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The taxonomic status of recently described Isophya taxa from Serbia (Tettigoniidae, Phaneropterinae)
(2024)
During recent decades, increasing research of the taxonomy of the genus Isophya resulted in taxonomic descriptions of several new species. The delimitation of these species is mainly based on oscillographic song analysis of the male song in combination with morphological characters, such as the shape of male cerci, tegmina and ovipositor. In the present paper, we used an integrative taxonomic approach in order to resolve the status of four recently described Isophya taxa from Serbia. Based on our molecular and bioacoustic analyses, all analyzed taxa belong to a single species: Isophya modestior. The majority of the morphological characters used to differentiate the taxa showed strong intra- and interpopulational variability, proving that describing new species within the genus Isophya should not rely on morphological characters alone, but needs to consider bioacoustic analyses as the main tool and a larger series of specimens.
In the vast abyssal plains northwest of Iceland, white glass sponges of the genus Caulophacus Schulze, 1886 were inhabited by reddish Bythocaris G.O. Sars, 1870 shrimps and pinkish amphipods. After in situ observations at 3700 m depth, in -1°C waters by a remotely operated vehicle, members of this assemblage were collected and preserved for molecular studies. Based on integrative taxonomic analyses, the amphipods were identified as a new species of the genus Halirages Boeck, 1871 – Halirages spongiae sp. nov. Lörz, Nack & Tandberg –, as described in detail below. Part of our integrative approach was to establish reference DNA barcodes for known species of Halirages. However, our investigation of material of Calliopiidae G.O. Sars, 1895 collected around Iceland and Norway revealed slight morphological discrepancies in all the described species of Halirages. Except for Halirages fulvocinctus (M. Sars, 1858), none of the encountered specimens of Calliopiidae fully matched a current species description. We illuminate the morphological characteristics of nine operational taxonomic units, which also represented clades in COI and 28S. We set the Icelandic samples in the context of Halirages from Canada and Norway. A key to the world species of Halirages is provided.
Though recent investigations have contributed substantially to our understanding of the Alpine-Dinaric radiation of the genus Zospeum Bourguignat, 1856, its southernmost member, Zospeum troglobalcanicum Absolon, 1916, has remained a taxonomic ghost. The assumed absence of type material, the insufficient original description, and the lack of new samples from its Western Balkan type locality have stymied further clarification. The recent discovery of a single syntype shell housed at the Natural History Museum Vienna now enables the first morphological assessment via 3D X-ray and SEM imaging. Based on this image data, different characters for assessing the southernmost members of the genus are determined and a lectotype is designated. Eleven allied species from 15 Western Balkan populations are described from museum material and recent sampling efforts: Z. amplioscutum Jochum & Ruthensteiner sp. nov., Z. biokovoense Jochum & Ruthensteiner sp. nov., Z. constrictum Jochum & Ruthensteiner sp. nov., Z. dubokidoense Jochum & Ruthensteiner sp. nov., Z. intermedium Jochum & Ruthensteiner sp. nov., Z. kolbae Jochum, Inäbnit, Kneubühler & Ruthensteiner sp. nov., Z. neuberti Jochum & Ruthensteiner sp. nov., Z. njegusiense Jochum & Ruthensteiner sp. nov., Z. njunjicae Jochum, Schilthuizen & Ruthensteiner sp. nov., Z. tortuosum Jochum & Ruthensteiner sp. nov. and Z. tumidum Jochum, Schilthuizen & Ruthensteiner sp. nov. One species, Z. kolbae, is described using DNA sequence data and one species, Z. simplex Inäbnit, Jochum & Neubert, 2021 for which DNA sequence data is already available, is supported by morphological data presented in this study. The DNA sequence dataset (COI, 16S and H3) is included here and implemented in the most recent phylogenetic reconstruction of the genus. A translation of Karel Absolon’s notes from the Balkan scientific expeditions is provided.
The genus Plateosaurus is one of the most challenging aspects of early-diverging sauropodomorph taxonomy, with a total of 29 names and a century of revisions. As a result, nomina dubia have been treated as synonyms of Plateosaurus trossingensis, adding to the confusion about the extent of morphological variability. Here, we provide a thorough revision of the taxonomy proposed by von Huene as well as the subsequent taxonomic interpretations of Plateosaurus through a complete inventory of the specimens stored in the Palaeontological Collection of Tübingen. We reassess the status of the specimens in the collection and propose that the sauropodomorph-bearing layers are not necessarily monospecific. Most of the original fieldwork documentation has been lost, but we use the taxonomy established by von Huene as a historical reference point to reconstruct what was known at the time. This revised taxonomy of Plateosaurus narrows the genus to three species: Pl. trossingensis, Pl. longiceps, and Pl. gracilis (as a metataxon), and restricts the genera Gresslyosaurus and Pachysaurus to large and robust individuals, as pragmatic decisions aimed to test their affinities to other Late Triassic sauropodomorphs. Future studies should consider not only morphological variability, but also stratigraphy, palaeogeography, and environmental data when delineating species within and outside the Plateosaurus plexus.
Molluscs are the second most species-rich phylum in the animal kingdom, yet only 11 genomes of this group have been published so far. Here, we present the draft genome sequence of the pulmonate freshwater snail Radix auricularia. Six whole genome shotgun libraries with different layouts were sequenced. The resulting assembly comprises 4,823 scaffolds with a cumulative length of 910 Mb and an overall read coverage of 72×. The assembly contains 94.6% of a metazoan core gene collection, indicating an almost complete coverage of the coding fraction. The discrepancy of ∼690 Mb compared with the estimated genome size of R. auricularia (1.6 Gb) results from a high repeat content of 70% mainly comprising DNA transposons. The annotation of 17,338 protein coding genes was supported by the use of publicly available transcriptome data. This draft will serve as starting point for further genomic and population genetic research in this scientifically important phylum.
One of the major problems in evolutionary biology is to elucidate the relationships between historical events and the tempo and mode of lineage divergence. The development of relaxed molecular clock models and the increasing availability of DNA sequences resulted in more accurate estimations of taxa divergence times. However, finding the link between competing historical events and divergence is still challenging. Here we investigate assigning constrained-age priors to nodes of interest in a time-calibrated phylogeny as a means of hypothesis comparison. These priors are equivalent to historic scenarios for lineage origin. The hypothesis that best explains the data can be selected by comparing the likelihood values of the competing hypotheses, modelled with different priors. A simulation approach was taken to evaluate the performance of the prior-based method and to compare it with an unconstrained approach. We explored the effect of DNA sequence length and the temporal placement and span of competing hypotheses (i.e. historic scenarios) on selection of the correct hypothesis and the strength of the inference. Competing hypotheses were compared applying a posterior simulation analogue of the Akaike Information Criterion and Bayes factors (obtained after calculation of the marginal likelihood with three estimators: Harmonic Mean, Stepping Stone and Path Sampling). We illustrate the potential application of the prior-based method on an empirical data set to compare competing geological hypotheses explaining the biogeographic patterns in Pleurodeles newts. The correct hypothesis was selected on average 89% times. The best performance was observed with DNA sequence length of 3500-10000 bp. The prior-based method is most reliable when the hypotheses compared are not temporally too close. The strongest inferences were obtained when using the Stepping Stone and Path Sampling estimators. The prior-based approach proved effective in discriminating between competing hypotheses when used on empirical data. The unconstrained analyses performed well but it probably requires additional computational effort. Researchers applying this approach should rely only on inferences with moderate to strong support. The prior-based approach could be applied on biogeographical and phylogeographical studies where robust methods for historical inferences are still lacking.
The Specialized Information Service Biodiversity Research (BIOfid) has been launched to mobilize valuable biological data from printed literature hidden in German libraries for over the past 250 years. In this project, we annotate German texts converted by OCR from historical scientific literature on the biodiversity of plants, birds, moths and butterflies. Our work enables the automatic extraction of biological information previously buried in the mass of papers and volumes. For this purpose, we generated training data for the tasks of Named Entity Recognition (NER) and Taxa Recognition (TR) in biological documents. We use this data to train a number of leading machine learning tools and create a gold standard for TR in biodiversity literature. More specifically, we perform a practical analysis of our newly generated BIOfid dataset through various downstream-task evaluations and establish a new state of the art for TR with 80.23% F-score. In this sense, our paper lays the foundations for future work in the field of information extraction in biology texts.
The finding of Breviconia andrei sp. nov. in the Russian Bering Sea enabled the clear-cut phylogenetic characterization of the former monotypic genus Breviconia Conroy-Dalton & Huys, 2000 as a monophylum. Comparison of the new species with B. australis (George, 1998) and other members of the subfamily Ancorabolinae Sars, 1909 yielded four autapomorphies that unambiguously support the monophyletic state of Breviconia: (1) an elongated and approximately 90°-curved mandibular gnathobase, (2) reduction of the maxillar endopod, (3) maxillar endites carrying 2 instead of 3 setae, and (4) loss of the minute seta on the maxillipedal claw. For B. andrei sp. nov., two autapomorphies could be detected, namely, (1) the development of dorsal tubercles on the P5-bearing body somite and (2) the remarkable elongation of the first endopodal segment of the first swimming leg that is twice as long as the whole exopod. Of particular interest is the presence of a 3-segmented endopod in the third swimming leg of the male of B. andrei sp. nov. It disproves the current assumption that the Ancorabolinae are characterized by (among others) the derived presence of an only 2-segmented endopod in the male’s third swimming leg.
In 23 survey areas with woodland vegetation or woodland succession in Frankfurt/Main with a total size of 134 hectares, woody species were surveyed (excluding species only occurring as planted individuals). We found 149 woody taxa; 42% of them indigenous, and 58% non-native. Out of the 86 non-native taxa, 49 were naturalized in Frankfurt while 37 were considered as casual. Among non-native taxa, East Asian taxa formed the largest phytogeographic group. We found taxa originating from horticulture (cultigens) to be an important part of the woody flora of Frankfurt/Main. The most common taxa were Acer pseudoplatanus, A. platanoides, Betula pendula, and Sambucus nigra; the two Acer species were regarded as naturalized. Non-native woody species were generally common (with percentages ranging from 24% to 79% in individual areas).
In the framework of an ongoing extensive phylogenetic evaluation of the Ceratonotus group (Copepoda, Harpacticoida, Cletodidae), Poropsyllus menzelae gen. et sp. nov. from the sublittoral of south-western Cyprus (eastern Mediterranean Sea) and Paratouphapleura aaroni gen. et sp. nov. from the western Weddell Sea (Antarctica) are described. Both new species fit the autapomorphies of the Ceratonotus group but cannot be assigned to any of the genera so far known. Instead, each new species presents a set of derived characters that justify their placement in new genera, Poropsyllus gen. nov. and Paratouphapleura gen. nov., respectively. Furthermore, a comparison of the species placed in Ceratonotus Sars revealed that because of exclusive morphological deviations, Ceratonotus concavus Conroy-Dalton, C. steiningeri George, C. tauroides George, and C. vareschii George should be excluded from Ceratonotus and transferred to a new monophylum, Tauroceratus gen. nov. Likewise, Polyascophorus monoceratus George, Wandeness & Santos is characterized by several apomorphies that justify its transfer from Polyascophorus to a new taxon, Pseudopolyascophorus gen. nov. The Ceratonotus group is therefore increased to 31 species assigned to 13 genera. The systematic modifications conducted and resulting phylogenetic consequences are discussed in detail.