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We tested the hypothesis that phonosemantic iconicity––i.e., a motivated resonance of sound and meaning––might not only be found on the level of individual words or entire texts, but also in word combinations such that the meaning of a target word is iconically expressed, or highlighted, in the phonetic properties of its immediate verbal context. To this end, we extracted single lines from German poems that all include a word designating high or low dominance, such as large or small, strong or weak, etc. Based on insights from previous studies, we expected to find more vowels with a relatively short distance between the first two formants (low formant dispersion) in the immediate context of words expressing high physical or social dominance than in the context of words expressing low dominance. Our findings support this hypothesis, suggesting that neighboring words can form iconic dyads in which the meaning of one word is sound-iconically reflected in the phonetic properties of adjacent words. The construct of a contiguity-based phono-semantic iconicity opens many venues for future research well beyond lines extracted from poems.
Weltweit stellt das kolorektale Karzinom die dritthäufigste Krebsdiagnose bei Männern und die zweithäufigste bei Frauen dar. Von den bekannten beeinflussbaren Risikofaktoren sind Ernährung, Rauchen und körperliche Aktivität zu nennen, hingegen gelten Alter, familiäre Belastung und männliches Geschlecht als nicht beeinflussbare Risikofaktoren. Neben Genmutationen, welche beispielsweise bei der Familiären Adenomatösen Polyposis coli und beim “Lynch Syndrom” eine wichtige Rolle spielen, kann auch die pathologisch verstärkte Expression von tumorrelevanten Proteinen wie z.B. induzierbare COX-2, Cyclin A, B und D, c-Fos, EGF, MMP-9, VEGF sowie das ubiquitäre RNA-Bindeprotein HuR maßgeblich zur Entstehung des Kolonkarzinoms beitragen. Viele der bislang identifizierten Zielgene des HuRs sind an der Regulation tumorpromovierender Eigenschaften wie Proliferation, Invasion, Metastasierung und Apoptose beteiligt, was HuR zu einem hochattraktiven Target der molekularen Tumortherapie macht. Bislang ist bekannt, dass eine gesteigerte HuR-Bindung an AREs in der 3’UTR vieler Zielgene entweder zur Stabilisierung und/oder
Translationsveränderung von kurzlebigen mRNAs von tumorrelevanten Genprodukten führen kann. Eine pathologisch erhöhte zytosolische HuR Akkumulation, welche bekanntlich oft mit einer ungünstigen Prognose der Tumorpatienten korreliert, wird jedoch im Wesentlichen als Folge eines fehlerhaft regulierten erhöhten Exportes des überwiegend im Zellkern lokalisierten HuR Proteins ins Zytoplasma (sogenanntes “HuR-Shuttling”) betrachtet, während genomische oder epigenetische Mechanismen vermutlich nur eine untergeordnete Rolle spielen. Der Gegenstand der vorliegenden Arbeit war die Aufklärung der bisher nur wenig bekannten zugrunde liegenden Mechanismen des erhöhten HuR-Shuttlings in der Kolonkarzinom-Zelllinie DLD-1 unter besonderen Berücksichtigung PKCδ-abhängiger Signalwege. Durch Zugabe des pharmakologischen PKCδ-Inhibitors Rottlerin konnte die subzelluläre HuR-Lokalisation in den Kolonkarzinom Zelllinien DLD-1 und SW-620 deutlich reduziert werden, wobei die maximale Wirkung erst nach einer Inhibitionszeit von 16 Stunden erreicht wurde. Diese Beobachtung lässt vermuten, dass Rottlerin die PKCδ Aktivität in DLD-1 Zellen hemmt. Hingegen konnten Inhibitoren von verschiedenen MAPK-Kinasen (SB203580, SP600125, PD98059, Raf-1-Inhibitor) die basale zytoplasmatische HuR Lokalisation nicht beeinflussten, ebensowenig der pharmakologische Inhibitor der Calcium-abhängigen PKCs (PKCα und PKCβ) Gö6976. Auf der anderen Seite bewirkte das Phorbolester PMA eine deutliche Steigerung der PKC-Aktivität. Des Weiteren wurde in dieser Arbeit nach tumorrelevanten Genen gesucht, deren Expression in humanen Kolonkarzinomzellen posttranskriptionell von HuR und gleichzeitig von PKCδ kontrolliert wird. Mit Hilfe von RNA-Pulldown Experimenten konnte gezeigt werden, dass die Hemmung der PKCδ funktionell zu einer starken Reduktion der an HuR-gebundenen mRNAs wie c-myc, cyclin A und D sowie COX-2 führt. Schließlich haben Aktivitätsmessungen der Gesamt-PKC-Aktivität gezeigt, dass diese in Kolonkarzinom-Zelllinien nachweisbar und damit basal aktiv ist. Die Untersuchungsergebnisse dieser Arbeit können zum besseren Verständnis der pathophysiologischen Bedeutung des ubiquitären RNA-Bindeproteins HuR für die Kolonkarzinogenese sowie der prokarzinogenen Rolle der PKCδ im Kolongewebe beitragen.
Zinc finger domains are highly structured and can mediate interactions to DNA, RNA, proteins, lipids, and small molecules. Accordingly, zinc finger proteins are very versatile and involved in many biological functions. Eukaryotes contain a wealth of zinc finger proteins, but zinc finger proteins have also been found in archaea and bacteria. Large zinc finger proteins have been well studied, however, in stark contrast, single domain zinc finger µ-proteins of less than 70 amino acids have not been studied at all, with one single exception. Therefore, 16 zinc finger µ-proteins of the haloarchaeon Haloferax volcanii were chosen and in frame deletion mutants of the cognate genes were generated. The phenotypes of mutants and wild-type were compared under eight different conditions, which were chosen to represent various pathways and involve many genes. None of the mutants differed from the wild-type under optimal or near-optimal conditions. However, 12 of the 16 mutants exhibited a phenotypic difference under at least one of the four following conditions: Growth in synthetic medium with glycerol, growth in the presence of bile acids, biofilm formation, and swarming. In total, 16 loss of function and 11 gain of function phenotypes were observed. Five mutants indicated counter-regulation of a sessile versus a motile life style in H. volcanii. In conclusion, the generation and analysis of a set of deletion mutants demonstrated the high importance of zinc finger µ-proteins for various biological functions, and it will be the basis for future mechanistic insight.
Immune checkpoint modulation in cancer has been demonstrated as a high-value therapeutic strategy in many tumor entities. VISTA is an immune checkpoint receptor regulating T-cell function. To the best of our knowledge, nothing is known about the expression and prognostic impact of VISTA on tumor infiltrating lymphocytes (TILs) in the tumor microenvironment of esophageal adenocarcinoma (EAC). We analyzed in total 393 EACs within a test-cohort (n = 165) and a validation-cohort (n = 228) using a monoclonal antibody (clone D1L2G). These data were statistically correlated with clinical as well as molecular data. 22.2% of the tumor cohort presented with a VISTA expression on TILs. These patients demonstrated an improved median overall survival compared to patients without VISTA expression (202.2 months vs. 21.6 months; p < 0.0001). The favorable outcome of VISTA positive tumors is significant in the entire cohort but mainly driven by the general better prognosis of T1/T2 tumors. However, in the pT1/2 group, VISTA positive tumors show a tremendous survival benefit compared to VISTA negative tumors revealing real long-term survivors in this particular subgroup. The survival difference is independent of the T-stage. This unique characteristic could influence neoadjuvant therapy concepts for EAC, since a profit of therapy could be reduced in the already favorable subgroup of VISTA positive tumors. VISTA emerges as a prognostic biomarker for long-term survival especially in the group of early TNM-stages. Future studies have to show the relevance of VISTA positive TILs within a tumor concerning response to specific immune checkpoint inhibition.
Over the last years non-invasive brain stimulation techniques (NIBS) have become the ultimate tool to gain major insights about the mechanisms responsible for sensory, motor, and cognitive functions. A big issue surrounding transcranial magnetic stimulation (TMS) and transcranial electric stimulation (TES) methods is the disagreement about the aftereffects reported by studies using similar (if not the same) stimulation protocols (Robertson et al., 2003; Horvath et al., 2014). The purpose of this research topic was to collect information regarding different stimulation procedures to assess their capacity to modulate cognition including also, appropriate control and sham conditions. The first part of this report will cover contributions related to TES which were limited to transcranial direct current stimulation methods (tDCS). This will be followed by studies dedicated to real TMS and sham methodology. ...
This paper investigates how the major outcome of a confirmatory factor investigation is preserved when scaling the variance of a latent variable by the various scaling methods. A constancy framework, based upon the underlying factor analysis formula that enables scaling by modifying components through scalar multiplication, is described; a proof is included to demonstrate the constancy property of the framework. It provides the basis for a scaling method that enables the comparison of the contribution of different latent variables of the same confirmatory factor model to observed scores, as for example, the contributions of trait and method latent variables. Furthermore, it is shown that available scaling methods are in line with this constancy framework and that the criterion number included in some scaling methods enables modifications. The impact of the number of manifest variables on the scaled variance parameter can be modified and the range of possible values. It enables the adaptation of scaling methods to the requirements of the field of application.
Congenital lower urinary-tract obstruction (LUTO) is caused by anatomical blockage of the bladder outflow tract or by functional impairment of urinary voiding. About three out of 10,000 pregnancies are affected. Although several monogenic causes of functional obstruction have been defined, it is unknown whether congenital LUTO caused by anatomical blockage has a monogenic cause. Exome sequencing in a family with four affected individuals with anatomical blockage of the urethra identified a rare nonsense variant (c.2557C>T [p.Arg853∗]) in BNC2, encoding basonuclin 2, tracking with LUTO over three generations. Re-sequencing BNC2 in 697 individuals with LUTO revealed three further independent missense variants in three unrelated families. In human and mouse embryogenesis, basonuclin 2 was detected in lower urinary-tract rudiments. In zebrafish embryos, bnc2 was expressed in the pronephric duct and cloaca, analogs of the mammalian lower urinary tract. Experimental knockdown of Bnc2 in zebrafish caused pronephric-outlet obstruction and cloacal dilatation, phenocopying human congenital LUTO. Collectively, these results support the conclusion that variants in BNC2 are strongly implicated in LUTO etiology as a result of anatomical blockage.
Burkitt lymphoma (BL) is the most common B-cell lymphoma in children. Within the International Cancer Genome Consortium (ICGC), we performed whole genome and transcriptome sequencing of 39 sporadic BL. Here, we unravel interaction of structural, mutational, and transcriptional changes, which contribute to MYC oncogene dysregulation together with the pathognomonic IG-MYC translocation. Moreover, by mapping IGH translocation breakpoints, we provide evidence that the precursor of at least a subset of BL is a B-cell poised to express IGHA. We describe the landscape of mutations, structural variants, and mutational processes, and identified a series of driver genes in the pathogenesis of BL, which can be targeted by various mechanisms, including IG-non MYC translocations, germline and somatic mutations, fusion transcripts, and alternative splicing.
Supersaturating formulations are widely used to improve the oral bioavailability of poorly soluble drugs. However, supersaturated solutions are thermodynamically unstable and such formulations often must include a precipitation inhibitor (PI) to sustain the increased concentrations to ensure that sufficient absorption will take place from the gastrointestinal tract. Recent advances in understanding the importance of drug-polymer interaction for successful precipitation inhibition have been encouraging. However, there still exists a gap in how this newfound understanding can be applied to improve the efficiency of PI screening and selection, which is still largely carried out with trial and error-based approaches. The aim of this study was to demonstrate how drug-polymer mixing enthalpy, calculated with the Conductor like Screening Model for Real Solvents (COSMO-RS), can be used as a parameter to select the most efficient precipitation inhibitors, and thus realise the most successful supersaturating formulations. This approach was tested for three different Biopharmaceutical Classification System (BCS) II compounds: dipyridamole, fenofibrate and glibenclamide, formulated with the supersaturating formulation, mesoporous silica. For all three compounds, precipitation was evident in mesoporous silica formulations without a precipitation inhibitor. Of the nine precipitation inhibitors studied, there was a strong positive correlation between the drug-polymer mixing enthalpy and the overall formulation performance, as measured by the area under the concentration-time curve in in vitro dissolution experiments. The data suggest that a rank-order based approach using calculated drug-polymer mixing enthalpy can be reliably used to select precipitation inhibitors for a more focused screening. Such an approach improves efficiency of precipitation inhibitor selection, whilst also improving the likelihood that the most optimal formulation will be realised.
Hydride transfers play a crucial role in a multitude of biological redox reactions and are mediated by flavin, deazaflavin or nicotinamide adenine dinucleotide cofactors at standard redox potentials ranging from 0 to –340 mV. 2-Naphthoyl-CoA reductase, a key enzyme of oxygen-independent bacterial naphthalene degradation, uses a low-potential one-electron donor for the two-electron dearomatization of its substrate below the redox limit of known biological hydride transfer processes at E°’ = −493 mV. Here we demonstrate by X-ray structural analyses, QM/MM computational studies, and multiple spectroscopy/activity based titrations that highly cooperative electron transfer (n = 3) from a low-potential one-electron (FAD) to a two-electron (FMN) transferring flavin cofactor is the key to overcome the resonance stabilized aromatic system by hydride transfer in a highly hydrophobic pocket. The results evidence how the protein environment inversely functionalizes two flavins to switch from low-potential one-electron to hydride transfer at the thermodynamic limit of flavin redox chemistry.