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Micro-computed tomography for natural history specimens: a handbook of best practice protocols
(2019)
Micro-computed tomography (micro-CT or microtomography) is a non-destructive imaging technique using X-rays which allows the digitisation of an object in three dimensions. The ability of micro-CT imaging to visualise both internal and external features of an object, without destroying the specimen, makes the technique ideal for the digitisation of valuable natural history collections. This handbook serves as a comprehensive guide to laboratory micro-CT imaging of different types of natural history specimens, including zoological, botanical, palaeontological and geological samples. The basic principles of the micro-CT technology are presented, as well as protocols, tips and tricks and use cases for each type of natural history specimen. Finally, data management protocols and a comprehensive list of institutions with micro-CT facilities, micro-CT manufacturers and relative software are included.
We describe a long-unnamed Chaetopterus Cuvier, 1830 species from southern California, using a combination of DNA barcoding and detailed morphological investigation employing highresolution X-ray microtomography (micro-CT). Chaetopterus dewysee sp. nov. is not only one of the most dominant annelids in the benthic communities of the shallow end of the La Jolla submarine canyon, but also a well-established model for studying bioluminescence and has a published transcriptome. The description and naming of this southern Californian Chaetopterus is a step towards the muchneeded revision of the group’s taxonomy and towards resolving the confusion over the 'cosmopolitan' Chaetopterus variopedatus species complex. Micro-CT data showing details of both internal and external anatomy has been made freely available as the first annelid cybertype.