Archive for Bryology
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192
Comparative evaluation of antimicrobial activity of methanolic extract and phenolic compounds of a liverwort, Reboulia hemispherica was carried out by Agar well diffusion technique. The Gram positive bacteria were more sensitive than the Gram negative ones, while the fungal species were least sensitive. R. hemispherica extract exhibited best results against Staphylococcus aureus, although it was active against all tested microbes. The antimicrobial activity increased with the increase in the concentration of the extract except in Klebsiella sp. S. aureus, E. faecalis and Bacillus cereus were inhibited more by the crude methanol extract of R. hemispherica than the phenolic compounds isolated from the extract. A. niger was inhibited equally by the crude methanol extract as well as the phenolic compounds. B. subtilis, E. coli, P. aeruginosa, K. sp. and P. notatum were inhibited more by phenolic compounds than the crude methanol extract of R. hemispherica. Thus phenolic compounds of R. hemispherica should be studied further for use as antimicrobial agent.
183
In the past, many bryophyte species were regarded as endemic to the Alps. Herzog listed more than 70 examples. Many of them are micro-endemisms or merely alpine forms of other species (Leptodontium styriacum) and not of taxanomic value, or considered as relics from the last interglacial period, although the Alps were covered by glaciers during the last ice age, which made a survival almost impossible, especially for forest species and epiphytes. Several of these species turned out to occur as well in Asia (Distichophyllum carinatum) or were described from there under a different name (Tayloria rudolphiana as T. delavayi). So far, one important species, Brotherella lorentziana, remained unsolved. A recent study revealed that this species is present in Asia, where it is known as B. henonii. At the present state of knowledge, five species namely Herbertus sendtneri, Riccia breidleri, Barbula bicolor, Marsupella ramosa and Trochobryum carniolicum must still be considered as endemic.
190
Scanning electron microscope analyses of sporoderm of 7 species of 3 genera of Marchantiales are presented in this study. In the studied species, sporoderm exhibit a broad range of morphology and have taxonomic specificity. The structurally rigid sporoderms have specific sculpturing and characteristic patterning. Peculiar architectures are found in different taxa, which revealed that and stable architectures may be present within an order. Sporoderms usually have specific surface markings which are often one of the best parameters to identify any species.
191
Microsatellites also known as simple sequence repeats (SSRs) are short repeat motifs (1-6 bp) found in DNA sequences Detection of microsatellites is important for the development of molecular markers and to study the mapping of traits of economic, medical or ecological interest. In the present study, chloroplast genome sequence of Anthoceros formosae, downloaded from the National Center for Biotechnology Information (NCBI) was mined with the help of MISA tool to detect SSRs in chloroplast genome (cpSSRs). A total of 67 SSRs were detected with a density of 1 SSR/2.4 kb in 161.162 kb sequence mined. Depending on the repeat units, the length of SSRs ranged from 12 to 18 bp for mono-, 14 to 46 bp for di-, 12 to 27 bp for tri-, 12 to 20 bp for tetra and 18 bp for hexa-nucleotide repeats. Mononucleotide repeats were the most frequent repeat type (35.82%) followed by dinucleotide repeats (25.37%). Penta-nucleotide repeats were not detected in chloroplast genome sequence of Anthoceros formosae.
195
The identity of Braunia alopecura (Brid.) Limpr. with Braunia secunda (Hook.) Bruch & Schimp.
(2013)
Braunia alopecura, originally regarded as species endemic to the Southern Alps, later known in addition from the the Cape Verde Islands and recently reported from the Indohimalaya, has revealed to be identical with the neotropical Braunia secunda. This is another case of an American species in the Southern Alps and in Europe in general, as well as an example of possible long distance dispersal.
196
Mining of simple sequence repeats in chloroplast genome of a parasitic liverwort: Aneura mirabilis
(2013)
Aneura mirabilis is a parasitic liverwort with a chloroplast genome size of 108007 bp. In this study simple sequence repeats (SSRs) were detected using bioinformatics approch in plastid genome of Aneura mirabilis. Due to its small genome size only 19 repeats were detected showing a density of 1 SSR/5.68 kb. The length of SSRs ranged from 12 to 20 bp. Mononucleotide repeats were the most frequent repeat type (36.84%) followed by tetranucleotide repeats (31.58%). Moreover hexanucleotide repeats were absent in chloroplast genome sequence of Aneura mirabilis.
161
The present contribution is an enumerated account of mosses of Munsyari (Pithoragarh), Western Himalayas. The study revealed the presence 8 orders, 20 families, 32 genera and 44 species in the area. Moss species viz. Anoectangium walkeri Broth., Actinothuidium hookeri (Mitt.) Broth. Stereophyllum ligulatum Jaeg., Anomodon minor (Hedw.) Fŭrnr., Hageniells assamica Dixon, Schoenobryum cocavifolia (Griff.) Gang., Entodon luteonitens Ren. et Card. and Physcomitrium pulchellum (Grif.) Mitt. are reported for the first time from Munsiyari hills as well as western Himalayas as welcome additions to the bryoflora of Uttarakhand (Western Himalaya).
163
The availability of organelle genome sequences in public databases facilitates the reconstruction of land plants phylogeny. Therefore the present phylogenetic analysis was conducted using chloroplast genome sequences of plants to study phylogenetic relationship of bryophytes. The representative taxa were selected considering the availability of organelle genome sequences in database. Inferred tree topologies showed paraphyly of bryophytes with sister relationship between hornworts and vascular plants irrespective of the method (Maximum Likelihood and Bayesian Inference) and type of sequences (Nucleotide and Protein) used. Among bryophytes liverworts are the first to diverge therefore appeared as sister to land plants. Moreover land plants formed a monophyletic group.
199
The availability of organelle genome sequences of bryophytes provides opportunity to mine this data. Therefore in this study microsatellites in chloroplast genome sequence of Pellia endiviifolia (Accession number: NC_019628), downloaded from the National Center for Biotechnology Information (NCBI) in fasta format, were identified. The sequence was mined with the help of MISA, a Perl script, to detect microsatellites. In total, 16 perfect microsatellites were identified in 120.546 kb sequence mined. An average length of 14.94 bp was calculated for mined microsatellites with a density of 1 SSR/7.09 kb. Depending on the repeat units, the length of microsatellites ranged from 12 to 18 bp. Tetranucleotides (7, 43.75%) were the most frequent repeat type, followed by mononucleotide (3, 18.75%) repeats. Dinucleotide, trinucleotide and pentanucleotide repeats were found with equal frequency (2, 12.5%). Interestingly, hexanucleotide repeats were completely absent in chloroplast genome of Pellia endiviifolia.
198
Coscinodon humilis was described by Milde from mica schist in the Passeiertal NE Merano (formerly southern Tyrolia in Austria, hence cited as Austria by Greven 1995. now Alto Adige in Italy). Limpricht (1890) regarded it as “verkümmerte Form von C. cribrosus”, and although Mönkemeyer (1927) still cited it, the species got forgotten by the time. Thus the species was no more mentioned by Corley et al (1981) in the European checklist and therefore no more included by Frey et al. (1995) in the German edition of the “Moos- und Farnpflanzen Europas”. Greven (1995) re-established the species in his treatment of Grimmia (and related genera) in Europe. Therefore Frey et al. (2006) included the species, which was, however, not keyed out. Finally Hill et al. (2006) listed it again in the new European checklist as a good species.