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The Na+/proline transporter of E. Coli (PutP) is responsible for the uptake of proline which is subsequently used not only as a carbon and nitrogen source and a constituent of proteins but also as a particularly effective osmoprotectant. However, for a long time there was little known about the single steps in the reaction cycle of this transporter and only few details about its structure-function relationship are available. Aim of the present work was to achieve a deeper understanding about the kinetic properties of the Na+/proline transporter and to get insights into the structure-function relationship of the substrate binding. To answer these questions different techniques were used. By using the novel SSM technique combining the preparation of PutP proteoliposomes it was possible to demonstrate for the first time the electrogenic substrate binding to PutP transporter. Due to rapid solution exchange measurements on the SSM it was additionally possible to obtain time resolved information about the kinetic details of the cytoplasmic substrate binding sites which were not available by previous steady state and equilibrium binding measurements. Pre-steady-state charge translocation was observed after rapid addition of one or both of the cosubstrates Na+ and/or proline to the PutP-WT proteoliposomes adsorbed on the SSM. Thereby it was possible to link the observed electrical signals with the binding activity of PutP. The observed Na+ and/or proline induced charge displacement were assigned to an electrogenic Na+ and/or proline binding process at the cytoplasmic face of the enzyme with a rate constant of k > 50 s-1 proceeding the rate limiting step of the reaction cycle. Furthermore, based on the kinetic analysis of the electrical signals obtained from the measurements of PutP on SSM, the following characteristics of the substrates binding in PutP were deduced: (1) both Na+ and proline can bind individually to the transporter. Under physiological conditions, an ordered binding mechanism prevails; while at sufficiently high concentrations, each substrate can bind in the absence of the other; (2) substrate binding is electrogenic not only for Na+, but also for the uncharged cosubstrate proline. The charge displacement associated with Na+ binding and proline binding is of comparable size and independent of the presence of the respective cosubstrate. In addition, it was concluded that Na+ accesses its binding site through a high-field access channel resulting in a charge translocation, whereas the binding of the electroneutral proline induces a conformation alteration involving the displacement of charged amino acid residue(s) of the protein; (3) Na+ and proline binding sites interact cooperatively with each other by increasing the affinity and/or the speed of binding of the respective cosubstrate; (4) proline binding proceeds in a two step process: low affinity (~ 0.9 mM) electroneutral substrate binding followed by a nearly irreversible electrogenic conformational transition; (5) membrane impermeable PCMBS inhibits both Na+ and proline binding to the inside-out orientated PutP transporter, indicating that rather than selectively blocking a specific binding site, PCMBS probably locks the enzyme in an inactive state. The possible targets for this SH-reagent are cysteines 281 and 344 located close to the cytoplasmic surface of the protein. Beyond it, transient electrical currents of PutP were also observed on the BLM after rapid addition of proline in the presence of Na+. This was possible by combining the conventional BLM technique with high-speed flash-photolysis of caged-proline. Indeed the signals on the BLM indicate the detection of a different underlying reaction process in comparison to the data achieved by the SSM technique. This has paved the way for supplemental information about the reaction cycle since it was possible to assign the flash-photolysis BLM signals to the proline binding step followed by the internalization of Na+ and proline into the liposome. Thereby it was found, that the presence of Na+ is indispensable and the time constant for the process is ~ 63 ms. Moreover, structure-function information about the Na+ and proline binding sites of PutP was obtained by investigating the functionally important amino acid residues Asp55, Gly63 and Asp187 with site-directed mutagenesis and the combined SSM technique. One finding is that the mutated proteins PutP-D55C and PutP-G63C showed no activity on the SSM. Therefore, it can be assumed that either both Asp55 and Gly63 are crucial for the structure of PutP protein, or they are located at or close to the Na+ and proline binding sites. Furthermore, the results obtained from PutP-D187N and PutP-D187C mutants on SSM suggest that Asp187 of PutP is likely to be involved in the Na+ binding at the cytoplasmic side of the backward running carrier. Taken together the results of the present work have substantially broadened the known picture of the Na+/proline transporter PutP thereby several steps of the reaction cycle were elucidated, and moreover, valuable insights into the structure-function relationship of the transporter have become available.
The technique of site-specific fluorescence labelling with Tetramethylrhodaminemaleimide (TMRM) in combination with two electrode voltage-clamp technique (TEVC), an approach that has been named voltage clamp fluorometry (VCF), has been used in this work to study the Na,K-ATPase. The TMRM dye has the ability to attach covalently to cysteine residues and it responds to changes in the hydrophobicity of its local environment. We exploited this property using a construct of the Na-pump in which the native, extracellularly accessible cysteines were removed and cysteine residues were introduced by site-directed mutagenesis in specific positions of the Na-pump. In this way it was possible to detect site-specific conformational rearrangements of the Na-pump in a time-resolved fashion within a native membrane environment. In particular this technique allows to resolve reactions with low electrogenicity that cannot be satisfactorily analyzed with purely electrophysiological techniques and to identify the conformations of the enzyme under specific ionic composition of the measuring buffers. We used VCF to study the influence that several cations like Na+, K+, NMG+, TEA+ and BTEA+ exert on the distribution of the Na,K-ATPase between several enzymatic intermediates and on some of the reactions related to cation transport. To this end we utilized the mutants N790C in the loop M5-M6 and the mutant E307C, T309C, L311C and E312C in the loop M3-M4. From the correspondence of the fluorescence changes with the activation and inhibition of pumping current, by K+ and ouabain respectively, and from the fact that in Na+/Na+ exchange conditions the voltage distribution of charge movement and fluorescence changes evoked by voltage jumps are in reasonable agreement we conclude that through the fluorescence signals measured from these mutants, we can indeed monitor conformational changes linked to transport activity of the enzyme. For the mutants N790 and L311, it was found that the Na+ dependence of the amplitude and kinetics of the fluorescence signal associated with the E1P-E2P transition is in agreement with the prediction of an access channel model describing the regulation of the access of extracellular Na+ to its binding site. In particular for the mutants E307 and T309 it was found that in Na+/Na+ exchange conditions, the conformational change tracked by the fluorescence was much slower than the charge relaxation at hyperpolarized potentials while the kinetics was very similar at depolarized potentials. This implies that at hyperpolarized potentials the conformational change connected to the E1P-E2P transition does not give a large contribution to the electrogenicity of the process which is also consistent with the access channel model. On the mutant N790C it was found that the external pH does not seem to have any effect on the E1P-E2P equilibrium even if it seems to modulate the fluorescence quantum yield of the dye. Fluorescence quenching experiments with iodide and D2O indicate that at hyperpolarized potentials the local environment of the mutant N790C, experiences a small change in the accessibility to water without major changes in the local electrostatic field ...
The impact of naval sonar on beaked whales is of increasing concern. In recent years the presence of gas and fat embolism consistent with decompression sickness (DCS) has been reported through postmortem analyses on beaked whales that stranded in connection with naval sonar exercises. In the present study, we use basic principles of diving physiology to model nitrogen tension and bubble growth in several tissue compartments during normal div ng behavior and for several hypothetical dive profiles to assess the risk of DCS. Assuming that normal diving does not cause nitrogen tensions in excess of those shown to be safe for odontocetes, the modeling indicates that repetitive shallow dives, perhaps as a consequence of an extended avoidance reaction to sonar sound, can indeed pose a risk for DCS and that this risk should increase with the duration of the response. If the model is correct, then limiting the duration of sonar exposure to minimize the duration of any avoidance reaction therefore has the potential to reduce the risk of DCS.
This list of microscopic features for hardwood identification is the successor to the "Standard List of Characters Suitable For Computerized Hardwood Identification" published in 1981 (IAWA Bulletin n.s. 2: 99-145) with an explanation of the coding procedure by R.B. Miller. The 1981 publication greatly stimulated international exchange of information and experience on characters suitable for hardwood identification, and inspired considerable debate on the most desirable coding procedures and identification programs. Therefore, at the IA W A meeting during the XIV International Botanical Congress in Berlin, July 1987, it was decided to revise the 1981 standard list. Because of the continuing developments in computer technology and programming, it was agreed to limit the scope of the new list to definitions, explanatory commentary, and illustrations of wood anatomical descriptors, rather than concentrate on coding procedures. A new Committee was appointed by the IA W A Council to work towards the new list, and thanks to a substantial grant from the USDA Competitive Research Grants - Wood Utilization Program (Grant No. 88-33541-4081), a workshop was held by the Committee from October 2-7, 1988, in the Department of Wood & Paper Science, North Carolina State University, Raleigh, NC, USA, under the joint auspices of IA WA and IUFRO Division S. A preliminary list was prepared during the workshop. IA W A members were invited to comment on this list, and these comments helped with the final preparation of the new list. The list presented here was agreed to after review of subsequent drafts and extensive internal consultation between committee members. Although this list has 163 anatomical and 58 miscellaneous features, it is not a complete list encompassing all the structural patterns that one can encounter in hardwoods. Instead it is intended to be a concise list of features useful for identification purposes. Also, the numbers assigned to each feature in the present list are not meant to be codes for a computer program, but are intended to serve for easy reference, and to help translate data from one program/database to another. Wood and wood cells are biological elements, formed in trees, shrubs, and climbers to fulfill a physiological or mechanical function. Although there is more discrete diversity in wood structure than in many other plant parts, there is also much continuous variation, and any attempt to classify this diversity into well-defined features has an artificial element. Yet we are confident that in the feature list presented here ambiguity of descriptors has been limited to a minimum, and we hope that all present and future colleagues engaged in wood identification and descriptive wood anatomy will find this list a valuable guide and reference.
Welcome to Issue 82 of Australasian
Arachnology. The last six months have been
extremely productive for the Australasian
Arachnological Society, with nine new
members and numerous new papers being
published by existing AAS members. It is
wonderful to see such a dynamic and growing
membership, and to witness the continuing
fascination elicited by our remarkable arachnid
fauna. Indeed, since the beginning of 2011, over
50 new species of arachnids have been
described from Australasia, including pseudoscorpions
and numerous spiders in the families
Selenopidae, Archaeidae, Amaurobiidae, Tetragnathidae
and Araneidae. The sheer diversity
of undescribed arachnid species in Australasia
has always posed a challenge to systematists
and ecologists, but major attempts are being
made to document the fauna. Take, for example,
Pinkfloydia, a new genus of Tetragnathidae
recently described from Western
Australia!
Welcome to Issue 83 of Australasian
Arachnology. I’d like to begin this editorial by
once again noting the steady stream of new
members who are joining the society, and
observing (as always) the exemplary recent
research outputs in the Australasian region. The
Australasian arachnological community continues
to maintain a strong interest in our
remarkable arachnid fauna, and continues to
promote arachnology throughout the region.
This is by no means a straightforward task,
given the negative public perceptions that often
accompany our eight-legged friends, and given
the sometimes challenging research funding
environment for taxonomic and biodiversity
research. Certainly, having watched the society
grow over the last twenty years, and having
seen perceptions of the Australasian fauna
change during that time, it is both reassuring
and exciting to look ahead. With unparalleled
population growth throughout the region and
the world, and unprecedented pressures on our
natural landscapes, habitats and remaining
natural biomes, it is critical that arachnids (and
indeed all invertebrates) continue to receive the
growing recognition they deserve among
ecologists, conservation biologists, legislators
and the public at large. The 10th Invertebrate
Biodiversity and Conservation Conference in
Melbourne in December 2011 confirmed just
how active research in this field is, and there is
no doubt that Australasian arachnids will
continue to be the focus of much positive
attention over the next few years.
Welcome to Issue 84 of Australasian Arachnology. I’d like to begin this editorial by first making special mention of the late Doug Wallace OAM (1923-2012), who passed away in June this year. Doug was a founding member of the Australasian Arachnological Society, and would be further known to many as the founder and President of the long-running Rockhampton Arachnological Society. Robert Raven and I have written a small notice re. Doug’s passing in the General Announcements section (below), and Robert will contribute a full obituary for Doug in the following issue of the newsletter. Vale Doug – you will be sorely missed.