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There are 63 known species of Thecaphora (Glomosporiaceae, Ustilaginomycotina), a third of which occur on Asteraceae. These smut fungi produce yellowish-brown to reddish-brown masses of spore balls in specific, mostly regenerative, plant organs. A species of Thecaphora was collected in the flower heads of Anthemis chia (Anthemideae, Asteraceae) on Rhodes Island, Greece, in 2015 and 2017, which represents the first smut record of a smut fungus on a host plant species in this tribe. Based on its distinctive morphology, host species and genetic divergence, this species is described as Thecaphora anthemidis sp. nov. Molecular barcodes of the ITS region are provided for this and several other species of Thecaphora. A phylogenetic and morphological comparison to closely related species showed that Th. anthemidis differed from other species of Thecaphora. Thecaphora anthemidis produced loose spore balls in the flower heads and peduncles of Anthemis chia unlike other flower-infecting species.
The fungal genus Pestalotiopsis s.l. contains approximately 300 described species and is globally distributed. The monotypic genus Pestalotia is considered the closest relative of Pestalotiopsis s.l. This study aims to investigate the diversity and systematics within Pestalotiopsis s.l. and its relation to Pestalotia. Therefore, an integrative approach is used considering molecular phylogeny methods as well as examination of morphological characters.
Recently, Pestalotiopsis s.l. was split into three genera with the addition of the newly erected Neopestalotiopsis and Pseudopestalotiopsis. The species of these genera are usually saprotrophic, phytoparasitic, or endophytic, and have been isolated from soil, air, and many kinds of anorganic material. The asexual fruiting bodies appear on infected plant material as black acervuli that release conidia. The conidia are important to examine for morphological taxon recognition. The number of conidial cells is the feature that distinguishes Pestalotiopsis s.l. spp. with five celled conidia, from Pestalotia pezizoides with six celled conidia. However, the significance of morphological characters is controversially discussed among mycologists. In recent years, 55 new species were described based on minor genetic distances and marginal or no morphological differences. Thus, the value of certain morphological characters and genetic markers need to be reconsidered.
In this study, 102 herbarium specimens of 26 described species, with an emphasis on plant pathogenic species from North America, have been morphologically examined and documented through drawings and photographs. Morphological examination was complemented with a comprehensive molecular dataset obtained from 191 cultures representing the genera Neopestalotiopsis, Pestalotia, Pestalotiopsis, Pseudopestalotiopsis, and Truncatella. One novelty of this work is that, besides the well-established markers ITS, TEF1, and ß-tubulin, the protein-coding genes MCM7 and TSR1 were successfully sequenced and included in the analyses. Phylogenies using Maximum Likelihood and Bayesian inference methods of single loci and the combined dataset were calculated. By comparison of these phylogenies, MCM7 was identified as the most powerful one in terms of phylogenetic resolution and statistical support of nodes and is proposed as an additional barcoding marker in Pestalotiopsis s.l.
In Pestalotiopsis, species delimitation was tested using the Baysian Phylogenetics and Phylogeography (BP&P) program that tests an existing species scenario against Bayesian inference methods under a multispecies coalescent model. The program supported only ten species out of the predetermined 19 species scenario. Measurements of conidia for species detected by BP&P were explored using a TukeyHSD-Test in the program R to find means that are significantly different from each other. This test revealed that combinations of morphological characters are required to distinguish between the ten species found by BP&P.
Another purpose of this work was to clarify the status of Pestalotia with regard to Pestalotiopsis s.l. Therefore, fresh epitypic material of Pestalotia pezizoides, was collected, isolated, and cultivated. The molecular analysis of a combined dataset of the gene regions ITS and LSU for species of Amphisphaeriales nested P. pezizoides in the genus Seiridium. Thus, synonymy of Pestalotia with Seiridium is proposed here. This is supported by morphology of the conidia. Further, an epitype is proposed for the type species of Pestalotiopsis, P. maculans. On the other hand, the recently proposed epitype of P. adusta is rejected here as it conflicts with the taxonomic hypothesis obtained in this study and its introduction is inconsistent with the formal requirements for epitypification. A new topotypic specimen is proposed instead. Additionally, several nomenclatural changes become necessary in many species examined. These include three new combinations and six synonyms of species of Pestalotiopsis s.l.
The conclusion of this work is that morphological data have potential as a valuable, inexpensive and easy way to recognize species. However, it is not the best method for species discovery and delimitation bearing in mind that in microfungi and many other organisms, individual plasticity and analogous structures are inadequately investigated. By phylogenetic analyses of molecular sequence data, it is possible to compare a great amount of equivalent characters and to delimit species that are morphologically cryptic. This is especially important since species of Pestalotiopsis s.l. mostly lack sexual structures that are helpful for morphological species delimitation in other groups of fungi. Thus, the Genealogical Concordance Species Concept (GCSC) finds its application in many fungal taxa. Conflicts in the genealogy between phylogenetic trees of different markers are interpreted as recombination of the genetic material within a linage. Accordingly, the change from conflict to congruence in a set of different phylogenetic trees can be seen as the species limit. It can be expected that increased application of the GCSC will lead to further approximation of described species numbers to the real number of species, especially in complicated groups like asexual microfungi.
The genus Thlaspi has been variously subdivided since its description by Linnaeus in 1753, but due to similarities in fruit shape several segregates have still not gained broad recognition, despite the fact that they are not directly related to Thlaspi. This applies especially to segregates now considered to belong to the tribe Coluteocarpeae, which includes several well-studied taxa, e.g., Noccaea caerulescens (syn. Thlaspi caerulescens), and the widespread Microthlaspi perfoliatum (syn. Thlaspi perfoliatum). The taxonomy of this tribe is still debated, as a series of detailed monographs on Coluteocarpeae was not published in English and a lack of phylogenetic resolution within this tribe was found in previous studies. The current study presents detailed phylogenetic investigations and a critical review of morphological features, with focus on taxa previously placed in Microthlaspi. Based on one nuclear (ITS) and two chloroplast (matK, trnL-F) loci, four strongly supported major groups were recovered among the Coluteocarpeae genera included, corresponding to Ihsanalshehbazia gen. nov., Friedrichkarlmeyeria gen. nov., Microthlaspi s.str., and Noccaea s.l. In addition, two new species of Microthlaspi, M. sylvarum-cedri sp. nov. and M. mediterraneo-orientale sp. nov., were discovered, which are well supported by both morphological and molecular data. Furthermore, M. erraticum comb. nov. (diploid) and M. perfoliatum s.str. (polyploid) were shown to be distinct species, phylogenetically widely separate, but with some overlap in several morphological characters. Detailed descriptions, notes on taxonomy, geographical distribution, and line drawings for the new species and each species previously included in Microthlaspi are provided. In addition, the current taxonomic state of the tribe Coluteocarpeae is briefly discussed and it is concluded that while several annual taxa are clearly distinct from Noccaea, many perennial taxa, after thorough phylogenetic and morphological investigations, may have to be merged with this genus.
The area comprising the Pyrenees, Northeast Spain, Southern France and Corsica-Sardinia supports a large part of the diversity of Lumbricidae earthworms, including most species of the endemic genera Prosellodrilus, Cataladrilus and Scherotheca. In this region, the probability of encountering new species for science is significant, especially in scarcely sampled localities. In this study, we describe two unidentified species recently collected in the Hyères Archipelago (France), which we assigned to the genera Cataladrilus and Scherotheca based on morphological characters and molecular phylogenetic analyses. Other species of Scherotheca from Montpellier (including the type species of the genus, Sc. gigas gigas) were included in the analysis to clarify their conflicting systematics. A reduced molecular marker set (COI, 16S, 28S and ND1) proved as successful as larger marker sets for identifying phylogenetic relationships within the Lumbricidae. Remarkable disjunctions between both Cataladrilus porquerollensis Marchán & Decäens sp. nov., Scherotheca portcrosana Marchán & Decäens sp. nov. and their most closely related relatives, suggesting a strong influence of paleogeographic events on the earthworm fauna of the area and a possible role of near-shore islands as refugia for relict taxa. Genetic distances and branch lengths supported the elevation of some subspecies of Scherotheca to specific status as well as the retention of other subspecies, highlighting the importance of testing for such delimitation with molecular methods.
A new genus of derelomine flower weevil (Curculionidae: Derelomini sensu Franz 2006), Ebenacobius Haran gen. nov., is described to accommodate a clade of species morphologically and phylogenetically distinct from other genera in this tribe. This genus can be diagnosed as follows: protibiae armed with an apical mucro, claws free, eye convexity exceeding the contour of head in dorsal view and forehead with a median furrow. In total, 19 species are recognized in this genus; 14 species are described as new (E. curvisetis Haran gen. et sp. nov.; E. duplicatus Haran gen. et sp. nov.; E. grobbelaarae Haran gen. et sp. nov.; E. hessei Haran gen. et sp. nov.; E. hippopotamorum Haran gen. et sp. nov.; E. kuscheli Haran gen. et sp. nov.; E. mulanjensis Haran gen. et sp. nov.; E. oberprieleri Haran gen. et sp. nov.; E. rectirostris Haran gen. et sp. nov.; E. san Haran gen. et sp. nov.; E. pedi Haran gen. et sp. nov.; E. thoracicus Haran gen. et sp. nov.; E. tsonga Haran gen. et sp. nov. and E. xhosa Haran gen. et sp. nov.), five species of Derelomus Schoenherr (D. atratus Hesse; D. costalis Fåhraeus; D. incognitus Hesse; D. rhodesianus Hesse; D. turneri Marshall) are hereby transferred to Ebenacobius gen. nov. and one species name is placed in synonymy (Derelomus rugosicollis Hesse, 1929 = Derelomus costalis Fåhraeus, 1844 syn. nov.). Members of Ebenacobius gen. nov. seem to develop in inflorescences of dicot plants, with larval stages of at least two species recovered from the flowers of Euclea species (Ebenaceae). A key to the continental African genera of Derelomini and to species of Ebenacobius gen. nov. is provided. Pictures of habitus and terminalia of adults, along with distribution and life history data are also provided for each species.
With about 250 species, the genus Blaps Fabricius, 1775 is one of the most diverse genera of darkling beetles (Coleoptera: Tenebrionidae: Tenebrioninae: Blaptini: Blaptina). In this study, we provide new insights on the evolutionary relationships of Blaps species using a combined molecular and morphological dataset encompassing 69 distinct Blaps species and subspecies (105 specimens in total, all belonging to the subgenus Blaps), four other representatives of the tribe Blaptini (from the subtribes Gnaptorina, Gnaptorinina and Prosodina) and 12 outgroup species. Five new species of Blaps are also described within the subgenus Blaps: B. effeminata sp. nov. from Libya, B. intermedia sp. nov. from Morocco, B. maldesi sp. nov. from Algeria, B. nitiduloides sp. nov. from Algeria and Tunisia and B. teocchii sp. nov. from Tunisia. The results of the phylogenetic analyses indicate that the genus Blaps is likely paraphyletic; the two highlighted clades are morphologically distinct and correspond to groups previously referred to as sections (I and II) within the subgenus Blaps. This suggests the need for more phylogenetic studies in order to clarify the status of the various genera and subgenera belonging to the tribe Blaptini.
Habenaria karstica J.A.N.Bat. sp. nov., a new species from limestone outcrops (i.e., karst) in the State of Minas Gerais, Brazil, is described. The new species is ecologically very distinct since it is the only Neotropical species of the genus that grows on limestone outcrops under full sun, associated with mat-forming saxicolous plants. It is morphologically similar to species of the Habenaria repens complex, and separation is only possible through a combination of morphological characters. Bayesian and parsimony phylogenetic analyses based on nuclear (rDNA ITS, ETS) and plastid (matK-trnK, rps16-trnK) DNA markers revealed that H. karstica belongs to H. sect. Spathaceae. The new species, however, differs in floral morphology from the other species in this clade. A survey of the literature and public plants datasets revealed 122 species and 58 genera of Orchidaceae in karsts of Brazil. Although small compared to the family’s diversity in the country, Orchidaceae is among the families with the highest number of species in some karst localities. Our results indicate that approximately 97% of Orchidaceae found in karsts of Brazil is not limited to limestone outcrops areas, and that species composition of each locality is primarily determined by the regional flora and the biome in which it is located.