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The lipid status in patients with ulcerative colitis : Sphingolipids are disease-dependent regulated
(2019)
The factors that contribute to the development of ulcerative colitis (UC), are still not fully identified. Disruption of the colon barrier is one of the first events leading to invasion of bacteria and activation of the immune system. The colon barrier is strongly influenced by sphingolipids. Sphingolipids impact cell–cell contacts and function as second messengers. We collected blood and colon tissue samples from UC patients and healthy controls and investigated the sphingolipids and other lipids by LC-MS/MS or LC-QTOFMS. The expression of enzymes of the sphingolipid pathway were determined by RT-PCR and immunohistochemistry. In inflamed colon tissue, the de novo-synthesis of sphingolipids is reduced, whereas lactosylceramides are increased. Reduction of dihydroceramides was due to posttranslational inhibition rather than altered serine palmitoyl transferase or ceramide synthase expression in inflamed colon tissue. Furthermore, in human plasma from UC-patients, several sphinglipids change significantly in comparison to healthy controls. Beside sphingolipids free fatty acids, lysophosphatidylcholines and triglycerides changed significantly in the blood of colitis patients dependent on the disease severity. Our data indicate that detraction of the sphingolipid de novo synthesis in colon tissue might be an important trigger for UC. Several lipids changed significantly in the blood, which might be used as biomarkers for disease control; however, diet-related variabilities need to be considered.
From a global viewpoint, a lot of time is spent within the indoor air compartment of vehicles. A German study on mobility has revealed that, on average, people spend 45 minutes per day inside vehicles. In recent years the number of cars has increased to around 43 million vehicles in private households. This means that more than one car can be used in every household. The ratio has been growing, especially in eastern Germany and rural areas. "Overall and especially outside the cities, the car remains by far number one mode of transport, especially in terms of mileage". Therefore, numerous international studies have addressed different aspects of indoor air hygiene, in the past years. In this paper, meaningful original studies on car indoor air pollution, related to VOCs, COx, PMs, microbials, BFRs, OPFRs, cigarettes, electronic smoking devices, high molecular weight plasticizer, and NOx are summarized in the form of a review. This present review aimed to summarize recently published studies in this important field of environmental medicine and points to the need for further studies with special recommendations for optimizing the interior air hygiene.
Environmental niche modelling is an acclaimed method for estimating species’ present or future distributions. However, in marine environments the assembly of representative data from reliable and unbiased occurrences is challenging. Here, we aimed to model the environmental niche and distribution of marine, parasitic nematodes from the Pseudoterranova decipiens complex using the software Maxent. The distribution of these potentially zoonotic species is of interest, because they infect the muscle tissue of host species targeted by fisheries. To achieve the best possible model, we used two different approaches. The land distance (LD) model was based on abiotic data, whereas the definitive host distance (DHD) model included species-specific biotic data. To assess whether DHD is a suitable descriptor for Pseudoterranova spp., the niches of the parasites and their respective definitive hosts were analysed using ecospat. The performance of LD and DHD was compared based on the variables’ contribution to the model. The DHD-model clearly outperformed the LD-model. While the LD-model gave an estimate of the parasites’ niches, it only showed the potential distribution. The DHD-model produced an estimate of the species’ realised distribution and indicated that biotic variables can help to improve the modelling of data-poor, marine species.
Abiotic formation of n-alkane hydrocarbons has been postulated to occur within Earth's crust. Apparent evidence was primarily based on uncommon carbon and hydrogen isotope distribution patterns that set methane and its higher chain homologues apart from biotic isotopic compositions associated with microbial production and closed system thermal degradation of organic matter. Here, we present the first global investigation of the carbon and hydrogen isotopic compositions of n-alkanes in volcanic-hydrothermal fluids hosted by basaltic, andesitic, trachytic and rhyolitic rocks. We show that the bulk isotopic compositions of these gases follow trends that are characteristic of high temperature, open system degradation of organic matter. In sediment-free systems, organic matter is supplied by surface waters (seawater, meteoric water) circulating through the reservoir rocks. Our data set strongly implies that thermal degradation of organic matter is able to satisfy isotopic criteria previously classified as being indicative of abiogenesis. Further considering the ubiquitous presence of surface waters in Earth’s crust, abiotic hydrocarbon occurrences might have been significantly overestimated.
Der betongraue Bunker ist von Zwangsarbeitern der Nationalsozialisten im Zweiten Weltkrieg errichtet worden. Geplant war er als Luftschutzbunker für die Mitarbeiter und Kunden der Reichsbahn, damit sie sich im Ernstfall vom nah gelegenen Bahnhof, dem heutigen Bahnhof Friedrichstrasse, vor dem Bombenhagel retten konnten; bis zu 2.500 Menschen finden darin Platz. Nach dem Ende des Zweiten Weltkrieges wurde der Bunker sehr unterschiedlich genutzt: Zuerst diente er als Kriegsgefängnis der Roten Armee, danach als Lager für Textilien und anschließend für Südfrüchte, was ihm den Namen „Bananenbunker“ einbrachte. Nach dem Mauerfall ging das Gebäude in den Besitz des Bundes über und die Kultur Berlins zog ein: Erst in Form eines Techno-Clubs, in welchem auch Theaterstücke aufgeführt wurden, bis der Bund das Gebäude vorerst schloss. Der Werbeagentur-Inhaber Christian Boros erwarb zusammen mit seiner Frau Karen Boros den Bunker schließlich und baute ihn fünf Jahre lang um: Seit 2008 werden die Kunstwerke aus Boros’ privater Kunstsammlung präsentiert. ...
To prepare for an impending event of unknown temporal distribution, humans internally increase the perceived probability of event onset as time elapses. This effect is termed the hazard rate of events. We tested how the neural encoding of hazard rate changes by providing human participants with prior information on temporal event probability. We recorded behavioral and electroencephalographic (EEG) data while participants listened to continuously repeating five-tone sequences, composed of four standard tones followed by a non-target deviant tone, delivered at slow (1.6 Hz) or fast (4 Hz) rates. The task was to detect a rare target tone, which equiprobably appeared at either position two, three or four of the repeating sequence. In this design, potential target position acts as a proxy for elapsed time. For participants uninformed about the target’s distribution, elapsed time to uncertain target onset increased response speed, displaying a significant hazard rate effect at both slow and fast stimulus rates. However, only in fast sequences did prior information about the target’s temporal distribution interact with elapsed time, suppressing the hazard rate. Importantly, in the fast, uninformed condition pre-stimulus power synchronization in the beta band (Beta 1, 15–19 Hz) predicted the hazard rate of response times. Prior information suppressed pre-stimulus power synchronization in the same band, while still significantly predicting response times. We conclude that Beta 1 power does not simply encode the hazard rate, but—more generally—internal estimates of temporal event probability based upon contextual information.
Sulforaphane is a natural substance found in cruciferous vegetables such as broccoli or cabbage. There are promising results for a number of tumor entities regarding the potential anti-carcinogenic effects of sulforaphane. The experiments designed for this study were performed on prostate carcinoma cells. The aim was to investigate the influence of sulforaphane on the growth behaviour of prostate cancer cells.
Designed as an in-vitro-model, prostate carcinoma cell lines DU145 and PC3 were used in the study. The experiments can be roughly divided into two categories:
• Regulation of cell growth: After the growth inhibitory effect of sulforaphane has been confirmed (MTT test), the proliferation rate (BrdU assay) and apoptosis rate (apoptosis assay) of the cells were measured under the influence of sulforaphane. Studies on clonogenic growth completed this series of experiments.
• Regulation of the cell cycle: After determining the impact of sulforaphane on the phases of the cell cycle (cell cycle assay), the cell cycle-relevant proteins of the cyclin-CDK-axis, the CDK inhibitors p19 and p27 as well as the acetylated histones aH3 and aH4 were analysed (Western Blot).
An additional MTT test was performed to determine a possible induction of resistance by long-term sulforaphane exposure. In addition, the expression profile of CD44 subtypes v4, v5 and v7 under the influence of sulforaphane has been investigated by FACS analysis.
The growth and proliferation rate as well as the clonogenic growth of the prostate carcinoma cells were shown to be inhibited under the influence of sulforaphane in a concentration-dependent manner. Induction of apoptosis has not occurred. The treatment with sulforaphane resulted in a concentration-dependent G2/M arrest of the cell cycle. The level of expression of cyclins A and B and of CDKs 1 and 2 has increased due to sulforaphane exposure. The level of expression of pCDKs has decreased except for a slight increase in pCDK 2 in the DU145 cell line. The CDK inhibitors p19 and p27 were elevated, except for a reduction of p27 in the PC3 cell line. The level of expression of acetylated histones aH3 and aH4 has increased due to sulforaphane treatment. Indications for induction of resistance by long-term use of sulforaphane were not found. Treatment with sulforaphane resulted in an increased expression level of the CD44 subtypes v4, v5 and v7 in a concentration- and time-dependent manner.
The test results fit into the existing findings. The exact processes and relationships of the modes of action are not yet sufficiently understood. Nevertheless, it can be stated that sulforaphane can trigger anticarcinogenic mechanisms at the molecular level also in prostate cancer. Therefore, sulforaphane could eventually be used in clinical practice, whether prophylactically or therapeutically. Further studies, also in clinical settings on humans, are therefore necessary.
Nukleäre Rezeptoren sind ligandenaktivierte Transkriptionsfaktoren, die das pharmazeutische Interesse als Zielstrukturen für antientzündliche Wirkstoffe und andere Indikationen erwecken. Entzündungen werden durch Noxen physikalischer, chemischer oder mikrobiologischer Art hervorgerufen. Dabei reagiert das geschädigte Gewebe mit zahlreichen Vorgängen, die vaskuläre und zelluläre Reaktionen mit Immunantworten verknüpfen und nach der Wiederherstellung des ursprünglichen Zustands streben. Bei andauernder Wirkung können Entzündungen jedoch in einen schädlichen Prozess umschlagen, sodass in solchen Fällen eine therapeutische Intervention Notwendigkeit erlangt. Ziel dieser Arbeit war es deshalb, neue Liganden nukleärer Rezeptoren als Kandidaten für antientzündliche Wirkstoffe zu identifizieren.
Leber X Rezeptoren (LXRs) sind Zielstrukturen für entzündliche und neurodegenerative Erkrankungen mit antiphlogistischem Potenzial. Zur Identifikation neuer LXR-Liganden wurde eine Datenbank mit zugelassenen Wirkstoffen mithilfe einer selbstorganisierenden Karte (SOM) auf Interaktion mit LXR gescreent. Die Retinoid X Rezeptor (RXR)-Agonisten Alitretinoin (37) und Bexaroten (38) konnten in der anschließenden in vitro Charakterisierung als potente duale LXRalpha/LXRbeta-Partialagonisten mit moderater Aktivierungseffizienz bestätigt werden. Während 37 und 38 synthetische LXR-Vollagonisten partiell antagonisierten, führten sie mit dem endogenen Partialagonisten 22(R)-Hydroxycholesterol (4) zur additiven Aktivierung von LXR. Die Charakterisierung von Alitretinoin (37) und Bexaroten (38) als duale LXR/RXR-Agonisten liefert nicht nur eine weitere Erklärung für in klinischen Studien beobachtete Nebenwirkungen, sondern könnte auch den Startpunkt zur Entwicklung neuer antientzündlicher LXR- und dualer LXR/RXR-Liganden bieten.
Der Peroxisomen Proliferator-aktivierte Rezeptor (PPAR) gamma ist ein nukleärer Rezeptor, der neben der Steigerung der Insulinsensitivität auch antientzündliche Effekte aufweist. Auf Grundlage seiner Y-förmigen und fettsäuremimetischen Struktur konnte das Urikosurikum Lesinurad (47) als PPARgamma-Partialagonist in vitro charakterisiert werden. Im Gegensatz zu PPARgamma-Vollagonisten wie Pioglitazon (31) oder Rosiglitazon (32) induzierte 47 nicht die Differenzierung muriner 3T3-L1 Zellen in reife Adipozyten, aber erhöhte in der humanen Leberzellkarzinomzelllinie HepG2 die Expression von Genen, welche die Insulinsensitivität und den Fettsäureabbau steigern könnten. Folglich erwies sich Lesinurad (47), das bei der Pharmakotherapie von Gicht Anwendung findet, als selektiver PPARgamma-Modulator (sPPARgammaM) ohne adipogene Nebenwirkungen. Insbesondere Patienten mit Komorbiditäten wie Diabetes mellitus Typ 2 oder anderen Erkrankungen des metabolischen Syndroms könnten von einer Behandlung mit 47 profitieren. Inwiefern PPARgamma an der Auflösung von Entzündungen bei Gicht beteiligt ist, bleibt in zukünftigen Studien zu klären.
Synthetische RXR-Agonisten haben ein vielversprechendes Potenzial zur Behandlung entzündlicher neurodegenerativer Erkrankungen, das jedoch von nachteiligen Eigenschaften dieser Rexinoide beeinträchtigt wird. Durch ein pharmakophorbasiertes Screening einer fokussierten Substanzbibliothek aus Fettsäuremimetika konnte ein fortschrittliches RXR-Ligandgerüst identifiziert werden. Eine geeignete Synthesestrategie wurde etabliert und die Leitstrukturen durch systematisches Studium der Struktur-Wirkungsbeziehung (SAR) optimiert. In vitro Experimente wie Reportergenassays und die Quantifizierung der Zielgenexpression bestätigten die RXR-partialagonistische Aktivität der dabei entwickelten nanomolaren Verbindung 89. Mit seiner hohen Selektivität, gesteigerten wässrigen Löslichkeit sowie reduzierter Lipophilie und Toxizität könnte 89 die Probleme bisheriger synthetischer RXR-Agonisten überwinden. Seine Präferenz von RXRgamma hinsichtlich der Aktivierungseffizienz könnte richtungsweisend für die Entwicklung subtypselektiver Liganden sein.
Die nichtalkoholische Steatohepatitis (NASH) ist eine Leberentzündung, die aus einer Steatose hervorgehen kann und deren multifaktorielle Natur eine hohe therapeutische Effizienz erfordert. Diese könnte durch duale Modulation der nukleären Rezeptoren Farnesoid X Rezeptor (FXR) und PPARdelta mit antientzündlichen Eigenschaften und unterschiedlichem Wirkprinzip erreicht werden. Zur Validierung dieses Ansatzes mit synergistischem Potenzial sollten duale PPARdelta/FXR-Agonisten ausgehend von einer in früheren Studien des Arbeitskreises identifizierten Leitstruktur mit moderater Potenz entwickelt werden. Dazu wurde ein fünfstufiges Verfahren zur Synthese von Derivaten der Leitstruktur erarbeitet und die Derivate hinsichtlich ihrer Aktivität auf den Zielstrukturen in vitro evaluiert. In systematischen SAR-Studien wurden dabei Strukturmotive charakterisiert, welche die Wirksamkeit und Maximalaktivierung auf PPARdelta und FXR steigerten. Darüber hinaus konnten Modifikationen identifiziert werden, welche eine Selektivität über PPARalpha und PPARgamma gewährten. Die Kombination dieser vorteilhaften Gruppen und Substituenten könnte neue Wirkstoffkandidaten zur Behandlung von NASH hervorbringen.
Insgesamt wurden in dieser Arbeit zahlreiche Wirkstoffe und Wirkstoffkandidaten erfolgreich als Liganden nukleärer Rezeptoren mit antientzündlichem Potenzial identifiziert. Alitretinoin (37) und Bexaroten (38) können als Leitstruktur zur Entwicklung neuer selektiver LXR- oder dualer LXR/RXR-Agonisten dienen. Die PPARgamma-partialagonistische Aktivität von Lesinurad (47) könnte einen Fortschritt in der Therapie von Gicht mit metabolischen Begleiterkrankungen bewirken. Zudem könnten im Zuge dieser Arbeit synthetisierte Serien von RXR- und dualen PPARdelta/FXR-Partialagonisten neue Therapieoptionen bei neurodegenerativen Erkrankungen oder NASH ermöglichen.
Human readers have the ability to infer knowledge from text, even if that particular information is not explicitly stated. In this thesis, we address the phenomena of text-level implicit information and outline novel automated methods for its recovery.
The main focus of this work is on two types of unexpressed content that arises between sentences (implicit discourse relations) and within sentences (implicit semantic roles).
Traditional approaches mostly rely on costly rich linguistic features, e.g., sentiment or frame-based lexicons, and require heuristics or manual feature engineering.
As an improvement, we propose a collection of generic resource-lean methods, implemented in the form of statistical background knowledge or by means of neural architectures.
Our models are largely language-independent and produce state-of-the-art performance, e.g., in the classification of Chinese implicit discourse relations, or the detection of locally covert predicative arguments in free texts.
In novel experiments, we quantitatively demonstrate that both types of implicit information are mutually dependent insofar as, for instance, some implicit roles directly correlate with implicit discourse relations of similar properties.
We show that implicit information processing further benefits downstream applications and demonstrate its applicability to the higher-level task of narrative story understanding.
In the conclusion of the dissertation, we argue for the need of implicit information processing in order to realize the goal of true natural language understanding.
Die wissenschaftliche Vernetzung, Betreuung und Unterstützung in der Promotionsphase steht im Zentrum dieser Forschungsarbeit, für die eine soziale Netzwerkanalyse (SNA) zur Karriereentwicklung in einem Bildungsforschungsprogramm in Deutschland durchgeführt wurde. Als Ausgangsproblem wird die schwierige Situation der unsicheren beruflichen Perspektiven Promovierter aufgegriffen.
Die Arbeit beschäftigt sich mit der Frage, wie Promovierende sowohl eine hohe fachliche Qualifikation erreichen, die für eine wissenschaftliche Karriere erforderlich ist, als auch eine gute Vernetzung in der wissenschaftlichen Gemeinschaft aufbauen können, um sich Chancen für die nächsten Karriereschritte zu eröffnen. Aus der Perspektive der Promovierten werden Chancen und Risiken der Vernetzung behandelt, um Überlegungen zu förderlichen und hinderlichen Aspekten der Betreuung und Unterstützung anzustellen.
Die Ergebnisse dieser Forschungsarbeit zeigen auf, welche Bedeutung soziale Netzwerke in der Berufsbiografie haben können und wie wissenschaftliches und soziales Kapital für die Karriere genutzt werden kann. Dazu richtet sich die erziehungswissenschaftliche Perspektive auf Prozesse des Wissenserwerbs und gemeinschaftlicher Lernprozesse, die zur Qualifizierung dienen und unterschiedliche Modelle von Betreuung umfassen. Im Verlauf der Promotionsphase und der weiteren wissenschaftlichen Karriere beginnen die Promovierenden auf der Wissensgrundlage ihres Studiums als Neulinge ihre erste umfangreiche empirische Forschungsarbeit. Sie werden durch die Mitarbeit im Projekt und ihre Beteiligung an Aktivitäten an die Arbeitsweisen in der Wissenschaft herangeführt. Von einer solchen eher randständigen Position aus erwerben sie Wissen, lernen hinzu, tauschen sich mit fortgeschrittenen WissenschaftlerInnen aus und sammeln eigene Erfahrungen. Nach einiger Zeit weiterer Qualifizierung und größerer Sichtbarkeit in der wissenschaftlichen Gemeinschaft können sie Positionen näher am Zentrum ihres Forschungsgebiets einnehmen, die auf ihren Kenntnissen und ihrer zunehmenden fachlichen und methodischen Expertise beruhen.
Neue Erkenntnisse über Betreuungsmodelle sind hilfreich, denn die Betreuung orientiert sich mal stark an dem klassischen Lehrer-Schüler-Modell (Individualbetreuung) oder an einer gemeinsamen Betreuung in einer Forschungsgruppe (Gruppenbetreuung). Die Untersuchung der Bedeutung von sozialem Kapital und situiertem Lernen in der Qualifikationsphase dient dazu, die Vernetzung von Promovierten in ihrer späteren akademischen Karriere zu analysieren.
Transposable elements (TEs) are replicating genetic elementst hat comprise up to 50% of mammalian genomes. A specific class of TEs are retrotransposons that proliferate by transcription into a RNA intermediate, followed by genomic reintegration into another locus (so called “copy & paste” mechanism). Due to the lack of removal mechanisms and very rare parallel insertions, the presence of TE insertions at ortholgous genomic loci in multiple taxa provides a virtually homoplasy free phylogenetic marker. So far, developing phylogenetically informative markers from TE insertions has been a tedious work of testing hundreds of putative candidate loci in a trial-and error approach with low success rate. Hence, phylogenetic studies using TE insertions were often limited to a few dozen markers.
Recently, genome sequencing of multiple species using reference-mapping allowed the identification of genome-scale datasets of TE insertions. and made the ad-hoc development of phylogenetic informative markers possible. However, genome scale TE detection methods have rarely been applied to non model organisms in which data availability and quality is comparably limited. In this thesis, I developed the TeddyPi pipeline (TE detection and discovery for phylogenetic inference), a software tool that made it possible to obtain reliable genome-scale TE insertion data from low-coverage genomes. This was achieved by integrating the data from multiple TE and structural variation callers as well as applying a stringent filtering pipeline to exclude low-quality insertion calls. Whole-genome sequencing datasets of bears (Ursidae) and baleen whales (Mysticeti) were used to apply TE based phylogenetic inference and evaluate the method in comparison to sequence-based phylogenomic analyses.
In the bear genomes, TeddyPi identified 150,513 high-quality transposable element (TE) insertions, which allowed me to reconstruct the evolutionary history of bears despite extensive phylogenetic conflict (Lammers et al., 2017). The large number of detected TE insertions made also detailed network analyses possible that visualize the phylogenetic conflict. Experimental polymerase chain reaction (PCR) assays validated up to 93 % of the computationally identified TE loci and demonstrated the high accuracy of the dataset underlying the phylogenetic analyses.
Second, I present the initial genome sequencing of six baleen whales and a detailed investigation of their evolutionary history using TE insertions and established sequence-based phylogenomic methods. The taxon sampling of baleen whales included iconic species like the blue whale (Balaneoptera musculus) or the humpback whale (Megaptera novaengliae) (Árnason et al., 2018). A sequence-based reconstruction of the baleen whale species tree solved the long-debated phylogenetic position of the gray whale (Echrichtius robustus) within rorquals (Balaneopteridae) for the first time with high statistical support. Furthermore, the genome data made it possible to identify large extent of phylogenetic conflict for divergences during the radiation of rorquals that occurred 7-10 million years ago (Ma).
The phylogenomic analyses of 91,589 TE insertions in the whale genomes confirmed the sequence-based topology (Lammers et al., 2019). The quantification of phylogenetic signals obtained from the TE insertions revealed a high degree of discordance for the divergence of the gray whale and rorquals. Despite the large genome-scale dataset, statistical tests showed only marginal support for a bifurcating divergence of gray whales and the rorqual species. The limited statistical support for a strictly bifurcating tree obtained from genome-scale datasets of thousands of markers demonstrates the importance for including phylogenetic networks for displaying evolutionary divergences.
In conclusion, this thesis shows that identification of TE insertions from whole-genome resequencing provides plentiful and accurate phylogenomic markers. For the application in non model organisms, I provide a easy-to-use software to integrate multiple datasets from TE and structural variation callers in order to obtain reliable and ascertainment-bias free datasets. Detecting genome-scale datasets of TE insertions in two case studies demonstrates the applicability of this marker system for phylogenetic reconstruction and inferring phylogenetic conflict.
Nominal modification in language production: Extraposition of prepositional phrases in german
(2019)
In my dissertation, I investigate the phenomenon of extraposition of PP out of NP in German in language production. Four production experiments, using the method of production of memory, and three experiments testing the acceptability of extraposition were conducted. In extraposition, a constituent is realized in a position to the right of what would be considered the canonical position. A special case is extraposition out of a nominal phrase (NP), in which a constituent is moved out of NP to the end of the utterance. The example in (1a) illustrates the canonical version, in which a prepositional phrase (PP) is adjacent to its head noun. In (1b) the PP is extraposed out of NP to the right edge of the sentence.
(1) a. Gestern hat eine Frau mit einer lauten, schrillen Stimme angerufen.
b. Gestern hat eine Frau angerufen mit einer lauten, schrillen Stimme.
There are two main aspects to consider: the length of the extraposed constituent (the PP), and the length of the intervening material. Experiment 1 investigated the influence of constituent length on extraposition. The hypothesis is that longer and more complex constituents are harder to produce and are therefore produced towards the end of the utterance. In the experiment, PPs of three different lengths (2-3, 5-6, 9-11 words) had to be reproduced in either adjacent or extraposed position. As to the length of the intervening material, the hypothesis is that sentences with more intervening material between head noun and extraposed PP will tend to be reproduced with the PP in adjacent position to the head noun. In order to test this hypothesis, the length of the intervening material (1, 2 and 4 words) was manipulated in Experiment 2. The same material was used in an acceptability experiment, using the method of magnitude estimation (Experiment 5).
Previous studies found that extraposition is preferred over verbal material only, thus Experiment 3 investigated the influence of different lengths of purely verbal intervening material. Experiment 4 was concerned with the differences between PP and RC extraposition in production.
Experiment 6 and 7 used Likert scales to assess the acceptability of extraposition. Experiment 6 investigated whether the acceptability of extraposition is influenced by the definiteness status of the NP out of which is extraposed and if a soft constraint for definiteness can be found for PP extraposition in German. Experiment 7 asked if the inner structure of the extraposed constituent (PP only vs. PP+RC) influences its acceptability. An extraposed PP that includes an RC should be "heavier" than a PP without an RC, since the number of phrasal nodes is higher. If indeed heavier constituents are realized at the end of an utterance, the acceptability of an extraposed PP that includes an RC should be higher than that of an extraposed PP without one.
The results of the production experiments show that sentences are mostly reproduced in their original linear sequence, which suggests that extraposed position seems to be just as canonical as adjacent position, especially when extraposition takes place over verbal material only. With regard to constituent length, in extraposed position long PPs are shortened less often, supporting the hypothesis that longer and more complex constituents tend to be produced at the end of the utterance. Recency effects were found for intervening material as participants dropped intervening material rather than change syntactic position of constituents. The length and type of the intervening material is important with respect to how much intervening material is acceptable. Verb clusters were not shortened in sentences with extraposed PPs, however, 1⁄3 of adverbs and 1⁄2 of PP adverbials including a lexical NP were shortened to „verb only“. Extraposed PPs are more often reproduced in adjacent position than adjacent PPs are reproduced in extraposed position. However, the position of RCs is more often changed from adjacent to extraposed than from extraposed to adjacent.
While producing extraposed PPs seems not to be any more difficult than producing adjacent ones, adjacent constituents are consistently rated higher than extraposed constituents in grammaticality judgment tasks. This is in line with findings of Konieczny (2000) on German RC extraposition. The number of phrasal nodes, as suggested by Rickford et al. (1995), did not have an influence on the acceptability of extraposition, while the length of the constituent, measured in words, seems to play a role. Definiteness had no effect on adjacent PPs, but when the PP was extraposed, sentences with an indefinite antecedent were rated higher than sentences with a definite antecedent. This suggests that there is a "soft constraint" for definiteness with regard to PP extraposition out of NP in German.
Buchbesprechungen
(2019)
Es werden folgende Publikation rezensiert: Daniel Barthélémy (Hrsg.): Pl@ntNet; Bunzel-Drüke et al.: Naturnahe Beweidung und Natura 2000; Martina D'Ascola: 50 sagenhafte Naturdenkmale in Hessen; Hessisches Landesamt für Naturschutz, Umwelt und Geologie: Guter Heinrich, Pfingst-Nelke, Färber-Scharte & Co. Hessische Verantwortungsarten – Teil 1.
Die von Wolfgang Ludwig hinterlassene Pflanzensammlung im Marburger Herbar wurde aufbereitet und dokumentiert. Vorgestellt werden Belege aus der in über 70 Jahren (1938–2010) entstandenen Sammlung, die für die hessische Flora bislang nicht bekannt waren sowie Belege zu inzwischen ausgestorbenen, sehr seltenen oder sonstigen bemerkenswerten Arten.
Das Naturschutzgebiet Kühkopf-Knoblochsaue mit 2 400 ha überflutbarer Aue eignet sich in dem potenziellen Wildreben-Verbreitungsgebiet in Deutschland (Oberrheingebiet zwischen Freiburg und Wiesbaden) aktuell bei weitem am besten zum Wiederaufbau überlebensfähiger, ausreichend heterozygoter Wildrebenbestände. Nach einer ersten Wiederansiedlung 2013 mit 65 Genotypen und 121 ausgebrachten wurzelnackten Pflanzen mit Draht-Verbissschutz wurden 2016 in einer zweiten Wiederansiedlungsmaßnahme 551 Wilde Weinreben (78 Genotypen) an 12 Standorten gepflanzt. Es handelte sich hierbei um zweijährige Topfpflanzen, die ohne Verbissschutz gepflanzt wurden. Ein Jahr nach der Pflanzung war eine durchschnittliche Überlebensrate von 69 % zu konstatieren. Die Überlebensraten variieren an den Standorten zwischen 55 und 87 %. 75 von Wildschweinen herausgewühlte Wilde Weinreben wurden wieder eingepflanzt; die Überlebensrate kann somit noch über 69 % steigen.
Bei einer Prüfung von 153 Gewässern in Frankfurt am Main wurden neben den heimischen Typha-Arten Typha angustifolia und T. latifolia Verwilderungen von Typha shuttleworthii und Pflanzungen von Typha laxmannii gefunden. Auch Typha ×glauca die Hybride zwischen Typha angustifolia und T. latifolia wurde mehrfach gefunden.
Im Rahmen der Kartierung der Gefäßpflanzenflora des Vor-, Hochund kammnahen Hintertaunus wurde im Jahre 2004 ein großer Bestand des für Deutschland bislang selten erwähnten Doronicum ×willdenowii entdeckt. Da sich die Art bis heute nicht nur gehalten, sondern vermehrt hat, besteht offensichtlich ein Trend zur lokalen Einbürgerung.
Im Jahr 2008 wurden im Hochtaunus zwei Vorkommen der für diesen Bereich in der Literatur bisher nicht erwähnten Süßdolde (Myrrhis odorata) entdeckt. Beide haben sich bis heute (2017) in dicht geschlossenen, einmal im Jahr gemähten Pflanzenbeständen gehalten. Die Art besitzt also offensichtlich das Potential zur Einbürgerung, wobei man angesichts der relativ geringen Bestandesgröße noch nicht von einem gesicherten Trend zur Einbürgerung sprechen darf. Beide Pflanzenbestände sind saumartig ausgebildet, wobei der Aspekt auch von typischen Saumarten bestimmt wird. Der für Saumgesellschaften auffallend hohe Anteil an Wiesenarten dürfte darauf zurückzuführen sein, dass beide Säume einmal im Jahr gemäht werden.
Um dem neuen Forschungsstand zu Luthers geistlichem Mentor im Augustinerorden endlich zum Durchbruch zu verhelfen, edieren Dohna und Wetzel u. a. Akten aus dem Häresie-Verfahren des Erzbischofs von Salzburg gegen den Augustiner Agricola. Staupitz, der ein Gutachten lieferte, hat sich keineswegs von der lutherischen Bewegung distanziert. Er blieb seiner frühreformatorischen Theologie treu und vermied eine Verurteilung. Agricola musste keineswegs fliehen, er wurde freigelassen. Während andernorts schon Scheiterhaufen brannten, hatten Reformkatholiken hier noch Platz in der abendländischen Kirche.
SAFE Newsletter : 2019, Q3
(2019)
Die Lebensfunktion der Zelle beruht unter anderem auf der Funktion und Wechselwirkung der Nukleinsäuren DNA (2’-Desoxyribonukleinsäure) und RNA (Ribonukleinsäure). Mit Hilfe von PDS (engl. ’pulsed dipolare spectroscopy’)-Techniken, basierend auf der EPR (engl. ’electron paramagnetic resonance’)-Spektroskopie, können Abstände in einem Bereich von 2-10 nm zwischen zwei markierten Positionen einer Nukleinsäure bestimmt werden. Daneben kann mit der Abstandsverteilung auf die Flexibilität des Moleküls geschlossen werden. Durch PDS-Messungen eröffnet sich die Möglichkeit, Bewegungen und Zustandsänderungen zu untersuchen. Die Messungen beruhen auf der dipolaren Kopplung von Radikalen (Spinlabel). Da die gemessenen dipolaren Kopplungen eine anisotrope Wechselwirkung sind, können an starren Systemen neben den Abstandsinformationen auch die Orientierungen der beiden Spinlabel zueinander bestimmt werden. Diese zusätzliche Information ermöglicht es, mittels orientierungsselektiver PDS-Messungen noch genauer die Geometrie und Flexibilität des Systems zu untersuchen. Klassischerweise werden alle Messungen mit der Doppelfrequenztechnik PELDOR (engl. ’pulsed electron-electron double resonance’) durchgeführt. Einzelfrequenzmethoden basieren dagegen auf Breitbandanregung, die mit den technischen Gegebenheiten l nge nicht möglich war. Eine solche Sequenz ist 2D-SIFTER.ImmRahmen dieser Arbeit von PELDOR ausgehende, weiterentwickelte Simulationsprozedur etabliert. Eine große Herausforderung ist die eindeutige Interpretation der sensitiven orientierungsselektiven PELDOR-Messungen. Sie mittels MD (Moleküldynamik)-Simulationen zu beschreiben war bisher nur qualitativ möglich. Allerdings wurden mehrere neue Kraftfelder publiziert. Mit einem quantitativen Vergleich mit orientierungsselektiven PELDOR-Daten kann sichergestellt werden, dass die Flexibilität des Systems durch Kraftfelder richtig beschrieben ist. PELDOR-Zeitspuren, gemessen bei Raumtemperatur und 50 K, unterscheiden sich besonders in ihrer Dämpfung. Der physikalische Unterschied beider Messungen konnte durch MD-Simulationen qualitativ nachvollzogen worden. Eine Schwierigkeit für speziell orientierungsselektive PELDOR-Messungen ist die aufwendige Synthese von mit dem starren Ç-Label markierten Nukleinsäuren. Als Alternative wurde in der Sigurdsson-Gruppe das halbstarre IMU-Label entwickelt. Die Analyse der orientierungsselektiven Daten ergab ein klares Bild der Dynamik dieses Labels. Ein weiterer interessanter Spinlabel ist der `G. Dieser Label ist nicht kovalent gebunden, sondern interkaliert in eine Stelle der Nukleinsäure, in der eine Guanin- Base fehlt. MD-Simulationen im quantitativen Vergleich mit orientierungsselektiven PELDOR-Messungen an verschiedenen Magnetfeldern haben eine hohe Übereinstimmung. Dabei konnte gezeigt werden, dass der Label, interkaliert in eine dsDNA, flippen kann, was zu einer Ausmittelung der Anisotropie führt, allerdings zu keiner Verbreiterung der Abstandsverteilung. Dagegen wird in der dsRNA dieses Flippen um die Einfachbindung sterisch gehindert, so dass neben dem Abstand auch die Orientierung des Labels bestimmt werden kann. Kurze dsRNA-Bausteine tendieren dazu, Oligomere zu bilden, was zu Multispineffekten führte. Zusätzlich beeinflusst diese Aggregation die Dynamik der einzelnen RNAs. Daher musste dieses ’end-to-end’-Stacking verhindert werden. Eine Nukleobasean einem Ende der dsRNA führt zu einer Dimerisierung, während eine Nukleobase an beiden Seiten dieses Stacking vollständig verhindert. Messungen mit unterschiedlichen Salzkonzentrationen konnten zusätzlich zeigen, dass die Interaktion zweier dsRNAs bei höheren Salzkonzentrationen zunimmt.
The main contribution of the thesis is in helping to understand which software system parameters mostly affect the performance of Big Data Platforms under realistic workloads. In detail, the main research contributions of the thesis are:
1. Definition of the new concept of heterogeneity for Big Data Architectures (Chapter 2);
2. Investigation of the performance of Big Data systems (e.g. Hadoop) in virtualized environments (Section 3.1);
3. Investigation of the performance of NoSQL databases versus Hadoop distributions (Section 3.2);
4. Execution and evaluation of the TPCx-HS benchmark (Section 3.3);
5. Evaluation and comparison of Hive and Spark SQL engines using benchmark queries (Section 3.4);
6. Evaluation of the impact of compression techniques on SQL-on-Hadoop engine performance (Section 3.5);
7. Extensions of the standardized Big Data benchmark BigBench (TPCx-BB)(Section 4.1 and 4.3);
8. Definition of a new benchmark, called ABench (Big Data Architecture Stack Benchmark), that takes into account the heterogeneity of Big Data architectures (Section 4.5).
The thesis is an attempt to re-define system benchmarking taking into account the new requirements posed by the Big Data applications. With the explosion of Artificial Intelligence (AI) and new hardware computing power, this is a first step towards a more holistic approach to benchmarking.
The stimulation of the AMP-activated kinase (AMPK) by 5-amino-1-β-D-ribofuranosyl-imidazole-4-carboxamide (AICAR) has been associated with antihyperalgesia and the inhibition of nociceptive signaling in the spinal cord in models of paw inflammation. The attenuated nociception comes along with a strongly reduced paw edema, indicating that peripheral antiinflammatory mechanisms contribute to antinociception. In this study, we investigated the impact of AICAR on the immune cell composition in inflamed paws, as well as the regulation of inflammatory and resolving markers in macrophages. By using fluorescence-activated cell sorting (FACS) analysis and immunofluorescence, we found a significantly increased fraction of proresolving M2 macrophages and anti-inflammatory interleukin (IL)-10 in inflamed tissue, while M1 macrophages and proinflammatory cytokines such as IL-1 were decreased by AICAR in wild type mice. In AMPKα2 knock-out mice, the M2 polarization of macrophages in the paw was missing. The results were supported by experiments in primary macrophage cultures which also showed a shift to a proresolving phenotype with decreased levels of proinflammatory mediators and increased levels of antiinflammatory mediators. However, in the cell cultures, we did not observe differences between the AMPKα2+/+ and −/− cells, thus indicating that the AICAR-induced effects are at least partially AMPK-independent. In summary, our results indicate that AICAR has potent antiinflammatory and proresolving properties in inflammation which are contributing to a reduction of inflammatory edema and antinociception.
In global hydrological models, groundwater (GW) is typically represented by a bucket-like linear groundwater reservoir. Reservoir models, however, (1) can only simulate GW discharge to surface water (SW) bodies but not recharge from SW to GW, (2) provide no information on the location of the GW table, and (3) assume that there is no GW flow among grid cells. This may lead, for example, to an underestimation of groundwater resources in semiarid areas where GW is often replenished by SW or to an underestimation of evapotranspiration where the GW table is close to the land surface. To overcome these limitations, it is necessary to replace the reservoir model in global hydrological models with a hydraulic head gradient-based GW flow model.
We present G3M, a new global gradient-based GW model with a spatial resolution of 5′ (arcminutes), which is to be integrated into the 0.5∘ WaterGAP Global Hydrology Model (WGHM). The newly developed model framework enables in-memory coupling to WGHM while keeping overall runtime relatively low, which allows sensitivity analyses, calibration, and data assimilation. This paper presents the G3M concept and model design decisions that are specific to the large grid size required for a global-scale model. Model results under steady-state naturalized conditions, i.e., neglecting GW abstractions, are shown. Simulated hydraulic heads show better agreement to observations around the world compared to the model output of de Graaf et al. (2015). Locations of simulated SW recharge to GW are found, as is expected, in dry and mountainous regions but areal extent of SW recharge may be underestimated. Globally, GW discharge to rivers is by far the dominant flow component such that lateral GW flows only become a large fraction of total diffuse and focused recharge in the case of losing rivers, some mountainous areas, and some areas with very low GW recharge. A strong sensitivity of simulated hydraulic heads to the spatial resolution of the model and the related choice of the water table elevation of surface water bodies was found. We suggest to investigate how global-scale groundwater modeling at 5′ spatial resolution can benefit from more highly resolved land surface elevation data.
The haloarchaeon Haloferax volcanii contains nearly 2800 small non-coding RNAs (sRNAs). One intergenic sRNA, sRNA132, was chosen for a detailed characterization. A deletion mutant had a growth defect and thus underscored the importance of sRNA132. A microarray analysis identified the transcript of an operon for a phosphate-specific ABC transporter as a putative target of sRNA132. Both the sRNA132 and the operon transcript accumulated under low phosphate concentrations, indicating a positive regulatory role of sRNA132. A kinetic analysis revealed that sRNA132 is essential shortly after the onset of phosphate starvation, while other regulatory processes take over after several hours. Comparison of the transcriptomes of wild-type and the sRNA132 gene deletion mutant 30 min after the onset of phosphate starvation revealed that sRNA132 controls a regulon of about 40 genes. Remarkably, the regulon included a second operon for a phosphate-specific ABC transporter, which also depended on sRNA132 for rapid induction in the absence of phosphate. Competitive growth experiments of the wild-type and ABC transporter operon deletion mutants underscored the importance of both transporters for growth at low phosphate concentrations. Northern blot analyses of four additional members of the sRNA132 regulon verified that all four transcripts depended on sRNA132 for rapid regulation after the onset of phosphate starvation. Importantly, this is the first example for the transient importance of a sRNA for any archaeal and bacterial species. In addition, this study unraveled the first sRNA regulon for haloarchaea.
"We have always been living in bubbles" The opportunities and risks in the digitalisation of media
(2019)
The digitalisation of communication started as early as the 1980s. With the rise of the internet in the mid-90s the digitalisation process intensified; then it took on another dimension with the spread of social media and smartphones in the mid noughties. These new technologies are providing new possibilities that are unveiling, or rather, strengthening societal trends. What’s more, traditional forms of organisation are also being transformed at breakneck speed. This publication provides an overview of both developments: On the one hand we have societal developments such as the blurring of boundaries between real and digital worlds, constant connectivity, fake news, and social media outrage. On the other, we have the effects on traditional media, the workplace, schools, non-governmental organisations and sports. ...
Der menschliche Knochen besitzt, als Folge einer Verletzung oder eines chirurgischen Eingriffs, eine große Fähigkeit zur Reparatur und Regeneration. Die Knochenheilung beinhaltet ein komplexes Zusammenspiel von Zellen, Wachstumsfaktoren, Zytokinen sowie der extrazellulären Matrix (Hoerth et al. 2014). Nichtsdestotrotz führt ein Knochenbruch zu einer dramatischen Veränderung der mechanischen Belastbarkeit an der Verletzungsstelle. Der Abstand zwischen den beiden Frakturenden bildet einen entscheidenden Faktor in der Knochenheilung. Hier wird zwischen der primären, der osteonalen Knochenheilung und der sekundären, der kallusformierenden Knochenheilung unterschieden. Umso größer der Frakturspalt ist, desto größer wird die Instabilität, die Heilungsverzögerung und damit auch die Gefahr einer Pseudoarthrose (Hoerth et al., 2014; Marsell et Einhorn, 2011).
Große diaphysale Defekte werden meistens durch Traumata, Infektionen oder Tumore bedingt. Sie werden als critical size defects (CSD) bezeichnet, wenn eine chirurgische Intervention zur Heilung notwendig ist (Rosset et al., 2014). Langstreckige Knochendefekte stellen immer noch eine sehr große Herausforderung in der rekonstruktiven Chirurgie dar. Deswegen ist die Untersuchung und Weiterentwicklung von implantierbaren biomedizinischen Materialien bei der Behandlung von CSD eine wichtige Aufgabe.
Im Augenblick ist die häufigste Behandlungsmethode großer diaphysaler Defekte die Autologe Spongiosaplastik (ASP) und wird als Goldstandart der Therapie bezeichnet. Jedoch stehen die autologen Knochenmaterialien nur begrenzt zur Verfügung und verursachen viele Entnahmemorbiditäten. Darüber hinaus gibt es allogene, xenogene und synthetische Knochentransplantate. Dennoch ist noch keine der Therapiemöglichkeiten so ausgereift, dass die ASP dadurch ersetzt werden könnte. Die allogenen und xenogenen Materialien sind von der Menge unbegrenzt, besitzen aber eine niedrigere Biokompatibilität, höhere Infektionsgefahr und schlechtere Ergebnisse in der Langzeitwirkung (Wang et al., 2014).
Ein weiterer Nachteil gegenüber der ASP besteht darin, dass die synthetischen Knochenersatzmaterialien keine osteoinduktiven und osteogenen Eingenschaften besitzen. Eine Möglichkeit diese Qualitäten zu erhalten ist, sie mit Zellsuspensionen, wie z.B. bone marrow mononuclear cells (BMC), zu kombinieren und somit zu versuchen ein ausgereiftes Therapiekonzept zu entwickeln.
Zugleich beschreibt Masquelet et al. (2000) eine neue Technik, ein zweistufiges Verfahren zur Rekonstruktion von Knochendefekten. Es wird eine biologisch aktive Membran induziert, welche verschiedene Wachstumsfaktoren (wie z.B. VEGF, TGF beta1, BMP-2) sezerniert, die osteoinduktiv wirksam sind. Mit diesem operativen Verfahren wurden bereits gute klinische Ergebnisse bei Knochendefekten nach Tumorresektionen und Traumata erzielt.
Das Ziel dieser Studie ist es einen anorganischen Knochenersatzstoff von Heraeus Herafill unter Verwendung der induzierten Membrantechnik nach Masquelet am Rattenfemur zu testen. Die Forschung erfolgt dabei unter der Hypothese, dass die Korngröße des Knochenersatzmaterials Herafill in Kombination mit BMC-Besiedelung Einfluss auf die Heilung eines kritischen Knochendefekts hat.
Cytokine-induced killer (CIK) cells are an immunotherapeutic approach to combat relapse following allogeneic hematopoietic stem cell transplantation (HSCT) in acute leukemia or myelodysplastic syndrome (MDS) patients. Prompt and sequential administration of escalating cell doses improves the efficacy of CIK cell therapy without exacerbating graft vs. host disease (GVHD). This study addresses manufacturing-related issues and aimed to develop a time-, personal- and cost-saving good manufacturing process (GMP)-compliant protocol for the generation of ready-for-use therapeutic CIK cell doses starting from one unstimulated donor-derived peripheral blood (PB) or leukocytapheresis (LP) products. Culture medium with or without the addition of either AB serum, fresh frozen plasma (FFP) or platelet lysate (PL) was used for culture. Fresh and cryopreserved CIK cells were compared regarding expansion rate, viability, phenotype, and ability to inhibit leukemia growth. Cell numbers increased by a median factor of 10-fold in the presence of FFP, PL, or AB serum, whereas cultivation in FFP/PL-free or AB serum-free medium failed to promote adequate CIK cell proliferation (p < 0.01) needed to provide clinical doses of 1 × 106 T cells/kG, 5 × 106 T cells/kG, 1 × 107 T cells/kG, and 1 × 108 T cells/kG recipient body weight. CIK cells consisting of T cells, T- natural killer (T-NK) cells and a minor fraction of NK cells were not significantly modified by different medium supplements. Moreover, neither cytotoxic potential against leukemic THP-1 cells nor cell activation shown by CD25 expression were significantly influenced. Moreover, overnight and long-term cryopreservation had no significant effect on the composition of CIK cells, their phenotype or cytotoxic potential. A viability of almost 93% (range: 89–96) and 89.3% (range: 84–94) was obtained after freeze-thawing procedure and long-term storage, respectively, whereas viability was 96% (range: 90-97) in fresh CIK cells. Altogether, GMP-complaint CIK cell generation from an unstimulated donor-derived PB or LP products was feasible. Introducing FFP, which is easily accessible, into CIK cell cultures was time- and cost-saving without loss of viability and potency in a 10-12 day batch culture. The feasibility of cryopreservation enabled storage and delivery of sequential highly effective ready-for-use CIK cell doses and therefore reduced the number of manufacturing cycles.
Inhibition is a central component of human behavior. It enables flexible and adaptive behavior by suppressing prepotent motor responses. In former studies, it has been shown that sport athletes acting in dynamic environments exhibit superior motor inhibitory control based on sensory stimuli. So far, existing studies have corroborated this in manual motor response settings only. Therefore, this study addresses the effector specificity of the inhibition benefit in elite athletes compared to physically active controls. A sport-unspecific stop-signal task has been adapted for hand as well as feet usage and 30 elite handball players as well as 30 controls were tested. A repeated-measures ANOVA with the two factors “effector” (hands, feet) and “group” (expert, recreational athletes) was conducted. Our results suggest no group differences in two-choice response times, but a convincing superiority of handball players in inhibitory control (i.e., shorter stop-signal reaction times), predominantly when responding with their hands, with weaker differential effects when responding with their feet. This suggests that motor inhibition might be a comprehensive performance characteristic of sport athletes acting in dynamic environments, detectable predominantly in eye-hand coordination tasks.
Myeloid-specific deletion of the AMPK2 subunit alters monocyte protein expression and atherogenesis
(2019)
The AMP-activated protein kinase (AMPK) is an energy sensing kinase that is activated by a drop in cellular ATP levels. Although several studies have addressed the role of the AMPKα1 subunit in monocytes and macrophages, little is known about the α2 subunit. The aim of this study was to assess the consequences of AMPKα2 deletion on protein expression in monocytes/macrophages, as well as on atherogenesis. A proteomics approach was applied to bone marrow derived monocytes from wild-type mice versus mice specifically lacking AMPKα2 in myeloid cells (AMPKα2∆MC mice). This revealed differentially expressed proteins, including methyltransferases. Indeed, AMPKα2 deletion in macrophages increased the ratio of S-adenosyl methionine to S-adenosyl homocysteine and increased global DNA cytosine methylation. Also, methylation of the vascular endothelial growth factor and matrix metalloproteinase-9 (MMP9) genes was increased in macrophages from AMPKα2∆MC mice, and correlated with their decreased expression. To link these findings with an in vivo phenotype, AMPKα2∆MC mice were crossed onto the ApoE-/- background and fed a western diet. ApoExAMPKα2∆MC mice developed smaller atherosclerotic plaques than their ApoExα2fl/fl littermates, that contained fewer macrophages and less MMP9 than plaques from ApoExα2fl/fl littermates. These results indicate that the AMPKα2 subunit in myeloid cells influences DNA methylation and thus protein expression and contributes to the development of atherosclerotic plaques.
Blunt thoracic trauma (TxT) deteriorates clinical post-injury outcomes. Ongoing inflammatory changes promote the development of post-traumatic complications, frequently causing Acute Lung Injury (ALI). Club Cell Protein (CC)16, a pulmonary anti-inflammatory protein, correlates with lung damage following TxT. Whether CC16-neutralization influences the inflammatory course during ALI is elusive. Ninety-six male CL57BL/6N mice underwent a double hit model of TxT and cecal ligation puncture (CLP, 24 h post-TxT). Shams underwent surgical procedures. CC16 was neutralized by the intratracheal application of an anti-CC16-antibody, either after TxT (early) or following CLP (late). Euthanasia was performed at 6 or 24 h post-CLP. Systemic and pulmonary levels of IL-6, IL-1β, and CXCL5 were determined, the neutrophils were quantified in the bronchoalveolar lavage fluid, and histomorphological lung damage was assessed. ALI induced a significant systemic IL-6 increase among all groups, while the local inflammatory response was most prominent after 24 h in the double-hit groups as compared to the shams. Significantly increased neutrophilic infiltration upon double hit was paralleled with the enhanced lung damage in all groups as compared to the sham, after 6 and 24 h. Neutralization of CC16 did not change the systemic inflammation. However, early CC16-neutralization increased the neutrophilic infiltration and lung injury at 6 h post-CLP, while 24 h later, the lung injury was reduced. Late CC16-neutralization increased neutrophilic infiltration, 24 h post-CLP, and was concurrent with an enhanced lung injury. The data confirmed the anti-inflammatory potential of endogenous CC16 in the murine double-hit model of ALI.
Latitudinal and bathymetrical species richness patterns in the NW Pacific and adjacent Arctic Ocean
(2019)
Global scale analyses have recently revealed that the latitudinal gradient in marine species richness is bimodal, peaking at low-mid latitudes but with a dip at the equator; and that marine species richness decreases with depth in many taxa. However, these overall and independently studied patterns may conceal regional differences that help support or qualify the causes in these gradients. Here, we analysed both latitudinal and depth gradients of species richness in the NW Pacific and its adjacent Arctic Ocean. We analysed 324,916 distribution records of 17,414 species from 0 to 10,900 m depth, latitude 0 to 90°N, and longitude 100 to 180°N. Species richness per c. 50 000 km2 hexagonal cells was calculated as alpha (local average), gamma (regional total) and ES50 (estimated species for 50 records) per latitudinal band and depth interval. We found that average ES50 and gamma species richness decreased per 5° latitudinal bands and 100 m depth intervals. However, average ES50 per hexagon showed that the highest species richness peaked around depth 2,000 m where the highest total number of species recorded. Most (83%) species occurred in shallow depths (0 to 500 m). The area around Bohol Island in the Philippines had the highest alpha species richness (more than 8,000 species per 50,000 km2). Both alpha and gamma diversity trends increased from the equator to latitude 10°N, then further decreased, but reached another peak at higher latitudes. The latitudes 60–70°N had the lowest gamma and alpha diversity where there is almost no ocean in our study area. Model selection on Generalized Additive Models (GAMs) showed that the combined effects of all environmental predictors produced the best model driving species richness in both shallow and deep sea. The results thus support recent hypotheses that biodiversity, while highest in the tropics and coastal depths, is decreasing at the equator and decreases with depth below ~2000 m. While we do find the declines of species richness with latitude and depth that reflect temperature gradients, local scale richness proved poorly correlated with many environmental variables. This demonstrates that while regional scale patterns in species richness may be related to temperature, that local scale richness depends on a greater variety of variables.
Feministische Erinnerungskulturen : 100 Jahre Frauenstimmrecht. 50 Jahre Autonome Frauenbewegung
(2019)
Completing banking union
(2019)
To complete banking union, there should be a single European deposit insurance scheme (EDIS) alongside the single supervisor and the single resolution authority. This would ensure uniformity across the Eurozone and facilitate the removal of barriers to the mobility of liquidity and capital within the single market. That in turn would promote efficiency in the banking sector and in the economy at large — just at the time that the EU needs to boost growth in order to remain competitive with the US and China.
The EDIS promise to promptly reimburse insured deposits at a failed bank in the Eurozone should be unconditional. But who will stand behind that commitment? Who is the “E” in EDIS? Is its promise credible, even in a crisis? If a deposit guarantee scheme fails to deliver what people expect, panic would very likely erupt. Instead of strengthening financial stability, deposit insurance could destroy it.
Yet this is the risk that current proposals pose. They create the impression that there will be a single deposit guarantee scheme. There will not. Instead, there will be a complex set of liquidity and reinsurance arrangements among Member State schemes.
These defects need to be remedied. To do so, we propose creating a European Deposit Insurance Corporation (EDIC) alongside national schemes. For banks that meet EDIC’s strict entry criteria and decide to become members, EDIC will promise to reimburse promptly — in the event the member bank fails — 100 cents on the euro in euro for each euro of insured deposits, regardless of the Eurozone Member State in which the bank is headquartered.
In effect, the single deposit guarantee scheme would be created via migration to EDIC rather than mutualisation of existing schemes. This would increase the mobility of capital and liquidity and lead to a convergence of interest rates across the Eurozone. That in turn will improve the effectiveness of monetary policy, foster integration and promote growth.
This thesis investigates the acquisition of compositional and lexical semantic properties of adjectives in German-speaking children between the age of two and five years.
According to formal semantic approaches, there are intersective and non-intersective adjectives, subsective and non-subsective adjectives as well as gradable and non-gradable adjectives. These properties concern the compositional mechanisms involved in nominal modification, i.e., the combination of adjectives and nouns. In addition, adjectives differ regarding lexical semantic properties that contribute to the adjectives' meaning. Differences in the adjectives' scale structure have led to the theoretical assumption that gradable adjectives should be distinguished into relative and absolute gradable adjectives. In addition, meaning components such as multidimensionality or subjectivity have led to the distinction between dimensional and evaluative gradable adjectives. These properties have been mostly investigated independently of each other in both theory and acquisition research. I suggest a classification system for adjectives that combines different semantic properties. This system results in six adjective classes constituting a Semantic Complexity Hierarchy. Assuming that these adjective classes differ in semantic complexity, I propose an operationalization of semantic complexity that takes into account the adjectives' length of description, their type complexity, and lexical properties that contribute to the adjectives' meaning.
Regarding the question of how monolingual German-speaking children acquire the semantics of adjectives, I hypothesize that the order of acquisition of adjectives is determined by their semantic complexity. This hypothesis is tested in a spontaneous speech study and a comprehension experiment.
The spontaneous speech study is a longitudinal investigation of the production of adjectives from 2;00 to 2;11 years based on transcripts from a dense data corpus. The results provide evidence that the mean age of acquisition for the adjective classes in the Semantic Complexity Hierarchy follows the order predicted by semantic complexity. The same order was observed for the age at which the number of types for each class increased most. A preliminary analysis of the input indicates that the frequency of parental adjective use is related to the order of acquisition, but it is unlikely that frequency determines the order completely.
The comprehension experiment focuses on two specific adjective classes. I examine children's and adults' interpretation of relative (big, small) and absolute (clean, dirty) gradable dimensional adjectives with a picture-choice task. These two classes are of the same semantic complexity because they are both gradable, but they have different scale structures. As a result, they must be interpreted differently due to lexical semantic properties. I investigate whether children calculate different standards of comparison for relative and absolute gradable adjectives and whether they distinguish between relative and absolute gradable adjectives regarding the relevance of the explicit comparison class. The results indicate that as of age 3, children distinguish between relative and absolute gradable adjectives with regard to the standard of comparison. However, with respect to the relevance of the comparison class, for 3-year-old children, unlike for 4- and 5-year-olds, changes in the noun, i.e., in the explicit comparison class, led to non-adult-like responses regarding both relative and absolute gradable adjectives.
On the basis of the empirical findings, I propose an acquisition path stating that children enter the acquisition process with inherent linguistic knowledge, the Semantic Complexity Hierarchy, and cognitive abilities to categorize their environment. I suggest that initially, children apply the least complex interpretation available in the Semantic Complexity Hierarchy to all adjectives: all adjectives are interpreted as properties of individuals that are not gradable. To access other levels of the Semantic Complexity Hierarchy and to establish more complex adjective classes, positive evidence from the input and conceptual properties of adjectives, e.g., COLOR, MENTAL STATE, PHYSICAL PROPERTY etc., can operate as triggers.
This study investigates macrostructure in elicited narratives of 69 monolingual German-, Russian- and Swedish-speaking adults. Using the LITMUS-MAIN (Multilingual Assessment Instrument for Narratives), and its Baby Goats and Baby Birds stories, story structure and story complexity, concerning episodic organization, were examined across the 3 languages. As theoretical underpinnings, a multidimensional model of macrostructure was used. This model includes analyses of story structure (SS), in which a narrative merits a maximum score of 17, based on the occurrence of five types of macrostructural components (Internal states as initiating event and as reaction, Goal, Attempt and Outcome), and of story complexity (SC), which measures combinations of Goals, Attempts and Outcomes within one episode. The highest attainable complexity is the GAO-sequence, when a Goal, Attempt and Outcome are produced within the same episode. The results for SS were similar for German, Russian and Swedish, where adults included 11-12 components per story. A more detailed analysis of the individual components revealed striking similarities across the 3 languages, both for frequently used and seldom occurring components. SC did not differ significantly across languages nor across stories, whilst for SS, a slight difference between the two stories was found. We interpret this finding as story complexity (a qualitative measure of macrostructure) being of a more universal nature. Furthermore, our results indicate that caution is warranted when conclusions about children’s narrative skills are to be drawn on the basis of the MAIN Baby Goats and Baby Birds stories.
For this study one hundred sixty-seven Russian-/Turkish-German preschool children were tested with a battery of language proficiency tests in both languages. On the basis of 1.5 SD below monolingual norm for L2 German and 1.25 SD below bilingual mean for either home language, 9 children at risk of developmental language disorders (DLD) (mean age of 4 years and 5 months) were identified and 16 age-matched TD children were selected out of the cohort. All these children were tested with the LITMUS-MAIN and –SR tests in German. The results across TD and at risk of DLD group were compared. TD clearly outperformed at risk of DLD in SR. In elicited narratives, macrostructure and microstructure were scrutinized across groups. Similar to the previous findings, our results show significant differences between at risk of DLD und TD in the microstructure, e.g. total number of word tokens and verb-based communication units and SR. For the macrostructure, TD outperformed at risk children only for story complexity. The study expands our knowledge on the cut-off criteria for the identification of bilinguals at risk of DLD, scrutinized very early narratives for bilinguals at risk of DLD features and questions the similarity of cognitive skills in TD and at risk of DLD children.
The aim of the present study was to test the influence of picture composition on the narrative complexity of preschool children, and to compare the different procedures of the Cat Story of Hickmann (2002) and the Fox Story of Gülzow & Gagarina (2007) with the Baby Birds and Baby Goats Story of MAIN, by Gagarina et al. (2012). For this purpose, 27 children between the ages of 5;01 and 6;09 were tested with both variants to check whether a macro-structurally controlled picture structure would lead to more complex stories. The results show that narratives with a Goal-Attempt-Outcome structure, i.e. the Baby Birds and Baby Goats Stories, make children with increasing age tell more complex stories by means of a rise in story complexity than the narratives of Hickmann and Gülzow & Gagarina without that structure.
This paper focuses on morphological verb errors in elicited narratives of Russian-German primary school bilinguals. The data was collected from 37 children who were separated into four groups according to the age and language acquisition type (simultaneous and successive). The Multilingual Assessment Instrument for Narratives (MAIN) (Gagarina et al. 2012) was used for data collection. The narratives produced in mode telling after listening to a model story were analysed and morphological verb errors in Russian and German were classified. Therefore, the error classification of Gagarina (2008) for Russian monolingual children was expanded and for the classification of German errors an own classification was suggested. Errors in Russian typically produced by monolinguals and unique bilingual errors as well were documented. The results show that the language of the environment (German) increases with age. Older children make fewer errors than younger ones. Nevertheless, a strong heterogeneity between children within each group can be observed.
This study explores the relation between the development of narrative skills at the macrostructural level and the productive lexical abilities (verbs) of German-Russian children. The narratives are elicited using the Multilingual Assessment Instrument for Narratives (MAIN) and the lexical abilities are assessed using different tests. Twenty-one preschoolers (mean age: 3;9), forty-four 1st graders (mean age: 6;11) and twenty-two 3rd graders (mean age: 9;3) were included in the study. Correlation analyses were performed between verb lexicon and the following macrostructural components: Story Structure, Structural Complexity and Internal State Terms. The analysis also targets cross-language effects. In addition, the production of verbs within the elicited narratives was taken into account. Some positive correlations were found; however, no clear pattern across age groups and languages was observed. It is suggested that cognitive abilities might be a more decisive factor than lexical abilities and/or that the verbs assessed via the vocabulary tests are more specific than the ones required to achieve high scores for macrostructure.
A growing body of evidence shows a positive relation between the language skills of a child and the socio-economic status (SES) of his/her parents. These studies have mainly been conducted in an American English monolingual context. The current paper addresses the question of whether SES has a comparable impact on the simultaneous bilingual language acquisition. In this study, noun and verb test scores of German simultaneous bilingual children with Turkish and Russian as heritage languages are related to the SES of their parents – to verify the existence and the nature of a common pattern. The results do not show common patterns across the two heritage language groups, suggesting the existence of other confounding factors.
The aim of this paper is to analyse the development of narrative macrostructure and the impact of socio-economic status (SES) and home literacy environment (HLE) on the narrative macrostructure of monolingual preschoolers in Germany when retelling and telling a story. The analysis of narrative macrostructure includes three components: story structure, story complexity, and story comprehension. Oral narratives were elicited via Multilingual Assessment Instrument for Narratives (LITMUS-MAIN). 198 monolingual children between age 4;6 and 5;11 participated (M=63 months, SD=5 months). The comparison of narrative macrostructure in three age groups (4;6 to 4;11 years, 5;0 to 5;5 years, 5;6 to 5;11 years) illustrate significant age effects in story structure, story complexity and story comprehension skills. There were weak significant positive correlations of some of these skills with aspects of socio-economic status and home literacy environment, for example between story comprehension skills and the educational background, the frequency and duration of the child’s exposure to books and the number of books in the household.
This article investigates the influence of tense and aspect on the choice of verb forms in texts written by Russian-speaking learners of German. Through eight written narrations, each produced by advanced learners of German with L1-Russian and German native speakers, the use of verb forms and relevant linguistic means (perfect markers, temporal adverbs and temporal clauses) was compared and analysed.
The study shows that even very advanced Russian-speaking learners of German could not meet target language preferences in German. They tended to deploy a different temporal perspective than German native speakers (simple past instead of present tense) and they also showed an overuse of the perfect tense, especially when describing completed actions. These differences compared to the preferences of German native speakers can be explained as transfer effects from the L1 of Russian-speaking learners since – unlike in German – the grammatical aspect in Russian is obligatory and its perfective form offers an effective tool to express completeness.
In this paper, data from a current study on bilingual language acquisition and language promotion of children is presented. 96 narratives from 32 Turkish-German and Russian-German bilingual children were examined with regard to the acquisition of narrative ability in three rounds of tests. The macrostructure of each narrative was evaluated based on the theories of Westby (2005), Stein and Glenn (1977) and Gagarina et al. (2012). In the quantitative analysis, the factor age of onset (AoO) was considered and therefore, two hypotheses were introduced: 1) There is an influence of AoO on the narrative ability of L2 German bilingual children. And 2) The narrative ability will converge over time and after three years there will be no difference between the groups. Neither of those hypotheses could be confirmed by the examined narrative data. Hence, other influences on narrative ability were discussed in the last chapter and prospects for further research were given. In sum, the article shows that more narrative data of these children should be collected to make a comprehensive conclusion about the influence of AoO on narrative ability.
Introduction
(2019)
Browsing the web for school: social inequality in adolescents’ school-related use of the internet
(2019)
This article examines whether social inequality exists in European adolescents’ school-related Internet use regarding consuming (browsing) and productive (uploading/sharing) activities. These school-related activities are contrasted with adolescents’ Internet activities for entertainment purposes. Data from the Programme for International Student Assessment (PISA) 2012 is used for the empirical analyses. Results of partial proportional odds models show that students with higher educated parents and more books at home tend to use the Internet more often for school-related tasks than their less privileged counterparts. This pattern is similar for school-related browsing and sharing Internet activities. In contrast to these findings on school-related Internet activities, a negative association between parental education and books at home is found with adolescents’ frequency of using the Internet for entertainment purposes. The implications of digital inequalities for educational inequalities are discussed.
As a flavor and platform chemical, m-cresol (3-methylphenol) is a valuable industrial compound that currently is mainly synthesized by chemical methods from fossil resources. In this study, we present the first biotechnological de novo production of m-cresol from sugar in complex yeast extract-peptone medium with the yeast Saccharomyces cerevisiae. A heterologous pathway based on the decarboxylation of the polyketide 6-methylsalicylic acid (6-MSA) was introduced into a CEN.PK yeast strain. For synthesis of 6-MSA, expression of different variants of 6-MSA synthases (MSASs) were compared. Overexpression of codon-optimized MSAS from Penicillium patulum together with activating phosphopantetheinyl transferase npgA from Aspergillus nidulans resulted in up to 367 mg/L 6-MSA production. Additional genomic integration of the genes had a strongly promoting effect and 6-MSA titers reached more than 2 g/L. Simultaneous expression of 6-MSA decarboxylase patG from A. clavatus led to the complete conversion of 6-MSA and production of up to 589 mg/L m-cresol. As addition of 450–750 mg/L m-cresol to yeast cultures nearly completely inhibited growth our data suggest that the toxicity of m-cresol might be the limiting factor for higher production titers.
Der Fokus unserer Forschung zum Populismus sollte nicht auf dem harten Kern rechter Parteien liegen, sondern auf jenen, die diese Parteien nur aus Protest wählen oder gar nicht mehr wählen. Wir sollten auch nicht den Fehler machen, die Unterstützung rechter Parteien als irrational und postfaktisch darzustellen. Kern unserer Forschung sollten jene ungleichen wirtschaftlichen und sozialen Strukturen sein, die zum Aufstieg rechter Parteien führen.
Deriving stratospheric age of air spectra using an idealized set of chemically active trace gases
(2019)
Analysis of stratospheric transport from an observational point of view is frequently realized by evaluation of the mean age of air values from long-lived trace gases. However, this provides more insight into general transport strength and less into its mechanism. Deriving complete transit time distributions (age spectra) is desirable, but their deduction from direct measurements is difficult. It is so far primarily based on model work. This paper introduces a modified version of an inverse method to infer age spectra from mixing ratios of short-lived trace gases and investigates its basic principle in an idealized model simulation. For a full description of transport seasonality the method includes an imposed seasonal cycle to gain multimodal spectra. An ECHAM/MESSy Atmospheric Chemistry (EMAC) model simulation is utilized for a general proof of concept of the method and features an idealized dataset of 40 radioactive trace gases with different chemical lifetimes as well as 40 chemically inert pulsed trace gases to calculate pulse age spectra. It is assessed whether the modified inverse method in combination with the seasonal cycle can provide matching age spectra when chemistry is well-known. Annual and seasonal mean inverse spectra are compared to pulse spectra including first and second moments as well as the ratio between them to assess the performance on these timescales. Results indicate that the modified inverse age spectra match the annual and seasonal pulse age spectra well on global scale beyond 1.5 years of mean age of air. The imposed seasonal cycle emerges as a reliable tool to include transport seasonality in the age spectra. Below 1.5 years of mean age of air, tropospheric influence intensifies and breaks the assumption of single entry through the tropical tropopause, leading to inaccurate spectra, in particular in the Northern Hemisphere. The imposed seasonal cycle wrongly prescribes seasonal entry in this lower region and does not lead to a better agreement between inverse and pulse age spectra without further improvement. Tests with a focus on future application to observational data imply that subsets of trace gases with 5 to 10 species are sufficient for deriving well-matching age spectra. These subsets can also compensate for an average uncertainty of up to ±20 % in the knowledge of chemical lifetime if a deviation of circa ±10 % in modal age and amplitude of the resulting spectra is tolerated.
Im Beitrag entwickeln wir einen kritischen Blick auf die Geographie der Wahlergebnisse der Alternative für Deutschland (AfD) bei den Bundestagswahlen 2017. Wir hinterfragen Erklärungsmuster, die in einem starren Stadt-Land-Gegensatz verhaftet bleiben und die komplexe Prozesshaftigkeit der Urbanisierung ignorieren. Dagegen gehen wir mit Henri Lefebvre und Theodor W. Adorno vom Urbanen und Ruralen als sozialen Verhältnissen aus, die sich im übergeordneten Prozess der Urbanisierung in dialektischer Weise scheiden sowie räumlich im Spannungsverhältnis von Zentrum und Peripherie materialisieren. Beispielhaft illustrieren wir diesen Prozess in der Diskussion von drei unterschiedlichen Orten, an denen die AfD bei den Bundestagswahlen besonders erfolgreich war: dem Landkreis Vorpommern-Greifswald als Fall einer umfassenden Peripherisierung, dem Quartier Pforzheim-Haidach als peripheres Zentrum und dem Stadtteil Mannheim-Schönau als zentrale Peripherie. Der Beitrag versucht damit eine räumliche Perspektive auf aktuelle Erfolge des Rechtspopulismus zu entwickeln wie auch Stadt-Land-Verhältnisse konzeptionell neu zu erfassen.
We have encountered two polymorphs of the title compound, C24H16B2OS2, both of which display almost the same unit-cell parameters. Compound (I) crystallizes in the non-centrosymmetric space group P21 with four molecules in the asymmetric unit. These molecules are related by pseudosymmetry. As a result, the space group looks like P21/c, but the structure cannot be refined successfully in that space group. Compound (II) on the other hand crystallizes in the centrosymmetric space group P21/c with only two molecules in the asymmetric unit. The crystals studied for (I) and (II) were both non-merohedral twins.
Understanding new particle formation and growth is important because of the strong impact of these processes on climate and air quality. Measurements to elucidate the main new particle formation mechanisms are essential; however, these mechanisms have to be implemented in models to estimate their impact on the regional and global scale. Parameterizations are computationally cheap ways of implementing nucleation schemes in models but they have their limitations, as they do not necessarily include all relevant parameters. Process models using sophisticated nucleation schemes can be useful for the generation of look-up tables in large scale models or for the analysis of individual new particle formation events. In addition, some other important properties can be derived from a process model that implicitly calculates the evolution of the full aerosol size distribution, e.g., the particle growth rates. Within this study, a model (SANTIAGO, Sulfuric acid Ammonia NucleaTIon And GrOwth model) is constructed that simulates new particle formation starting from the monomer of sulfuric acid up to a particle size of several hundred nanometers. The smallest sulfuric acid clusters containing one to four acid molecules and varying amount of base (ammonia) are allowed to evaporate in the model, whereas growth beyond the pentamer (5 sulfuric acid molecules) is assumed to be entirely collision-controlled. The main goal of the present study is to derive appropriate thermodynamic data needed to calculate the cluster evaporation rates as a function of temperature. These data are derived numerically from CLOUD (Cosmics Leaving OUtdoor Droplets) chamber new particle formation rates for neutral sulfuric acid-water-ammonia nucleation at temperatures between 208 K and 292 K. The numeric methods include an optimization scheme to derive the best estimates for the thermodynamic data (dH and dS) and a Monte Carlo method to derive their probability density functions. The derived data are compared to literature values. Using different data sets for dH and dS in SANTIAGO detailed comparison between model results and measured CLOUD new particle formation rates is discussed.
Understanding new particle formation and growth is important because of the strong impact of these processes on climate and air quality. Measurements to elucidate the main new particle formation mechanisms are essential; however, these mechanisms have to be implemented in models to estimate their impact on the regional and global scale. Parameterizations are computationally cheap ways of implementing nucleation schemes in models, but they have their limitations, as they do not necessarily include all relevant parameters. Process models using sophisticated nucleation schemes can be useful for the generation of look-up tables in large-scale models or for the analysis of individual new particle formation events. In addition, some other important properties can be derived from a process model that implicitly calculates the evolution of the full aerosol size distribution, e.g., the particle growth rates. Within this study, a model (SANTIAGO – Sulfuric acid Ammonia NucleaTIon And GrOwth model) is constructed that simulates new particle formation starting from the monomer of sulfuric acid up to a particle size of several hundred nanometers. The smallest sulfuric acid clusters containing one to four acid molecules and a varying amount of base (ammonia) are allowed to evaporate in the model, whereas growth beyond the pentamer (five sulfuric acid molecules) is assumed to be entirely collision-controlled. The main goal of the present study is to derive appropriate thermodynamic data needed to calculate the cluster evaporation rates as a function of temperature. These data are derived numerically from CLOUD (Cosmics Leaving OUtdoor Droplets) chamber new particle formation rates for neutral sulfuric acid–water–ammonia nucleation at temperatures between 208 and 292 K. The numeric methods include an optimization scheme to derive the best estimates for the thermodynamic data (dH and dS) and a Monte Carlo method to derive their probability density functions. The derived data are compared to literature values. Using different data sets for dH and dS in SANTIAGO detailed comparison between model results and measured CLOUD new particle formation rates is discussed.
Within the world’s oceans, regionally distinct ecological niches develop due to differences in water temperature, nutrients, food availability, predation and light intensity. This results in differences in the vertical dispersion of planktonic foraminifera on the global scale. Understanding the controls on these modern-day distributions is important when using these organisms for paleoceanographic reconstructions. As such, this study constrains modern depth habitats for the northern equatorial Indian Ocean, for 14 planktonic foraminiferal species (G. ruber, G. elongatus, G. pyramidalis, G. rubescens, T. sacculifer, G. siphonifera, G. glutinata, N. dutertrei, G. bulloides, G. ungulata, P. obliquiloculata, G. menardii, G. hexagonus, G. scitula) using stable isotopic signatures (δ18O and δ13C) and Mg/Ca ratios. We evaluate two aspects of inferred depth habitats: (1) the significance of the apparent calcification depth (ACD) calculation method/equations and (2) regional species-specific ACD controls. Through a comparison with five global, (sub)tropical studies we found the choice of applied equation and δ18Osw significant and an important consideration when comparing with the published literature. The ACDs of the surface mixed layer and thermocline species show a tight clustering between 73–109 m water depth coinciding with the deep chlorophyll maximum (DCM). Furthermore, the ACDs for the sub-thermocline species are positioned relative to secondary peaks in the local primary production. We surmise that food source plays a key role in the relative living depths for the majority of the investigated planktonic foraminifera within this oligotrophic environment of the Maldives and elsewhere in the tropical oceans.
Bereits im Erdgeschoss der Sophie-Gips-Höfe, einer ehemaligen Fabrikanlage für Nähmaschinen und Fahrradketten, die heute die Sammlung Hoffmann beherbergt, begegnet einem eine große, rostige, konvexe Stahlplatte von Richard Serra. Wie so oft bei Serra beeindrucken die Materialeigenschaften: die Oberfläche, das Gewicht und die Stabilität dieser Metallscheibe. Mit zwei weiteren Skulpturen zusammen begrüßen die Werke als Ensemble die Kunstinteressierten. Im 3. Stock angekommen, ist der Eintretende bei schlechtem Wetter zum Schutze des Parketts aufgefordert, Filzpantoffeln anzuziehen und darf erst dann durch die repräsentativen Räume schlurfen. Bis die Besuchergruppe vollständig ist, wartet man in dem ersten Raum der bereits bis zur Decke voll mit Kunst von Joëlle Tuerlinckx ist. ...
uORF-tools—workflow for the determination of translation-regulatory upstream open reading frames
(2019)
Ribosome profiling (ribo-seq) provides a means to analyze active translation by determining ribosome occupancy in a transcriptome-wide manner. The vast majority of ribosome protected fragments (RPFs) resides within the protein-coding sequence of mRNAs. However, commonly reads are also found within the transcript leader sequence (TLS) (aka 5’ untranslated region) preceding the main open reading frame (ORF), indicating the translation of regulatory upstream ORFs (uORFs). Here, we present a workflow for the identification of translation-regulatory uORFs. Specifically, uORF-Tools uses Ribo-TISH to identify uORFs within a given dataset and generates a uORF annotation file. In addition, a comprehensive human uORF annotation file, based on 35 ribo-seq files, is provided, which can serve as an alternative input file for the workflow. To assess the translation-regulatory activity of the uORFs, stimulus-induced changes in the ratio of the RPFs residing in the main ORFs relative to those found in the associated uORFs are determined. The resulting output file allows for the easy identification of candidate uORFs, which have translation-inhibitory effects on their associated main ORFs. uORF-Tools is available as a free and open Snakemake workflow at https://github.com/Biochemistry1-FFM/uORF-Tools. It is easily installed and all necessary tools are provided in a version-controlled manner, which also ensures lasting usability. uORF-Tools is designed for intuitive use and requires only limited computing times and resources.
GLC Newsletter 01/2019
(2019)
This publication aims to provide an overview on how digitalisation of communication results in societal trends such as an “always-on” culture, “shitstorms”, “fake news” and their effects on schools, media, non-governmental organisations, work and sports.
Table of Contents
Christian Reuter, Tanjev Schultz, Christian Stegbauer: Digitalisation and Communication: Societal Trends and the Change in Organisations — Preface
Daniel Lambach: Digital World and Real World – Opposites no more
Leonard Reinecke: Brave New Smartphone World? Psychological Wellbeing between Digital Autonomy and Constant Connectedness
Christian Reuter: Fake News and the Manipulation of Public Opinion
Christian Stegbauer: Tantrums on a Massive Scale, or: Could Anybody be a Victim of Social Media Outrage?
Volker Schaeffer: “We Have Always Been Living in Bubbles” The Opportunities and Risks in the Digitalisation of Media
Angela Menig, Verena Zimmermann, Joachim Vogt: Digital Transformation of the Workplace – Risk or Opportunity?
Stefan Aufenanger, Jasmin Bastian: Digital Technology in Schools
Angelika Böhling: Development Assistance Goes Digital - The Opportunities and Challenges Non-Governmental Organisations Face in Digital Communication
Josef Wiemeyer: Digital Interaction and Communication in Sports
Nonerythroid spectrin αII (SPTAN1) is an important cytoskeletal protein that ensures vital cellular properties including polarity and cell stabilization. In addition, it is involved in cell adhesion, cell-cell contact, and apoptosis. The detection of altered expression of SPTAN1 in tumors indicates that SPTAN1 might be involved in the development and progression of cancer. SPTAN1 has been described in cancer and therapy response and proposed as a potential marker protein for neoplasia, tumor aggressiveness, and therapeutic efficiency. On one hand, the existing data suggest that overexpression of SPTAN1 in tumor cells reflects neoplastic and tumor promoting activity. On the other hand, nuclear SPTAN1 can have tumor suppressing effects by enabling DNA repair through interaction with DNA repair proteins. Moreover, SPTAN1 cleavage products occur during apoptosis and could serve as markers for the efficacy of cancer therapy. Due to SPTAN1’s multifaceted functions and its role in adhesion and migration, SPTAN1 can influence tumor growth and progression in both positive and negative directions depending on its specific regulation. This review summarizes the current knowledge on SPTAN1 in cancer and depicts several mechanisms by which SPTAN1 could impact tumor development and aggressiveness.
hallmark of ageing is the redistribution of body fat. Particularly, subcutaneous fat decreases paralleled by a decrease of skin collagen I are typical for age-related skin atrophy. In this paper, we hypothesize that collagen I may be a relevant molecule stimulating the differentiation of adipose-derived stem cells (ASCs) into adipocytes augmenting subcutaneous fat. In this context lipogenesis, adiponectin, and collagen I receptor expression were determined. Freshly isolated ASCs were characterized by stemness-associated surface markers by FACS analysis and then transdifferentiated into adipocytes by specific medium supplements. Lipogenesis was evaluated using Nile Red staining and documented by fluorescence microscopy or quantitatively measured by using a multiwell spectrofluorometer. Expression of adiponectin was measured by real-time RT-PCR and in cell-free supernatants by ELISA, and expression of collagen I receptors was observed by western blot analysis. It was found that supports coated with collagen I promote cell adhesion and lipogenesis of ASCs. Interestingly, a reverse correlation to adiponectin expression was observed. Moreover, we found upregulation of the collagen receptor, discoidin domain-containing receptor 2; receptors of the integrin family were absent or downregulated. These findings indicate that collagen I is able to modulate lipogenesis and adiponectin expression and therefore may contribute to metabolic dysfunctions associated with ageing.
Background: GLUT1-deficiency-syndrome (G1DS) is an autosomal dominant genetic disorder based on a mutation of the SLC2A1 gene. This mutation can lead to an encephalopathy due to abnormal glucose transport in the brain. G1DS is a rare disease, with an estimated incidence of 1: 90 000.
Case report: We report a case of a 10-year-old female who presented with recurrent fever, headaches, and vertigo for more than 3 days within 2 weeks following pneumonia. A bilateral mastoiditis was proven by a cerebral magnetic resonance imaging and a cranial computed tomography scan. The patient had to undergo mastoidectomy and thus, her first general anesthesia. Half a year previously she was diagnosed with G1DS. According to the standard of care, a ketogenic diet had been administered since the patient’s diagnosis 6 months earlier. Our patient received a total intravenous anesthesia (TIVA) using propofol, fentanyl, and rocuronium administered without any incidents.
Conclusions: We recommend normoglycemia during the perioperative phase and avoidance of glucose-based medication to keep a patient’s ketotic state. Our case highlights that TIVA, with the outlined medication used in this case, was safe when the patient’s ketotic state and periprocedural blood glucose was monitored continuously. Nevertheless, we would suggest using remifentanil instead of fentanyl for future TIVAs due to a reduced increase in blood glucose level in our patient.
A machine-learned analysis suggests non-redundant diagnostic information in olfactory subtests
(2019)
Background: The functional performance of the human sense of smell can be approached via assessment of the olfactory threshold, the ability to discriminate odors or the ability to identify odors. Contemporary clinical test batteries include all or a selection of these components, with some dissent about the required number and choice.
Methods: Olfactory thresholds, odor discrimination and odor identification scores were available from 10,714 subjects (3662 with anomia, 4299 with hyposmia, and 2752 with normal olfactory function). To assess, whether the olfactory subtests confer the same information or each subtest confers at least partly non-redundant information relevant to the olfactory diagnosis, we compared the diagnostic accuracy of supervised machine learning algorithms trained with the complete information from all three subtests with that obtained when performing the training with the information of only two or one subtests.
Results: The training of machine-learned algorithms with the full information about olfactory thresholds, odor discrimination and odor identification from 2/3 of the cases, resulted in a balanced olfactory diagnostic accuracy of 98% or better in the 1/3 remaining cases. The most pronounced decrease in the balanced accuracy, to approximately 85%, was observed when omitting olfactory thresholds from the training, whereas omitting odor discrimination or identification was associated with smaller decreases (balanced accuracies approximately 90%).
Conclusions: Results support partly non-redundant contributions of each olfactory subtest to the clinical olfactory diagnosis. Olfactory thresholds provided the largest amount of non-redundant information to the olfactory diagnosis.
Individual adult ventricular cardiomyocytes are either mono- or multi-nucleated and undergo morphological changes during cardiac hypertrophy. However, corresponding transcriptional signatures, reflecting potentially different functions or the ability for cell-cycle entry, are not known. The aim of this study was to determine the transcriptional profile of mono- and multi-nucleated adult cardiomyocytes by single-cell RNA-sequencing (scRNA-seq) and to investigate heterogeneity among cardiomyocytes under baseline conditions and in pressure-induced cardiac hypertrophy. We developed an array-based approach for scRNA-seq of rod-shaped multi-nucleated cardiomyocytes from both healthy and hypertrophic hearts. Single-cell transcriptomes of mono- or multi-nucleated cardiomyocytes were highly similar, although a certain degree of variation was noted across both populations. Non-image-based quality control allowing inclusion of damaged cardiomyocytes generated artificial cell clusters demonstrating the need for strict exclusion criteria. In contrast, cardiomyocytes isolated from hypertrophic heart after transverse aortic constriction showed heterogeneous transcriptional signatures, characteristic for hypoxia-induced responses. Immunofluorescence analysis revealed an inverse correlation between HIF1α+ cells and CD31-stained vessels, suggesting that imbalanced vascular growth in the hypertrophied heart induces cellular heterogeneity. Our study demonstrates that individual mono- and multi-nucleated cardiomyocytes express nearly identical sets of genes. Homogeneity among cardiomyocytes was lost after induction of hypertrophy due to differential HIF1α-dependent responses most likely caused by none-homogenous vessel growth.
Mapping biodiversity is the marathon of the 21st Century as an answer to the present extinction crisis. A century in which science is also characterised by large scientific datasets collected through new technologies aiming to fill gaps in our knowledge of species distributions. However, most species records rely on observations that are not linked to specimens, which does not allow verification of species hypotheses by other scientists. Natural history museums form a verifiable source of biodiversity records which were made by taxonomists. Nonetheless, these museums seem to be forgotten by biologists in scientific fields other than taxonomy or systematics. Naturalis Biodiversity Center (NBC) in Leiden is care keeper of large collections of marine organisms, which were sampled in the Northeast Atlantic during the CANCAP and Tyro Mauritania II expeditions (1976–1988). Many octocorals were sampled and deposited in the NBC collection, where they became available for study and were partially identified by the senior author (M.G.) in the 1980s. Nonetheless, no checklist or taxonomic revision was published so far with the complete results. In 2016 the first author visited NBC to examine NE Atlantic Plexauridae octocorals. Plexauridae octocoral-vouchered records were listed and mapped to reveal high standard primary biodiversity records unreported so far for the NE Atlantic Ocean. Twenty-four Plexauridae species with ~ six putative new species to science were discovered and eleven new biogeographical records were made from distinct Macaronesian archipelagos. Finally, new depth range records were found for three species at sea basin level and for eight species at a regional scale.
The plasma membrane (PM) is composed of a complex lipid mixture that forms heterogeneous membrane environments. Yet, how small-scale lipid organization controls physiological events at the PM remains largely unknown. Here, we show that ORP-related Osh lipid exchange proteins are critical for the synthesis of phosphatidylinositol (4,5)-bisphosphate [PI(4,5)P2], a key regulator of dynamic events at the PM. In real-time assays, we find that unsaturated phosphatidylserine (PS) and sterols, both Osh protein ligands, synergistically stimulate phosphatidylinositol 4-phosphate 5-kinase (PIP5K) activity. Biophysical FRET analyses suggest an unconventional co-distribution of unsaturated PS and phosphatidylinositol 4-phosphate (PI4P) species in sterol-containing membrane bilayers. Moreover, using in vivo imaging approaches and molecular dynamics simulations, we show that Osh protein-mediated unsaturated PI4P and PS membrane lipid organization is sensed by the PIP5K specificity loop. Thus, ORP family members create a nanoscale membrane lipid environment that drives PIP5K activity and PI(4,5)P2 synthesis that ultimately controls global PM organization and dynamics.
We uncover a new channel for spillovers of funding dry-ups. The 2016 US money market fund (MMF) reform exogenously reduced unsecured MMF funding for some banks. We use novel data to trace those banks to a platform for corporate deposit funding. We show that intensified competition for corporate deposits spilled the funding squeeze over to other banks with no MMF exposure. These banks paid more for deposits, and their pool of funding providers deteriorated. Moreover, their lending volumes and margins declined, and their stocks underperformed. Our results suggest that banks' competitiveness in funding markets affect their competitiveness in lending markets.
The nuclear exosome and its essential co-factor, the RNA helicase MTR4, play crucial roles in several RNA degradation pathways. Besides unwinding RNA substrates for exosome-mediated degradation, MTR4 associates with RNA-binding proteins that function as adaptors in different RNA processing and decay pathways. Here, we identify and characterize the interactions of human MTR4 with a ribosome processing adaptor, NVL, and with ZCCHC8, an adaptor involved in the decay of small nuclear RNAs. We show that the unstructured regions of NVL and ZCCHC8 contain short linear motifs that bind the MTR4 arch domain in a mutually exclusive manner. These short sequences diverged from the arch-interacting motif (AIM) of yeast rRNA processing factors. Our results suggest that nuclear exosome adaptors have evolved canonical and non-canonical AIM sequences to target human MTR4 and demonstrate the versatility and specificity with which the MTR4 arch domain can recruit a repertoire of different RNA-binding proteins.
We study nominal wage rigidity in the Netherlands using administrative data, which has three key features: (1) high-frequency (monthly), (2) high-quality (administrative records), and (3) high coverage (the universe of workers and the universe of firms). We find wage rigidity patterns in the data that are similar to wage behavior documented for other European countries. In particular we find that the hazard function has two spikes, one at 12 months and another one at 24 months and wage changes have time and state dependency components. As a novel and important piece of evidence we also uncover substantial heterogeneity in the frequency of wage changes due to explicit terms of the labor contract. In particular, contracts featuring flexible hours, such as on-call contracts, exhibit a higher probability of a change in the contract wage compared to fixed hour contracts. Once we split the sample based on contract characteristics, we also find that the response of wage changes to the time and state component is heterogeneous across different type of contracts - with relatively more downward adjustments in flexible-hour contract wages in response to aggregate unemployment.
Josef Wiemeyer ist Professor für Sportwissenschaft mit den Schwerpunkten Bewegungs- und Trainingswissenschaft und Sportinformatik an der Technischen Universität Darmstadt. Aktuell forscht er zu ausgewählten Themen des technologiegestützten Lernens und Trainings. Er hat unter anderem zu den Themen Serious Games für Gesundheit, individualisiertes Training mit Exergames, mobile Trainingsapplikationen und Lernen in Mensch- Roboter-Dyaden publiziert.
Angelika Böhling leitet die Presse- und Öffentlichkeitsarbeit der Kindernothilfe, einer der größten christlichen Kinderrechtsorganisationen Europas. Sie vertritt die Kindernothilfe als Pressesprecherin nach außen und ist zudem Vorstandsmitglied im Bündnis Entwicklung hilft, einem Zusammenschluss von neun großen Spendenorganisationen.
Stefan Aufenanger war Professor für Erziehungswissenschaft und Medienpädagogik an der Johannes Gutenberg-Universität Mainz, derzeit im Ruhestand. Er forscht momentan an fünf Schulen zum Zusammenhang von Digitalisierung, Persönlichkeitsentwicklung und Spiritualität. Seine letzten Publikationen befassten sich mit dem Einfluss digitaler Medien auf Kleinstkinder.
Jasmin Bastian ist Juniorprofessorin für Erziehungswissenschaft mit dem Schwerpunkt Medienpädagogik an der Johannes Gutenberg-Universität Mainz. Aktuell forscht sie zu digitalen Medien in der Schule, in der Hochschule und im Kindesalter. Sie arbeitet derzeit an Publikationen zum händischen vs. digitalen Mitschreiben in der Vorlesung, Tablets in der Schule und Anforderungen an die Lehrerbildung sowie dem Umgang mit digitalen Medien im Kindesalter.
Angela Menig ist Mitarbeiterin der Forschungsgruppe Arbeits- und Ingenieurpsychologie (FAI) am Institut für Psychologie der Technischen Universität Darmstadt. In Ihrer Forschung befasst sie sich mit den Themen Belastung und Beanspruchung von Beschäftigten, angewandte Gesundheitspsychologie sowie Human Factors in der Automobilforschung.
Verena Zimmermann ist ebenfalls Mitarbeiterin der Forschungsgruppe Arbeits- und Ingenieurpsychologie. Sie forscht an der Schnittstelle zwischen Psychologie und Cybersecurity zu den Themen "Human Factors in Safety and Security" und "Usable IT Security".
Prof. Dr. Joachim Vogt leitet seit 2009 die Forschungsgruppe Arbeits- und Ingenieurpsychologie der Technischen Universität Darmstadt. Er forscht und lehrt zur Gestaltung komplexer sozio-technischer Systeme in interdisziplinärer Zusammenarbeit mit den technischen Fachbereichen. Gestaltungsziele sind z.B. verbesserte Sicherheit und optimierte Mensch-Maschine-Schnittstellen.
Christian Stegbauer ist außerplanmäßiger Professor für Soziologie mit dem Schwerpunkt Netzwerksoziologie an der Goethe-Universität Frankfurt. Er forscht zurzeit zur Herausbildung von Mikrokulturen innerhalb von Beziehungsstrukturen. Wie dies geschieht, wird an alltäglichem Verhalten im Buch "Grundlagen der Netzwerkforschung: Situationen, Mikronetzwerke und Kultur" dargelegt. Seine aktuelle Publikation "Shitstorms: Der Zusammenprall digitaler Kulturen" wendet die Erkenntnisse an und zeigt, welches die Bedingungen der Entstehung von Shitstorms sind.