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The methylome in females with adolescent Conduct Disorder: Neural pathomechanisms and environmental risk factors

  • Conduct Disorder (CD) is an impairing psychiatric disorder of childhood and adolescence characterized by aggressive and dissocial behavior. Environmental factors such as maternal smoking during pregnancy, socio-economic status, trauma, or early life stress are associated with CD. Although the number of females with CD is rising in Western societies, CD is under-researched in female cohorts. We aimed at exploring the epigenetic signature of females with CD and its relation to psychosocial and environmental risk factors. We performed HpaII sensitive genome-wide methylation sequencing of 49 CD girls and 50 matched typically developing controls and linear regression models to identify differentially methylated CpG loci (tags) and regions. Significant tags and regions were mapped to the respective genes and tested for enrichment in pathways and brain developmental processes. Finally, epigenetic signatures were tested as mediators for CD-associated risk factors. We identified a 12% increased methylation 5’ of the neurite modulator SLITRK5 (FDR = 0.0046) in cases within a glucocorticoid receptor binding site. Functionally, methylation positively correlated with gene expression in lymphoblastoid cell lines. At systems-level, genes (uncorr. P < 0.01) were associated with development of neurons, neurite outgrowth or neuronal developmental processes. At gene expression level, the associated gene-networks are activated perinatally and during early childhood in neocortical regions, thalamus and striatum, and expressed in amygdala and hippocampus. Specifically, the epigenetic signatures of the gene network activated in the thalamus during early childhood correlated with the effect of parental education on CD status possibly mediating its protective effect. The differential methylation patterns identified in females with CD are likely to affect genes that are expressed in brain regions previously indicated in CD. We provide suggestive evidence that protective effects are likely mediated by epigenetic mechanisms impairing specific brain developmental networks and therefore exerting a long-term effect on neural functions in CD. Our results are exploratory and thus, further replication is needed.
Metadaten
Author:Andreas Geburtig-ChiocchettiORCiDGND, Afsheen YousafORCiDGND, Regina WaltesGND, Anka BernhardGND, Anne MartinelliGND, Katharina Ackermann, Denise HaslingerGND, Björn RotterORCiD, Nico Krezdorn, Kerstin KonradORCiDGND, Gregor KohlsORCiDGND, Agnes Vetro, Amaia HervásORCiD, Aranzazu Fernández-Rivas, Christine M. FreitagORCiDGND
URN:urn:nbn:de:hebis:30:3-627142
DOI:https://doi.org/10.1371/journal.pone.0261691
ISSN:1932-6203
Parent Title (English):PLOS ONE
Publisher:PLOS
Place of publication:San Francisco, California, US
Document Type:Article
Language:English
Date of Publication (online):2022/01/28
Date of first Publication:2022/01/28
Publishing Institution:Universitätsbibliothek Johann Christian Senckenberg
Release Date:2024/03/04
Tag:Aggression; DNA methylation; Environmental impacts; Epigenetics; Gene expression; Genetic loci; Genetic networks; Methylation
Volume:17
Issue:1, art. e0261691
Article Number:e0261691
Page Number:17
First Page:1
Last Page:17
Note:
Data Availability: All data needed to replicate the findings is available here: https://osf.io/erqwp/ This includes the anonymized phenotypic data of probands, the epigenetics data (reads per proband matrix) and any additional files used. The code used in the analytical pipeline is available here: https://github.com/achiocch/femNATCD_MethSeq. The full outcomes of the analysis are available as git-hub page https://achiocch.github.io/femNATCD_MethSeq/ Due to ethical restrictions in the informed consent given by the study participants, raw genetic or epigenetic data (FASTQ) cannot be made publicly available. The reason is that genetic data cannot be anonymized, and is thus considered special sensitive data. However, the FASTQ dataset is not part of the minimal data set and not needed to replicated the analyses and conclusions made.
Note:
Funding: This project has been funded by the European FP7 Framework, grant agreement no: 602407, FemNAT-CD (coordinator CM Freitag). The funder provided support in the form of salaries for authors [AGC, AB, AM, KA] as well as for the methylation analysis at geneXpro and other consumables.
Institutes:Medizin
Dewey Decimal Classification:1 Philosophie und Psychologie / 15 Psychologie / 150 Psychologie
6 Technik, Medizin, angewandte Wissenschaften / 61 Medizin und Gesundheit / 610 Medizin und Gesundheit
Sammlungen:Universitätspublikationen
Licence (German):License LogoCreative Commons - Namensnennung 4.0