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The stopping behaviour of baryons in massive heavy ion collisions ( s k 10AGeV) is investigated within di erent microscopic models. At SPS-energies the predictions range from full stopping to virtually total transparency. Experimental data are indicating strong stopping. The initial baryo-chemical potentials and temperatures at collider energies and their impact on the formation probability of strange baryon clusters and strangelets are discussed.
Nuclear clusters as a probe for expansion flow in heavy ion reactions at 10-A/GeV - 15-A/GeV.
(1996)
A phase space coalescence description based on the Wigner-function method for cluster formation in relativistic nucleus-nucleus collisions is presented. The momentum distributions of nuclear clusters d,t and He are predicted for central Au(11.6AGeV)Au and Si(14.6AGeV)Si reactions in the framework of the RQMD transport approach. Transverse expansion leads to a strong shoulderarm shape and di erent inverse slope parameters in the transverse spectra of nuclear clusters deviating markedly from thermal distributions. A clear bounce-o event shape is seen: the averaged transverse flow velocities in the reaction plane are for clusters larger than for protons. The cluster yields particularly at low pt at midrapidities and the in-plane (anti)flow of clusters and pions change if suitably strong baryon potential interactions are included. This allows to study the transient pressure at high density via the event shape analysis of nucleons, nucleon clusters and other hadrons.
We investigate the properties of di erent modifications to the linear -model (including a dilaton field associated with broken scale invariance) at finite baryon density and nonzero temperature T. The explicit breaking of chiral symmetry and the way the vector meson mass is generated are significant for the appearance of a phase of nearly vanishing nucleon mass besides the solution describing normal nuclear matter. The elimination of the abnormal solution prohibits the onset of a chiral phase transition but allows to lower the compressibility to a reasonable range. The repulsive contributions from the vector mesons are responsible for the wide range of stability of the normal phase in the (µ, T)-plane. The abnormal solution becomes not only energet- ically preferable to the normal state at high temperature or density, but also mechanically stable due to the inclusion of dilatons. PACS number:12.39.F
We discuss the properties of two distinct forms of hypothetical strange matter, small lumps of strange quark matter (strangelets) and of hyperon matter (metastable exotic multihypernuclear objects: MEMOs), with special empha- sis on their relevance for present and future heavy ion experiments. The masses of small strangelets up to AB = 40 are calculated using the MIT bag model with shell mode filling for various bag parameters. The strangelets are checked for possible strong and weak hadronic decays, also taking into account multiple hadron decays. It is found that strangelets which are stable against strong decay are most likely highly negative charged, contrary to previous findings. Strangelets can be stable against weak hadronic decay but their masses and charges are still rather high. This has serious impact on the present high sensitivity searches in heavy ion experiments at the AGS and CERN facilities. On the other hand, highly charged MEMOs are predicted on the basis of an extended relativistic mean field model. Those objects could be detected in future experiments searching for short lived, rare composites. It is demonstrated that future experiments can be sensitive to a much wider variety of strangelets.
According to the Walecka mean field theory of nuclear interaction the collective mutual deceleration of the colliding nuclei gives rise to the bremsstrahlung of real and virtual ! mesons. It is shown that decays of these mesons may give a noticeable contribution to the observed yields of the baryon antibaryon pairs, dileptons and pions. Excitation functions and rapidity distributions of particles produced by this mechanism are calculated under some simplifying assumptions about the space time variation of meson fields in nuclear collisions. The calculated multiplicities of coherently produced particles grow fast with the bombarding energy, reaching a saturation above the RHIC bombarding energy. In the case of central Au+Au collisions the bremsstrahlung mechanism becomes comparable with particle production in incoherent hadron hadron collisions above the AGS energies. The rapidity spectra of antibaryons and pions exhibit a characteristic two hump structure which is a consequence of incomplete projectile target stopping at the initial stage of the reaction. The predicted distribution of e+e pairs has a strong peak at invariant masses Me+e < 0.5 GeV.
Measured hadron yields from relativistic nuclear collisions can be equally well understood in two physically distinct models, namely a static thermal hadronic source versus a time-dependent, non-equilibrium hadronization off a quark gluon plasma droplet. Due to the time-dependent particle evaporation off the hadronic surface in the latter approach the hadron ratios change (by factors of / 5) in time. The overall particle yields then reflect time averages over the actual thermodynamic properties of the system at a certain stage of evolution.
We study the time scale for pressure equilibration in heavy ion collisions at AGS energies within the three-fluid hydrodynamical model and a microscopic cascade model (UrQMD). We find that kinetic equilibrium is reached in both models after a time of 5 fm/c (center-of-mass time). Thus, observables which are sensitive to the early stage of the reaction differ considerably from the expectations within the instant thermalization scenario (one-fluid hydrodynamical model).
In this paper, I examine the potential of mobile alerting services empowering investors to react quickly to critical market events. Therefore, an analysis of short-term (intraday) price effects is performed. I find abnormal returns to company announcements which are completed within a timeframe of minutes. To make use of these findings, these price effects are predicted using pre-defined external metrics and different estimation methodologies. Compared to previous research, the results provide support that artificial neural networks and multiple linear regression are good estimation models for forecasting price effects also on an intraday basis. As most of the price effect magnitude and effect delay can be estimated correctly, it is demonstrated how a suitable mobile alerting service combining a low level of user-intrusiveness and timely information supply can be designed.
Basic problems of the semiclassical microscopic modelling of strongly interacting systems are discussed within the framework of Quantum Molecular Dynamics (QMD). This model allows to study the influence of several types of nucleonic interactions on a large variety of observables and phenomena occur- ring in heavy ion collisions at relativistic energies. It is shown that the same predictions can be obtained with several numerically completely di erent and independently written programs as far as the same model parameters are employed and the same basic approximations are made. Many observ- ables are robust against variations of the details of the model assumptions used. Some of the physical results, however, depend also on rather technical parameters like the preparation of the initial configuration in phase space. This crucial problem is connected with the description of the ground state of single nuclei, which di ers among the various approaches. An outlook to an improved molecular dynamics scheme for heavy ion collisions is given.
Abstract: We study transverse expansion and directed flow in Au(11AGeV)Au reactions within a multi-fluid dynamical model. Although we do not employ an equation of state (EoS) with a first order phase transition, we find a slow increase of the transverse velocities of the nucleons with time. A similar behaviour can be observed for the directed nucleon flow. This is due to non-equilibrium e ects which also lead to less and slower conversion of longitudinal into transverse momentum. We also show that the proton rapidity distribution at CERN energies, as calculated within this model, agrees well with the preliminary NA44-data.
To describe ultrarelativistic heavy-ion collisions we construct a three-fluid hydrodynamical model. In contrast to one-fluid hydrodynamics, it accounts for the finite stopping power of nuclear matter, i.e. for nonequilibrium e ects in the early stage of the reaction. Within this model, we study baryon dynamics in the BNL-AGS energy range. For the system Au+Au we find that kinetic equilibrium between projectile and target nucleons is established only after a time teq CM H 5 fm/c C 2RAu/³CM. Observables which are sensitive to the early stage of the collision (like e.g. nucleon flow) therefore di er considerably from those calculated in the one-fluid model.
We examine the properties of both forms of strange matter, small lumps of strange quark matter (strangelets) and of strange hadronic matter (Metastable Exotic Multihypernuclear Objects: MEMOs) and their relevance for present and future heavy ion searches. The strong and weak decays are discussed separately to distinguish between long-lived and short-lived candidates where the former ones are detectable in present heavy ion experiments while the latter ones in future heavy ion experiments, respectively. We find some long-lived strangelet candidates which are highly negatively charged with a mass to charge ratio like a anti deuteron (M/Z 2) but masses of A=10 to 16. We predict also many short-lived candidates, both in quark and in hadronic form, which can be highly charged. Purely hyperonic nuclei like the (2 02 ) are bound and have a negative charge while carrying a positive baryon number. We demonstrate also that multiply charmed exotics (charmlets) might be bound and can be produced at future heavy ion colliders.
My graduate thesis is on the "Structural studies of membrane transport proteins". Transporters are membrane proteins that have multiple membrane-spanning a-helices. They are dynamic and diverse proteins, undergoing a large conformational change and transporting wide range of susbtrates. Based on their energy source they can be classified into primary and secondary transport systems. Primary transport systems are driven by the use of chemical (ATP) or light energy, while secondary transporters utilize ion gradients to transport substrates. I began my PhD dissertation on secondary transporters by two-dimensional crystallization and electron crystallographic analysis and recently my focus also has shifted towards 3D crystallization. The following projects constitute my PhD thesis: 1) 2D crystallization of MjNhaP1 and pH induced structural change: MjNhaP1, a Na+/H+ antiporter that is regulated by pH has been implicated in homeostasis of H+ and Na+ in Methanococcus jannaschii, a hyperthermophilic archaeon that grows optimally at 85°C. MjNhaP1 was cloned and expressed in E. coli. Two-dimensional crystals were obtained from purified protein at pH4. Electron cryo-microscopy yielded an 8Å projection map. The map of MjNhaP1 shows elongated densities in the centre of the dimer and a cluster of density peaks on either side of the dimer core, indicative of a bundle of 4-6 membrane-spanning helices. The effect of pH on the structure of MjNhaP1was studied in situ in 2D crystals revealing a major change in density within the helix bundle relative to the dimer interface. This change occurred at pH6 and above. The two conformations at low and high pH most likely represent the closed and open states of the antiporter, respectively. This is the first instance where a conformational change associated with the regulation of a secondary transporter appears to map structurally. Reconstruction of 3D map and high-resolution structure by x-ray crystallography would be necessary to understand the mechanism of ion transport and regulation by pH. 2) 2D crystallization of Proline transporter: Proline transporter (PutP) from E.coli belongs the sodium-solute symporter family that includes disease related sodium dependent glucose and iodide transporter in humans. Sodium and proline are co-transported with a stoichiometry of 1:1. Purified PutP was reconstituted to yield 2D crystals that were hexagonal in nature. The 2D crystals had tendency to stack indicating their willingness to form 3D crystals. A projection map of PutP from negatively stained crystals showed trimeric arrangement of protein. Other members of the SSF family have been shown to be monomers. My analysis of oligomeric state of PutP in detergent by blue native gel indicates a monomer in detergent solution. It is likely that PutP can function as a monomer but at higher concentration and in lipid bilayer it tends to form trimer. 3) Oligomeric state and crystallization of carnitine transporter from E.coli: E.coli carnitine transporter (CaiT) belongs to the BCCT (Betaine, Carnitine and Choline) superfamily that transports molecules with quaternary amine groups. CaiT is predicted to span the membrane 12 times and acts as a L-carnitine/g-butyrobetaine exchanger. Unlike other members in this transporter family, it does not require an ion gradient and does not respond to osmotic stress. Over-expression of the protein yielded ~2mg of protein/L of culture. The structure and oligomeric state of the protein were analyzed in detergent and lipid bilayers. Blue native gel electrophoresis indicated that CaiT was a trimer in detergent solution. Gel filtration and cross-linking studies further support this. Reconstitution of CaiT into lipid bilayers resulted in 2D crystals. Analysis of negatively stained 2D crystals confirmed that CaiT is a trimer in the membrane. Initial 3D crystallization trials have been successful and currently, the crystals diffract to 6Å and are being improved. 4) Monomeric porin OmpG: OmpG is a bacterial outer membrane b-barrel protein. It is monomeric and its size (33kDa) places it as a prime candidate for a structural solution, using the recently developed method of solid state NMR (work in collaboration with Prof.Hartmut Oskinat, FMP, Berlin). A long-term aim would be to study porins as templates for designing nanopores, for DNA sequencing and identification. I have expressed OmpG in inclusion bodies and refolded at an efficiency of >90% into a functional form using detergent. OmpG was then crystallized by 2D crystallization yielding an 8Å projection map whose structure was similar to native protein. In addition, these crystals were used for structure determination by solid state NMR. An initial spectrum of heavy isotopically labeled OmpG has allowed identification of specific amino acid residues including threonine and proline. Additionally, I obtained 3D crystals in detergent that diffract to 5.5Å and are being improved.
Measured hadron yields from relativistic nuclear collisions can be equally well understood in two physically distinct models, namely a static thermal hadronic source vs. a time-dependent, nonequilibrium hadronization o a quark-gluon plasma droplet. Due to the time-dependent particle evapora- tion o the hadronic surface in the latter approach the hadron ratios change (by factors of <H 5) in time. Final particle yields reflect time averages over the actual thermodynamic properties of the system at a certain stage of the evolution. Calculated hadron, strangelet and (anti-)cluster yields as well as freeze-out times are presented for di erent systems. Due to strangeness distillation the system moves rapidly out of the T, µq plane into the µs-sector. Classif.: 25.75.Dw, 12.38.Mh, 24.85.+p
We discuss the early evolution of ultrarelativistic heavy-ion collisions within a multi- fluid dynamical model. In particular, we show that due to the finite mean-free path of the particles compression shock waves are smeared out considerably as compared to the one-fluid limit. Also, the maximal energy density of the baryons is much lower. We discuss the time scale of kinetic equilibration of the baryons in the central region and its relevance for directed flow. Finally, thermal emission of direct photons from the fluid of produced particles is calculated within the three-fluid model and two other simple expansion models. It is shown that the transverse momentum and rapidity spectra of photons give clue to the cooling law and the early rapidity distribution of the photon source.
Hadron and hadron cluster production in a hydrodynamical model including particle evaporation
(1997)
We discuss the evolution of the mixed phase at RHIC and SPS within boostinvariant hydrodynamics. In addition to the hydrodynamical expansion, we also consider evaporation of particles o the surface of the fluid. The back-reaction of this evaporation process on the dynamics of the fluid shortens the lifetime of the mixed phase. In our model this lifetime of the mixed phase is d 12 fm/c in Au + Au at RHIC and d 6.5 fm/c in Pb + Pb at SPS, even in the limit of vanishing transverse expansion velocity. Strong separation of strangeness occurs, especially in events (or at rapidities) with relatively high initial net baryon and strangeness number, enhancing the multiplicity of MEMOs (multiply strange nuclear clusters). If antiquarks and antibaryons reach saturation in the course of the pure QGP or mixed phase, we find that at RHIC the ratio of antideuterons to deuterons may exceed 0.3 and even 4He/4He > 0.1. In S + Au at SPS we find only N/N H 0.1. Due to fluctuations, at RHIC even negative baryon number at midrapidity is possible in individual events, so that the antibaryon and antibaryon-cluster yields exceed those of the corresponding baryons and clusters.
Protein-protein interactions within the plane of cellular membranes play a key role for many biological processes and in particular for transmembrane signaling. A prominent example is the ligand-induced crosslinking of cytokine receptors, where 3- dimensional cytokine binding followed by 2-dimensional interaction between the receptor subunits have been recognized to be important for regulating signaling specificity. The fundamental importance of such coupled interactions for cell-surface receptor activation has stimulated numerous theoretical studies, which have hardly been confirmed experimentally. An experimental approach to measure interactions and real time kinetics of type I interferon (IFN) induced assembly between interferon receptor subunits ifnar2 and ifnar1 on membrane was developed and determinants of the 2-dimensional interactions, such as dimensionality, size, valency, orientation, membrane fluidity and receptor density were quantitatively addressed The C-terminal decahistidine tagged extracellular domains (EC) of ifnar1 and ifnar2 were site- specifically tethered onto solid-supported fluid lipid membrane, which carried covalently attached chelator bis-nitrilotriacetic acid (bis-NTA) groups. Interactions on the lipid bilayer were detected with a novel solid phase detection technique, which allows simultaneous detection of ligand binding to a membrane anchored receptors and lateral interaction between them in the real time. This was achieved by combining two optical techniques: label-free reflectance interferometry (RIf) and total internal reflection fluorescence spectroscopy (TIRFS). Fluorescence signals, in the order of 10 fluorophores/µm2, were detected without substantial photobleaching. The sensitivity of the label-free interferometric detection was in the range of 10 pg/mm2. The crosstalk between the two signals was eliminated by means of spectral separation. Fluorescence was detected in the visible region and RIf was performed at 800 nm in the near infrared. Flow through conditions allowed to automate experiments and measure binding events as fast as ~ 5 s-1. Using this technique we have dissected the interactions involved in IFN-induced ifnar crosslinking. 2-dimensional association and dissociation rate constants were independently determined by tethering high stoichiometric excess of one of the receptor subunits and comparing dissociation of the labelled ligand away from the membrane in the absence and presence of the non-labelled high affinity competitor. Dissociation traces were fitted with the two-step dissociation model: the first step being the 2-dimensional separation of the ternary complex followed by the 3- dimensional ligand dissociation into solution. Label-free RIf detection allowed absolute parameterization of the 2-dimensional concentrations of the ifnar subunits on the membrane. The TIRFS signal provided high sensitivity of the ligand dissociation and was correlated against the RIf signal before fitting. These features of the detection system allowed us to parameterize the model, and the 2-dimensional association or dissociation rate constants were the only variables during the fitting. Another FRET based binding assay was developed to determine the 2- dimensional dissociation rate constant using a pulse-chase approach. The donor fluorescence from ifnar2-EC was quenched upon the ternary complex formation with the acceptor-labelled IFN and the nonlabelled ifnar1-EC. The equilibrium was perturbed by rapid tethering of substantial excess of the nonlabelled ifnar2-EC onto the membrane. The exchange of the labelled ifnar2-EC with the nonlabelled one was monitored as the decrease in the FRET signal with the 2-dimensional dissociation of ifnar2-EC from the ternary complex being the rate limiting step. Based on the several mutants and variants of the interacting proteins, the effect of different rate constants and receptor orientation on the 2-dimensional crosslinking dynamics was studied. We have identified several critical features of the 2- dimensional interactions on membranes, which cannot be readily concluded from the solution binding assays. The restricted rotation and the increased lifetime of the encounter complex due to high membrane viscosity are the main determinants of the 2-dimensional association. Tethering ifnar1-EC to the membrane via N-terminal decahistidine tag decreased the 2-dimensional association rate constant 4-5 fold. Electrostatic attraction and steering, the important mechanism to enhance association rate constant between the soluble proteins, are not pronounced for interactions on the membrane. Protein orientation due to membrane anchoring dominates over electrostatic effects and together with the increased lifetime of the encounter complex consequence that 2-dimensional association rate constants are quite similar and do not correlate with association rate constants in solution. The 2- dimensional dissociation rate constants were generally 2-5-fold lower compared to the corresponding 3-dimensional dissociation rate constants in solution. Possible explanations for this are that long lifetime of the encounter complex stabilizes the ternary complex or that membrane tethering affects the interaction diagram. In conclusion, combined TIRFS-RIf detection turn to be powerful and versatile technique to characterize protein-protein interactions on membranes.
Multiplayer games have become very popular in the PC market. Almost none of the current games are shipped without some support for multiplayer gaming. At the same time mobile devices are becoming more powerful and popularity of games on these platforms increases. However, there are almost no games that support multiplayer gaming despite the multiple options of these devices to connect with each other and build mobile ad hoc networks. Reasons for this lack of multiplayer support are the high diversity of mobile devices as well as the different protocols and their properties that these devices support. With “SmartBlaster” we developed a multiplayer game for several different platforms that is using several different channels (Bluetooth, IrDa, 802.11 and other networks supporting TCP/IP) to communicate between them.
This paper makes a case for the future development of European corporate law through regulatory competition rather than EC legislation. It is for the first time becoming legally possible for firms within the EU to select the national company law that they wish to govern their activities. A significant number of firms can be expected to exercise this freedom, and national legislatures can be expected to respond by seeking to make their company laws more attractive to firms. Whilst the UK is likely to be the single most successful jurisdiction in attracting firms, the presence of different models of corporate governance within Europe make it quite possible that competition will result in specialisation rather than convergence, and that no Member State will come to dominate as Delaware has done in the US. Procedural safeguards in the legal framework will direct the selection of laws which increase social welfare, as opposed simply to the welfare of those making the choice. Given that European legislators cannot be sure of the ‘optimal’ model for company law, the future of European company law-making would better be left with Member States than take the form of harmonized legislation.
Virtual screening of potential bioactive substances using the support vector machine approach
(2005)
Die vorliegende Dissertation stellt eine kumulative Arbeit dar, die in insgesamt acht wissenschaftlichen Publikationen (fünf publiziert, zwei eingerichtet und eine in Vorbereitung) dargelegt ist. In diesem Forschungsprojekt wurden Anwendungen von maschinellem Lernen für das virtuelle Screening von Moleküldatenbanken durchgeführt. Das Ziel war primär die Einführung und Überprüfung des Support-Vector-Machine (SVM) Ansatzes für das virtuelle Screening nach potentiellen Wirkstoffkandidaten. In der Einleitung der Arbeit ist die Rolle des virtuellen Screenings im Wirkstoffdesign beschrieben. Methoden des virtuellen Screenings können fast in jedem Bereich der gesamten pharmazeutischen Forschung angewendet werden. Maschinelles Lernen kann einen Einsatz finden von der Auswahl der ersten Moleküle, der Optimierung der Leitstrukturen bis hin zur Vorhersage von ADMET (Absorption, Distribution, Metabolism, Toxicity) Eigenschaften. In Abschnitt 4.2 werden möglichen Verfahren dargestellt, die zur Beschreibung von chemischen Strukturen eingesetzt werden können, um diese Strukturen in ein Format zu bringen (Deskriptoren), das man als Eingabe für maschinelle Lernverfahren wie Neuronale Netze oder SVM nutzen kann. Der Fokus ist dabei auf diejenigen Verfahren gerichtet, die in der vorliegenden Arbeit verwendet wurden. Die meisten Methoden berechnen Deskriptoren, die nur auf der zweidimensionalen (2D) Struktur basieren. Standard-Beispiele hierfür sind physikochemische Eigenschaften, Atom- und Bindungsanzahl etc. (Abschnitt 4.2.1). CATS Deskriptoren, ein topologisches Pharmakophorkonzept, sind ebenfalls 2D-basiert (Abschnitt 4.2.2). Ein anderer Typ von Deskriptoren beschreibt Eigenschaften, die aus einem dreidimensionalen (3D) Molekülmodell abgeleitet werden. Der Erfolg dieser Beschreibung hangt sehr stark davon ab, wie repräsentativ die 3D-Konformation ist, die für die Berechnung des Deskriptors angewendet wurde. Eine weitere Beschreibung, die wir in unserer Arbeit eingesetzt haben, waren Fingerprints. In unserem Fall waren die verwendeten Fingerprints ungeeignet zum Trainieren von Neuronale Netzen, da der Fingerprintvektor zu viele Dimensionen (~ 10 hoch 5) hatte. Im Gegensatz dazu hat das Training von SVM mit Fingerprints funktioniert. SVM hat den Vorteil im Vergleich zu anderen Methoden, dass sie in sehr hochdimensionalen Räumen gut klassifizieren kann. Dieser Zusammenhang zwischen SVM und Fingerprints war eine Neuheit, und wurde von uns erstmalig in die Chemieinformatik eingeführt. In Abschnitt 4.3 fokussiere ich mich auf die SVM-Methode. Für fast alle Klassifikationsaufgaben in dieser Arbeit wurde der SVM-Ansatz verwendet. Ein Schwerpunkt der Dissertation lag auf der SVM-Methode. Wegen Platzbeschränkungen wurde in den beigefügten Veröffentlichungen auf eine detaillierte Beschreibung der SVM verzichtet. Aus diesem Grund wird in Abschnitt 4.3 eine vollständige Einführung in SVM gegeben. Darin enthalten ist eine vollständige Diskussion der SVM Theorie: optimale Hyperfläche, Soft-Margin-Hyperfläche, quadratische Programmierung als Technik, um diese optimale Hyperfläche zu finden. Abschnitt 4.3 enthält auch eine Diskussion von Kernel-Funktionen, welche die genaue Form der optimalen Hyperfläche bestimmen. In Abschnitt 4.4 ist eine Einleitung in verschiede Methoden gegeben, die wir für die Auswahl von Deskriptoren genutzt haben. In diesem Abschnitt wird der Unterschied zwischen einer „Filter“- und der „Wrapper“-basierten Auswahl von Deskriptoren herausgearbeitet. In Veröffentlichung 3 (Abschnitt 7.3) haben wir die Vorteile und Nachteile von Filter- und Wrapper-basierten Methoden im virtuellen Screening vergleichend dargestellt. Abschnitt 7 besteht aus den Publikationen, die unsere Forschungsergebnisse enthalten. Unsere erste Publikation (Veröffentlichung 1) war ein Übersichtsartikel (Abschnitt 7.1). In diesem Artikel haben wir einen Gesamtüberblick der Anwendungen von SVM in der Bio- und Chemieinformatik gegeben. Wir diskutieren Anwendungen von SVM für die Gen-Chip-Analyse, die DNASequenzanalyse und die Vorhersage von Proteinstrukturen und Proteininteraktionen. Wir haben auch Beispiele beschrieben, wo SVM für die Vorhersage der Lokalisation von Proteinen in der Zelle genutzt wurden. Es wird dabei deutlich, dass SVM im Bereich des virtuellen Screenings noch nicht verbreitet war. Um den Einsatz von SVM als Hauptmethode unserer Forschung zu begründen, haben wir in unserer nächsten Publikation (Veröffentlichung 2) (Abschnitt 7.2) einen detaillierten Vergleich zwischen SVM und verschiedenen neuronalen Netzen, die sich als eine Standardmethode im virtuellen Screening etabliert haben, durchgeführt. Verglichen wurde die Trennung von wirstoffartigen und nicht-wirkstoffartigen Molekülen („Druglikeness“-Vorhersage). Die SVM konnte 82% aller Moleküle richtig klassifizieren. Die Klassifizierung war zudem robuster als mit dreilagigen feedforward-ANN bei der Verwendung verschiedener Anzahlen an Hidden-Neuronen. In diesem Projekt haben wir verschiedene Deskriptoren zur Beschreibung der Moleküle berechnet: Ghose-Crippen Fragmentdeskriptoren [86], physikochemische Eigenschaften [9] und topologische Pharmacophore (CATS) [10]. Die Entwicklung von weiteren Verfahren, die auf dem SVM-Konzept aufbauen, haben wir in den Publikationen in den Abschnitten 7.3 und 7.8 beschrieben. Veröffentlichung 3 stellt die Entwicklung einer neuen SVM-basierten Methode zur Auswahl von relevanten Deskriptoren für eine bestimmte Aktivität dar. Eingesetzt wurden die gleichen Deskriptoren wie in dem oben beschriebenen Projekt. Als charakteristische Molekülgruppen haben wir verschiedene Untermengen der COBRA Datenbank ausgewählt: 195 Thrombin Inhibitoren, 226 Kinase Inhibitoren und 227 Faktor Xa Inhibitoren. Es ist uns gelungen, die Anzahl der Deskriptoren von ursprünglich 407 auf ungefähr 50 zu verringern ohne signifikant an Klassifizierungsgenauigkeit zu verlieren. Unsere Methode haben wir mit einer Standardmethode für diese Anwendung verglichen, der Kolmogorov-Smirnov Statistik. Die SVM-basierte Methode erwies sich hierbei in jedem betrachteten Fall als besser als die Vergleichsmethoden hinsichtlich der Vorhersagegenauigkeit bei der gleichen Anzahl an Deskriptoren. Eine ausführliche Beschreibung ist in Abschnitt 4.4 gegeben. Dort sind auch verschiedene „Wrapper“ für die Deskriptoren-Auswahl beschrieben. Veröffentlichung 8 beschreibt die Anwendung von aktivem Lernen mit SVM. Die Idee des aktiven Lernens liegt in der Auswahl von Molekülen für das Lernverfahren aus dem Bereich an der Grenze der verschiedenen zu unterscheidenden Molekülklassen. Auf diese Weise kann die lokale Klassifikation verbessert werden. Die folgenden Gruppen von Moleküle wurden genutzt: ACE (Angiotensin converting enzyme), COX2 (Cyclooxygenase 2), CRF (Corticotropin releasing factor) Antagonisten, DPP (Dipeptidylpeptidase) IV, HIV (Human immunodeficiency virus) protease, Nuclear Receptors, NK (Neurokinin receptors), PPAR (peroxisome proliferator-activated receptor), Thrombin, GPCR und Matrix Metalloproteinasen. Aktives Lernen konnte die Leistungsfähigkeit des virtuellen Screenings verbessern, wie sich in dieser retrospektiven Studie zeigte. Es bleibt abzuwarten, ob sich das Verfahren durchsetzen wird, denn trotzt des Gewinns an Vorhersagegenauigkeit ist es aufgrund des mehrfachen SVMTrainings aufwändig. Die Publikationen aus den Abschnitten 7.5, 7.6 und 7.7 (Veröffentlichungen 5-7) zeigen praktische Anwendungen unserer SVM-Methoden im Wirkstoffdesign in Kombination mit anderen Verfahren, wie der Ähnlichkeitssuche und neuronalen Netzen zur Eigenschaftsvorhersage. In zwei Fällen haben wir mit dem Verfahren neuartige Liganden für COX-2 (cyclooxygenase 2) und dopamine D3/D2 Rezeptoren gefunden. Wir konnten somit klar zeigen, dass SVM-Methoden für das virtuelle Screening von Substanzdatensammlungen sinnvoll eingesetzt werden können. Es wurde im Rahmen der Arbeit auch ein schnelles Verfahren zur Erzeugung großer kombinatorischer Molekülbibliotheken entwickelt, welches auf der SMILES Notation aufbaut. Im frühen Stadium des Wirstoffdesigns ist es wichtig, eine möglichst „diverse“ Gruppe von Molekülen zu testen. Es gibt verschiedene etablierte Methoden, die eine solche Untermenge auswählen können. Wir haben eine neue Methode entwickelt, die genauer als die bekannte MaxMin-Methode sein sollte. Als erster Schritt wurde die „Probability Density Estimation“ (PDE) für die verfügbaren Moleküle berechnet. [78] Dafür haben wir jedes Molekül mit Deskriptoren beschrieben und die PDE im N-dimensionalen Deskriptorraum berechnet. Die Moleküle wurde mit dem Metropolis Algorithmus ausgewählt. [87] Die Idee liegt darin, wenige Moleküle aus den Bereichen mit hoher Dichte auszuwählen und mehr Moleküle aus den Bereichen mit niedriger Dichte. Die erhaltenen Ergebnisse wiesen jedoch auf zwei Nachteile hin. Erstens wurden Moleküle mit unrealistischen Deskriptorwerten ausgewählt und zweitens war unser Algorithmus zu langsam. Dieser Aspekt der Arbeit wurde daher nicht weiter verfolgt. In Veröffentlichung 6 (Abschnitt 7.6) haben wir in Zusammenarbeit mit der Molecular-Modeling Gruppe von Aventis-Pharma Deutschland (Frankfurt) einen SVM-basierten ADME Filter zur Früherkennung von CYP 2C9 Liganden entwickelt. Dieser nichtlineare SVM-Filter erreichte eine signifikant höhere Vorhersagegenauigkeit (q2 = 0.48) als ein auf den gleichen Daten entwickelten PLS-Modell (q2 = 0.34). Es wurden hierbei Dreipunkt-Pharmakophordeskriptoren eingesetzt, die auf einem dreidimensionalen Molekülmodell aufbauen. Eines der wichtigen Probleme im computerbasierten Wirkstoffdesign ist die Auswahl einer geeigneten Konformation für ein Molekül. Wir haben versucht, SVM auf dieses Problem anzuwenden. Der Trainingdatensatz wurde dazu mit jeweils mehreren Konformationen pro Molekül angereichert und ein SVM Modell gerechnet. Es wurden anschließend die Konformationen mit den am schlechtesten vorhergesagten IC50 Wert aussortiert. Die verbliebenen gemäß dem SVM-Modell bevorzugten Konformationen waren jedoch unrealistisch. Dieses Ergebnis zeigt Grenzen des SVM-Ansatzes auf. Wir glauben jedoch, dass weitere Forschung auf diesem Gebiet zu besseren Ergebnissen führen kann.
After a brief introduction on QCD and effective models in the first chapter, I analyze the dependence of the QCD transition temperature on the quark (or pion) mass in the second chapter. I found that a linear sigma model, which links the transition to chiral symmetry restoration, predicts a much stronger dependence of T_c on m_pi than seen in present lattice data for m_pi >~ 0.4 GeV. On the other hand, an effective Lagrangian for the Polyakov loop requires only small explicit symmetry breaking to describe T_c(m_pi) in the above mass range. In the third and fourth chapter, I study the linear sigma model with O(N) symmetry at nonzero temperature in the framework of the Cornwall-Jackiw-Tomboulis formalism. Extending the set of two-particle irreducible diagrams by adding sunset diagrams to the usual Hartree-Fock (or Hartree) contributions, I derive a new approximation scheme which extends the standard Hartree-Fock (or Hartree) approximation by the inclusion of nonzero decay widths.
In the present study possible sources and pathways of the gasoline additive methyl tertiary-butyl ether (MTBE) in the aquatic environment in Germany were investigated. The objective of the present study was to clarify some of the questions raised by a previous study on the MTBE situation in Germany. In the USA and Europe 12 million t and 3 million t of MTBE, respectively, are used as gasoline additive. The detection of MTBE in the aquatic environment and the potential risk for drinking water resources led to a phase-out of MTBE as gasoline additive in single states of the USA. Meanwhile there is also an ongoing discussion about the substitution of MTBE in Europe and Germany. The annual usage of MTBE in Germany is about 600,000 t. However, compared to the USA, significant less data exists on the occurrence of MTBE in the aquatic environment in Europe. Because of its physico-chemical properties, MTBE readily vaporizes from gasoline, is water soluble, adsorbs only weakly to the underground matrix and is largely persistent to biological degradation. The toxicity of MTBE remains to be completely investigated, but MTBE in drinking water has low taste- and odor thresholds of 20-40 microgram/L. The present study was conducted by collecting water samples and analyzing them for their MTBE concentrations through a combination of headspace-solid phase microextraction (HS-SPME) and gas chromatography-mass spectrometry (GC-MS). The detection limit was 10 ng/L. The method was successfully tested in the framework of an interlaboratory study and showed recoveries of reference values of 89% (74 ng/L) and 104% (256 ng/L). The relative standard deviations were 12% and 6%. The investigation of 83 water samples from 50 community water systems (CWSs) in Germany revealed a detection frequency of 40% and a concentration range of 17-712 ng/L. The detection of MTBE in the drinking water samples could be explained by a groundwater pollution and the pathway river - riverbank filtration - waterworks. Rivers are important drinking water sources. MTBE is emitted into rivers through a variety of sources. In the present study, potential point sources were investigated, i.e. MTBE production sites/refineries/tank farms and groundwater pollutions. For this purpose, the spatial distribution of MTBE in three German rivers with the named potential emission sources located close to the rivers was investigated by analyzing 49 corresponding river water samples. The influence of the potential emission sources groundwater pollution and refinery/tank farm was successfully demonstrated in certain parts of the River Saale and the River Rhine. Increasing MTBE concentrations from 24 ng/L to 379 ng/L and from 73 ng/L to 5 microgram/L, respectively, could be observed in the parts investigated in these two rivers. The identification of such emission sources is important for future modeling. Further sources of MTBE emission into surface water are industrial (non-petrochemical) and municipal sewage plant effluents. In the present study long-term monitoring of water from the River Main (n=67 samples), precipitation (n=89) and industrial (n=34) and municipal sewage plant effluents (n=66) was conducted. The comparison of the data sets revealed that maximum MTBE concentrations in the River Main of up to 1 microgram/L were most possibly due to single industrial effluents with MTBE concentrations of up to 28 microgram/L (measured in this study). The average MTBE content of 66 ng/L in the River Main most probably originated from municipal sewage plant effluents and further industrial effluents. Background concentrations of <30 ng/L could be related to the direct atmospheric input via precipitation. A certain aspect of the atmospheric MTBE input is represented by the input of MTBE into river water or groundwater through snow. In the present study 43 snow samples from 13 different locations were analyzed for their MTBE content. MTBE could be detected in 65% of the urban and rural samples. The concentrations ranged from 11-613 ng/L and were higher than the concentrations in rainwater samples formerly analyzed. Furthermore, a temperature dependency and wash-out effects could be observed. The atmospheric input of MTBE was in part also visible in the analyzed groundwater samples (n=170). The detection frequencies in non-urban and urban wells were 24% and 63%, respectively. The median concentrations were 177 ng/L and 57 ng/L. In wells located in the vicinity of sites with gasoline contaminated groundwater, MTBE concentrations of up to 42 mg/L could be observed. The MTBE emission sources and the different pathways of MTBE in the aquatic environment demonstrated in the present study and other works raise the question whether the use of MTBE in a bulk product like gasoline should be continued in the future. Currently, possible substitutes like ethyl tertiary-butyl ether (ETBE) or ethanol are being discussed.
A study of secondary Drell-Yan production in nuclear collisions is presented for SPS energies. In addition to the lepton pairs produced in the initial collisions of the projectile and target nucleons, we consider the potentially high dilepton yield from hard valence antiquarks in produced mesons and antibaryons. We calculate the secondary Drell-Yan contributions taking the collision spectrum of hadrons from the microscopic model URQMD. The con- tributions from meson-baryon interactions, small in hadron-nucleus interac- tions, are found to be substantial in nucleus-nucleus collisions at low dilepton masses. Preresonance collisions of partons may further increase the yields.
A generalized Lagrangian for the description of hadronic matter based on the linear SU(3)L × SU(3)R -model is proposed. Besides the baryon octet, the spin-0 and spin-1 nonets, a gluon condensate associated with broken scale invariance is incorporated. The observed values for the vacuum masses of the baryons and mesons are reproduced. In mean-field approximation, vector and scalar interactions yield a saturating nuclear equation of state. We discuss the di culties and possibilities to construct a chiral invariant baryon-meson interaction that leads to a realistic equation of state. It is found that a coupling of the strange condensate to nucleons is needed to describe the hyperon potentials correctly. The effective baryon masses and the appearance of an abnormal phase of nearly massless nucleons at high densities are examined. A nonlinear realization of chiral symmetry is considered, to retain a Yukawa-type baryon-meson interaction and to establish a connection to the Walecka-model.
Abstract. A generalized Lagrangian for the description of hadronic matter based on the linear SU(3)L × SU(3)R -model is proposed. Besides the baryon octet, the spin-0 and spin-1 nonets, a gluon condensate associated with broken scale invariance is incorporated. The observed values for the vacuum masses of the baryons and mesons are reproduced. In mean-field approximation, vector and scalar interactions yield a saturating nuclear equation of state. Finite nuclei can be reasonably described, too. The condensates and the e ective baryon masses at finite baryon density and temperature are discussed.
Artificial drainage of agricultural land, for example with ditches or drainage tubes, is used to avoid water logging and to manage high groundwater tables. Among other impacts it influences the nutrient balances by increasing leaching losses and by decreasing denitrification. To simulate terrestrial transport of nitrogen on the global scale, a digital global map of artificially drained agricultural areas was developed. The map depicts the percentage of each 5’ by 5’ grid cell that is equipped for artificial drainage. Information on artificial drainage in countries or sub-national units was mainly derived from international inventories. Distribution to grid cells was based, for most countries, on the "Global Croplands Dataset" of Ramankutty et al. (1998) and the "Digital Global Map of Irrigation Areas" of Siebert et al. (2005). For some European countries the CORINE land cover dataset was used instead of the both datasets mentioned above. Maps with outlines of artificially drained areas were available for 6 countries. The global drainage area on the map is 167 Mio hectares. For only 11 out of the 116 countries with information on artificial drainage areas, sub-national information could be taken into account. Due to this coarse spatial resolution of the data sources, we recommended to use the map of artificially drained areas only for continental to global scale assessments. This documentation describes the dataset, the data sources and the map generation, and it discusses the data uncertainty.
The deconfinement transition region between hadronic matter and quark-gluon plasma is studied for finite volumes. Assuming simple model equations of state and a first order phase transition, we find that fluctuations in finite volumes hinder a sharp separation between the two phases around the critical temperature, leading to a rounding of the phase transition. For reaction volumes expected in heavy ion experiments, the softening of the equation of state is reduced considerably. This is especially true when the requirement of exact color-singletness is included in the QGP equation of state.
A self-consistent relativistic integral-di erential equation of the Boltzmann- Uehling-Uhlenbeck-type for the N*(1440) resonance is developed based on an effective Lagrangian of baryons interacting through mesons. The closed time-path Green s function technique and semi-classical, quasi-particle and Born approxima- tions are employed in the derivation. The non-equilibrium RBUU-type equation for the N*(1440) is consistent with that of nucleon s and delta s which we derived before. Thus, we obtain a set of coupled equations for the N,Delta and N*(1440) distribution functions. All the N (1440)-relevant in-medium two-body scattering cross sections within the N,Delta and N*(1440) system are derived from the same effective Lagrangian in addition to the mean field and presented analytically, which can be directly used in the study of relativistic heavy-ion collisions. The theoreticalprediction of the free pp - pp* (1440) cross section is in good agreement with the experimental data. We calculate the in-medium N+N - N+N* , N* +N - N+N and N*+N - N* +N cross sections in cold nuclear matter up to twice the nuclear matter density. The influence of different choices of the N* N* coupling strengths, which can not be obtained through fitting certain experimental data, are discussed. The results show that the density dependence of predicted in-medium cross sections are sensitive to the N* N* coupling strengths used. An evident density dependence will appear when a large scalar coupling strength of g^(sigma) N*N* is assumed. PACS number(s): 24.10.Cn; 25.70.-z; 21.65.+f
We find that on average consumers chose the contract that ex post minimized their net costs. A substantial fraction of consumers (about 40%) still chose the ex post sub-optimal contract, with some incurring hundreds of dollars of avoidable interest costs. Nonetheless, the probability of choosing the sub-optimal contract declines with the dollar magnitude of the potential error, and consumers with larger errors were more likely to subsequently switch to the optimal contract. Thus most of the errors appear not to have been very costly, with the exception that a small minority of consumers persists in holding substantially sub-optimal contracts without switching. Klassifikation: G11, G21, E21, E51
Using a set of regional inflation rates we examine the dynamics of inflation dispersion within the U.S.A., Japan and across U.S. and Canadian regions. We find that inflation rate dispersion is significant throughout the sample period in all three samples. Based on methods applied in the empirical growth literature, we provide evidence in favor of significant mean reversion (ß-convergence) in inflation rates in all considered samples. The evidence on ó-convergence is mixed, however. Observed declines in dispersion are usually associated with decreasing overall inflation levels which indicates a positive relationship between mean inflation and overall inflation rate dispersion. Our findings for the within-distribution dynamics of regional inflation rates show that dynamics are largest for Japanese prefectures, followed by U.S. metropolitan areas. For the combined U.S.-Canadian sample, we find a pattern of within-distribution dynamics that is comparable to that found for regions within the European Monetary Union (EMU). In line with findings in the so-called 'border literature' these results suggest that frictions across European markets are at least as large as they are, e.g., across North American markets. Klassifikation: E31, E52, E58
Using a unique data set of regional inflation rates we are examining the extent and dynamics of inflation dispersion in major EMU countries before and after the introduction of the euro. For both periods, we find strong evidence in favor of mean reversion (ß-convergence) in inflation rates. However, half-lives to convergence are considerable and seem to have increased after 1999. The results indicate that the convergence process is nonlinear in the sense that its speed becomes smaller the further convergence has proceeded. An examination of the dynamics of overall inflation dispersion (ó-convergence) shows that there has been a decline in dispersion in the first half of the 1990s. For the second half of the 1990s, no further decline can be observed. At the end of the sample period, dispersion has even increased. The existence of large persistence in European inflation rates is confirmed when distribution dynamics methodology is applied. At the end of the paper we present evidence for the sustainability of the ECB's inflation target of an EMU-wide average inflation rate of less than but close to 2%. Klassifikation: E31, E52, E58
The paper documents lack of awareness of financial assets in the 1995 and 1998 Bank of Italy Surveys of Household Income and Wealth. It then explores the determinants of awareness, and finds that the probability that survey respondents are aware of stocks, mutual funds and investment accounts is positively correlated with education, household resources, long-term bank relations and proxies for social interaction. Lack of financial awareness has important implications for understanding the stockholding puzzle and for estimating stock market participation costs. Klassifikation: E2, D8, G1
The theory of intertemporal consumption choice makes sharp predictions about the evolution of the entire distribution of household consumption, not just about its conditional mean. In the paper, we study the empirical transition matrix of consumption using a panel drawn from the Bank of Italy Survey of Household Income and Wealth. We estimate the parameters that minimize the distance between the empirical and the theoretical transition matrix of the consumption distribution. The transition matrix generated by our estimates matches remarkably well the empirical matrix, both in the aggregate and in samples stratified by education. Our estimates strongly reject the consumption insurance model and suggest that households smooth income shocks to a lesser extent than implied by the permanent income hypothesis. Klassifikation: D52, D91, I30
Trusting the stock market
(2005)
We provide a new explanation to the limited stock market participation puzzle. In deciding whether to buy stocks, investors factor in the risk of being cheated. The perception of this risk is a function not only of the objective characteristics of the stock, but also of the subjective characteristics of the investor. Less trusting individuals are less likely to buy stock and, conditional on buying stock, they will buy less. The calibration of the model shows that this problem is sufficiently severe to account for the lack of participation of some of the richest investors in the United States as well as for differences in the rate of participation across countries. We also find evidence consistent with these propositions in Dutch and Italian micro data, as well as in cross country data. Klassifikation: D1, D8
Credit card debt puzzles
(2005)
Most US credit card holders revolve high-interest debt, often combined with substantial (i) asset accumulation by retirement, and (ii) low-rate liquid assets. Hyperbolic discounting can resolve only the former puzzle (Laibson et al., 2003). Bertaut and Haliassos (2002) proposed an 'accountant-shopper' framework for the latter. The current paper builds, solves, and simulates a fully-specified accountant-shopper model, to show that this framework can actually generate both types of co-existence, as well as target credit card utilization rates consistent with Gross and Souleles (2002). The benchmark model is compared to setups without self-control problems, with alternative mechanisms, and with impatient but fully rational shoppers. Klassifikation: E210, G110
Some have argued that recent increases in credit risk transfer are desirable because they improve the diversification of risk. Others have suggested that they may be undesirable if they increase the risk of financial crises. Using a model with banking and insurance sectors, we show that credit risk transfer can be beneficial when banks face uniform demand for liquidity. However, when they face idiosyncratic liquidity risk and hedge this risk in an interbank market, credit risk transfer can be detrimental to welfare. It can lead to contagion between the two sectors and increase the risk of crises. Klassifikation: G21, G22
How do markets spread risk when events are unknown or unknowable and where not anticipated in an insurance contract? While the policyholder can "hold up" the insurer for extra contractual payments, the continuing gains from trade on a single contract are often too small to yield useful coverage. By acting as a repository of the reputations of the parties, we show the brokers provide a coordinating mechanism to leverage the collective hold up power of policyholders. This extends both the degree of implicit and explicit coverage. The role is reflected in the terms of broker engagement, specifically in the ownership by the broker of the renewal rights. Finally, we argue that brokers can be motivated to play this role when they receive commissions that are contingent on insurer profits. This last feature questions a recent, well publicized, attack on broker compensation by New York attorney general, Elliot Spitzer. Klassifikation: G22, G24, L14
Biophysical investigation of the ligand-induced assembling of the human type I interferon receptor
(2005)
Type I interferons (IFNs) elicit antiviral, antiproliferative and immunmodulatory responses through binding to a shared receptor consisting of the transmembrane proteins ifnar1 and ifnar2. Differential signaling by different interferons – in particular IFNalpha´s and IFNbeta – suggest different modes of receptor engagement. In this work either single ligand-receptor interactions or the formation of the extracellular part of a signaling complex were investigated referring to thermodynamics, kinetics, stoichiometry and structural organization. Initially an expression and purification strategy for the extracellular domain of ifnar1 (ifnar1-EC) using Sf9 insect cells yielding in mg amounts of glycosylated protein was established. Using reflectometric interference spectroscopy (RIfS) the interactions between IFNalpha2/beta and ifnar1-EC and ifnar2-EC was studied in order to understand the individual energetic contributions within the ternary complex. For IFNalpha2 a Kd of 5 µM for the interaction with ifnar1-EC was determined. Substantially tighter binding of IFNbeta with both ifnar2-EC and ifnar1-EC compared to IFNalpha2 was observed. For neither IFNalpha2 nor IFNbeta stabilization of the complex with ifnar1-EC in presence of soluble ifnar2-EC was detectable. In addition, no direct interaction between ifnar2 and ifnar1 was could be shown. Thus, stem-stem interactions between the extracellular domains of ifnar1 and ifnar2 do not seem to play a role for ternary complex formation. Furthermore, ligand-induced cross-talk between ifnar1-EC and ifnar2-EC being tethered onto solid-supported, fluid lipid bilayers was investigated by RIfS and total internal reflection fluorescence spectroscopy. A very stable binding of IFNalpha2 at high receptor surface concentrations was observed with an apparent kd approximately 200-times lower than for ifnar2-EC alone. This apparent kd was strongly dependent on the surface concentration of the receptor components, suggesting kinetic rather than static stabilization, which was corroborated by competition experiments. These results indicate that signaling is activated by transient cross-talk between ifnar1 and ifnar2, which is by several orders of magnitude more efficiently engaged by IFNbeta than by IFNalpha2. With respect to differential recognition of different IFNs ifnar1-EC was dissected into sub-fragments containing different of the four Ig-like domains. The appropriate folding and glycosylation of these proteins, also purified in mg amounts were confirmed by SDS-PAGE, size exclusion chromatography and CD-spectroscopy. Surprisingly, only one construct containing all three N-terminal Ig-like domains was active in terms of ligand binding, indicating that these domains were required. Competitive binding of IFNalpha2 and IFNbeta to both this fragment and ifnar1-EC was demonstrated. Cellular binding assays with different fragments, however, highlight the key role of the membrane-proximal Ig-like domain for the formation of an in situ IFN-receptor complex and the ensuing signal activation. Even substitution with Ig-like domains from homologous cytokine receptors did not restore high-affinity ligand binding. Receptor assembling analysis on supported lipid bilayer revealed that appropriate orientation of the receptor is required, which is controlled by the membrane-proximal Ig-domain. All results indicate that differential signalling is encoded by the efficiency of signalling complex formation, which is controlled by the binding affinity of IFNs to the extracellular domains of ifnar1 and 2.
Preliminary experimental data for particle number ratios in the collisions of Au+Au at the BNL AGS (11A GeV/c) and Pb+Pb at the CERN SPS (160A GeV/c) are analyzed in a thermodynamically consistent hadron gas model with excluded volume. Large values of temperature, T = 140 185 MeV, and baryonic chemical potential, µb = 590 270 MeV, close to the boundary of the quark-gluon plasma phase are found from fitting the data. This seems to indicate that the energy density at the chemical freezeout is tremendous which would be indeed the case for the point-like hadrons. However, a self-consistent treatment of the van der Waals excluded volume reveals much smaller energy densities which are very far below a lowest limit estimate of the quark-gluon plasma energy density. PACS number(s): 25.75.-q, 24.10.Pa
We study the bremsstrahlung of virtual omega mesons due to the collective deceleration of nuclei at the initial stage of an ultrarelativistic heavy ion collision. It is shown that electromagnetic decays of these mesons may give an important contribution to the observed yields of dileptons. Mass spectra of e+e and µ+µ pairs produced in central Au+Au collisions are calculated under some simplifying assumptions on the space time variation of the baryonic current in a nuclear collision process. Comparison with the CERES data for 160 AGev Pb+Au collisions shows that the proposed mechanism gives a noticeable fraction of the observed e+e pairs in the intermediate region of invariant masses. Sensi tivity of the dilepton yield to the in medium modification of masses and widths of vector mesons is demonstrated.
Collective bremsstrahlung of vector meson fields in relativistic nuclear collisions is studied within the time dependent Walecka model. Mutual deceleration of the colliding nuclei is described by introducing the e ective stopping time and average rapidity loss of baryons. It is shown that electromagnetic decays of virtual ω mesons produced by bremsstrahlung mechanism can provide a substantial contribution to the soft dilepton yield at the SPS bombarding energies. In particular, it may be responsible for the dilepton enhancement observed in 160 AGev central Pb+Au collisions. Suggestions for future experiments to estimate the relative contribution of the collective mechanism are given.
Dielectron mass spectra are examined for various nuclear reactions recently measured by the DLS collaboration. A detailed description is given of all dilepton channels included in the transport model UrQMD 1.0, i.e. Dalitz decays of π, η, ω, ή mesons and of the (1232) resonance, direct decays of vector mesons and pn bremsstrahlung. The microscopic calculations reproduce data for light systems fairly well, but tend to underestimate the data in pp at high energies and in pd at low energies. These conventional sources, however, cannot explain the recently reported enhancement for nucleus-nucleus collisions in the mass region 0.15GeV ≤ Me+e- ≤ 0.6GeV. Chiral scaling and ω meson broadening in the medium are investigated as a source of this mass excess. They also cannot explain the recent DLS data.
The transverse momentum distribution of prompt photons coming from the very early phase of ultrarelativistic heavy ion collisions for the RHIC and LHC energies is calculated by means of perturbative QCD. We calculate the single photon cross section (A + B -> gamma + X) by taking into account the partonic sub processes q + q -> gamma + g and q + g -> gamma + q as well as the Bremsstrahlung corrections to those processes. We choose a lower momentum cut-off k0 = 2 GeV separating the soft physics from perturbative QCD. We compare the results for those primary collisions with the photons produced in reactions of the thermalized secondary particles, which are calculated within scaling hydrodynamics. The QCD processes are taken in leading order. Nuclear shadowing corrections, which alter the involved nuclear structure functions are explicitly taken into account and compared to unshadowed results. Employing the GRV parton distribution parametrizations we find that at RHIC prompt QCD-photons dominate over the thermal radiation down to transverse momenta kT ≈ 2 GeV. At LHC, however, thermal radiation from the QGP dominates for photon transverse momenta kT ≤ 5 GeV, if nuclear shadowing effects on prompt photon production are taken into account.
Direct photon production in central Pb+Pb collisions at CERN-SPS energy is calculated within the relativistic microscopic transport model UrQMD, and within distinctly di erent versions of relativistic hydrodynamics. We find that in UrQMD the local momentum distributions of the secondaries are strongly elongated along the beam axis initially. Therefore, the preequilibrium contribution dominates the photon spectrum at transverse momenta above H 1.5 GeV. The hydrodynamics prediction of a strong correlation between the temperature and radial expansion velocities on the one hand and the slope of the transverse momentum distribution of direct photons on the other hand thus is not recovered in UrQMD. The rapidity distribution of direct photons in UrQMD reveals that the initial conditions for the longitudinal expansion of the photon source (the meson fluid ) resemble rather boostinvariance than Landau-like flow.
A self-consistent relativistic Boltzmann-Uehling-Uhlenbeck equation for the N (1440) resonance is developed based on an effective Lagrangian of baryons interacting through mesons. The equation is consistent with that of nucleon s and delta s which we derived before. Thus, we obtain a set of coupled equations for the N, Delta and N (1440) distribution functions. All the N (1440)-relevant in-medium two-body scattering cross sections within the N, Delta and N (1440) system are derived from the same effective Lagrangian in addition to the mean field and presented analytically. Medium effects on the cross sections are discussed.
Here I analyse 23 populations of D. galeata, a large-lake cladoceran, distributed mainly across the Palaearctic. I detected high levels of clonal diversity and population differentiation using variation at six microsatellite loci across Europe. Most populations were characterised by deviations from H-W equilibrium and significant heterozygote deficiencies. Observed heterozygote deficiencies might be a consequence of simultaneous hatching of individuals produced during different times of the year or of the coexistence of ecologically and genetically differentiated subpopulations. A significant isolation by distance was only found over large geographic distances (> 700 km). This pattern is mainly due to the high genetic differentiation among neighbouring populations. My results suggest that historic populations of Daphnia were once interconnected by gene flow but current populations are now largely isolated. Thus local ecological conditions which determine the level of biparental sexual reproduction and local adaptation are the main factors mediating population structure of D. galeata. The population genetic structure and diversity in D. galeata was investigated at a European scale using six microsatellite loci and 12S rDNA sequence data to infer and compare historical and contemporary patterns of gene flow. D. galeata has the potential for long-distance dispersal via ephippial resting eggs by wind and other dispersing vectors (waterfowl), but shows in general strong population differentiation even among neighbouring populations. A total of 427 individuals were analysed for microsatellite and 85 individuals for mitochondrial (mtDNA) sequence data from 12 populations across Europe. I detected genetic differentiation among populations across Europe and locations within sampling regions for both genetic marker systems (average values: mtDNA FST = 0.574; microsatellite FST = 0.389), resulting in a lack of isolation by distance. Furthermore, several microsatellite alleles and one haplotype were shared across populations. Partitioning of molecular variance was inconsistant for both marker systems. Microsatellite variation was higher within than among populations, whereas mtDNA data yielded an inverse pattern. Relative high levels of nuclear DNA diversity were found across Europe. The amount of mitochondrial diversity was low in Spain, Hungary and Denmark. Gene flow analysis at a European scale did not reveal typical pattern of population recolonization in the light of postglacial colonization hypotheses. Populations, which recently experienced an expansion or population-bottleneck were observed both in middle and northern Europe. Since these populations revealed high genetic diversity in both marker systems, I suggest these areas to represent postglacial zones of secondary contact among divergent lineages of D. galeata. In order to reveal the relationship between population genetic structure of D. galeata and the relative contribution of environmental factors, I used a statistical framework based on canonical correspondence analysis. Although I detected no single ecological gradient mediating the genetic differentiation in either lake regions, it is noteworthy that the same ecological factors were significantly correlated with intra- and interspecific genetic variation of D. galeata. For example, I found a relationship between genetic variation of D. galeata and differentiation with higher and lower trophic levels (phytoplankton, submerged macrophytes and fish) and a relationship between clonal variation and species diversity within Cladocera. Variance partitioning had only a minor contribution of each environmental category (abiotic, biomass/density and diversity) to genetic diversity of D. galeata, while the largest proportion of variation was explained by shared components. My work illustrates the important role of ecological differentiation and adaptation in structuring genetic variation, and it highlights the need for approaches incorporating a landscape context for population divergence.
We derive the self-consistent relativistic quantum transport equation for the pion distribution function based on an effective Lagrangian of the QHD-II model. The closed time-path Green's function technique, the semi-classical, quasi-particle and Born approximation are employed in the derivation. Both the mean field and collision term are derived from the same Lagrangian and presented analytically. The dynamical equation for the pions is consistent with that for the nucleons and deltas which we developed before. Thus, we obtain a self-consistent relativistic transport model which describes the hadronic matter with N, Delta and pi degrees of freedom simultaneously. Within this approach, we investigate the medium effects on the pion dispersion relation as well as the pion absorption and pion production channels in cold nuclear matter. In contrast to the results of the non-relativistic model, the pion dispersion relation becomes harder at low momenta and softer at high momenta as compared to the free one. The theoretically predicted free pi N to Delta cross section is in agreement with the experimental data. Medium effects on the pi N to Delta cross section and momentum-dependent Delta-decay width are shown to be substantial.
Relativistic quantum transport theory of hadronic matter: the coupled nucleon, delta and pion system
(1998)
We derive the relativistic quantum transport equation for the pion distribution function based on an effective Lagrangian of the QHD-II model. The closed time-path Green s function technique, the semi-classical, quasiparticle and Born approximation are employed in the derivation. Both the mean field and collision term are derived from the same Lagrangian and presented analytically. The dynamical equation for the pions is consistent with that for the nucleons and deltas which we developed before. Thus, we obtain a relativistic transport model which describes the hadronic matter with N,Delta and pi degrees of freedom simultaneously. Within this approach, we investigate the medium e ects on the pion dispersion relation as well as the pion absorption and pion production channels in cold nuclear matter. In contrast to the results of the non-relativistic model, the pion dispersion relation becomes harder at low momenta and softer at high momenta as compared to the free one, which is mainly caused by the relativistic kinetics. The theoretically predicted free pi*N -> Delta cross section is in agreement with the experimental data. Medium e ects on the pi*N -> Delta cross section and momentum-dependent Delta-decay width are shown to be substantial. PACS number(s): 24.10.Cn; 13.75.Cs; 21.65.+f; 25.70.-z
The hard contributions to the heavy quarkonium-nucleon cross sections are calculated based on the QCD factorization theorem and the nonrelativistic quarkonium model. We evaluate the nonperturbative part of these cross sections which dominates at psNN 20 GeV at the Cern Super Proton Synchrotron (SPS) and becomes a correction at psNN 6 TeV at the CERN Large Hadron Collider (LHC). J/psi production at the CERN SPS is well described by hard QCD, when the larger absorption cross sections of the states predicted by QCD are taken into account. We predict an A-dependent polarization of the states. The expansion of small wave packets is discussed.
We perform an event-by-event analysis of the transverse momentum distribution of final state particles in central Pb(160AGeV)+Pb collisions within a microscopic non-equilibrium transport model (UrQMD). Strong influence of rescattering is found. The extracted momentum distributions show less fluctuations in A+A collisions than in p+p reactions. This is in contrast to simplified p+p extrapolations and random walk models.
Die vorliegende Arbeit beschäftigt sich mit der Charakterisierung des ALTRO Chips (ALICE TPC Readout), der ein integraler und wichtiger Bestandteil der Auslesekette des TPC (Time Projection Chamber) Detektors von ALICE (A Large Ion Collider Experiment) ist. ALICE ist ein Experiment am noch im Bau befindlichen LHC (Large Hadron Collider) am CERN mit der zentralen Ausrichtung, Schwerionenkollisionen zu untersuchen. Diese sind von besonderem Interesse, da durch sie ein experimenteller Zugriff zu dem QGP (Quark Gluon Plasma) existiert, dem einzigen vom Standardmodell vorhergesagten Phasenübergang, der unter Laborbedingungen erreichbar ist. Im Jahr 2004 wurden Messungen an einem Teststrahl am CERN PS (Proton Synchrotron) durchgeführt. Der Prototyp wurde voll mit FECs bestückt, was 5400 Kanälen entspricht und einer anderen Gasmixtur (Ne/N2/CO2 90%/5%/5%) befüllt. Für das optimale Leistungsverhalten der ALICE TPC muß der Digitalprozessor im ALTRO, bestehend aus vier Berechnungseinheiten, mit den passenden Werten konfiguriert werden. Der Datenfluss beginnt mit dem BCS1 (Baseline Correction and Subtraction 1) Modul, das systematische Störungen und die Grundlinie entfernt. Da der ALTRO kontinuierlich das anliegende Signal abtastet, entfernt es automatisch langsame Grundlinienveränderungen, die Beispielsweise durch Temperaturänderungen auftreten können. Gefolgt von dem TCF (Tail Cancellation Filter), der den Schweif des langsam fallenden, vom PASA generierten Signals entfernt. Um die nichtsystematischen Störungen der Grundlinie zu entfernen, folgt die BCS2 (Baseline Correction and Subtraction 2), die auf einer gleitenden Mittelwertsberechnung mit Ausschluß von Detektorsignalen über einen doppelten Schwellenwert basiert. Die finale Einheit für die Signalverarbeitung ist die ZSU (Zero Suppression Unit), die Meßpunkte unterhalb eines definierten Schwellwertes entfernt. Hier wird der weg beschrieben die TCF und BCS1 Parameter aus vorhandenen Detektordaten zu extrahieren. Während der Analyse der Daten von kosmischen Teilchen fiel bei Signalen mit hoher Amplitude (>700 ADC) eine zusätzliche Struktur in dem Schweif auf. Der Monitor wurde deswegen mit einem gleitenden Mittelwertfilter erweitert, worauf sich diese Struktur auch in kleineren Signalen (> 200 ADC) zeigte. Dieses Signal wird von Ionen erzeugt, die zur Kathode oder zu den Pads driften, bisher ist jedoch weder die Streuung der Elektronenlawine an der Anode, noch die Variationsbreite in den erzeugten Elektronlawinen verstanden oder gemessen worden. Eine erfolgreiche Messung, sowie Charakterisierung wird in dieser Arbeit beschrieben. Im Jahr 2005 im Sommer beginnt der Einbau der Gaskammern der TPC in ALICE, die Elektronik folgt am Ende dieses Jahres. Parallel hierzu wurde der Prototyp der TPC wieder in Betrieb genommen und im Frühling wird ein kompletter Sektor mit der Detektorelektronik ausgestattet. An diesen zwei Aufbauten wird die ALTRO Charakterisierung fortgeführt, verfeinert und komplettiert.
We reexamine the scenario of homogeneous nucleation of the quark-gluon plasma produced in ultra-relativistic heavy ion collisions. A generalization of the standard nucleation theory to rapidly expanding system is proposed. The nucleation rate is derived via the new scaling parameter Z. It is shown that the size distribution of hadronic clusters plays an important role in the dynamics of the phase transition. The longitudinally expanding system is supercooled to about 3 6%, then it is reheated, and the hadronization is completed within 6 10 fm/c, i.e. 5 10 times faster than it was estimated earlier, in a strongly nonequilibrium way. PACS: 12.38.Mh; 12.39.Ba; 25.75.-q; 64.60.Qb
Nuclei can be described satisfactorily in a nonlinear chiral SU(3)-framework, even with standard potentials of the linearmodel. The condensate value of the strange scalar meson is found to be important for the properties of nuclei even without adding hyperons. By neglecting terms which couple the strange to the nonstrange condensate one can reduce the model to a Walecka model structure embedded in SU(3). We discuss inherent problems with chiral SU(3) models regarding hyperon optical potentials.
A new chiral SU(3) Lagrangian is proposed to describe the properties of kaons and antikaons in the nuclear medium, the ground state of dense matter and the kaon-nuclear interactions consistently. The saturation properties of nuclear matter are reproduced as well as the results of the Dirac-Brückner theory. After taking into account the coupling between the omega meson and the kaon, we obtain similar results for the e ective kaon and antikaon energies as calculated in the one-boson-exchange model while in our model the parameters of the kaon-nuclear interactions are constrained by the SU(3) chiral symmetry. PACS number(s): 14.40.Aq, 12.39.Fe, 21.30.Fe
We study the effects of strict conservation laws and the problem of negative contributions to final momentum distribution during the freeze out through 3-dimensional hypersurfaces with space-like normal. We study some suggested solutions for this problem, and demonstrate it on one example. PACS: 24.10.Nz, 25.75.-q
The extend to which geometrical effects contribute to the production and suppression of the J/psi and qq minijet pairs in general is investigated for high energy heavy ion collisions at SPS, RHIC and LHC energies. For the energy range under investigation, the geometrical e ects referred to are shadowing and anti-shadowing, respectively. Due to those effects, the parton distributions in nuclei deviate from the naive extrapolation from the free nucleon result; fA 6= AfN. The strength of the shadowing/anti-shadowing e ect increases with the mass number. Therefore it is interesting to see the di erence between cross sections for e.g. S+U vs. Pb+Pb at SPS. The recent NA50 results for the survival probability of produced J/psi s has attracted great attention and are often interpreted as a signature of a quark gluon plasma. This publication will present a fresh look on hard QCD e ects for the charmonium production level. It is shown that the apparent suppression of J/psi s must also be linked to the production process. Due to the uncertainty in the shadowing of gluons the suppression of charmonium states might not give reli- able information on a created plasma phase at the collider energies soon available. The consequences of shadowing e ects for the xF distribution of J/psi s at s = 20 GeV, s = 200 GeV and s = 6 TeV are calculated for some relevant combinations of nuclei, as well as the pT distribution of minijets at midrapidity for Nf = 4 in the final state.
In fluid dynamical models the freeze out of particles across a three dimensional space-time hypersurface is discussed. The calculation of final momentum distribution of emitted particles is described for freeze out surfaces, with both space-like and time-like normals, taking into account conservation laws across the freeze out discontinuity.
We estimate the energy density epsilon pile-up at mid-rapidity in central Pb+Pb collisions from 2 200 GeV/nucleon. epsilon is decomposed into hadronic and partonic contributions. A detailed analysis of the collision dynamics in the framework of a microscopic transport model shows the importance of partonic degrees of freedom and rescattering of leading (di)quarks in the early phase of the reaction for Elab 30 GeV/nucleon. In Pb+Pb collisions at 160 GeV/nucleon the energy density reaches up to 4 GeV/fm3, 95% of which are contained in partonic degrees of freedom.
A new chiral SU(3) Lagrangian is proposed to describe the properties of kaons and anti-kaons in the nuclear medium. The saturation properties of nuclear matter are reproduced as well as the results of the Dirac-Brückner theory. After introducing the coupling between the omega meson and the kaon, our results for e ective kaon and anti-kaon energy are quite similar as calculated in the one-boson-exchange model.
The modification of the width of rho mesons due to in-medium decays and collisions is evaluated. The decay width is calculated from the imaginary part of the one-loop selfenergy at finite temperature. The collision width is related to the cross sections of the rho + pion and the rho + nucleon reactions. A calculation based on an e ective Lagrangian shows the importance of including the direct pho pi - > pho pi scattering which is dominated by the a1 exchange. A large broadening of the spectral function is found, accompanied by a strength suppression at the pole. http://www.arxiv.org/abs/nucl-th/9812059
Dissociation rates of J / psi's with comoving mesons : thermal versus nonequilibrium scenario.
(1998)
We study J/psi dissociation processes in hadronic environments. The validity of a thermal meson gas ansatz is tested by confronting it with an alternative, nonequilibrium scenario. Heavy ion collisions are simulated in the frame- work of the microscopic transport model UrQMD, taking into account the production of charmonium states through hard parton-parton interactions and subsequent rescattering with hadrons. The thermal gas and microscopic transport scenarios are shown to be very dissimilar. Estimates of J/psi survival probabilities based on thermal models of comover interactions in heavy ion collisions are therefore not reliable.
We calculate the shadowing of sea quarks and gluons and show that the shadowing of gluons is not simply given by the sea quark shadowing, especially at small x. The calculations are done in the lab frame approach by using the generalized vector meson dominance model. Here the virtual photon turns into a hadronic fluctuation long before the nucleus. The subsequent coherent interaction with more than one nucleon in the nucleus leads to the depletion sigma(gamma* A) < A sigma( gamma*N) known as shadowing. A comparison of the shadowing of quarks to E665 data for 40Ca and 207Pb shows good agreement.
Signatures of quark gluon plasma formation in high-energy heavy ion collisions : a critical review
(1998)
Ultra-relativistic heavy ion collisions offer the unique opportunity to probe highly excited dense nuclear matter under controlled laboratory conditions. The compelling driving force for such studies is the expectation that an entirely new form of matter may be created from such reactions. That form of matter, called the Quark Gluon Plasma (QGP), is the QCD analogue of the plasma phase of ordinary atomic matter. However, unlike such ordinary plasmas, the deconfined quanta of a QGP are not directly observable because of the fundamental confining property of the physical QCD vacuum. What is observable are hadronic and leptonic residues of the transient QGP state. There is a large variety of such individual probes.
We study J/psi suppression in AB collisions assuming that the charmonium states evolve from small, color transparent configurations. Their interaction with nucleons and nonequilibrated, secondary hadrons is simulated us- ing the microscopic model UrQMD. The Drell-Yan lepton pair yield and the J/psi /Drell-Yan ratio are calculated as a function of the neutral transverse en- ergy in Pb+Pb collisions at 160 GeV and found to be in reasonable agreement with existing data.
Abstract: Local thermal and chemical equilibration is studied for central AqA collisions at 10.7 160 AGeV in the Ultrarelativis- . tic Quantum Molecular Dynamics model UrQMD . The UrQMD model exhibits strong deviations from local equilibrium at the high density hadron string phase formed during the early stage of the collision. Equilibration of the hadron resonance matter is established in the central cell of volume Vs125 fm3 at later stages, tG10 fmrc, of the resulting quasi-isentropic expansion. The thermodynamical functions in the cell and their time evolution are presented. Deviations of the UrQMD quasi-equilibrium state from the statistical mechanics equilibrium are found. They increase with energy per baryon and lead to a strong enhancement of the pion number density as compared to statistical mechanics estimates at SPS energies. PACS: 25.75.-q; 24.10.Lx; 24.10.Pa; 64.30.qt
Homogeneous nucleation of quark gluon plasma, finite size effects and longlived metastable objects
(1998)
The general formalism of homogeneous nucleation theory is applied to study the hadronization pattern of the ultra-relativistic quark-gluon plasma (QGP) undergoing a first order phase transition. A coalescence model is proposed to describe the evolution dynamics of hadronic clusters produced in the nucle- ation process. The size distribution of the nucleated clusters is important for the description of the plasma conversion. The model is most sensitive to the initial conditions of the QGP thermalization, time evolution of the energy den- sity, and the interfacial energy of the plasma hadronic matter interface. The rapidly expanding QGP is first supercooled by about T = T Tc = 4 6%. Then it reheats again up to the critical temperature Tc. Finally it breaks up into hadronic clusters and small droplets of plasma. This fast dynamics occurs within the first 5 10 fm/c. The finite size e ects and fluctuations near the critical temperature are studied. It is shown that a drop of longitudinally expanding QGP of the transverse radius below 4.5 fm can display a long-lived metastability. However, both in the rapid and in the delayed hadronization scenario, the bulk pion yield is emitted by sources as large as 3 4.5 fm. This may be detected experimentally both by a HBT interferometry signal and by the analysis of the rapidity distributions of particles in narrow pT -intervals at small |pT | on an event-by-event basis. PACS numbers: 12.38.Mh, 24.10.Pa, 25.75.-q, 64.60.Qb
Chemically non equilibrated quark antiquark matter is studied within the Nambu Jona-Lasinio model. The equations of state of non strange (q = u, d) and strange (q = s) qq systems are calculated in the mean field approximation. The existence of metastable bound states with zero pressure is predicted at finite densities and temperatures T 50 MeV. It is shown that the minimum energy per particle occurs for symmetric systems, with equal densities of quarks and antiquarks. At T = 0 these metastable states have quark number densities of about 0.5 fm 3 for q = u, d and of 1 fm 3 for q = s. A first order chiral phase transition is found at finite densities and temperatures. The critical temperature for this phase transition is approximately 75 MeV (90 MeV) for the non strange (strange) baryon free quark antiquark matter. For realistic choices of parameters, the model does not predict a phase transition in chemically equilibrated systems. Possible decay channels of the metastable qq droplets and their signatures in relativistic heavy ion collisions are discussed.
Noneequilibrium models (three-fluid hydrodynamics and UrQMD) use to discuss the uniqueness of often proposed experimental signatures for quark matter formation in relativistic heavy ion collisions. It is demonstrated that these two models - although they do treat the most interesting early phase of the collisions quite differently(thermalizing QGP vs. coherent color fields with virtual particles) - both yields a reasonable agreement with a large variety of the available heavy ion data.
We study J/psi suppression in AB collisions assuming that the charmonium states evolve from small, color transparent configurations. Their interaction with nucleons and nonequilibrated, secondary hadrons is simulated using the microscopic model UrQMD. The Drell-Yan lepton pair yield and the J/psi Drell-Yan ratio are calculated as a function of the neutral transverse energy in Pb+Pb collisions at 160 GeV and found to be in reasonable agreement with existing data.
We derive the relativistic quantum transport equation for the pion distribution function based on an effective Lagrangian of the QHD-II model. The closed-time-path Green s function technique and the semiclassical, quasiparticle, and Born approximations are employed in the derivation. Both the mean field and collision term are derived from the same Lagrangian and presented analytically. The dynamical equation for the pions is consistent with that for the nucleons and Delta's which we developed before. Thus, we obtain a relativistic transport model which describes the hadronic matter with N,Delta, and pi degrees of freedom simultaneously. Within this approach, we investigate the medium effects on the pion dispersion relation as well as the pion absorption and pion production channels in cold nuclear matter. In contrast to the results of the nonrelativistic model, the pion dispersion relation becomes harder at low momenta and softer at high momenta as compared to the free one, which is mainly caused by the relativistic kinetics. The theoretically predicted free piN->Delta cross section is in agreement with the experimental data. Medium effects on the piN->Delta cross section and momentum-dependent Delta-decay width are shown to be substantial. PACS-numbers: 24.10.Jv, 13.75.Cs, 21.65.1f, 25.75.2q
We calculate the shadowing of sea quarks and gluons and show that the shadowing of gluons is not simply given by the sea quark shadowing, especially at small x. The calculations are done in the lab frame approach by using the generalized vector meson dominance model. Here the virtual photon turns into a hadronic fluctuation long before the nucleus. The subsequent coherent interaction with more than one nucleon in the nucleus leads to the depletion sigma(gamma*A )< A*sigma(gamma * N) known as shadowing. A comparison of the shadowing of quarks to E665 data for 40Ca and 207Pb shows good agreement.
Irreversibility, steady state, and nonequilibrium physics in relativistic heavy ion collisions
(1999)
Heavy ion collisions at ultrarelativistic energies offer the opportunity to study the irreversibility of multiparticle processes. Together with the many-body decays of resonances, the multiparticle processes cause the system to evolve according to Prigogine s steady states rather than towards statistical equilibrium. These results are general and can be easily checked by any microscopic string-, transport-, or cascade model for heavy ion collisions. The absence of pure equilibrium states sheds light on the di culties of thermal models in describing the yields and spectra of hadrons, especially mesons, in heavy ion collisions at bombarding energies above 10 GeV/nucleon. PACS numbers: 25.75.-q, 05.70.Ln, 24.10.Lx
We discuss a model for the space-time evolution of ultrarelativistic heavy-ion collisions which employs relativistic hydrodynamics within one region of the forward light-cone, and microscopic transport theory (i.e. UrQMD) in the complement. Our initial condition consists of a quark-gluon plasma which expands hydrodynamically and hadronizes. After hadronization the solution eventually changes from expansion in local equilibrium to free streaming, as determined selfconsistently by the interaction rates between the hadrons and the local expansion rate. We show that in such a scenario the inverse slopes of the mT -spectra of multiple strange baryons ( Xi,Omega) are practically una ected by the purely hadronic stage of the reaction, while the flow of p's and Lambda's increases. Moreover, we find that the rather soft transverse expansion at RHIC energies (due to a first-order phase transition) is not washed out by strong rescattering in the hadronic stage. The earlier kinetic freeze-out as compared to SPS-energies results in similar inverse slopes (of the mT -spectra of the hadrons in the final state) at RHIC and SPS energies.
Hot hypernuclear matter is investigated in an explicit SU(3) quark model based on a mean field description of nonoverlapping baryon bags bound by the self-consistent exchange of scalar sigma, zeta and vector omega,phi mesons. The sigma, omega mean fields are assumed to couple to the u, d-quarks while the zeta ,phi mean fields are coupled to the s-quark. The coupling constants of the mean fields with the quarks are assumed to satisfy SU(6) symmetry. The calculations take into account the medium dependence of the bag parameter on the scalar fields sigma, zeta. We consider only the octet baryons N,Lambda,Sigma, Xi in hypernuclear matter. An ideal gas of the strange mesons K and K is introduced to keep zero net strangeness density. Our results for symmetric hypernuclear matter show that a phase transition takes place at a critical temperature around 180 MeV in which the scalar mean fields sigma, zeta take nonzero values at zero baryon density. Furthermore, the bag contants of the baryons decrease significantly at and above this critical temperature indicating the onset of quark deconfinement. The present results imply that the onset of quark deconfinement in SU(3) hypernuclear matter is much stronger than in SU(2) nuclear matter. PACS:21.65.+f, 24.85.+p, 12.39Ba
We introduce a transport approach which combines partonic and hadronic degrees of freedom on an equal footing and discuss the resulting reaction dynamics. The initial parton dynamics is modeled in the framework of the parton cascade model, hadronization is performed via a cluster hadronization model and configuration space coalescence, and the hadronic phase is described by a microscopic hadronic transport approach. The resulting reaction dynamics indicates a strong influence of hadronic rescattering on the space-time pattern of hadronic freeze-out and on the shape of transverse mass spectra. Freeze-out times and transverse radii increase by factors of 2 3 depending on the hadron species.
We analyze the hadronic freeze-out in ultra-relativistic heavy ion collisions at RHIC in a transport approach which combines hydrodynamics for the early, dense, deconfined stage of the reaction with a microscopic non-equilibrium model for the later hadronic stage at which the hydrodynamic equilibrium assumptions are not valid. With this ansatz we are able to self-consistently calculate the freeze-out of the system and determine space-time hypersurfaces for individual hadron species. The space-time domains of the freeze-out for several hadron species are found to be actually four-dimensional, and di er drastically for the individual hadrons species. Freeze-out radii distributions are similar in width for most hadron species, even though the is found to be emitted rather close to the phase boundary and shows the smallest freeze- out radii and times among all baryon species. The total lifetime of the system does not change by more than 10% when going from SPS to RHIC energies.
Charmonium production and absorption in heavy ion collisions is studied with the Ultrarelativisitic Quantum Molecular Dynamics model. We compare the scenario of universal and time independent color-octet dissociation cross sections with one of distinct color-singlet J/psi, psi 2 and CHIc states, evolving from small, color transparent configurations to their asymptotic sizes. The measured J/psi production cross sections in pA and AB collisions at SPS energies are consistent with both purely hadronic scenarios. The predicted rapidity dependence of J/psi suppression can be used to discriminate between the two experimentally. The importance of interactions with secondary hadrons and the applicability of thermal reaction kinetics to J/psi absorption are in- vestigated. We discuss the e ect of nuclear stopping and the role of leading hadrons. The dependence of the 2/J/psi ratio on the model assumptions and the possible influence of refeeding processes is also studied.
Event-by-event multiplicity fluctuations in nucleus-nucleus collisions are studied within the HSD and UrQMD transport models. The scaled variances of negative, positive, and all charged hadrons in Pb+Pb at 158 AGeV are analyzed in comparison to the data from the NA49 Collaboration. We find a dominant role of the fluctuations in the nucleon participant number for the final hadron multiplicity fluctuations. This fact can be used to check di erent scenarios of nucleus-nucleus collisions by measuring the final multiplicity fluctuations as a function of collision centrality. The analysis reveals surprising e ects in the recent NA49 data which indicate a rather strong mixing of the projectile and target hadron production sources even in peripheral collisions. PACS numbers: 25.75.-q,25.75.Gz,24.60.-k
Mitochondial NADH:ubiquinone oxidoreductase (complex I) the largest multiprotein enzyme of the respiratory chain, catalyses the transfer of two electrons from NADH to ubiquinone, coupled to the translocation of four protons across the membrane. In addition to the 14 strictly conserved central subunits it contains a variable number of accessory subunits. At present, the best characterized enzyme is complex I from bovine heart with a molecular mass of about 980 kDa and 32 accessory proteins. In this study, the subunit composition of mitochondrial complex I from the aerobic yeast Y. lipolytica has been analysed by a combination of proteomic and genomic approaches. The sequences of 37 complex I subunits were identified. The sum of their individual molecular masses (about 930 kDa) was consistent with the native molecular weight of approximately 900 kDa for Y. lipolytica complex I obtained by BN-PAGE. A genomic analysis with Y. lipolytica and other eukaryotic databases to search for homologues of complex I subunits revealed 31 conserved proteins among the examined species. A novel protein named “X” was found in purified Y. lipolytica complex I by MALDI-MS. This protein exhibits homology to the thiosulfate sulfurtransferase enzyme referred to as rhodanese. The finding of a rhodanese-like protein in isolated complex I of Y. lipolytica allows to assume a special regulatory mechanism of complex I activity through control of the status of its iron-sulfur clusters. The second part of this study was aimed at investigating the possible role of one of these extra subunits, 39 kDa (NUEM) subunit which is related to the SDRs-enzyme family. The members of this family function in different redox and isomerization reactions and contain a conserved NAD(P)H-binding site. It was proposed that the 39 kDa subunit may be involved in a biosynthetic pathway, but the role of this subunit in complex I is unknown. In contrast to the situation in N. crassa, deletion of the 39 kDa encoding gene in Y. lipolytica led to the absence of fully assembled complex I. This result might indicate a different pathway of complex I assembly in both organisms. Several site-directed mutations were generated in the nucleotide binding motif. These had either no effect on enzyme activity and NADPH binding, or prevented complex I assembly. Mutations of arginine-65 that is located at the end of the second b-strand and responsible for selective interaction with the 2’-phosphate group of NADPH retained complex I activity in mitochondrial membranes but the affinity for the cofactor was markedly decreased. Purification of complex I from mutants resulted in decrease or loss of ubiquinone reductase activity. It is very likely that replacement of R65 not only led to a decrease in affinity for NADPH but also caused instability of the enzyme due to steric changes in the 39 kDa subunit. These data indicate that NADPH bound to the 39 kDa subunit (NUEM) is not essential for complex I activity, but probably involved in complex I assembly in Y. lipolytica.
This dissertation investigates developments in the performance of J. S. Bach’s music in the second half of the 20th century, as reflected in recordings of the Mass in B Minor, BWV 232. It places particular emphasis on issues relating to concepts of expression through performance. Between the 1950s and the 1980s, most Bach performers shared a partial consensus as to what constitutes expression in performance (e.g., intense sound; wide dynamic range; rubato). Arguments against the application of such techniques to Bach’s works were often linked with the view that his music is more “objective” than later repertoires; or, alternatively, that expressive elements in Bach’s music are self-sufficient, and should be not be intensified in performance. Historically-informed performance (HIP), from the late 1960s onwards, has been characterised by greater attention to the inflection of local details (i.e., individual figures and motifs). In terms of expressive intensity, this led to contradictory results. On the one hand, several HIP performances were characterised by a narrow overall dynamic range, light textures, fast tempi and few contrasts; these performances were often considered lightweight. On the other hand, HIP also promoted renewed interest in the practical application of Baroque theories of musical rhetoric, inspiring performances which projected varied intensity within movements. More recently, traditional means of expression have enjoyed renewed prominence. Ostensibly “romantic” features such as broad legati, long-range crescendi and diminuendi, and organic shaping of movements as wholes have been increasingly adopted by HIP musicians. In order to substantiate the narrative outlined above, the significance of the evidence preserved in sound recordings had to be checked against other sources of information. This dissertation is divided into two main parts. The first part focuses on specific “schools” of prominent Bach performers. Complete recordings of the Mass are examined in relation to the biographical and intellectual backgrounds of the main representatives of these schools, their verbally-expressed views on Bach’s music and on their own role as performers, and their style as documented in recordings of other works. The second part examines the performance history of specific movements within the Mass, comparing the interpretations preserved in sound recordings with relevant verbal analyses and commentaries. The dissertation as a whole therefore combines the resources of reception and performance studies. Beyond its specific historical conclusions concerning Bach performance in the post-war era, it also provides specific insights into Bach’s music, its meaning and its role in contemporary culture.
We calculate the initial non-equilibrium conditions from perturbative QCD (pQCD) within Glauber multiple scattering theory for s = 200 AGeV and s = 5.5 ATeV. At the soon available collider energies one will particularly test the small x region of the parton distributions entering the cross sections. Therefore shadowing effects, previously more or less unimportant, will lead to new e ects on variables such as particle multiplicities dN/dy, transverse energy production d T /dy, and the initial temperature Ti. In this paper we will have a closer look on the effects of shadowing by employing di erent parametrizations for the shadowing effect for valence quarks, sea quarks and gluons. Since the cross sections at midrapidity are dominated by processes involving gluons the amount of their depletion is particularly important. We will therefore have a closer look on the results for dN/dy, d ¯E T /dy, and Ti by using two different gluon shadowing ratios, di ering strongly in size. As a matter of fact, the calculated quantities di er significantly.
We develop a relativistic model to describe the bound states of positive energy and negative energy in finite nuclei at the same time. Instead of searching for the negative-energy solution of the nucleon's Dirac equation, we solve the Dirac equations for the nucleon and the anti-nucleon simultaneously. The single-particle energies of negative-energy nucleons are obtained through changing the sign of the single-particle energies of positive-energy anti-nucleons. The contributions of the Dirac sea to the source terms of the meson fields are evaluated by means of the derivative expansion up to the leading derivative order for the one-meson loop and one-nucleon loop. After refitting the parameters of the model to the properties of spherical nuclei, the results of positive-energy sector are similar to that calculated within the commonly used relativistic mean field theory under the no-sea approximation. However, the bound levels of negative-energy nucleons vary drastically when the vacuum contributions are taken into account. It implies that the negative-energy spectra deserve a sensitive probe to the effective interactions in addition to the positive-energy spectra.
We develop a relativistic model to describe the bound states of positive energy and negative energy in finite nuclei at the same time. Instead of searching for the negative-energy solution of the nucleon s Dirac equation, we solve the Dirac equations for the nucleon and the anti-nucleon simultaneously. The single-particle energies of negative-energy nucleons are obtained through changing the sign of the single-particle energies of positive-energy anti-nucleons. The contributions of the Dirac sea to the source terms of the meson fields are evaluated by means of the derivative expansion up to the leading derivative order for the one-meson loop and one-nucleon loop. After refitting the parameters of the model to the properties of spherical nuclei, the results of positive-energy sector are similar to that calculated within the commonly used relativistic mean field theory under the no-sea approximation. However, the bound levels of negative-energy nucleons vary drastically when the vacuum contributions are taken into account. It implies that the negative-energy spectra deserve a sensitive probe to the e ective interactions in addition to the positive-energy spectra.
Kinetic freeze out models
(1999)
Freeze out of particles across a space-time hypersurface is discussed in kinetic models. The calculation of final momentum distribution of emitted particles is described for freeze out surfaces, with spacelike normals. The resulting non-equilibrium distribution does not resemble, the previously proposed, cut Jüttner distribution, and shows non-exponential pt-spectra similar to the ones observed in experiments. PACS: 24.10.Nz, 25.75.-q
The thesis entitled „Investigations on the significance of nucleo-cytoplasmic transport for the biological function of cellular proteins" aimed to unreveal molecular mechanisms in order to improve our understanding of the impact of nucleo-cytoplasmic transport on cellular functions. Within the scope of this work, it could be shown that regulated nucleo-cytoplasmic transport of a subfamily of homeobox transcription factors controlled their intra- and intercellular transport, and thereby influencing also their transcriptional activity. This study describes a novel regulatory mechanism, which could in general play an important role for the ordered differentiation of complex organisms. Besides cis-active transport Signals, also post-translational modifications can influence the localization and biological activity of proteins in trans. In addition to the known impact of phosphorylation on the transport and activity of STAT1, experimental evidence was provided demonstrating that acetylation affected the interaction of STAT1 with NF-kB p65, and subsequently modulated the expression of apoptosis-inducing NF-kB target genes. The impact of nucleo-cytoplasmic transport on the regulation of apoptosis was underlined by showing that the evolutionary conservation of a NES within the anti-apoptotic protein survivin plays an essential role for its dual function in the inhibition of apoptosis and ordered cell division. Since survivin is considered a bona fide cancer therapy target, these results strongly encourage future work to identify molecular decoys that specifically inhibit the nuclear export of survivin as novel therapeutics. In order to further dissect the regulation of nuclear transport and to efficiently identify transport inhibitors, cell-based assays are urgently required. Therefore, the cellular assay Systems developed in this work may not only serve to identify synthetic nuclear export and Import inhibitors but may also be applied in systematic RNAi-screening approaches to identify novel components of the transport machinery. In addition, the translocation based protease- and protein-interaction biosensors can be applied in various biological Systems, in particular to identify protein-protein interaction inhibitors of cancer relevant proteins. In summary, this work does not only underline the general significance of nucleo-cytoplasmic transport for cell biology, but also demonstrates its potential for the development of novel therapies against diseases like cancer and viral infections.
We investigate event-by-event fluctuations for ensembles with non-fixed multiplicity. Moments of event observable distributions, like total energy distribution, total transverse momentum distribution, etc, are shown to be related to the multi-body correlations present in the system. For classical systems, these moments reduce in the absence of any correlations to the mo- ments of particle inclusive momentum distribution. As a consequence, a zero value for the recently introduced Phi-variable is shown to indicate the van- ishing of two-body correlations from one part, and of correlations between multiplicity and momentum distributions from the other part. It is often misunderstood as a measure of the degree of equilibration in the system.
We investigate the hadronic cooling of a quark droplet within a microscopic model. The color flux tube approach is used to describe the hadronization of the quark phase. The model reproduces experimental particle ratios equally well compared to a static thermal hadronic source. Furthermore, the dynamics of the decomposition of a quark-gluon plasma is investigated and time dependent particle ratios are found.
Using a microscopic transport model together with a coalescence after-burner, we study the formation of deuterons in Au + Au central collisions at s = 200 AGeV . It is found that the deuteron transverse momentum distributions are strongly a ected by the nucleon space-momentum correlations, at the moment of freeze-out, which are mostly determined by the number of rescatterings. This feature is useful for studying collision dynamics at ultrarelativistic energies.
In continuum and fluid dynamical models, particles, which leave the system and reach the detectors, can be taken into account via freeze-out (FO) or final break-up schemes, where the frozen out particles are formed on a 3-dimensional hypersurface in space-time. Such FO descriptions are important ingredients of evaluations of two-particle correlation data, transverse-, longitudinal-, radial- and cylindrical- flow analyses, transverse momentum and transverse mass spectra and many other observables. The FO on a hypersurface is a discontinuity, where the pre FO equilibrated and interacting matter abruptly changes to non-interacting particles, showing an ideal gas type of behavior.
The modification of the width of the rho meson due to in-medium decays and collisions is evaluated. In high temperature and/or high density hadronic matter, the collision width is much larger than the one-loop decay width. The large width of the meson in matter seems to be consistent with some current interpretations of the e+e mass spectra measured at the CERN/SPS.
Plural semantics for natural language understanding : a computational proof-theoretic approach
(2005)
The semantics of natural language plurals poses a number of intricate problems – both from a formal and a computational perspective. In this thesis I investigate problems of representing, disambiguating and reasoning with plurals from a computational perspective. The work defines a computationally suitable representation for important plural constructions, proposes a tractable resolution algorithm for semantic plural ambiguities, and integrates an automatic reasoning component for plurals. My solution combines insights from formal semantics, computational linguistics and automated theorem proving and is based on the following main ideas. Whereas many existing approaches to plural semantics work on a model-theoretic basis using higher-order representation languages I propose a proof-theoretic approach to plural semantics based on a flat firstorder semantic representation language thus showing that a trade-off between expressive power and logical tractability can be found. The problem of automatic disambiguation of plurals is tackled by a deliberate decision to drastically reduce recourse to contextual knowledge for disambiguation but rely instead on structurally available and thus computationally manageable information. A further central aspect of the solution lies in carefully drawing the borderline between real ambiguity and mere indeterminacy in the interpretation of plural noun phrases. As a practical result of my computational proof-theoretic approach to plural semantics I can use my methods to perform automated reasoning with plurals by applying advanced firstorder theorem provers and model-generators available off-the shelf. The results are prototypically implemented within the two logic-oriented natural language understanding applications DRoPs and Attempto. DRoPs provides an automatic plural disambiguation component for uncontrolled natural language whereas Attempto works with a constructive disambiguation strategy for controlled natural language. Both systems provide tools for the automated analysis of technical texts allowing users for example to automatically detect inconsistencies, to perform question answering, to check whether a conjecture follows from a text or to find equivalences and redundancies.
Freeze out of particles across three dimensional space-time hypersurface is discussed in a simple kinetic model. The final momentum distribution of emitted particles, for freeze out surfaces with space-like normal, shows a non-exponential transverse momentum spectrum. The slope parameter of the pt distribution increases with increasing pt, in agreement with recently measured SPS pion and h spectra.
The effects of internal quark structure of baryons on the composition and structure of neutron star matter with hyperons are investigated in the quark- meson coupling (QMC) model. The QMC model is based on mean-field description of nonoverlapping spherical bags bound by self-consistent exchange of scalar and vector mesons. The predictions of this model are compared with quantum hadrodynamic (QHD) model calibrated to reproduce identical nuclear matter saturation properties. By employing a density dependent bag constant through direct coupling to the scalar field, the QMC model is found to exhibit identical properties as QHD near saturation density. Furthermore, this modified QMC model provides well-behaved and continuous solutions at high densities relevant to the core of neutron stars. Two additional strange mesons are introduced which couple only to the strange quark in the QMC model and to the hyperons in the QHD model. The constitution and structure of stars with hyperons in the QMC and QHD models reveal interesting di erences. This suggests the importance of quark structure e ects in the baryons at high densities. PACS number(s): 26.60.+c, 21.65.+f, 12.39.Ba, 24.85.+p