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Wilhelm H. Kegel : Nachruf
(2019)
We extend the parton‐hadron‐string dynamics (PHSD) transport approach in the partonic sector by explicitly calculating the total and differential partonic scattering cross sections as a function of temperature T and baryon chemical potential μB on the basis of the effective propagators and couplings from the dynamical quasiparticle model (DQPM) that is matched to reproduce the equation of state of the partonic system above the deconfinement temperature Tc from lattice quantum chromodynamics (QCD). We calculate the collisional widths for the partonic degrees of freedom at finite T and μB in the time‐like sector and conclude that the quasiparticle limit holds sufficiently well. Furthermore, the ratio of shear viscosity η over entropy density s, that is, η/s, is evaluated using the collisional widths and compared to lattice QCD(lQCD) calculations for μB = 0 as well. We find that the ratio η/s does not differ very much from that calculated within the original DQPM on the basis of the Kubo formalism. Furthermore, there is only a very modest change of η/s with the baryon chemical μB as a function of the scaled temperature T/Tc(μB). This also holds for a variety of hadronic observables from central A + A collisions in the energy range 5 GeV urn:x-wiley:00046337:media:asna201913708:asna201913708-math-0001 200 GeV when implementing the differential cross sections into the PHSD approach. Accordingly, it will be difficult to extract finite μB signals from the partonic dynamics based on “bulk” observables.
To gain a better understanding of complex mechanisms in biological systems, simultaneous control over multiple processes is key. To this purpose selective photouncaging has been developed. Photo-uncaging is an experimental scheme in which a molecule of interest has been inactivated synthetically and is activated by light. Usually a bond is cleaved and a leaving group is set free. The molecule which inactivates the molecule of interest and sets the leaving group free is called (photo-)cage. In a selective photo-uncaging scheme a number of leaving groups can be released independently, usually by irradiation with light of different wavelengths. This approach is, however, seriously limited in its applicability due to the properties of the involved cages and irradiation schemes. A major drawback is the usually quite broad UV-Vis absorption of the cages. This makes a selective activation by light difficult and limits the maximal number of independent cages severely.
Therefore, the aim of this thesis is to introduce the Vibrationally Promoted Electronic Resonance (VIPER) 2D-IR pulse sequence in a alternative selective uncaging scheme.
The VIPER 2D-IR pulse sequence is a spectroscopic tool which allows to generate 2D-IR signals whose lifetime are independent of the vibrational relaxation lifetime. It has been first used to monitor chemical exchange. It consists of a narrowband infared pump pulse, a subsequent UV-Vis pump pulse and a broadband infrared probe pulse. The UV-Vis pump pulse is off-resonant with regard to the UV-Vis absorption band. Electronic excitation becomes only possible, if the infrared pump pulse modulates the UV-Vis transition of the IR-excited molecule. This modulation brings the UV-Vis transition in resonance with the UV-Vis pump pulse. Thereby, only the molecules which were pre-excited with the infrared pulse can be excited into the electronically excited state. A computational prediction of the modulation was carried out by Jan von Cosel in the Burghardt group.
The narrowband infrared pump pulse can be used to selectively excite a subensemble of molecules in a mixture into an electronically excited state even if the UV-Vis spectra of all molecules are virtually identical. For this the sub-ensemble needs to exhibit an identifiable infrared spectrum. Combined with the introduction of isotope labels, which lead to changes in the infrared absorption spectra, the larger selectivity in the infrared region can be exploited for an alternative selective uncaging approach. In VIPER uncaging the infrared pump pulse selects the species and the subsequent UV-Vis pulse provides the energy needed for electronic excitation upon which the photo cleavage can occur.
After an introduction of the principle idea of uncaging and VIPER spectroscopy, the concept of VIPER uncaging is introduced and its limits and requirements are discussed. Some examples for possible VIPER cages are reviewed.
A coumarin molecule (7-diethylamino coumarin) which can release an azide group was chosen as a first test molecule for VIPER uncaging. Its isotopomers were characterized to determine suitable spectroscopic markers for successful uncaging and to find fitting experimental conditions. The chosen coumarin cage has an UV-Vis absorption band at approximately 380 nm and a steep flank on the high wavelength side of the band. The quantum yield for the azide compound is between 10-20 % depending on the solvent’s water content. The release was found to be on a picosecond timescale which is among the fastest known photo reactions, but the photo reaction mechanism has proven to be not straightforward. For the VIPER experiment on the mixture two isotopomers were chosen with a 13C atom at different positions. In one species a ring mode of the coumarin is changed by the 13C atom. In the other isotopomer the carbonyl stretching mode is influenced. The change in the ring mode region allows to select one species or the other with the infrared pre-excitation. Because of experimental difficulties only isotopomers with the same leaving group could be used. The successful selective electronic excitation of the individual isotopomers in a mixture was monitored by probing the carbonyl region.
As a second VIPER cage, para-hydroxyphenacyl (pHP) was chosen. A thiocyanate group was selected as leaving group. pHP cages have their electronic transition in the UV, with a maximum absorption at 290 nm. The shape of the spectrum is suitable and the quantum yield is very high, with values in the literature of up to 90 %. Also the photo reaction is well studied and the expected byproducts are well characterized. The chosen isotopologues were characterized spectroscopically. The resulting data on the photo reaction were in agreement with the mechanism proposed in the literature. The mixture for the VIPER experiment consisted of two isotopologues, where for one species all the C atoms in the ring were labelled and for the other the C-atom in the thiocyanate leaving group was labelled. Here the release of the different leaving groups, labelled and unlabelled thiocyanate, could be monitored selectively. This shows that it is possible to selectively release a molecule in a mixture of caged molecules by applying the VIPER pulse sequence.
The samples were synthesized by Matiss Reinfelds from the Heckel group and the VIPER experiments were done together with Carsten Neumann and with support
of the Bredenbeck group.
The leaving groups were chosen because of their infrared absorption which allowed to directly monitor the successful cleavage by spectroscopy. This was needed for the proof-of-concept experiment and to allow direct optimization of the experimental parameters but is not necessarily a requirement for VIPER uncaging.
Concerning the selectivity of the VIPER uncaging, the approach is at the moment mainly limited by the infrared pulse energy. The selective VIPER excitation is competing with unselective excitation directly by just the UV-Vis pulse. A more intense infrared pump pulse would increase only the selective VIPER excitation and thereby improve the contrast to the unspecific background.
To address this issue, the first steps towards an alternative infrared light generation are undertaken. In this alternative approach the infrared light for preexcitation is directly generated by difference frequency generation of the laser output, i.e. the high energy 800 nm fundamental, and the output of a non-collinear optical parametric amplifier (NOPA). To achieve a narrowband pump pulse the pulses are chirped before mixing. In the scope of this thesis a NOPA has been installed and the mixing has been tested with available test crystal medium. While infrared wavelength region and power were not in the aspired range with this alternative crystal the feasibility of mixing between a NOPA output and the fundamental could be shown.
Other possibilities to increase the contrast to the unspecific background excitation by the UV-Vis pump pulse are discussed. For most applications of selective VIPER uncaging the detection by fs-laser spectroscopy will not be needed and could be replaced by other methods e.g. chromatography. This will allow the experimental parameters of the VIPER pulse sequence to be changed in a way which reduces unspecific excitation i.e. reducing the UV-Vis-pump energy and result in much better contrast.
In conclusion, the experimental data in this thesis shows the VIPER pulse sequence to be applicable to selective uncaging schemes and indicates measures to arrive at the specificity necessary for uncaging applications. This thesis was focused on uncaging photo reactions with isotopomers and isotopologues, but other types of photo reactions could in principle be controlled in the same way. It should be possible to address different isomers in mixtures or different ground states of proteins selectively. The discussed experiments are a significant step towards control over photo reactions in mixtures.
Cortical circuits exhibit highly dynamic and complex neural activity. Intriguingly, cortical activity exhibits consistently two key features across observed species and brain areas. First, individual neurons tend to be co-active in spatially localized domains forming orderly arranged, modular layouts with a typical spatial scale. Second, cortical elements are correlated in their activity over large distances reflecting long-range network interactions distributed over several millimeters. Currently, it is unclear how these two fundamental properties emerge in the early developing cortical activity.
Here, I aim to fill this gap by combining analyses of chronic imaging data and network models of developing cortical activity. Neural recordings of spontaneous and visually evoked activity in primary visual cortex of ferrets during their early cortical development were obtained using in vivo 2-photon and widefield epi-fluorescence calcium imaging. Spontaneous activity was used to probe the early state of cortical networks as its spatiotemporal organization is independent of a stimulus-imposed structure, and it is already present early in cortical development prior to reliably evoked responses. To assess the mature functional organization of distributed networks in cortex, the tuning of neural responses to stimulus features, in particular to the orientation of an edge-like stimulus, was assessed. Cortical responses to moving gratings of varying orientations form an orderly arranged layout of orientation domains extending over several millimeters.
To begin with, I showed that spontaneous activity correlations extend over several millimeters, supporting the assumption of using spontaneous activity to assess distributed networks in cortex.
Next, I asked how distributed networks in the mature visual cortex - assessed by spontaneous activity correlations - are related to its fine-scale functional organization. I found that the spatially extended and modular spontaneous correlation patterns accurately predict the fine spatial structure of visually evoked orientation domains several millimeters away. These results suggest a close relation between spontaneous correlations and visually evoked responses on a fine spatial scale and across large spatial distances.
As the principles governing the functional organization and development of distributed network interactions in the neocortex remain poorly understood, I next asked how long range correlated activity arises early in development. I found that key features of mature spontaneous activity introduced in this work, including long-range spontaneous correlations, were present already early in cortical development prior to the maturation of long-range, horizontal connections, and the predicted mature orientation preference layout. Even after silencing feed-forward input drive by inactivating retina or thalamus, long-range correlated and modular activity robustly emerged in early cortex. These results suggest that local recurrent connections in early cortical circuits can generate structured long-range network correlations that guide the formation of visually-evoked distributed functional networks.
To investigate how these large-scale cortical networks emerge prior to the maturation and elaboration of long-range horizontal connectivity, I examined a statistical network model describing an ensemble of spatially extended spontaneous activity patterns. I found a direct relationship between the dimensionality of this ensemble of activity patterns and the decay of its correlation structure. Specifically, reducing the dimensionality of the ensemble leads to an increase in the spatial range of the correlation structure.
To test whether this mechanism could generate a long-range correlation structure in cortical circuits, I studied a dynamical network model implementing a dimensionality reduction mechanism. Based on previous work demonstrating that network heterogeneity reduces the dimensionality of activity patterns, I showed that by increasing the degree of heterogeneity in the network, the dimensionality of the ensemble of activity patterns decreases and in turn their correlations extend over a greater range. A comparison to experimental data revealed a quantitative match between the network model and the observations in vivo in several of the key features of the early cortex including the spatial scale of correlations. Low dimensionality of spontaneous activity thus might provide an organizational principle explaining the observed long-range correlation structure in the early cortex.
Finally, I asked whether a network with a biologically plausible architecture can generate modular activity. Several classical models showed that modular activity patterns can emerge via an intracortical mechanism involving lateral inhibition. However, this assumption appears to be in conflict with current experimental evidence. Moreover, these network models were not experimentally tested, so far. Here, I showed by using linear stability analysis that spatially localized self-inhibition relaxes the constraints on the connectivity structure in a network model, such that biologically more plausible network motifs with shorter ranging inhibition than excitation can robustly generate modular activity.
Importantly, I also provided several model predictions to make the class of network models experimentally testable in view of recent technological advancements in imaging and manipulation of cortical circuits. A critical prediction of the model is the decrease in spacing of active domains when the total amount of inhibition increases. These results provide a novel mechanism of how cortical circuits with short-range inhibition can form modular activity.
Taken together, this thesis provides evidence that the two described fundamental features of neural activity are already present in the early cortex and shows that activity with those features can be generated in network models with an architecture consistent with the early cortex using basic principles.
The last decades have brought tremendous progress in understanding the phase structure of the strongly interacting matter. This has been driven by studying heavy-ion collisions on the experimental side and Lattice QCD, functional approaches to QCD, perturbation theory and effective theories on the theoretical side. Of particular interest is the transition from hadrons to partonic degrees of freedom which is expected to occur at high temperatures or high baryon densities. These phases play an important role in the early universe and the core of neutron stars. Nowadays, the existence of a deconfined phase, i.e. Quark Gluon Plasma (QGP) and its phase transition at vanishing and small net-baryon densities, are well established. However, the situation at larger densities is less clear.
Complementary to the studies of matter at high temperatures and low net-baryon densities performed at RHIC and LHC, the proposed Compressed Baryonic Matter (CBM) experiment at the future FAIR facility, aims to explore the QCD phase diagram at very high baryon-net densities and moderate temperatures. The CBM research program includes the search for the deconfinement phase transition, the study of chiral symmetry restoration in super dense baryonic matter, the search for the critical endpoint, and the study of the nuclear equation of state at high densities. While other experiments (STAR-BES at BNL, BM@N at NICA) are suited to measure bulk observables, CBM is explicitly designed to access rare observables, such as multi-strange hadrons, dileptons, hypernuclei and charmonium. Therefore, a key feature of CBM is the very high interaction rate, exceeding those of contemporary and proposed nuclear collision experiments by several orders of magnitude. However, some of the rare probes have a complex signature, hidden in a background of several hundreds of charged tracks. This forbids a conventional, hardware-triggered readout; instead, the experiment combines self-triggered front-end electronics, fast and free-streaming data transport, online event reconstruction and online event selection.
The central detector for tracking and momentum determination of charged particles in the CBM experiment is the Silicon Tracking System (STS). It is designed to measure up to 700 charged particles in nucleus-nucleus collisions between 0.1 and 10 MHz interaction rate, to achieve a momentum resolution in 1 Tm dipole magnetic field better than 2%, and to be capable of identifying complex particle decays topologies, e.g., such with strangeness content. The STS comprises 8 tracking stations equipped with double-sided silicon microstrip sensors. Two million channels are read out with self-triggering electronics, matching the data streaming and on-line event analysis concept applied throughout the experiment. The detector’s functional building block consists of a silicon sensor, aluminum-kapton microcables and two front-end electronics boards integrated in a module. The custom-designed ASIC (STS-XYTER) implements the analog front-end, the digitizer and the generation of individual hit data for each signal.
Design of the front-end chip requires finding an optimal solution for time and input charge measurements with tight constraints: small area (58 μm channel pitch), low noise levels (below 1500 ENC(e− )), low power consumption (610 mW/channel), radiation hard architecture and speed requirements. Being a part of the first processing stage in the full readout and data acquisition chain, the characterization of the chip and its integration with the detector components is a crucial task. In this work, various methods and tools are established for testing and qualifying the ASIC analog front-end. A procedure for amplitude and timing calibration is developed using different functionalities of the chip. The procedure is optimized for our prototype system in order to achieve the best accuracy in the shortest amount of time. Results were verified using a gamma source and an external pulse generator, showing discrepancies below 5%.
Among the multiple operation requirements of the ASIC, the noise performance is of essential importance. The characterization of the chip noise is carried out as a function of a large number of parameters such as: low-voltage power regulators, input capacitance, shaping time, temperature and bond’s protective glue (glob-top). These studies allowed to optimize the ASIC configuration settings, to identify possible malfunctions in the low voltage powering scheme and to select possible glob-top materials to be used in the module assembly. Moreover, important differences are found among odd and even channels, which main cause was related to the bias scheme of the amplifiers of the two groups of channels. This effect has been corrected in the new version (v2.1) of the ASIC.
Despite the STS front-end electronics being located outside of the physics acceptance, they will be exposed to high fluxes of charged particles. Considering the SIS100 possible running scenario, the lifetime dose at the location of the electronics is expected not to exceed 800 krad. Consequently, the STS-XYTERv2 ASIC implements a radiation hard design based on dual-interlocked cells (DICE), and triple modular redundancy (TMR).
Multiple dedicated beam campaigns were carried out to evaluate the ASIC’s design in terms of immunity to single event upsets (SEU) errors and overall performance after a lifetime doses. The DICE cell SEU cross section was measured in a high-intensity proton beam. Result show a significant improvement of the SEU immunity in the STS-XYTERv2 compared to its predecessor, and allows to estimate the upset rate in the CBM running scenario, resulting in less than one SEU/ASIC/day.
The studies on the total ionizing dose (TID) show that the overall noise levels for the ASIC, at the end of the experiment lifetime, are expected to increase by approximately 40 – 60%. Moreover, they demonstrated that short periods of annealing at room temperature can favorably influence the noise performance of the chip.
The assembly and test of the STS modules, a complex process with multiple stages and a long learning curve, is illustrated in different parts of this work. The first prototype modules were built with the front-end board type B (FEBs-B), capable of reading out 128 channels for p and n side respectively. The studies were conducted with a relativistic proton beam of 1.7 GeV/c momentum at the COSY accelerator facility, Research Center Juelich, in March 2018. The campaign brought valuable insights to the development of an effective grounding and powering scheme for reading out the detectors. The signal-to-noise was measured for one of the prototype modules, resulting in values larger than 15 for both polarities. A deeper analysis into the collected data allowed the identification of a logic error in the ASIC that affected the readout rate and the quality of the data. This issue was corrected in the new version of the chip.
A precursor of the STS detector, named mini-STS (mSTS), has been built within the mCBM project carried out in FAIR Phase0. mSTS was built from 4 fully assembled detector modules. To ensure the proper operation of the ASICs that were used in the module assembly, it was required to develop a rigorous quality assurance procedure. A dedicated setup was built based on a custom designed pogo-pin station and a total of 339 chips were tested. More than 90% of good-quality and operational ASICs were obtained. In the mCBM beam campaign of March 2019, four detector modules were successfully operated in a close-to-final readout chain and valuable data were collected. The mSTS detector was exposed to the products of Ag+Au collisions at energies above 1.58 AGeV and overall interaction rates up to 106 , which resembles the real conditions of the CBM experiment.
Along this work, significant progress for the development of the STS detector modules was achieved. Techniques for characterization of the front-end electronics and the complete detector system were developed and worked out. They will be applied for QA of the components during the series production.
Measurement of ϒ(1S) elliptic flow at forward rapidity in Pb-Pb collisions at √sNN = 5.02 TeV
(2019)
The first measurement of the ϒ(1S) elliptic flow coefficient (v2) is performed at forward rapidity (2.5 < y < 4) in Pb–Pb collisions at √sNN = 5.02 TeV with the ALICE detector at the LHC. The results are obtained with the scalar product method and are reported as a function of transverse momentum (pT) up to 15 GeV/c in the 5%–60% centrality interval. The measured Υ(1S)v2 is consistent with 0 and with the small positive values predicted by transport models within uncertainties. The v2 coefficient in 2 < pT < 15 GeV/c is lower than that of inclusive J/ψ mesons in the same pT interval by 2.6 standard deviations. These results, combined with earlier suppression measurements, are in agreement with a scenario in which the Υ(1S) production in Pb–Pb collisions at LHC energies is dominated by dissociation limited to the early stage of the collision, whereas in the J/ψ case there is substantial experimental evidence of an additional regeneration component.
Surface plasmon polaritons on (silver) nanowires are promising components for future photonic technologies. Here, we study near-field patterns on silver nanowires with a scattering-type scanning near-field optical microscope that enables the direct mapping of surface waves. We analyze the spatial pattern of the plasmon signatures for different excitation geometries and polarization and observe a plasmon wave pattern that is canted relative to the nanowire axis, which we show is due to a superposition of two different plasmon modes, as supported by electromagnetic simulations including the influence of the substrate. These findings yield new insights into the excitation and propagation of plasmon polaritons for applications in nanoplasmonic devices.
We calculate ratios of higher-order susceptibilities quantifying fluctuations in the number of net-protons and in the net-electric charge using the Hadron Resonance Gas (HRG) model. We take into account the effect of resonance decays, the kinematic acceptance cuts in rapidity, pseudo-rapidity and transverse momentum used in the experimental analysis, as well as a randomization of the isospin of nucleons in the hadronic phase. By comparing these results to the latest experimental data from the STAR Collaboration, we determine the freeze-out conditions from net-electric charge and net-proton distributions and discuss their consistency.