum KIST612. The enzyme was purified to apparent homogeneity from cells grown on methanol to a specific activity of 1.2 U·mg−1 with a yield of 12%. The enzyme contained subunits A, B, C, D, E, F, H, a, and c. Subunit c is predicted to be a typical V-type c subunit with only one ion (Na+)-binding site. Indeed, ATP hydrolysis was strictly Na+-dependent. N,N′-dicyclohexylcarbodiimide (DCCD) inhibited ATP hydrolysis, but inhibition was relieved by addition of Na+. Na+ was shown directly to abolish binding of the fluorescence DCCD derivative, NCD-4, to subunit c, demonstrating a competition of Na+ and DCCD/NCD-4 for a common binding site. After incorporation of the A1AO ATP synthase into liposomes, ATP-dependent primary transport of 22Na+ as well as ΔµNa+-driven ATP synthesis could be demonstrated. The Na+ A1AO ATP synthase from E. limosum is the first ATP synthase with a V-type c subunit from a mesophilic organism. This will enable future bioenergetic analysis of these unique ATP synthases.
Butyrate production in the acetogen Eubacterium limosum is dependent on the carbon and energy source
(2021)
Eubacterium limosum KIST612 is one of the few acetogenic bacteria that has the genes encoding for butyrate synthesis from acetyl-CoA, and indeed, E. limosum KIST612 is known to produce butyrate from CO but not from H2 + CO2. Butyrate production from CO was only seen in bioreactors with cell recycling or in batch cultures with addition of acetate. Here, we present detailed study on growth of E. limosum KIST612 on different carbon and energy sources with the goal, to find other substrates that lead to butyrate formation. Batch fermentations in serum bottles revealed that acetate was the major product under all conditions investigated. Butyrate formation from the C1 compounds carbon dioxide and hydrogen, carbon monoxide or formate was not observed. However, growth on glucose led to butyrate formation, but only in the stationary growth phase. A maximum of 4.3 mM butyrate was observed, corresponding to a butyrate:glucose ratio of 0.21:1 and a butyrate:acetate ratio of 0.14:1. Interestingly, growth on the C1 substrate methanol also led to butyrate formation in the stationary growth phase with a butyrate:methanol ratio of 0.17:1 and a butyrate:acetate ratio of 0.33:1. Since methanol can be produced chemically from carbon dioxide, this offers the possibility for a combined chemical-biochemical production of butyrate from H2 + CO2 using this acetogenic biocatalyst. With the advent of genetic methods in acetogens, butanol production from methanol maybe possible as well.
Erich Mühe and the rejection of laparoscopic cholecystectomy (1985) : a surgeon ahead of his time
(1998)
During the early 1980s, news of Semm's laparoscopic appendectomy was rippling through German medical circles. Erich Mühe, fascinated by Semm's technique and spurred by successes of the Erlangen endoscopists, came up with the idea of laparoscopic removal of gallstones. In 1984, Mühe had already worked out the details of an operative laparoscope, the “Galloscope,” and on September 12, 1985, he carried out the first laparoscopic cholecystectomy. Later, he modified his technique and operated through a trocar sleeve. Finally, he designed an “open laparoscope” with a circular light. By March 1987, Mühe had conducted 97 endoscopic gallbladder removals. He published information about his technique at the Congress of the German Surgical Society (April 1986) and at other surgical meetings in Germany. His concept, however, was ignored. In the middle of the 1980s, the surgical community was still not prepared for the era of “minimally invasive therapy.” Erich Mühe was a surgeon ahead of his time.
In the United States, culdoscopy (a vaginal approach to view the abdomen) replaced laparoscopy for about 20 years, circa 1950-1970. In contrast to many of his colleagues, Hans Frangenheim of Wuppertal, Germany, was not satisfied with culdoscopy and turned to an abdominal approach. Frangenheim began publishing his experiences with gynecological laparoscopy in 1958 and stressed technical improvements. He constructed a CO2 insufflator, wrote the first book on gynecological endoscopy, and introduced "cold light" into laparoscopy. Frangenheim strongly stimulated the rise of gynecological laparoscopy in Europe in the 1960s and later.
In the late 1950s, Patrick C. Steptoe, a British gynecologist, established contact with Palmer of Paris and Frangenheim of Wuppertal, Germany, and studied laparoscopic technique under the tutelage of these pioneers. Despite the negative attitude among his colleagues, Steptoe soon became one of the most innovative researchers in the field of abdominal endoscopy, particularly laparoscopic sterilization. In the late 1960s, Steptoe began working with Robert Edwards, an embryologist, and launched an in-vitro fertilization project obtaining eggs by means of laparoscopy. Both researchers experienced years of frustration, disappointment, ethical and scientific criticism as well as a difficult relationship with the mass media. Finally, in July 1978, Louise Brown, the first test-tube baby, was born in England.
Like many of his colleagues in the 1950s and 1960s, Patrick Christopher Steptoe (1913-1988), a gynecologist in Oldham, Great Britain, was concerned about the number of unnecessary laparotomies. Unfortunately, the Oldham group of hospitals was not a university clinic and Steptoe had scanty opportunity to develop his own research. In the late 1950s, he searched the medical literature for an alternative form of examination and came across publications about Decker's culdoscopy, the vaginal approach to view the abdomen. Since this method was not widespread in England, Steptoe, in 1958, went to Montreal, Boston, and New York in order to observe and learn the practical use of culdoscopy. However, Steptoe left America disappointed.
Work on tubal insufflation marked the beginning of Kurt Semm's (b. 1927) scientific career. In the early 1960s, he directed his attention to the fact that, from a technical standpoint, tubal insufflation was similar to creating pneumoperitoneum. In the mid-1960s, Semm - himself a gynecologist - invested his time and financial resources and risked his university career to develop an automatic abdominal insufflation device. Later he tried it out in the Clinic for Internal Medicine. Since, at that time, the term “laparoscopy” had negative connotations associated with it, Semm formulated a new term “pelviscopy.” In 1967, Semm presented his invention to Melvin Cohen, an American pioneer of gynecological laparoscopy, at the meeting of the American Fertility Society, held in Washington.
This profile of laparoscopic pioneers between the world wars "spotlights" Heinz Kalk, a German surgeon, and John C. Ruddock, an American internist. Social, political and economic upheavals characterized the decades between World War I and World War II and, along with geographic and communication restraints, permitted the concept of laparoscopy to develop differently in separate settings.
Raoul Palmer, World War II, and transabdominal coelioscopy : laparoscopy extends into gynecology
(1997)
The traditional gap between surgeons and internists was much wider 100 years ago than nowadays. At the beginning of the twentieth century, neither group was particularly open to the idea of scholarly exchange. In this respect, both early pioneers of laparoscopy, Georg Kelling (1866–1945, a German surgeon of Dresden, and Hans Christian Jacobaeus (1879–1937), an internist from Stockholm, Sweden, were interesting exceptions...
In the 1970s, Semm developed thermocoagulation, adapted the Roeder Loop, and further invented extra- and intracoporeal endoscopic knotting to achieve endoscopic hemostasis. His numerous technical inventions, especially the electronic insufflator, allowed more complex operations to be performed laparoscopically. His technique, however, was not quickly adopted by the surgical community. When the first fully laparoscopic appendectomy was carried out by Semm in 1980, a veritable storm broke loose. In the opinion of many prominent surgeons, Semm exaggerated the problem of adhesions, and laparoscopic technique itself was regarded as very dangerous. Misunderstood by medical scientists, Semm displayed an ability to force his ideas through despite skepticism and suspicion. He realized that endoscopic surgery had tremendous potential, and promoted laparoscopic technique not only in his field of gynecology but among general surgeons as well. In 1985, Muhe, of Boblingen, Germany, used Semm's technique to remove the first gallbladder in the world laparoscopically. Three years later when Semm presented a videotape of his laparoscopic appendectomy in Baltimore, he gave impetus to McKernan and Save of Marietta. Georgia, to carry out the first laparoscopic cholecystectomy in the United States.
In the late 1980s, laparoscopy was essentially a gynecologist's tool. One of the French private surgeons, Phillipe Mouret of Lyon, shared his surgery practice with a gynecologist and thus had access to both laparoscopic equipment and to patients requiring laparoscopy. In March of 1987, Mouret carried out his first cholecystectomy by means of electronic laparoscopy. Although he never published anything about this experience, the news on his technique reached Francois Dubois of Paris. Although having no prior laparoscopic experience, Dubois acted immediately. He borrowed the instruments from gynecologists, performed his first animal experiments and, in April 1988, carried out the first laparoscopic cholecystectomy (LC) in Paris. Inspired by Dubois, Jacques Perissat of Bordeaux, introduced endoscopic cholecystectomy in his clinic and presented this technique at a SAGES meeting in Louisville in April 1989. Very soon, news of the French work in LC soon swept beyond the country's borders. Dubois and Perissat spoke enthusiastically about their work at the meetings and were largely responsible for establishing what is today called the French technique.
At the end of the 20th century, access to information provided by the World Wide Web (WWW) is changing as never before. The fast availability of current medical literature and the availability of tools for easy access to information, as well as for the easy production of information, have confronted research physicians, scholars, and students with new kinds of problems, many of which concern us personally. Quality control, difficulty establishing basic citation components, lack of standard guidelines for citing, as well as the short lifetime of Internet addresses concern us deeply. Some of these problems could be solved by the concept of an "Online-Library of Medicine" presented in the following paper. Since, however, at the present time there are no good answers to the problems regarding citing Internet-based sources, a Web surfer must keep in his or her mind the motto “caveat lector” (let the reader beware) - or, rather, in the spirit of our time: click c@refully before you cite.
Background: Recently, public and political interest has focused on people living with rare diseases and their health concerns. Due to the large number of different types of rare diseases and the sizable number of patients, taking action to improve the life of those affected is gaining importance. In 2013, the federal government of Germany adopted a national action plan for rare diseases, including the call to establish a central information portal on rare diseases (Zentrales Informationsportal über seltene Erkrankungen, ZIPSE).
Objective: The objective of this study, therefore, was to conduct scientific research on how such a portal must be designed to meet the needs of patients, their families, and medical professionals, and to provide high-quality information for information seekers.
Methods: We chose a 3-step procedure to develop a needs-based prototype of a central information portal. In the first step, we determined the information needs of patients with rare diseases, their relatives, and health care professionals by means of qualitative interviews and their content-analytical evaluation. On the basis of this, we developed the basic structure of the portal. In the second step, we identified quality criteria for websites on rare diseases to ensure that the information linked with ZIPSE meets the quality demands. Therefore, we gathered existing criteria catalogs and discussed them in an expert workshop. In the third step, we implemented and tested the developed prototypical information portal.
Results: A portal page was configured and made accessible on the Web. The structure of ZIPSE was based on the findings from 108 qualitative interviews with patients, their relatives, and health care professionals, through which numerous information needs were identified. We placed particularly important areas of information, such as symptoms, therapy, research, and advisory services, on the start page. Moreover, we defined 13 quality criteria, referring to factors such as author information, creation date, and privacy, enabling links with high-quality information. Moreover, 19 users tested all the developed routines based on usability and comprehensibility. Subsequently, we improved the visual presentation of search results and other important search functions.
Conclusions: The implemented information portal, ZIPSE, provides high-quality information on rare diseases from a central point of access. By integrating the targeted groups as well as different experts on medical information during the construction, the website can assure an improved search for information for users. ZIPSE can also serve as a model for other Web-based information systems in the field of rare diseases.
Registered Report Identifier: RR1-10.2196/7425.
Cenozoic lignite deposits are widespread across Europe, Asia, America, Australia, and Indonesia. These deposits were the subject of numerous studies on changes in regional/global paleoclimates, paleobotany, paleoenvironment, and basin evolutions, which led to the formation of these lignites. In some of these Cenozoic lignite deposit basins, a succession of pale and dark lignite layers has been described in the Miocene Lower Rhine Basin in Germany, the Oligo-Miocene Gippsland Basin in southeastern Australia, and several Mio-Pliocene basins in southwestern China. Furthermore, pale and dark lithotypes in lignite seams also have been found in some Pliocene lignite deposit basins from Slovenia, Serbia, and Poland. The widespread cyclic occurrence of pale and dark layers in lignite basins might represent alternating depositional conditions related to the changes in plant communities, the regional/global climate, the tectonic setting, the Asian monsoon, and orbital periodicity during peat formation. ...
Die vorliegende Dissertation bietet eine eingehende Analyse der Entstehung und Evolution der rechtlichen Rahmenbedingungen der Arbeitnehmerüberlassung in der Volksrepublik China. Ursprünglich in den 1980er Jahren als Instrument zur Reduzierung der Arbeitslosigkeit eingeführt, hat sich die Funktion der Arbeitnehmerüberlassung im Laufe der Zeit gewandelt. Diese Entwicklung wird in der Arbeit sorgfältig nachgezeichnet.
Die Studie skizziert die legislative Entwicklung von der anfänglichen Konzeption bis zur formellen Legalisierung im Jahr 2007 und untersucht die geltenden gesetzlichen Bestimmungen zur Arbeitnehmerüberlassung. Dabei werden die spezifischen Aspekte der chinesischen Gesetzgebung herausgestellt, bei der die Arbeitnehmerüberlassung vornehmlich als komplementäre Beschäftigungsform angesehen wird. Die Arbeit beleuchtet die Rechte und Pflichten aller Akteure. Obwohl nicht umfassend rechtsvergleichend angelegt, wird doch immer wieder ein Blick auf die Rechtslage in Deutschland geworfen, sodass die unterschiedlichen regulatorischen Ansätze deutlich hervortreten. Zugleich werden die besonderen Herausforderungen behandelt, denen diese Beschäftigungsform im chinesischen Kontext begegnet.
Drug resistance is an obstacle in the therapy of acute lymphoblastic leukemia (ALL). Whether the physical properties such as the motility of the cells contribute to the survival of ALL cells after drug treatment has recently been of increasing interest, as they could potentially allow the metastasis of solid tumor cells and the migration of leukemia cells. We hypothesized that chemotherapeutic treatment may alter these physical cellular properties. To investigate the motility of chemotherapeutics-treated B-cell ALL (B-ALL) cells, patient-derived B-ALL cells were treated with chemotherapy for 7 days and left for 12 h without chemotherapeutic treatment. Two parameters of motility were studied, velocity and migration distance, using a time-lapse imaging system. The study revealed that compared to non-chemotherapeutically treated B-ALL cells, B-ALL cells that survived chemotherapy treatment after 7 days showed reduced motility. We had previously shown that Tysabri and P5G10, antibodies against the adhesion molecules integrins α4 and α6, respectively, may overcome drug resistance mediated through leukemia cell adhesion to bone marrow stromal cells. Therefore, we tested the effect of integrin α4 or α6 blockade on the motility of chemotherapeutics-treated ALL cells. Only integrin α4 blockade decreased the motility and velocity of two chemotherapeutics-treated ALL cell lines. Interestingly, integrin α6 blockade did not affect the velocity of chemoresistant ALL cells. This study explores the physical properties of the movements of chemoresistant B-ALL cells and highlights a potential link to integrins. Further studies to investigate the underlying mechanism are warranted.
An increasing number of individuals work in jobs with little standardization and repetition, that is, with high levels of job non‐routinization. At the same time, demands for creativity are high, which raises the question of how employees can use job non‐routinization to develop creativity. Acknowledging the importance of social processes for creativity, we propose that transformational leaders raise feelings of organizational identification in followers and that this form of identification then helps individuals to develop creativity in jobs with little routinization. This is because organizational members evaluate and promote those ideas as more creative, which are in line with a shared understanding of creativity within the organization. To investigate these relationships, we calculated a mediated moderation model with 173 leader–follower dyads from China. Results confirm our hypotheses that transformational leadership moderates the relationship between job non‐routinization on employee creativity through organizational identification. We conclude that raising feelings of social identity is a key task for leaders today, especially when working in uncertain and fast developing environments with little repetition and the constant need to develop creative ideas.
In this study, a portable electronic nose (E-nose) prototype is developed using metal oxide semiconductor (MOS) sensors to detect odors of different wines. Odor detection facilitates the distinction of wines with different properties, including areas of production, vintage years, fermentation processes, and varietals. Four popular machine learning algorithms—extreme gradient boosting (XGBoost), random forest (RF), support vector machine (SVM), and backpropagation neural network (BPNN)—were used to build identification models for different classification tasks. Experimental results show that BPNN achieved the best performance, with accuracies of 94% and 92.5% in identifying production areas and varietals, respectively; and SVM achieved the best performance in identifying vintages and fermentation processes, with accuracies of 67.3% and 60.5%, respectively. Results demonstrate the effectiveness of the developed E-nose, which could be used to distinguish different wines based on their properties following selection of an optimal algorithm.
More than 70 human adenoviruses with type-dependent pathogenicity have been identified but biological information about the majority of these virus types is scarce. Here we employed multiple sequence alignments and structural information to predict receptor usage for the development of an adenoviral vector with novel biological features. We report the generation of a cloned adenovirus based on human adenovirus type 17 (HAdV17) with high sequence homology to the well characterized human adenovirus type 37 (HAdV37) that causes epidemic keratoconjunctivitis (EKC). Our study revealed that human CD46 (CD46) is involved in cell entry of HAdV17. Moreover, we found that HAdV17 infects endothelial cells (EC) in vitro including primary cells at higher efficiencies compared to the commonly used human adenovirus type 5 (HAdV5). Using a human CD46 transgenic mouse model, we observed that HAdV17 displays a broad tropism in vivo after systemic injection and that it transduces ECs in this mouse model. We conclude that the HAdV17-based vector may provide a novel platform for gene therapy.
To study the implications of highly space-demanding organic moieties on the properties of self-assembled monolayers (SAMs), triptycyl thiolates and selenolates with and without methylene spacers on Au(111) surfaces were comprehensively studied using ultra-high vacuum infrared reflection absorption spectroscopy, X-ray photoelectron spectroscopy, near-edge X-ray absorption fine structure spectroscopy and thermal desorption spectroscopy. Due to packing effects, the molecules in all monolayers are substantially tilted. In the presence of a methylene spacer the tilt is slightly less pronounced. The selenolate monolayers exhibit smaller defect densities and therefore are more densely packed than their thiolate analogues. The Se–Au binding energy in the investigated SAMs was found to be higher than the S–Au binding energy.
Mapping interactions between the Ca2+-ATPase and its substrate ATP with infrared spectroscopy
(2003)
Infrared spectroscopy has been used to map substrate-protein interactions: the conformational changes of the sarcoplasmic reticulum Ca(2+)-ATPase upon nucleotide binding and ATPase phosphorylation were monitored using the substrate ATP and ATP analogues (2'-deoxy-ATP, 3'-deoxy-ATP, and inosine 5'-triphosphate), which were modified at specific functional groups of the substrate. Modifications to the 2'-OH, the 3'-OH, and the amino group of adenine reduce the extent of binding-induced conformational change of the ATPase, with particularly strong effects observed for the latter two. This demonstrates the structural sensitivity of the nucleotide-ATPase complex to individual interactions between nucleotide and ATPase. All groups studied are important for binding and interactions of a given ligand group with the ATPase depend on interactions of other ligand groups. Phosphorylation of the ATPase was observed for ITP and 2'-deoxy-ATP, but not for 3'-deoxy-ATP. There is no direct link between the extent of conformational change upon nucleotide binding and the rate of phosphorylation showing that the full extent of the ATP-induced conformational change is not mandatory for phosphorylation. As observed for the nucleotide-ATPase complex, the conformation of the first phosphorylated ATPase intermediate E1PCa(2) also depends on the nucleotide, indicating that ATPase states have a less uniform conformation than previously anticipated.
Phosphorylation of the sarcoplasmic reticulum Ca(2+)-ATPase (SERCA1a) was studied with time-resolved Fourier transform infrared spectroscopy. ATP and ATP analogs (ITP, 2'- and 3'-dATP) were used to study the effect of the adenine ring and the ribose hydroxyl groups on ATPase phosphorylation. All modifications of ATP altered conformational changes and phosphorylation kinetics. The differences compared with ATP increased in the following order: 3'-dATP > ITP > 2'-dATP. Enzyme phosphorylation with ITP results in larger absorbance changes in the amide I region, indicating larger conformational changes of the Ca(2+)-ATPase. The respective absorbance changes obtained with 3'-dATP are significantly different from the others with different band positions and amplitudes in the amide I region, indicating different conformational changes of the protein backbone. ATPase phosphorylation with 3'-dATP is also much ( approximately 30 times) slower than with ATP. Our results indicate that modifications to functional groups of ATP (the ribose 2'- and 3'-OH and the amino group in the adenine ring) affect gamma-phosphate transfer to the phosphorylation site of the Ca(2+)-ATPase by changing the extent of conformational change and the phosphorylation rate. ADP binding to the ADP-sensitive phosphoenzyme (Ca(2)E1P) stabilizes the closed conformation of Ca(2)E1P.
Der Fokus der vorliegenden Arbeit liegt in der erfolgreichen Entwicklung von vier neuen Methoden zur Darstellung von Sulfonen und von einer neuen Methode zur Synthese von N-Aminosulfonamiden. Dabei sollen die Strukturmotive von Sulfonen und Sulfonamiden aus stabilen Startmaterialien in einer einfachen Durchführung, vorzugsweise in einer Eintopf-Synthese oder Multikomponenten-Reaktion, aufgebaut und der Reaktionsmechanismus weitestgehend experimentell aufgeklärt werden. In diesem Rahmen konnte die Lücke einer Nickel-katalysierten Darstellung von Diarylsulfonen sowohl unter thermischen als auch unter photochemischen Bedingungen gefüllt werden. Zusätzlich konnten im Bereich der SO2-Fixierung Sulfonylradikale mittels Diaryliodoniumsalzen und sichtbaren Licht erzeugt werden, die mit dem entsprechenden Quencher zum Sulfonamid oder Sulfon weiter reagieren konnten.
The mouse bitter taste receptors Tas2r143, Tas2r135, and Tas2r126 are encoded by genes that cluster on chromosome 6 and have been suggested to be expressed under common regulatory elements. Previous studies indicated that the Tas2r143/Tas2r135/Tas2r126 cluster is expressed in the heart, but other organs had not been systematically analyzed. In order to investigate the expression of this bitter taste receptor gene cluster in non-gustatory tissues, we generated a BAC (bacterial artificial chromosome) based transgenic mouse line, expressing CreERT2 under the control of the Tas2r143 promoter. After crossing this line with a mouse line expressing EGFP after Cre-mediated recombination, we were able to validate the Tas2r143-CreERT2 transgenic mouse line and monitor the expression of Tas2r143. EGFP-positive cells, indicating expression of members of the cluster, were found in about 47% of taste buds, and could also be found in several other organs. A population of EGFP-positive cells was identified in thymic epithelial cells, in the lamina propria of the intestine and in vascular smooth muscle cells of cardiac blood vessels. EGFP-positive cells were also identified in the epithelium of organs readily exposed to pathogens including lower airways, the gastrointestinal tract, urethra, vagina, and cervix. With respect to the function of cells expressing this bitter taste receptor cluster, RNA-seq analysis in EGFP-positive cells isolated from the epithelium of trachea and stomach showed expression of genes related to innate immunity. These data further support the concept that bitter taste receptors serve functions outside the gustatory system.
NADH:ubiquinone oxidoreductase (Complex Ⅰ) is the first and largest enzyme in the respiratory chain. It catalyzes the transfer of two electrons from NADH to ubiquinone via a series of enzyme-bound redox centers - Flavin mononucleotide (FMN) and iron-sulfur (Fe-S) clusters – and couples the exergonic reaction with the endergonic translocation of four protons across the membranes. Bacteria contain the minimal form of complex I, which is composed of 14 conserved core subunits with a molecular mass of around 550 kDa. Complex Ⅰ has an L-shaped structure which can be subdivided into two major parts (arms). The hydrophilic arm protruding into the bacterial cytosol (or mitochondrial matrix) harbors the binding site for the substrate NADH, the two- to one-electron switch FMN and all one-electron transferring Fe-S clusters and therefore considered as the catalytic unit. The membrane arm consists of the membranespanning subunits and conducts the proton pumping process. The Quinone binding site is located at the interface of both arms. ...
Alterations in dendritic spine numbers are linked to deficits in learning and memory. While we previously revealed that postsynaptic plasticity-related gene 1 (PRG-1) controls lysophosphatidic acid (LPA) signaling at glutamatergic synapses via presynaptic LPA receptors, we now show that PRG-1 also affects spine density and synaptic plasticity in a cell-autonomous fashion via protein phosphatase 2A (PP2A)/β1-integrin activation. PRG-1 deficiency reduces spine numbers and β1-integrin activation, alters long-term potentiation (LTP), and impairs spatial memory. The intracellular PRG-1 C terminus interacts in an LPA-dependent fashion with PP2A, thus modulating its phosphatase activity at the postsynaptic density. This results in recruitment of adhesome components src, paxillin, and talin to lipid rafts and ultimately in activation of β1-integrins. Consistent with these findings, activation of PP2A with FTY720 rescues defects in spine density and LTP of PRG-1-deficient animals. These results disclose a mechanism by which bioactive lipid signaling via PRG-1 could affect synaptic plasticity and memory formation.
Mollusca is the second-largest animal phylum with over 100,000 species among eight distinct taxonomic classes. Across 1000 living species in the class Polyplacophora, chitons have a relatively constrained morphology but with some notable deviations. Several genera possess “shell eyes”, true eyes with a lens and retina that are embedded within the dorsal shells, which represent the most recent evolution of animal eyes. The phylogeny of major chiton clades is mostly well established, in a set of superfamily and higher-level taxa supported by various approaches including multiple gene markers, mitogenome-phylogeny and phylotranscritomic approaches as well as morphological studies. However, one critical lineage has remained unclear: Schizochiton was controversially suggested as a potential independent origin of chiton shell eyes. Here, with the draft genome sequencing of Schizochiton incisus (superfamily Schizochitonoidea) plus assembly of transcriptome data from other polyplacophorans, we present phylogenetic reconstructions using both mitochondrial genomes and phylogenomic approaches with multiple methods. Phylogenetic trees from mitogenomic data are inconsistent, reflecting larger scale confounding factors in molluscan mitogenomes. A consistent robust topology was generated with protein coding genes using different models and methods. Our results support Schizochitonoidea is a sister group to other Chitonoidea in Chitonina, in agreement with established classification. This suggests that the earliest origin of shell eyes is in Schizochitonoidea, which were also gained secondarily in other genera in Chitonoidea. Our results have generated a holistic review of the internal relationship within Polyplacophora, and a better understanding on the evolution of Polyplacophora.
Foamy viruses (FVs) are distinct retroviruses classified as Spumaretrovirinae in contrast to the other retroviruses, the Orthoretrovirinae. As a unique feature of FVs, Gag is not sufficient for sub-viral particle (SVP) release. In primate and feline FVs (PFV and FFV), particle budding completely depends on the cognate FV Env glycoproteins. It was recently shown that an artificially added N-terminal Gag myristoylation signal (myr-signal) overcomes this restriction in PFV inducing an Orthoretrovirus-like budding phenotype. Here we show that engineered, heterologous N-terminal myr-signals also induce budding of the distantly related FFV Gag. The budding efficiency depends on the myr-signal and its location relative to the N-terminus of Gag. When the first nine amino acid residues of FFV Gag were replaced by known myr-signals, the budding efficiency as determined by the detection of extracellular SVPs was low. In contrast, adding myr-signals to the intact N-terminus of FFV Gag resulted in a more efficient SVP release. Importantly, budding of myr-Gag proteins was sensitive towards inhibition of cellular N-myristoyltransferases. As expected, the addition or insertion of myr-signals that allowed Env-independent budding of FFV SVPs also retargeted Gag to plasma membrane-proximal sites and other intracellular membrane compartments. The data confirm that membrane-targeted FV Gag has the capacity of SVP formation.
Protein ubiquitination is a post-translational modification that typically involves the conjugation of ubiquitin to substrate proteins via a three-enzyme cascade and regulates a wide variety of cellular processes. Recent studies have revealed that SidE family of Legionella effectors such as SdeA catalyzes novel phosphoribosyl-linked ubiquitination (PR-ubiquitination) of serines in host substrate proteins utilizing NAD+, without the need of E2, E3. The catalytic core of SdeA comprises a mono-ADP-ribosyltransferase (mART) domain that functions to ADP-ribosylate ubiquitin, and a phosphodiesterase (PDE) domain that processes ADP-ribosylated ubiquitin and transfers the resulting phosphoribosylated ubiquitin to serines of substrates.
To date, extensive efforts have been made to study the function of SdeA and mechanism of SdeA mediated PR-ubiquitination, however, the cellular effects of this novel ubiquitination and phosphoribosylation of ubiquitin remained poorly understood. In our study, using biochemical and cell biological approaches, we explored the biological effect of phosphoribosylation of ubiquitin caused by SdeA in cells. We found that phosphoribosylated ubiquitin is not available for conventional ubiquitination, thereby phosphoribosylation of ubiquitin impairs numerous classical ubiquitination related cellular processes including mitophagy, TNF-α signaling and proteasomal degradation.
The precise temporal regulation of the functions of bacterial effectors during Legionella infection by other effectors with antagonizing activities has been well studied so far. Not surprisingly, PR-ubiquitination catalyzed by SidE family effecters is tightly controlled as well, it has been long known that effector SidJ counteracts the toxicity of SdeA to yeast cells. Interestingly, in an experiment for verifying the activity of SidJ, we found that Legionella lysate lacking SidJ was still able to remove ubiquitin from PR-ubiquitinated substrates. Using biochemical approach we identified DupA and DupB, two Legionella bacterial effectors that specifically reverse the novel serine PR-ubiquitination catalyzed by SdeA. We found that DupA and DupB possess a highly homologous PDE domain that removes ubiquitin from PR-ubiquitinated substrates by cleaving the phosphodiester bond between the phosphoribosylated-ubiquitin and serines of substrates. Catalytically deficient mutant DupA H67A strongly binds to PR-ubiquitinated proteins but not capable of cleaving PR-ubiquitin, using it as a trapping bait we identified over 180 substrates of PR-ubiquitination, including a number of ER and Golgi proteins.
In particular, we found that exogenously expressed SdeA localizes to the Golgi apparatus via its C-terminal region and disrupts the Golgi. We validated the identified potential substrates of SidE effectors and found that SdeA modifies Golgi tethering proteins GRASP55 and GRASP65. Using mass spectrometry analyses we identified four serine targets (S3, S408, S409, S449) of GRASP55 PR-ubiquitinated by SdeA in vitro. Ubiquitination of GRASP55 serine mutant in cells co-expressing SdeA or infected with Legionella was markedly decreased, compared with that of the wild-type GRASP55. In addition, with co-immunoprecipitation analyses we found that SdeA-catalyzed ubiquitination regulates the function of GRASP55. PR-ubiquitinated GRASP55 exhibited reduced self-interaction compared to unmodified GRASP55, expression of GRASP55 serine mutant in cells in part rescued Golgi damage caused by SdeA. Furthermore, our study reveals that Golgi structure disruption caused by SdeA does not result in the recruitment of Golgi membranes to the Legionella-containing vacuoles. Instead, it affects cellular secretory pathway including cytokine secretion in cells.
Taken all together, this work expands the understanding of this unconventional PR-ubiquitination catalyzed by Legionella effectors and sheds light on the functions of PR-ubiquitination by which Legionella regulates the Golgi function and secretion pathway during bacterial infection.
Serine-ubiquitination regulates Golgi morphology and the secretory pathway upon Legionella infection
(2021)
SidE family of Legionella effectors catalyze non-canonical phosphoribosyl-linked ubiquitination (PR-ubiquitination) of host proteins during bacterial infection. SdeA localizes predominantly to ER and partially to the Golgi apparatus, and mediates serine ubiquitination of multiple ER and Golgi proteins. Here we show that SdeA causes disruption of Golgi integrity due to its ubiquitin ligase activity. The Golgi linking proteins GRASP55 and GRASP65 are PR-ubiquitinated on multiple serine residues, thus preventing their ability to cluster and form oligomeric structures. In addition, we found that the functional consequence of Golgi disruption is not linked to the recruitment of Golgi membranes to the growing Legionella-containing vacuoles. Instead, it affects the host secretory pathway. Taken together, our study sheds light on the Golgi manipulation strategy by which Legionella hijacks the secretory pathway and promotes bacterial infection.
Mistakes in translation of messenger RNA into protein are clearly a detriment to the recombinant production of pure proteins for biophysical study or the biopharmaceutical market. However, they may also provide insight into mechanistic details of the translation process. Mistakes often involve the substitution of an amino acid having an abundant codon for one having a rare codon, differing by substitution of a G base by an A base, as in the case of substitution of a lysine (AAA) for arginine (AGA). In these cases one expects the substitution frequency to depend on the relative abundances of the respective tRNAs, and thus, one might expect frequencies to be similar for all sites having the same rare codon. Here we demonstrate that, for the ADP-ribosylation factor from yeast expressed in E. coli, lysine for arginine substitutions frequencies are not the same at the 9 sites containing a rare arginine codon; mis-incorporation frequencies instead vary from less than 1 to 16%. We suggest that the context in which the codons occur (clustering of rare sites) may be responsible for the variation. The method employed to determine the frequency of mis-incorporation involves a novel mass spectrometric analysis of the products from the parallel expression of wild type and codon-optimized genes in 15N and 14N enriched media, respectively. The high sensitivity and low material requirements of the method make this a promising technology for the collection of data relevant to other mis-incorporations. The additional data could be of value in refining models for the ribosomal translation elongation process.
In high-energy nuclear collisions, heavy quark potential at finite temperature controls the quarkonium suppression. Including the relaxation of the medium induced by the relative velocity between quarkonia and the deconfined expanding matter, the Debye screening is reduced and the quarkonium dissociation takes place at a higher temperature. As a consequence of the velocity-dependent dissociation temperature, the quarkonium suppression at high transverse momentum is significantly weakened in high-energy nuclear collisions at RHIC and LHC.
Arsenic trioxide is a toxic metalloid and carcinogen that is also used as an anticancer drug, and for this reason it is important to identify the routes of arsenite uptake by cells. In this study the ability of hexose transporters to facilitate arsenic trioxide uptake in Saccharomyces cerevisiae was examined. In the absence of glucose, strains with disruption of the arsenite efflux gene ACR3 accumulated high levels of (73)As(OH)(3). The addition of glucose inhibited uptake by approximately 80%. Disruption of FPS1, the aquaglyceroporin gene, reduced glucose-independent uptake by only about 25%, and the residual uptake was nearly completely inhibited by hexoses, including glucose, galactose, mannose, and fructose but not pentoses or disaccharides. A strain lacking FPS1, ACR3, and all genes for hexose permeases except for HXT3, HXT6, HXT7, and GAL2 exhibited hexose-inhibitable (73)As(OH)(3) uptake, whereas a strain lacking all 18 hexose transport-related genes (HXT1 to HXT17 and GAL2), FPS1 and ACR3, exhibited <10% of wild type (73)As(OH)(3) transport. When HXT1, HXT3, HXT4, HXT5, HXT7, or HXT9 was individually expressed in that strain, hexose-inhibitable (73)As(OH)(3) uptake was restored. In addition, the transport of [(14)C]glucose was inhibited by As(OH)(3). These results clearly demonstrate that hexose permeases catalyze the majority of the transport of the trivalent metalloid arsenic trioxide.
21 Kilometer zu Fuß von Praunheim nach Eppstein. Keine Wanderung – ja, was denn sonst? Ist Dein Auto kaputt? Haste kein Geld für die S-Bahn? Als Leibesübung? Oder den Enterprise-Beamer nicht gefunden? Viermal Nein. Wahrscheinlich bin ich ein Mensch mit eingeschränkter Mobilität. Mobil sein heißt, möglichst schnell, geschmeidig und nachhaltig seinen Körper von A nach B oder auch nach Z zu bewegen. Keine Zeit verlieren, keine Ressourcen verschwenden, keine Umwege fahren. Am besten so geräuscharm wie ein eleganter Skater, das ist smart, das ist verständlich. Und barrierefrei müssen alle Wege sein, vor allem für die Nichtschwerbehinderten.
The formulation of the Partial Information Decomposition (PID) framework by Williams and Beer in 2010 attracted a significant amount of attention to the problem of defining redundant (or shared), unique and synergistic (or complementary) components of mutual information that a set of source variables provides about a target. This attention resulted in a number of measures proposed to capture these concepts, theoretical investigations into such measures, and applications to empirical data (in particular to datasets from neuroscience). In this Special Issue on “Information Decomposition of Target Effects from Multi-Source Interactions” at Entropy, we have gathered current work on such information decomposition approaches from many of the leading research groups in the field. We begin our editorial by providing the reader with a review of previous information decomposition research, including an overview of the variety of measures proposed, how they have been interpreted and applied to empirical investigations. We then introduce the articles included in the special issue one by one, providing a similar categorisation of these articles into: i. proposals of new measures; ii. theoretical investigations into properties and interpretations of such approaches, and iii. applications of these measures in empirical studies. We finish by providing an outlook on the future of the field.
Reseña de "Patologías de la razón. Historia y actualidad de la Teoría Crítica" de Axel Honneth
(2011)
In this paper, we discuss Armstrong’s account of attachment-based claims to natural resources, the kind of rights that follow from attachment-based claims, and the limits we should impose on such claims. We hope to clarify how and why attachment matters in the discourse on resource rights by presenting three challenges to Armstrong’s theory. First, we question the normative basis for certain attachment claims, by trying to distinguish more clearly between different kinds of attachment and other kinds of claims. Second, we highlight the need to supplement Armstrong’s account with a theory of how to weigh different attachment claims so as to establish the normative standing that different kinds of attachment claims should have. Third, we propose that sustainability must be a necessary requirement for making attachment claims to natural resources legitimate. Based on these three challenges and the solutions we propose, we argue that attachment claims are on the one hand narrower than Armstrong suggests, while on the other hand they can justify more far-reaching rights to control than Armstrong initially considers, because of the particular weight that certain attachment claims have.
BACKGROUND: The growing body of data on prevalence of complementary and alternative medicine (CAM) usage means there is a need to standardize measurement on an international level. An international team has published a questionnaire0020 (I-CAM-Q), but no validation has yet been provided. The aim of the present study was to provide a German measurement instrument for CAM usage (I-CAM-G) which closely resembles the original English version, and to assess it's performance in two potential samples for measuring CAM usage.
METHODS: The English I-CAM-Q questionnaire was translated into German, and adapted slightly. The resulting I-CAM-G questionnaire was then pre-tested on N=16 healthy volunteers, and 12 cognitive interviews were carried out. The questionnaire was employed in a sample of breast cancer patients (N=92, paper and pencil), and a sample from the general population (N=210, internet survey). Descriptive analyses of items and missing data, as well as results from the cognitive interviews, are presented in this paper.
RESULTS: The translated questionnaire had to be adapted to be consistent with the German health care system. All items were comprehensible, whereby some items were unambiguous (e.g. CAM use yes/no, helpfulness), while others gave rise to ambiguous answers (e.g. reasons for CAM use), or high rates of missing data (e.g. number of times the CAM modality had been used during the last 3 months). 78% of the breast cancer patients and up to 85% of a sample of the general population had used some form of CAM.
CONCLUSIONS: Following methodologically sound and comprehensive translation, adaptation and assessment processes using recognized translation procedures, cognitive interviews, and studying the performance of the questionnaire in two samples, we arrived at a German questionnaire for measuring CAM use which is comparable with the international (English) version. The questionnaire appropriately measures CAM use, with some items being more appropriate than others. We recommend the development of a short version.
Fullerene, Nanoröhren und auch anderen hohlen Strukturen können Atome oder Moleküle in ihrem Inneren einschliessen. In solchen Systemen beeinflussen sich die einschliessenden und eingeschlossenen Strukturen gegenseitig, und es existiert eine Vielzahl unterschiedlicher Effekte: Änderungen der Energieeigenwerte, Änderungen der Elektronenstruktur sowie Ladungsaustausch zwischen den beiden Teilen des Systems. All diese Effekte beeinflussen die Absorbtionsspektren beider Systembestandteile. In dieser Arbeit liegt der Schwerpunkt auf einem dieser Effekte: Dem dynamischen Abschirmungseffekt. Den dynamischen Abschrimungseffekt findet man insbesondere bei solchen Systemen, bei denen die einschliessende Struktur viele delokalisierte Elektronen besitzt. Zu solchen Systemen gehören zum Beispiel endohedrale Komplexe sowie "Nano Peapods" (Nanoröhren mit eingeschlossenen Atomen oder Molekülen). Ursächlich für den dynamischen Abschirmungseffekt ist die Tatsache, dass die Elek- tronen des umschliessenden Käfigs die eingeschlossene Struktur gegen elektromagentische Wellen abschirmen. Mit anderen Worten: Dass das elektrische Feld sowohl innerhalb als auch ausserhalb der einschliessenden Struktur wird vom polarisierenden Feld der einschliessenden Struktur beein°usst. Klassisch betrachtet ist die Photoabsorbtionsrate eines Objektes proportional zu der Intensität eines elektrischen Feldes. Somit unterscheidet sich die Photoabsorbtionsrate (und auch der Wirkungsquerschnitt) der gleichen elektromagnetischen Welle einer Struktur innerhalb eines Einschlusses von der Photoabsorbtionsrate eines freien Atoms oder Moleküls. Der dynamische Abschirmungsfaktor dient als Beschreibung des Verhältnisses dieser beiden Wirkungsfaktoren. Darüber hinnaus können, da die Käfigstruktur viele delokalisierte Elektronen besitzt, Elektronen gemeinsam angeregt werden und somit Plasmons hervorrufen. Wenn sich die Frequenz der anregenden elektromagentischen Strahlung der Resonanzfrequenz dieser Plasmonen annähert, wird das polarisierende Feld besonders gross. Im Endeffekt beobachtet man nahe der Plasmon-Frequenz einen starken Anstieg des Wirkungsquerschnittes der eingeschlossenen Struktur. Der Schwerpunkt in dieser Arbeit liegt auf einer spezifischen Art von System: Endo- hedrale Komplexe. Diese Strukturen wurden mit einem klassichen Ansatz untersucht. Die Fullerene wurden, da sie viele delokalisierte Elektronen besitzen als dielektrische Schalen modelliert, mit der dielektrischen Funktion eines freien Elektronengases. Dabei ist der dynamische Abschrimfaktor durch Auswertung des gesamten elektrischen Feldes am Ort des Atoms im Vergleich zur Stärke des externen elektrischen Feldes definiert. Der dynamische Abschrimungsfaktor wurde für eine Vielzahl unterschiedlicher Situationen untersucht. Im einfachsten Fall, bei dem die Polarisierbarkeit des eingeschlossenen Atoms vernachlässigbar klein ist, ist der dynamische Abschirmfaktor unabhängig von der Position des Atoms innerhalb des Fullerens. Die Veranderung des elektrischen Feldes wird vollständig von der dynamischen Reaktion des Fullerens auf das externe Feld bestimmt. Da das Fulleren von endlicher Dicke ist (definiert duch die räumliche Ausdehnung der Elektronenwolke), besitzt es zwei Oberflächen. Die Wirkung der elektromagnetischen Welle induziert oszillierende Oberflächen-Ladungs-Dichten. Die Oberflächen-Ladungs-Dichten wechselwirken und erzeugen somit zwei Plasmon Eigenmoden: eine symmetrische Mode bei der beide Ladungsdichten in Phase oszillieren und eine antisymmetrische bei denen sie gegen-phasig oszillieren. Der dynamische Abschirmfaktor eines solchen eingeschlossenen Atoms zeigt zwei ausgeprägte Peaks, welche eine Manifestation dieser beiden Oberflächen-Plasmone sind. Die Wechselwirkung zwischen diesen Plasmon-Moden wurde untersucht. Darüber hinnaus wurde der Einfluss der Grösse des Käfigs untersucht; mit Fallbeispielen für C20, C60, C240 und C960 [2, 3]. Im Grenzfall eines unendlich dünnen Fulleren-Käfigs ist nur ein einelnes Oberflächen-Plasmon zu beachten. Als nächstes wurde der Einfluss des eingeschlossenen Atoms untersucht [3{5]. Wenn dessen Polarisierbarkeit gross ist, wird ein reziproker Einfluss des Dipol-Moments des Atoms auf das Fulleren messbar. Dies wurde zunächst unter der Annahme eines zentral angeodneten Atoms für die folgenden drei Fälle untersucht: Ar@C60, Xe@C60 and Mg@C60. Der dynamische Abschirmfaktor verÄanderte sich dabei nur wenig. Der stärkste Einfluss auf das Verhalten des Abschirmfaktors ensteht durch Unstetigkeiten in der Polarisierbarkeit des Atoms nahe dessen Ionisierungs-Schwelle. Die Wahl dieser drei Fallstudien ist durch die quantenmechanischen Berechnungen von [7-9] motiviert. Der Vergleich mit diesen Berechnungen zeigt hohe Übereintismmungen für Ar@C60 und Xe@C60. Allerdings fanden sich auch grosse Unterschiede für Mg@C60, vor allem bei niedriger Photonen-Energie. Das Fulleren besitzt zwei Arten von Valenzelektronen: Die ¼-Elektronen und die stärker gebundenen ¾-Elektronen. Dies führt zum Auftreten zweier Oberflächen-Plasmons in Fullerenen. Dabei ist allgemein bekannt, dass das Buckminster-Fulleren ein Plasmon nahe 8 eV, sowie ein deutlich größeres nahe 20 eV besitzt. Diese sind mit den ¼-Elektronen, respektive den ¾-Elektronen verknüpft (auch wenn ¼-Elektronen zusÄatzlich zu dem ¾-Plasmon beitragen). Aufgrund dieser Tatsache wäre es angemessener, die Valenzelektronen nicht als Ein-, sondern als Zwei-Komponenten-Elektronen-Gas zu behandeln. Um dies miteinzubeziehen, passten wir unser Modell dahingehend an, dass wir das Fulleren als zwei unabhängige kozentrische dielektrische Schalen simulieren. Die Valenzelektronen wurden so auf die zwei Schalen aufgeteilt, dass eine Schlale alle Elektronen enthielt, die Teil des ¼{Plasmons sind, und die andere alle Beteiligten am ¾{Plasmon [4, 5]. Der Vergleich dieses modifizierten Modelles mit den quanten{mechanischen Berechnungen zeigte eine deutlich verbesserte Übereintismmung der Ergebnisse. Alle Merkmale der Berechnungen, vor allem das deutliche Maximum nahe 10 eV bei Mg@C60, konnten reproduziert und damit erklärt werden. Bedingt durch die endliche Dicke der Fulleren-Schale spalten jeder der beiden Plasmonen in jeweils zwei Plasmon Eigenmoden auf. Daher zeigt der dynamische Abschirm-Faktor nun vier Haupt{Eigenschaften welche die vier Plasmon-Moden abbilden. Nichtsdestotrotz zeigen sich immer noch quantitative Unterschiede im Falle von Mg@C60. Fürr Ar@C60 und Xe@C60, bei welchen das ursprÄungliche Modell bereits gute Fits zeigte, werden diese Fits durch die Anpassungen im Modell sogar noch verbessert. Interessanterweise zeigen sich die größten Veränderungen des dynamischen Abschirm-Faktors bei niedrigen Photonen{Energien, also im Bereich des ¼-Plasmons. Betrachtet man den Querschnitt dieses Fulleren Modells, so zeigt der Querschnitt Eigenschaften die den vier Ober°Äachen{Plasmon{Moden des Fullerens zugeordnet werden. Vergleicht man dies mit anderen theoretischen Arbeiten [12] und einer Sammlung verschiedener experimenteller Messungen [10], so zeigt sich, dass alle SchlÄussel{Eigenschaften des Querschnittes in unserem Modell vorhanden sind. Abschlie¼end wurde die Abhängigkeit des dynamische Abschirm-Faktors von der Position des endohedralen Atoms innerhalb des Fullerens anhand zweier Fallstudien, Ar@C60 und Ar@C240 [3, 4], untersucht. Die Ergebnisse zeigen, dass der dynamische Abschirmfaktor relativ unempfindlich gegenüber Veränderung des Positions-Winkels des Atoms ist. Die radiale Position hingegen stellte sich als sehr wichtig heraus. Je mehr sich das Atom der Fulleren-Hülle nähert, desto grösser wird der dynamische Abschirmfaktor. Diese Studien zeigen, dass es notwendig ist, eine Art räumlichen Mittelwertes für den dynamische Abschirmfaktor zu bestimmen, um sichtbare Resultate zu erhalten. Im Rahmen dieser Arbeit wurde daher eine Methode für solch einen Mittelwert entwickelt [3, 4]. Neben der Untersuchung des dynamische Abschirm-Faktors wurde auch ein Vergleich mit experimentellen Messungen erarbeitet. Im Falle von Ce@C82 war die Photon{Energiespanne sehr hoch, weit über der Plasmon-Energie des Fullerens. Das Fulleren sollte daher für eine solche Bestrahlung durchlässig sein, und daher würde man keinen dynamischen Abschirmungs-Effekt finden können. Der Vergleich für Sc3N@C80 ist komplizierter. Da es sich dabei um ein rein klassisches Modell handelt, muss man achtgeben, es nicht mit dem vollständig freien Komplex zu vergleichen, sondern zusätzlich quanten{mechanische Effekte aus Confinements, wie zum Beispiel Elektronen{Transfers, miteinzubeziehen. Zudem ist das aktuelle Modell zu dynamischer Abschirmung nicht für Moleküle, sondern nur für einzelen Atomeentwickelt worden. Ein erster naiver Vergleich, in welchem der Endohedrale Komplex als Pseudo{Atom modelliert wurde, konnte die breite Struktur der experimentellen Ergebnisse nicht wiedergeben. Berechnungen des dynamischen Abschirmfaktors und des daraus resultierenden Querschnittes für ein einzelnes Scandium{Ion zeigte, dass auch räumliches Mitteln nicht ausreicht um die experi-mentellen Beobachtungen erklären zu können. Die Anwesenheit des Fullerens führt zur Öffnung eines neuen Kanals innerhalbdes Auger Prozesses [6, 11] und damit zur Verbreiterung der atomaren Spektrallinienweite. Berücksichtigt man diesen Effekt, so kann die ÄAhnlichkeit zu den experimentellen Ergebnissen deutlich erhöht werden. Allerdings ist es wichtig dabei auch die räumlichen Abhängigkeiten des Effekts, wie auch die der dynamischen Abschirmung, zu beachten. Erste vorläufige Ergebnisse deuten an, dass die beiden genannten Effekte, zumindest teilweise, dabei helfen können, die experimentell gefunden Ergebnisse zu erklären. Unser Modell zur Berechnung des dynamischen Abschirmfaktors liefert eine detaillierte Beschreibung und mögliche Erklärungen der diskutierten Phänomene, welche über die bisherige Arbeiten in der theoretischen Literatur hinausgehen. Die wichtigen Eigenschaften der experimentellen Arbeiten konnten mit dem Modell reproduziert werden, und mit der Verbreiterung der atomaren Spektrallinienweite und der dynamischen Abschirmung konnten wir zwei Effekte als mögliche bisher nicht berücksichtigete Erklärungen für einige dieser Eigenschaften herausarbeiten.
The lipidome of the marine hyperthermophilic archaeon Pyrococcus furiosus was studied by means of combined thin-layer chromatography and MALDI-TOF/MS analyses of the total lipid extract. 80–90% of the major polar lipids were represented by archaeol lipids (diethers) and the remaining part by caldarchaeol lipids (tetraethers). The direct analysis of lipids on chromatography plate showed the presence of the diphytanylglycerol analogues of phosphatidylinositol and phosphatidylglycerol, the N-acetylglucosamine-diphytanylglycerol phosphate plus some caldarchaeol lipids different from those previously described. In addition, evidence for the presence of the dimeric ether lipid cardiolipin is reported, suggesting that cardiolipins are ubiquitous in archaea.
Natural science is only just beginning to understand the complex processes surrounding transcription. Epitranscriptional regulation is in large parts conveyed by transcription factors (TFs) and two recently discovered small RNA (smRNA) species: microRNAs (miRNAs) and transfer RNA fragments (tRFs). As opposed to the fairly well-characterised function of TFs in shaping the phenotype of the cell, the effects and mechanism of action of smRNA species is less well understood. In particular, the multi-levelled combinatorial interaction (many-to-many) of smRNAs presents new challenges to molecular biology. This dissertation contributes to the study of smRNA dynamics in mammalian cells in several ways, which are presented in three main chapters.
I) The exhaustive analysis of the many-to-many network of smRNA regulation is reliant on bioinformatic support. Here, I describe the development of an integrative database capable of fast and efficient computation of complex multi-levelled transcriptional interactions, named miRNeo. This infrastructure is then applied to two use cases. II) To elucidate smRNA dynamics of cholinergic systems and their relevance to psychiatric disease, an integrative transcriptomics analysis is performed on patient brain sample data, single-cell sequencing data, and two closely related in vitro human cholinergic cellular models reflecting male and female phenotypes. III) The dynamics between small and large RNA transcripts in the blood of stroke victims are analysed via a combination of sequencing, analysis of sorted blood cell populations, and bioinformatic methods based on the miRNeo infrastructure. Particularly, importance and practicality of smRNA:TF:gene feedforward loops are assessed.
In both analytic scenarios, I identify the most pertinent regulators of disease-relevant processes and biological pathways implicated in either pathogenesis or responses to the disease. While the examples described in chapters three and four of this dissertation are disease-specific applications of miRNeo, the database and methods described have been developed to be applicable to the whole genome and all known smRNAs.
RNA-sequencing analyses are often limited to identifying lowest p-value transcripts, which does not address polygenic phenomena. To overcome this limitation, we developed an integrative approach that combines large scale transcriptomic meta-analysis of patient brain tissues with single-cell sequencing data of CNS neurons, short RNA-sequencing of human male- and female-originated cell lines, and connectomics of transcription factor- and microRNA-interactions with perturbed transcripts. We used this pipeline to analyze cortical transcripts of schizophrenia and bipolar disorder patients. While these pathologies show massive transcriptional parallels, their clinically well-known sexual dimorphisms remain unexplained. Our method explicates the differences between afflicted men and women, and identifies disease-affected pathways of cholinergic transmission and gp130-family neurokine controllers of immune function, interlinked by microRNAs. This approach may open new perspectives for seeking biomarkers and therapeutic targets, also in other transmitter systems and diseases.
RNA sequencing analyses are often limited to identifying lowest p value transcripts, which does not address polygenic phenomena. To overcome this limitation, we developed an integrative approach that combines large-scale transcriptomic meta-analysis of patient brain tissues with single-cell sequencing data of CNS neurons, short RNA sequencing of human male- and female-originating cell lines, and connectomics of transcription factor and microRNA interactions with perturbed transcripts. We used this pipeline to analyze cortical transcripts of schizophrenia and bipolar disorder patients. Although these pathologies show massive transcriptional parallels, their clinically well-known sexual dimorphisms remain unexplained. Our method reveals the differences between afflicted men and women and identifies disease-affected pathways of cholinergic transmission and gp130-family neurokine controllers of immune function interlinked by microRNAs. This approach may open additional perspectives for seeking biomarkers and therapeutic targets in other transmitter systems and diseases.
The physiotherapist plays an essential role for people with haemophilia, an inherited bleeding disease responsible for musculoskeletal complications. Yet, with the advent of new and advanced therapies, the medical landscape is changing, and physiotherapy must adapt alongside. This paper considers whether there will still be a need for physiotherapy in the era of advanced therapies, and discusses ways in which services should evolve to complement emerging treatment paradigms for haemostasis in people with haemophilia. Ultimately, physiotherapy will remain an important element of care, even for people with little joint damage and low risks in the era of the new mild phenotype. However, competencies will need to evolve, and physiotherapists in both primary care and specialist treatment centres should work with haematology colleagues to develop more sensitive tools for detecting early joint changes. Physiotherapists will also play a crucial role in counselling and physically coaching, monitoring the musculoskeletal status of people with haemophilia who have transitioned to new treatments.
Cytotoxic T lymphocytes eliminate infected cells upon surface display of antigenic peptides on major histocompatibility complex I molecules. To promote immune evasion, UL49.5 of several varicelloviruses interferes with the pathway of major histocompatibility complex I antigen processing. However, the inhibition mechanism has not been elucidated yet. Within the macromolecular peptide-loading complex we identified the transporter associated with antigen processing (TAP1 and TAP2) as the prime target of UL49.5. Moreover, we determined the active oligomeric state and crucial elements of the viral factor. Remarkably, the last two residues of the cytosolic tail of UL49.5 are essential for endoplasmic reticulum (ER)-associated proteasomal degradation of TAP. However, this process strictly requires additional signaling of an upstream regulatory element in the ER lumenal domain of UL49.5. Within this new immune evasion mechanism, we show for the first time that additive elements of a small viral factor and their signaling across the ER membrane are essential for targeted degradation of a multi-subunit membrane complex.
Following treatment with the β-galactosidase inducer [methyl-3H] -thiogalactoside, an induceracceptor-complex was isolated from extracts of E. coli K 12 using DEAE cellulose chromatography. Enzymatic digestion with trypsin suggested that the inducer was bound to a protein component.
Specific radioactive peaks demonstrated acceptor activity in the inducible strains E. coli K 12 and ML 3, but different results were obtained using the non-inducible mutants ML 35, ML 308 and ML 309.
The potent inhibitor of TMG-induction, o-nitrophenylfucoside, reduced the radioactive acceptor peak and caused a similar inhibition of β-galactosidase synthesis, p-nitrophenylfucoside was ineffective.
Further evidence is presented for the in vitro formation of an inducer-acceptor-complex in cell free extracts of E. coli K 12.
Methylthio-β.ᴅ-galaktosid wird in E. coli K 12, sowie in den Mutanten ML 3 und ML 308 in vivo zu einem geringen Teil in einen Phosphorsäureester, wahrscheinlich das 6-Phosphat (TMG-P) umgewandelt. TMG-P wird von E. coli K 12 aufgenommen, wirkt jedoch nicht als Induktor des Lactose-Operons. Zellfreie Extrakte aus E. coli K 12 geben die gleiche Reaktion, wobei die in vitro-Reaktion durch anorganisches Phosphat und Phosphoenolpyruvat stimuliert wird.
At pH 5.3 and 4.5 the half life of valyl-, threonyl-, leucyl- and seryl-tRNA from E. coli K 12 is significantly higher than at pH 6.8. While no changes were observed in the MAK elution patterns of valyl- and threonyl-tRNA, leucyl-tRNA was eluted in two peaks at pH 6.8 and 5.3 and in one broad peak at pH 4.5. Seryl-TRNA - two peaks at pH 6.8 - was separated in three peaks at pH 5.3 and 4.5. Rechromatography of these peaks at the other pH suggests the existence of at least four species of seryl-tRNA in E. coli K 12.
It is possible to determine the anomeric configuration of nucleosides by a simple, spectrophotometric assay, using the nucleoside phosphorylase activity of cell-free extracts from E. coli. β-nucleo-sides are split, a-anomers remain unchanged. For a single estimation 20-40 µg of nucleoside are required. 6-Azauracil- and 8-azaguanine-β-ᴅ-riboside and some nucleoside phosphates are resistant, a fact, which is of interest in view of the specificity of nucleoside phosphorylases.
The nuclear charge form factgr from the high-energy elastic electron scattering on 6Li has been calculated from the modified independent-particle shell model (IPSM) wave function. The usual harmonic oscillator type IPSM wave function has been modified by the inclusion of a nucleon-nucleon correlation function which involves extra-core nucleons only. The technique is extremely simple and provides an excellent agreement with the experimental data.
Highlights
• We present a novel alternative to the die-in-the-cup experiment.
• Participants’ payoffs depend on their reported mothers’ birthdays.
• We find that subjects lied to obtain real monetary payoffs.
• The extent of lying is small and insensitive to several design variations.
Abstract
We ask a representative sample of German household decision-makers to enter their mother's birthday, with potential payments depending on the month and the day they state. Thus, we create an incentive to lie. Compared to the die-under-the-cup experiment, our alternative has a lower probability that the income-maximizing outcome is true. Furthermore, it is better suited for online surveys and samples in which gambling is socially stigmatized. We conduct different variations of this game to crystalize design recommendations for researchers interested in our tool. Participants lied to receive higher payoffs, but only with real monetary incentives and only to a relatively small extent. Our results are largely insensitive to several design elements that we vary, such as the probability of being paid and the magnitude of the payoffs.
The Ecosystem Service approach has gained a lot of attention lately, as it interlinks ecosystems with the benefits humans derive from them. The Knowledge Flow paper at hand is giving a first overview of the Ecosystem Service approach. The paper focuses on the basic understanding of the concept and the definition of the term Ecosystem Services. It serves as a starting point for the development of a multiple classification system as a tool for ecosystem service inventories, assessment, and valuation studies. The paper briefly deals with the opportunities and challenges of an economic valuation of ecosystem services and provides the main research questions concerning an ecological assessment of ecosystems services.
Der Verlust biologischer Vielfalt und ökosystemarer Dienstleistungen (ecosystem services, ESS) kann im Wesentlichen auf die nicht-nachhaltige Nutzung der Biosphäre durch den Menschen zurückgeführt werden. Eine Betrachtung der ökonomischen Gründe für die degradierende Nutzung sowie möglicher Instrumente dem Verlust zu begegnen, bilden den Gegenstand dieses Knowledge Flow Papers. Das Paper knüpft damit an das Knowledge Flow Paper Nr. 6 an, indem eine erste Einführung in das Thema Ecosystem Services gegeben wurde, wobei eine Fokussierung auf der Definition und den Kriterien für eine Klassifizierung von ESS lag. Im vorliegenden Paper wird zunächst beschrieben, worin die Ursachen des Verlustes biologischer Vielfalt und ESS aus umweltökonomischer Sicht liegen. Es werden dazu wesentliche ökonomische Problematiken skizziert: der öffentliche Gutscharakter vieler Umweltgüter sowie das Auftreten sog. externer Effekte, die zu Marktversagen führen. In dem darauf folgenden Abschnitt werden umweltpolitische Instrumente als Lösungsansätze für diese Problematiken erörtert. Der Schwerpunkt liegt auf den sog. Payments for Ecosystem Services (PES), ein umweltökonomisches Regulationsinstrument, das seit einigen Jahren global zunehmend Anwendung findet. ...
Die Maßnahmen zum Klimaschutz zielen nach der UN-Klimarahmenkonvention auf eine Stabilisierung der Treibhausgaskonzentrationen in der Atmosphäre auf einem Niveau, bei dem eine gefährliche anthropogene Störung des Klimasystems verhindert wird. Eine Möglichkeit zur Stabilisierung ist die Durchführung von Kompensationsprojekten, die Emissionen verringern oder der Atmosphäre Treibhausgase (THG) entziehen und somit die Klimabilanz einer Aktivität neutralisieren, sofern die Klimaschutzmaßnahme nicht ohnehin durchgeführt worden wäre, sondern nur aufgrund der im Rahmen des Projektes zur Verfügung gestellten finanziellen Mittel realisiert wurde. Bei den Maßnahmen, die zur Vermeidung oder Entfernung von THG in Betracht kommen, lassen sich die Waldprojekte mit der biologischen Speicherung von Kohlenstoff von technischen Projekten (Filterung von Industriegasen, Sammlung von Methan, Maßnahmen zur Energieeffizienz und Einführung erneuerbarer Energien) unterscheiden. Nach Berechnung des IPCC stammen aus dem Sektor Landwirtschaft etwa 13,5% und aus Entwaldung ca. 17,4% der anthropogen bedingten THG-Emissionen. Klimaschutzprojekte im Bereich der biologischen Speicherung zielen darauf ab, die Aufnahme von CO2 in Biomasse und Böden, durch Aufforstung und nachhaltiges Management zu erhöhen, sowie Emissionen aus Entwaldung durch den Schutz stehender Wälder zu verringern. ...
Allgemein ist anerkannt, dass gute Kompensationsprojekte nicht nur Kohlenstoff festlegen, sondern möglichst weitere Nachhaltigkeitsleistungen aufweisen, die jedoch bisher bei der Durchführung und der Bewertung der Projekte häufig nicht angemessen berücksichtigt werden. In der vorliegenden Untersuchung wird erhoben, ob brauchbare Indikatoren vorliegen, die zur Bewertung weiterer ökologischer und sozialer Nutzen derartiger Projekte verwendet werden können.
Um den Kritiken gegenüber Waldprojekten zu begegnen, sollten Indikatoren zur Bewertung der Projekte möglichst so gewählt werden, dass sich mit ihnen auch räumliche Verlagerungseffekte erfassen lassen. Ebenso wichtig ist die Betrachtung ausreichender Zeiträume Waldprojekte haben aufgrund der langen Lebensdauer von Bäumen eine längere Laufzeit, als sie derzeit in vielen Bewertungssystemen berücksichtigt wird. Der langfristige Sequestrierungseffekt eines Projektes hängt entscheidend davon ab, ob das Holz alter Bäume im Wald wieder in den Kohlenstoffkreislauf kommt oder dem Wald entzogen wird. Bei ausschließlicher energetischer Nutzung des Holzes und auch bei Verarbeitung zu Zellstoff, Papier und Pappe wird kurze Zeit nach der Holzernte wieder Kohlendioxid freigesetzt. Dagegen schlagen langlebige Nutzungen des Holzes und insbesondere eine tatsächliche Substitution von Produkten aus Erdöl und Erdgas positiv zu Buche.
Wichtige Zusammenhänge bestehen zwischen dem Kohlendioxid-Minderungspotential von Waldprojekten und deren erheblichen ökologischen und sozialen Nutzen; diese entstehen bei optimalem Management in einer Art Ko-Produktion und sollten bewusst gestaltet werden; entsprechende Trade-offs sind bekannt.
Für die Beschreibung der gesamtökologischen und der sozialen Leistungen von Waldprojekten kann weitgehend auf bereits bekannten Kriterien aufgebaut werden; sie sollten aber um die Betrachtung der relevanten Ökosystemdienstleistungen ergänzt werden. Die Kohlenstofffestlegung ist eng mit zahlreichen dieser Ökosystemdienstleistungen (z.B. Humusbildung, Pufferungspotential gegenüber Stickstoff usw.) verknüpft. Waldprojekte mit hoher Biodiversität sind zudem in der Regel besser in der Lage, das Kriterium der Permanenz eines Kohlenstofflagers zu erfüllen. Auch lassen sich über die Ökosystemdienstleistungen bisher ausgeblendete sozio-kulturelle Dimensionen besser als bisher einbeziehen.
Auf diese Weise lässt sich die Darstellung der Nachhaltigkeitsleistung von Waldprojekten auf eine breitere Basis als bisher stellen – sowohl in ökologischer als auch in sozialer Hinsicht können die Kriterienkataloge der bisherigen Standards erweitert werden, die besonders auf Umweltwirkungen und sozioökonomische Effekte abheben. In den meisten Fällen sind bereits ausreichend geeignete Indikatoren bzw. Parameter vorhanden, um weitere wichtige Leistungen der Waldprojekte nachvollziehbar zu beschreiben. Für einige der betrachteten Dimensionen und Kriterien sind bisher noch keine Indikatoren vorhanden; zumeist gibt es aber auch dort Parameter, die Situationen anzeigen, welche unter Umständen genauer betrachtet werden müssten.
Bisher liegen keine allgemein anerkannten Standards hinsichtlich der Nachhaltigkeitskriterien von Waldprojekten vor. Eine neuerliche Debatte über eine Erweiterung des Kriteriensets ist notwendig, damit die zugehörigen Leistungsindikatoren allgemein akzeptiert werden. Diese Diskussion sollte jenseits der Nachhaltigkeitsleistungen der Waldprojekte selbst auch deren Vergleichbarkeit mit technischen Kompensationsprojekten im Blick haben. Die Kriteriendebatte war bisher durch die technischen Projekte dominiert und leider auch auf deren Bewertung verengt. Anders als technische Projekte haben Waldprojekte häufig sowohl für den Naturhaushalt als auch für die Gesellschaft viele weitere Nutzen, die eine nachhaltige Entwicklung begünstigen. Diese werden aber bisher nur unzureichend für die Qualitätssicherung und Kommunikation der Projekte genutzt.
Analog zum Gold Standard (GS) sollten die diskutierten Kriterien zu einem Standard für Waldprojekte verknüpft werden, mit dem sich die Nachhaltigkeitsleistungen dieser Kompensationsprojekte verlässlich bestimmen und überprüfen lassen. In Testläufen könnten die identifizierten Kriterien und Indikatorvorschläge erprobt und dabei modifiziert bzw. verfeinert werden.
We investigate the applicability of the well-known multilevel Monte Carlo (MLMC) method to the class of density-driven flow problems, in particular the problem of salinisation of coastal aquifers. As a test case, we solve the uncertain Henry saltwater intrusion problem. Unknown porosity, permeability and recharge parameters are modelled by using random fields. The classical deterministic Henry problem is non-linear and time-dependent, and can easily take several hours of computing time. Uncertain settings require the solution of multiple realisations of the deterministic problem, and the total computational cost increases drastically. Instead of computing of hundreds random realisations, typically the mean value and the variance are computed. The standard methods such as the Monte Carlo or surrogate-based methods are a good choice, but they compute all stochastic realisations on the same, often, very fine mesh. They also do not balance the stochastic and discretisation errors. These facts motivated us to apply the MLMC method. We demonstrate that by solving the Henry problem on multi-level spatial and temporal meshes, the MLMC method reduces the overall computational and storage costs. To reduce the computing cost further, parallelization is performed in both physical and stochastic spaces. To solve each deterministic scenario, we run the parallel multigrid solver ug4 in a black-box fashion.
Objective: To investigate the impact of HPV status in patients with locally advanced head and neck squamous cell carcinoma (HNSCC), who received surgery and cisplatin-based postoperative radiochemotherapy.
Materials and methods: For 221 patients with locally advanced squamous cell carcinoma of the hypopharynx, oropharynx or oral cavity treated at the 8 partner sites of the German Cancer Consortium, the impact of HPV DNA, p16 overexpression and p53 expression on outcome were retrospectively analysed. The primary endpoint was loco-regional tumour control; secondary endpoints were distant metastases and overall survival.
Results: In the total patient population, univariate analyses revealed a significant impact of HPV16 DNA positivity, p16 overexpression, p53 positivity and tumour site on loco-regional tumour control. Multivariate analysis stratified for tumour site showed that positive HPV 16 DNA status correlated with loco-regional tumour control in patients with oropharyngeal carcinoma (p = 0.02) but not in the oral cavity carcinoma group. Multivariate evaluation of the secondary endpoints in the total population revealed a significant association of HPV16 DNA positivity with overall survival (p < 0.01) but not with distant metastases.
Conclusions: HPV16 DNA status appears to be a strong prognosticator of loco-regional tumour control after postoperative cisplatin-based radiochemotherapy of locally advanced oropharyngeal carcinoma and is now being explored in a prospective validation trial.
[Nachruf] Norbert Simon
(2013)
Dies ist der zehnte Artikel unseres Blogfokus „Salafismus in Deutschland“.
Was macht salafistisches Denken in religiöser Hinsicht aus? Was hat Salafismus mit Wahhabismus zu tun? Was hat Dschihadismus mit Salafismus zu tun? Alles Fragen, auf die es keine einfachen Antworten gibt. Trotzdem lohnt der Versuch, eine Antwort zu geben, da die religiösen Vorstellungen zentral für die Identität des Salafismus sind. Es geht hier „nur“ um die religiösen Ideen, die immer wieder in salafistischen Diskussionen auftreten. Freilich ist die innersalafistische Debatte vielgestaltig, so dass sich kein „Katechismus“ aufstellen lässt, der ausweist, woran ein/e SalafistIn glaubt. Deshalb werden im Folgenden entlang einzelner Stränge des salafistischen Diskurses ausgewählte religiöse Ideen beleuchtet....
Wird von Terrorismusbekämpfung gesprochen, ist der Fokus auf nationale Problemlösungen gerichtet. Bei modernen Formen des Terrorismus handelt es sich zumeist um transnationale Phänomene, denen auch transnational begegnet werden muss. Zwei Beispiele zeigen die Probleme, die aus einer nationalen Beschränkung entstehen...
Entstanden in einem Milieu aus exklusivistischen islamischen Bewegungen, baut die Gewalttheologie der dschihadistischen Organisationen wie der al-Qa‘ida oder des IS auf eine Geschichtstheologie, welche Verfalls- und Dekadenzdiagnosen über die Situation der islamischen Welt und der Muslime mit eschatologischen Elementen verknüpft. In der Konsequenz müsse diese Dekadenz zum Zerfall der Welt und zum Anbruch der Endzeit führen, als deren kämpfende Avantgarde und notwendige Vorbedingung sich die dschihadistischen Akteure stilisieren. Videos mit identifizierbaren erzählerischen Elementen gehören dabei zu zentralen Mitteln der dschihadistischen Kommunikation. Anhand eines Fallbeispiels untersucht der Artikel die geschichts- und gewalttheologisch geprägten Strukturen der IS-Videopropaganda. Zugleich wird auf im muslimischen Spektrum generierte Alternativen zu dieser exklusivistischen Geschichtstheologie verwiesen, die nicht von einem sich in der Geschichte enthüllenden ‘Heilsplan’ Gottes ausgehen, sondern auf der Prämisse der Unabgeschlossenheit und der offenen Bewegung menschlichen Denkens beruhen und damit eine Epistemologie anbieten, die nicht Spielarten des Identitären befördert.