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In Chinese medicine acupuncture points are treated by physical stimuli to counteract various diseases. These stimuli include mechanical stress as applied during the needle manipulation or tuina, high temperatures as applied during moxibustion, and red laser light applied during laser acupuncture. This study aimed to investigate cellular responses to stimuli that might occur in the tissue of acupuncture points. Since they have a characteristically high density of mast cells that degranulate in response to acupuncture, we asked whether these processes lead to ATP release. We tested in in vitro experiments on mast cells of the human mast-cell line HMC-1 the effects of the physical stimuli; mechanical stress was applied by superfusion of the cells with hypotonic solution, heat was applied by incubation of the cells at 52°C, and red laser light of 657 nm was used for irradiation. We demonstrate that all the stimuli induce ATP release from model human mast HMC-1 cells, and this release is associated with an intracellular free Ca2+ rise. We hypothesize that ATP released from mast cells supplements the already known release of ATP from keratinocytes and, by acting on P2X receptors, it may serve as initial mediator of acupuncture-induced analgesia.
Renal mesangial cells express high levels of matrix metalloproteinase 9 (MMP-9) in response to inflammatory cytokines such as interleukin (IL)-1β. We demonstrate here that the stable ATP analog adenosine 5′-O-(thiotriphosphate) (ATPγS) potently amplifies the cytokine-induced gelatinolytic content of mesangial cells mainly by an increase in the MMP-9 steady-state mRNA level. A Luciferase reporter gene containing 1.3 kb of the MMP-9 5′-promoter region showed weak responses to ATPγS but confered a strong ATP-dependent increase in Luciferase activity when under the additional control of the 3′-untranslated region of MMP-9. By in vitro degradation assay and actinomycin D experiments we found that ATPγS potently delayed the decay of MMP-9 mRNA. Gel-shift and supershift assays demonstrated that three AU-rich elements (AREs) present in the 3′-untranslated region of MMP-9 are constitutively bound by complexes containing the mRNA stabilizing factor HuR. The RNA binding of these complexes was markedly increased by ATPγS. Mutation of each ARE element strongly impaired the RNA binding of the HuR containing complexes. Reporter gene assays revealed that mutation of one ARE did not affect the stimulatory effects by ATPγS, but mutation of all three ARE motifs caused a loss of ATP-dependent increase in luciferase activity without affecting IL-1β-inducibility. By confocal microscopy we demonstrate that ATPγS increased the nucleo cytoplasmic shuttling of HuR and caused an increase in the cytosolic HuR level as shown by cell fractionation experiments. Together, our results indicate that the amplification of MMP-9 expression by extracellular ATP is triggered through mechanisms that likely involve a HuR-dependent rise in MMP-9 mRNA stability.
The volume changes of cesium under pressure are discussed with respect to the packing density of the atoms and valence. The element is univalent in densely packed Cs I and Cs II. Valence increases in Cs III (packing density q = 0.973), in Cs IV (q = 0.943), in Cs V (q ~ 0.99), and in close packed Cs VI. The diminuition of volume beyond ~ 15 GPa is caused by this increase only which implies that electrons of the fifth shell act as valence electrons.
The volume changes of solid iodine under pressure are discussed with respect to the packing density of the atoms and to valence. The packing density of solid iodine which is 0.805 under ambient pressure increases to 0.976 in monoatomic iodine-II, 0.993 in iodine-III, and 1 in fcc iodine-IV. Simultaneously, the valence increases from 1 in the free molecule to 1.78 in the crystal structure under ambient pressure, 2.72 – 2.81 in iodine-II, 2.86 – 2.96 in iodine-III, and 3 in fcc iodine-IV. The valence then remains constant up to about 180 GPa and rises moderately to 3.15 at the highest investigated pressure of 276 GPa. Parameters for calculating bond numbers, valences and atomic volumes of densely packed halogens, hydrogen, oxygen, and nitrogen are given.
Relationships between bond lengths and bond numbers and also between atomic volumes and valencies are derived and parameters for their calculation are given for the s-block, p-block, and d-block metals. From the atomic volumes under pressure, the valencies of three solid lanthanoids have been confirmed or redetermined: La 3; Ce 2. 3. and 4; Yb 2 and 3.
In the body-centered cubic structure and in closest sphere-packings the atoms are arranged to give structures with equal densities. A measure of the packing density of atoms is derived. Several crystal structures of elements, including the bcc structure and the closest sphere packings, represent a state of maximum density in which the atomic volume is characteristic of each element. From any crystal structure of an element its atomic volume in this state can be calculated to a good approximation.
Atomistic molecular dynamics approach for channeling of charged particles in oriented crystals
(2015)
Der Gitterführungseffekt ist der Prozess der Ausbreitung von geladenen Teilchen entlang der Ebenen oder Achsen von kristallinen Materialien. Seit den 1960er Jahren ist dieser Effekt weitgehend theoretisch und experimentell untersucht worden. Dieser Effekt wurde für die Manipulation von Hochenergiestrahlen, die Hochpräzisionsstruktur- und -fehleranalyse von kristallinen Medien und die Herstellung von hochenergetischer Strahlung angewendet. Zur Abstimmung der Parameter der Gitterführung und Gitterführungsstrahlung wurde dieser Prozess für den Fall von künstlich nanostrukturierten Materialien, wie gebogenen Kristallen, Nanoröhren und Fullerit, angenommen. In den letzten Jahren wurde das Konzept des kristallinen Undulators formuliert und getestet, das besondere Eigenschaften der Strahlung aufgrund der Gitterführung von Projektilen in regelmäßig gebogenen Kristallen vorhersagt.
In dieser Arbeit werden die Prozesse der Gitterführung von Sub- und Multi-GeV-Elektronen und -Positronen durch den atomistischen Molekulardynamik-Ansatz untersucht. Die Ergebnisse dieser Studien wurden in einer Reihe von Artikeln während meiner Promotion in Frankfurt vorgestellt. Dieser Ansatz ermöglicht die Simulation komplexer Fälle von Gitterführung in geraden, gebogenen und periodisch gebogenen Kristallen aus reinen kristallinen Materialien und von gemischten Materialien wie Si-Ge-Kristallen, in mehrschichtigen und nanostrukturierten kristallinen Systemen. Die Arbeit beschreibt die Methode der Simulationen, stellt Ergebnisse von Simulationen für verschiedene Fälle vor und vergleicht die Ergebnisse von Simulationen mit aktuellen experimentellen Daten. Die Ergebnisse werden mit Schätzungen der dechanneling-Länge verglichen, dem Anteil der gittergeführten Projektile, der Winkelverteilung der ausgehenden Projektile und des Strahlungsspektrums.
In this paper we discuss two contrasting views of exponence in inflectional morphology: the atomistic view, where content is associated individually with minimal segmentable morphs, and the holistic view, where the association is made for the whole word between complex content and constellations of morphs. On the basis of data from Estonian and Swahili, we argue that an adequate theory of inflection should be able to accomodate both views. We then show that the framework of Information-based Morphology (Crysmann and Bonami, 2016) is indeed compatible with both views, thanks to relying on realisation rules that associate m units of forms with n units of content.
Atomic-level analyses of non-native protein ensembles constitute an important aspect of protein folding studies to reach a more complete understanding of how proteins attain their native form exhibiting biological activity. Previously, formation of hydrophobic clusters in the 6 M urea-denatured state of an ultrafast folding mini-protein known as TC5b from both photo-CIDNP NOE transfer studies and FCS measurements was observed. Here, we elucidate the structural properties of this mini-protein denatured in 6 M urea performing 15N NMR relaxation studies together with a thorough NOE analysis. Even though our results demonstrate that no elements of secondary structure persist in the denatured state, the heterogeneous distribution of R2 rate constants together with observing pronounced heteronuclear NOEs along the peptide backbone reveals specific regions of urea-denatured TC5b exhibiting a high degree of structural rigidity more frequently observed for native proteins. The data are complemented with studies on two TC5b point mutants to verify the importance of hydrophobic interactions for fast folding. Our results corroborate earlier findings of a hydrophobic cluster present in urea-denatured TC5b comprising both native and non-native contacts underscoring their importance for ultra rapid folding. The data assist in finding ways of interpreting the effects of pre-existing native and/or non-native interactions on the ultrafast folding of proteins; a fact, which might have to be considered when defining the starting conditions for molecular dynamics simulation studies of protein folding.
The great majority of the known nuclides with Z>40, including the so-called stable nuclides, are metastable with respect to several modes of spontaneous superasymmetric splitting. A model extended from the fission theory of alpha decay allows one to estimate the lifetimes and the branching ratios relative to the alpha decay for these natural radioactivities. From a huge amount of systematic calculations it is concluded that the process should proceed with maximum intensity in the trans-lead nuclei, where the minimum lifetime is obtained from parent-emitted heavy ion combinations leading to a magic (208Pb) or almost magic daughter nucleus. More than 140 nuclides with atomic number smaller than 25 are possible candidates to be emitted from heavy nuclei, with half-lives in the range of 1010–1030 s: 5He, 8–10Be, 11,12B, 12–16C, 13–17N, 15–22O, 18–23F, 20–26Ne, 23–28Na, 23–30Mg, 27–32Al, 28–36Si, 31–39P, 32–42S, 35–45Cl, 37–47Ar, 40–49 K, 42-51. . .Ca, 44–53 Sc, 46–53Ti, 48–54V, and 49–55 Cr. The shell structure and the pairing effects are clearly manifested in these new decay modes.