Institutes
Refine
Year of publication
Document Type
- Article (350)
- Doctoral Thesis (250)
- Preprint (41)
- Book (11)
- Contribution to a Periodical (7)
- Review (4)
Has Fulltext
- yes (663)
Is part of the Bibliography
- no (663)
Keywords
- Podospora anserina (9)
- aging (8)
- SARS-CoV-2 (7)
- Synechococcus (6)
- 14CO2 Fixation (5)
- Cyanobacteria (5)
- Ecology (5)
- Haloferax volcanii (5)
- Membrane Proteins (5)
- Phylogeny (5)
Institute
- Biowissenschaften (663)
- Senckenbergische Naturforschende Gesellschaft (34)
- Medizin (21)
- Biochemie, Chemie und Pharmazie (20)
- Präsidium (18)
- Biodiversität und Klima Forschungszentrum (BiK-F) (16)
- Buchmann Institut für Molekulare Lebenswissenschaften (BMLS) (13)
- Institut für Ökologie, Evolution und Diversität (13)
- Zentrum für Biomolekulare Magnetische Resonanz (BMRZ) (13)
- Biochemie und Chemie (8)
Folding of G-protein coupled receptors (GPCRs) according to the two-stage model (Popot, J. L., and Engelman, D. M. (1990) Biochemistry 29, 4031–4037) is postulated to proceed in 2 steps: partitioning of the polypeptide into the membrane followed by diffusion until native contacts are formed. Herein we investigate conformational preferences of fragments of the yeast Ste2p receptor using NMR. Constructs comprising the first, the first two, and the first three transmembrane (TM) segments, as well as a construct comprising TM1–TM2 covalently linked to TM7 were examined. We observed that the isolated TM1 does not form a stable helix nor does it integrate well into the micelle. TM1 is significantly stabilized upon interaction with TM2, forming a helical hairpin reported previously (Neumoin, A., Cohen, L. S., Arshava, B., Tantry, S., Becker, J. M., Zerbe, O., and Naider, F. (2009) Biophys. J. 96, 3187–3196), and in this case the protein integrates into the hydrophobic interior of the micelle. TM123 displays a strong tendency to oligomerize, but hydrogen exchange data reveal that the center of TM3 is solvent exposed. In all GPCRs so-far structurally characterized TM7 forms many contacts with TM1 and TM2. In our study TM127 integrates well into the hydrophobic environment, but TM7 does not stably pack against the remaining helices. Topology mapping in microsomal membranes also indicates that TM1 does not integrate in a membrane-spanning fashion, but that TM12, TM123, and TM127 adopt predominantly native-like topologies. The data from our study would be consistent with the retention of individual helices of incompletely synthesized GPCRs in the vicinity of the translocon until the complete receptor is released into the membrane interior.
Lantibiotics are peptide-derived antibiotics that inhibit the growth of Gram-positive bacteria via interactions with lipid II and lipid II-dependent pore formation in the bacterial membrane. Due to their general mode of action the Gram-positive producer strains need to express immunity proteins (LanI proteins) for protection against their own lantibiotics. Little is known about the immunity mechanism protecting the producer strain against its own lantibiotic on the molecular level. So far, no structures have been reported for any LanI protein. We solved the structure of SpaI, a LanI protein from the subtilin producing strain Bacillus subtilis ATCC 6633. SpaI is a 16.8-kDa lipoprotein that is attached to the outside of the cytoplasmic membrane via a covalent diacylglycerol anchor. SpaI together with the ABC transporter SpaFEG protects the B. subtilis membrane from subtilin insertion. The solution-NMR structure of a 15-kDa biologically active C-terminal fragment reveals a novel fold. We also demonstrate that the first 20 N-terminal amino acids not present in this C-terminal fragment are unstructured in solution and are required for interactions with lipid membranes. Additionally, growth tests reveal that these 20 N-terminal residues are important for the immunity mediated by SpaI but most likely are not part of a possible subtilin binding site. Our findings are the first step on the way of understanding the immunity mechanism of B. subtilis in particular and of other lantibiotic producing strains in general.
The solution structure of the lantibiotic immunity protein NisI and its interactions with nisin
(2015)
Many Gram-positive bacteria produce lantibiotics, genetically encoded and posttranslationally modified peptide antibiotics, which inhibit the growth of other Gram-positive bacteria. To protect themselves against their own lantibiotics these bacteria express a variety of immunity proteins including the LanI lipoproteins. The structural and mechanistic basis for LanI-mediated lantibiotic immunity is not yet understood. Lactococcus lactis produces the lantibiotic nisin, which is widely used as a food preservative. Its LanI protein NisI provides immunity against nisin but not against structurally very similar lantibiotics from other species such as subtilin from Bacillus subtilis. To understand the structural basis for LanI-mediated immunity and their specificity we investigated the structure of NisI. We found that NisI is a two-domain protein. Surprisingly, each of the two NisI domains has the same structure as the LanI protein from B. subtilis, SpaI, despite the lack of significant sequence homology. The two NisI domains and SpaI differ strongly in their surface properties and function. Additionally, SpaI-mediated lantibiotic immunity depends on the presence of a basic unstructured N-terminal region that tethers SpaI to the membrane. Such a region is absent from NisI. Instead, the N-terminal domain of NisI interacts with membranes but not with nisin. In contrast, the C-terminal domain specifically binds nisin and modulates the membrane affinity of the N-terminal domain. Thus, our results reveal an unexpected structural relationship between NisI and SpaI and shed light on the structural basis for LanI mediated lantibiotic immunity.
Previous studies towards reduced oxygen availability have mostly focused on changes in total mRNA expression, neglecting underlying transcriptional and post-transcriptional events. Therefore, we generated a comprehensive overview of hypoxia-induced changes in total mRNA expression, global de novo transcription, and mRNA stability in monocytic THP-1 cells. Since hypoxic episodes often persist for prolonged periods, we further compared the adaptation to acute and chronic hypoxia. While total mRNA changes correlated well with enhanced transcription during short-term hypoxia, mRNA destabilization gained importance under chronic conditions. Reduced mRNA stability not only added to a compensatory attenuation of immune responses, but also, most notably, to the reduction in nuclear-encoded mRNAs associated with various mitochondrial functions. These changes may prevent the futile production of new mitochondria under conditions where mitochondria cannot exert their full metabolic function and are indeed actively removed by mitophagy. The post-transcriptional mode of regulation might further allow for the rapid recovery of mitochondrial capacities upon reoxygenation. Our results provide a comprehensive resource of functional mRNA expression dynamics and underlying transcriptional and post-transcriptional regulatory principles during the adaptation to hypoxia. Furthermore, we uncover that RNA stability regulation controls mitochondrial functions in the context of hypoxia.
Background: The causative agent of Chagas disease, Trypanosoma cruzi, and its nonpathogenic relative, Trypanosoma rangeli, are transmitted by haematophagous triatomines and undergo a crucial ontogenetic phase in the insect’s intestine. In the process, the parasites interfere with the host immune system as well as the microbiome present in the digestive tract potentially establishing an environment advantageous for development. However, the coherent interactions between host, pathogen and microbiota have not yet been elucidated in detail. We applied a metagenome shotgun sequencing approach to study the alterations in the microbiota of Rhodnius prolixus, a major vector of Chagas disease, after exposure to T. cruzi and T. rangeli focusing also on the functional capacities present in the intestinal microbiome of the insect.
Results: The intestinal microbiota of R. prolixus was dominated by the bacterial orders Enterobacterales, Corynebacteriales, Lactobacillales, Clostridiales and Chlamydiales, whereas the latter conceivably originated from the blood used for pathogen exposure. The anterior and posterior midgut samples of the exposed insects showed a reduced overall number of organisms compared to the control group. However, we also found enriched bacterial groups after exposure to T. cruzi as well as T rangeli. While the relative abundance of Enterobacterales and Corynebacteriales decreased considerably, the Lactobacillales, mainly composed of the genus Enterococcus, developed as the most abundant taxonomic group. This applies in particular to vectors challenged with T. rangeli and at early timepoints after exposure to vectors challenged with T. cruzi. Furthermore, we were able to reconstruct four metagenome-assembled genomes from the intestinal samples and elucidate their unique metabolic functionalities within the triatomine microbiome, including the genome of a recently described insect symbiont, Candidatus Symbiopectobacterium, and the secondary metabolites producing bacteria Kocuria spp.
Conclusions: Our results facilitate a deeper understanding of the processes that take place in the intestinal tract of triatomine vectors during colonisation by trypanosomal parasites and highlight the influential aspects of pathogen-microbiota interactions. In particular, the mostly unexplored metabolic capacities of the insect vector’s microbiome are clearer, underlining its role in the transmission of Chagas disease.
Understanding how species relate mechanistically to their environment via traits is a central goal in ecology. Many macroecological rules were found for macroorganisms, however, whether they can explain microorganismal macroecological patterns still requires investigation. Further, whether macroecological rules are also applicable in microclimates is largely unexplored. Here we use fruit body-forming fungi to understand both aspects better. A recent study showed first evidence for the thermal-melanism hypothesis (Bogert’s rule) in fruit body-forming fungi and relied on a continental spatial scale with large grid size. At large spatial extent and grid sizes, other factors like dispersal limitation or local microclimatic variability might influence observed patterns besides the rule of interest. Therefore, we test fungal assemblage fruit body color lightness along a local elevational gradient (mean annual temperature gradient of 7°C) while considering the vegetation cover as a proxy for local variability in microclimate. Using multivariate linear modeling, we found that fungal fruiting assemblages are significantly darker at lower mean annual temperatures supporting the thermal-melanism hypothesis. Further, we found a non-significant trend of assemblage color lightness with vegetation cover. Our results support Bogert’s rule for microorganisms with macroclimate, which was also found for macroorganisms.
Out-of-school laboratories, also called student labs, are an advantageous opportunity to teach biological subjects. Particularly in the case of complex fields such as neurobiology, student labs offer the opportunity to learn about difficult topics in a practical way. Due to numerous advantages, digital student labs are becoming increasingly popular nowadays. In this study, we investigated the effect of an electrophysiological setup for a virtual experiment with and without hands-on elements on participant motivation and technology acceptance. For this purpose, 235 students were questioned during a student laboratory day. The surveyed students showed high motivation and technology acceptance for the virtual experiment. In the comparison, the electrophysiological setup with hands-on elements performs better in the intrinsic components than the setup without hands-on elements: Thus, the hands-on approach is rated as more interesting and the perceived enjoyment scores higher. Nevertheless, both experimental groups show high values, so that the results of the study support the positive influence of digital laboratory as well as a positive influence of hands-on elements.
Highlights
• PUR, PVC and PLA microplastics affect life-history parameters of Daphnia magna.
• Natural kaolin particles are less toxic than microplastics.
• Microplastic toxicity is material-specific, e.g. PVC is most toxic on reproduction.
• In case of PVC, plastic chemicals are the main driver of microplastic toxicity.
• PLA bioplastics are similarly toxic as conventional plastics.
Abstract
Given the ubiquitous presence of microplastics in aquatic environments, an evaluation of their toxicity is essential. Microplastics are a heterogeneous set of materials that differ not only in particle properties, like size and shape, but also in chemical composition, including polymers, additives and side products. Thus far, it remains unknown whether the plastic chemicals or the particle itself are the driving factor for microplastic toxicity. To address this question, we exposed Daphnia magna for 21 days to irregular polyvinyl chloride (PVC), polyurethane (PUR) and polylactic acid (PLA) microplastics as well as to natural kaolin particles in high concentrations (10, 50, 100, 500 mg/L, ≤ 59 μm) and different exposure scenarios, including microplastics and microplastics without extractable chemicals as well as the extracted and migrating chemicals alone. All three microplastic types negatively affected the life-history of D. magna. However, this toxicity depended on the endpoint and the material. While PVC had the largest effect on reproduction, PLA reduced survival most effectively. The latter indicates that bio-based and biodegradable plastics can be as toxic as their conventional counterparts. The natural particle kaolin was less toxic than microplastics when comparing numerical concentrations. Importantly, the contribution of plastic chemicals to the toxicity was also plastic type-specific. While we can attribute effects of PVC to the chemicals used in the material, effects of PUR and PLA plastics were induced by the mere particle. Our study demonstrates that plastic chemicals can drive microplastic toxicity. This highlights the importance of considering the individual chemical composition of plastics when assessing their environmental risks. Our results suggest that less studied polymer types, like PVC and PUR, as well as bioplastics are of particular toxicological relevance and should get a higher priority in ecotoxicological studies.
Highlights
• Three ecological groups were identified based on distributional patterns.
• Old assessments were confirmed with the latest occurrence data.
• For each group, we derived different population trends in times of global change.
• Global change elevates importance of vector-borne diseases.
• Our results serve as base for effective Simuliidae monitoring.
Abstract
The black fly genus Simulium includes medically and ecologically important species, characterized by a wide variation of ecological niches largely determining their distributional patterns. In a rapidly changing environment, species-specific niche characteristics determine whether a species benefits or not. With aquatic egg, larval and pupal stages followed by a terrestrial adult phase, their spatial arrangements depend upon the interplay of aquatic conditions and climatic-landscape parameters in the terrestrial realm. The aim of this study was to enhance the understanding of the distributional patterns among Simulium species and their ecological drivers. In an ecological niche modelling approach, we focused on 12 common black fly species with different ecological requirements. Our modelling was based on available distribution data along with five stream variables describing the climatic, land-cover, and topographic conditions of river catchments. The modelled freshwater habitat suitability was spatially interpolated to derive an estimate of the adult black flies' probability of occurrence. Based on similarities in the spatial patterns of modelled habitat suitability we were able to identify three biogeographical groups, which allows us to confirm old assessments with current occurrence data: (A) montane species, (B) broad range species and (C) lowland species. The five veterinary and human medical relevant species Simulium equinum, S. erythrocephalum, S. lineatum, S. ornatum and S. reptans are mainly classified in the lowland species group. In the course of climatic changes, it is expected that biocoenosis will slightly shift towards upstream regions, so that the lowland group will presumably emerge as the winner. This is mainly explained by wider ecological niches, including a higher temperature tolerance and tolerance to various pollutants. In conclusion, these findings have significant implications for human and animal health. As exposure to relevant Simulium species increases, it becomes imperative to remain vigilant, particularly in investigating the potential transmission of pathogens.
Seit Jahrzehnten finden Kunststoffe aufgrund ihrer vorteilhaften Materialeigenschaften wie z. B. Formbarkeit und im Vergleich zu Glas oder Metall geringe Kosten und leichtes Gewicht, vermehrt Anwendung in allen Bereichen des täglichen Lebens. Einhergehend gelangen Kunststoffe zunehmend in die Umwelt, und reichern sich dort an. Besondere Aufmerksamkeit erfahren Partikel im Größenbereich von 1-1000 µm, sogenanntes Mikroplastik (MP), welches entweder direkt eingetragen wird oder in der Umwelt durch Fragmentierung größerer Plastikteile entsteht. Lange Zeit fokussierte sich die MP Forschung vorrangig auf aquatische Ökosysteme, obwohl Schätzungen davon ausgehen, dass die Kunststoffeinträge in terrestrischen Ökosystemen um ein Vielfaches höher sind. Besonders relevante Eintragspfade sind neben der unsachgemäßen Entsorgung von Abfällen, die landwirtschaftliche Klärschlamm- und Kompostdüngung und der zunehmende Einsatz von Mulchfolien, sowie der im Straßenverkehr generierte Reifenabrieb.
Für eine Abschätzung und Bewertung der MP-Belastung in Böden sind analytische Messungen von MP in Umweltproben essenziell, derzeit jedoch kaum existent, da MP im Boden partikulär und heterogen verteilt vorliegt und deshalb nur schwierig zu detektieren ist. Die für viele Analyseverfahren notwendige Isolation der Kunststoffpartikel, sowie die für repräsentative Messungen erforderliche Aufbereitung großer Probenvolumina stellen besondere analytische Herausforderungen mit großem Kosten- und Zeitaufwand dar. Chromatografische Verfahren finden wenig Anwendung, bieten aber vorteilhafte Voraussetzungen als Screeningverfahren für die Untersuchung von Böden, da sie nicht zwangsweise eine Partikelisolation verlangen, und zudem als Ergebnis einen Massegehalt liefern.
Diese Dissertation zeigt drei Anwendungen Chromatografie basierter Analyseverfahren zur Charakterisierung von MP im Boden. Erstmalig wurde die Thermo-Extraktion-Desorption-Gaschromatografie-Massenspektrometrie (TED-GC/MS) für die Analytik von Reifenabrieb in realen Umweltproben angewandt bei minimaler Probenaufbereitung. Dafür wurde ein Straßenrandboden umfangreich beprobt und analysiert, und es konnte neben der Eignung der analytischen Methode auch eine repräsentative Probenahmestrategie und räumliche Verteilungsmuster von Reifenabrieb im Boden demonstriert werden.
Der zweite Forschungsschwerpunkt lag auf der Methodenentwicklung und validierung eines neuartigen chemischen Extraktionsverfahrens für die Bestimmung von Polyestern in Bodenproben. Das Verfahren basiert auf der hydrolytischen Spaltung von Polyestern in ihre Monomere, deren flüssigchromatografische Abtrennung von Matrixbestandteilen und der Detektion mittels UV-Absorption. Das Verfahren verlangt neben der Extraktion keine weiteren Probenaufbereitungsschritte, ist für unterschiedliche Umweltmatrizes geeignet und ist damit z. B. prädestiniert für den Nachweis von Polyesterfasern auf gedüngten landwirtschaftlichen Flächen.
MP ist nicht nur aufgrund seiner Persistenz problematisch, sondern auch, weil es hydrophobe organische Schadstoffe aus dem Umweltmedium anreichern und transportieren kann. Maßgeblich für das Sorptionsverhalten sind die Materialeigenschaften des zugrunde liegenden Kunststoffes, welche Änderungen durch Alterungsprozessen unterliegen. Der Zusammenhang zwischen Materialalterung und Sorptionsverhalten wurde in früheren Studien kontrovers diskutiert und ist der dritte Teil dieser Arbeit. In einem Sorptionsexperiment konnte mittels Headspace-Gaschromatografie mit Flammenionisations-Detektion die Aufnahme von Aromaten an den Kunststoffen Polypropylen und Polystyrol quantifiziert werden. Die Kunststoffe wurden materialwissenschaftlich charakterisiert, teilweise künstlich gealtert und die daraus resultierende Änderungen der Materialeigenschaften sowie einhergehenden Änderungen des Sorptionsverhaltens erfasst. Dadurch war es möglich den Einfluss einzelner Materialeigenschaften auf das Sorptionsverhalten zu bewerten, Rückschlüsse auf zugrunde liegende Sorptionsmechanismen zu treffen und zu zeigen, dass in vorliegendem Experiment die Polymeralterung bei MP nicht zu einer erhöhten Schadstoffsorption führte.