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This thesis is concerned with protein structures determined by nuclear magnetic resonance (NMR), and the text focuses on their analysis in terms of accuracy, gauged by the correspondence between the structural model and the experimental data it was calculated from, and in terms of precision, i.e. the degree of uncertainty of the atomic positions. Additionally, two protein structure calculation projects are described...
Due to recent technical developments, it became evident that the mammalian transcriptome is much more complex than originally expected. Alternative splicing(AS) and the transcription of long non-coding RNAs (lncRNAs) are two phenomenas which have been greatly underestimated in their frequency. Nowadays it is accepted that almost every gene has at least one alternative isoform and the number of lncRNAs exceeds the one of protein-coding genes.
We built user-friendly web interfaces which can process Affymetrix GeneChip Exon 1.0 ST Arrays (exon arrays) and GeneChip Gene 1.0 ST Arrays (gene arrays)for the analysis of alternative splicing events. Results are presented with detailed annotation information and graphics to identify splice events and to facilitate biological validations. Based on two studies using exon arrays, we show how our tools were used to profile genome-wide splicing changes under silencing of Jmjd6 and under hypoxic conditions. Since gene arrays are not intended for AS analysis originally, we demonstrated their applicability by profiling alternative splicing events during embryonic heart development.
To measure lncRNAs expressions with exon arrays, we completely re-annotation all probes and built a lncRNA specific annotation. To demonstrate the applicability of exon arrays in combination with our annotation, we profiled the expression of tens of thousands of lncRNAs. Further, our custom annotation allows for a detailed inspection of lncRNAs and to distinguish between isoforms, as we validated by RTPCR.
To allow for a general usage to the research community, we integrated the annotation in an easy-to-use web interface, which provides various helpful features for the analysis of lncRNAs.
RNA modifications are widespread in the RNA world. Nevertheless, their functions remain enigmatic. Recent analysis in tRNAs, mRNAs and rRNAs have revealed that apart from enriching their topological potential, these chemical modifications provide an added significant regulatory level to gene expression...
In the present study possible sources and pathways of the gasoline additive methyl tertiary-butyl ether (MTBE) in the aquatic environment in Germany were investigated. The objective of the present study was to clarify some of the questions raised by a previous study on the MTBE situation in Germany. In the USA and Europe 12 million t and 3 million t of MTBE, respectively, are used as gasoline additive. The detection of MTBE in the aquatic environment and the potential risk for drinking water resources led to a phase-out of MTBE as gasoline additive in single states of the USA. Meanwhile there is also an ongoing discussion about the substitution of MTBE in Europe and Germany. The annual usage of MTBE in Germany is about 600,000 t. However, compared to the USA, significant less data exists on the occurrence of MTBE in the aquatic environment in Europe. Because of its physico-chemical properties, MTBE readily vaporizes from gasoline, is water soluble, adsorbs only weakly to the underground matrix and is largely persistent to biological degradation. The toxicity of MTBE remains to be completely investigated, but MTBE in drinking water has low taste- and odor thresholds of 20-40 microgram/L. The present study was conducted by collecting water samples and analyzing them for their MTBE concentrations through a combination of headspace-solid phase microextraction (HS-SPME) and gas chromatography-mass spectrometry (GC-MS). The detection limit was 10 ng/L. The method was successfully tested in the framework of an interlaboratory study and showed recoveries of reference values of 89% (74 ng/L) and 104% (256 ng/L). The relative standard deviations were 12% and 6%. The investigation of 83 water samples from 50 community water systems (CWSs) in Germany revealed a detection frequency of 40% and a concentration range of 17-712 ng/L. The detection of MTBE in the drinking water samples could be explained by a groundwater pollution and the pathway river - riverbank filtration - waterworks. Rivers are important drinking water sources. MTBE is emitted into rivers through a variety of sources. In the present study, potential point sources were investigated, i.e. MTBE production sites/refineries/tank farms and groundwater pollutions. For this purpose, the spatial distribution of MTBE in three German rivers with the named potential emission sources located close to the rivers was investigated by analyzing 49 corresponding river water samples. The influence of the potential emission sources groundwater pollution and refinery/tank farm was successfully demonstrated in certain parts of the River Saale and the River Rhine. Increasing MTBE concentrations from 24 ng/L to 379 ng/L and from 73 ng/L to 5 microgram/L, respectively, could be observed in the parts investigated in these two rivers. The identification of such emission sources is important for future modeling. Further sources of MTBE emission into surface water are industrial (non-petrochemical) and municipal sewage plant effluents. In the present study long-term monitoring of water from the River Main (n=67 samples), precipitation (n=89) and industrial (n=34) and municipal sewage plant effluents (n=66) was conducted. The comparison of the data sets revealed that maximum MTBE concentrations in the River Main of up to 1 microgram/L were most possibly due to single industrial effluents with MTBE concentrations of up to 28 microgram/L (measured in this study). The average MTBE content of 66 ng/L in the River Main most probably originated from municipal sewage plant effluents and further industrial effluents. Background concentrations of <30 ng/L could be related to the direct atmospheric input via precipitation. A certain aspect of the atmospheric MTBE input is represented by the input of MTBE into river water or groundwater through snow. In the present study 43 snow samples from 13 different locations were analyzed for their MTBE content. MTBE could be detected in 65% of the urban and rural samples. The concentrations ranged from 11-613 ng/L and were higher than the concentrations in rainwater samples formerly analyzed. Furthermore, a temperature dependency and wash-out effects could be observed. The atmospheric input of MTBE was in part also visible in the analyzed groundwater samples (n=170). The detection frequencies in non-urban and urban wells were 24% and 63%, respectively. The median concentrations were 177 ng/L and 57 ng/L. In wells located in the vicinity of sites with gasoline contaminated groundwater, MTBE concentrations of up to 42 mg/L could be observed. The MTBE emission sources and the different pathways of MTBE in the aquatic environment demonstrated in the present study and other works raise the question whether the use of MTBE in a bulk product like gasoline should be continued in the future. Currently, possible substitutes like ethyl tertiary-butyl ether (ETBE) or ethanol are being discussed.
The East African Rift System (EARS) was initiated in the Eocene epoch between 50 and 21 Ma probably due to the influence of mantle plumes that caused volcanism, flood basalts and rifting extensions in Ethiopa and the Afar region. As a result of magmatic intrusions and adiabatic decompression melting within the lithosphere caused by the impact of the Kenya plume, there was a southward propagation of the EARS of about 30 – 15 Ma from Ethiopia to Kenya, which coincide with the occurrence of volcanism. The EARS developed towards the south along the margins of the Tanzania Craton between 15 and 8 Ma. Previous findings of low-velocity anomalies within the upper mantle and the mantle transition zone indicate an upwelling of hot mantle material in the vicinity of the Afar region and the East African Rift. This study includes the analysis of P- and S-receiver functions in order to determine further impacts on the lithosphere from below. The aim was to determine the topographic undulations of further boundary layers and to identify their variability owing to the rifting processes and the formation of the EARS. The study area included the Tanzania Craton and the surrounding rift branches of the East African Rift System.
The region of the Rwenzori Mountains can be analysed in detail because of the large dataset of the RiftLink project. The use of the P-receiver function technique and the H-K stacking method enabled to determine different vP /vS ratios depending on the tectonic setting in the Rwenzori region: Rift shoulders (vP /vS =1.74), Albert Rift segment (vP /vS =1.80), Edward Rift segment (vP /vS =1.87) and Rwenzori Mountains (vP /vS =1.86). To determine the topography of the Moho, it is necessary to take into account the thickness of the sedimentary layer, the surface topography, the azimuthal variations in crustal thickness and the impact of local anomalies. After correcting these effects on the Moho depths, significant variations in Moho topography could be determined. The Moho depths range from 29 to 39 km beneath the rift shoulders of the Albertine Rift. Within the rift valley, the crustal thickness varies between 25 – 31 km in the Edward Rift segment and 22 – 30 km in the Albert Rift segment. An averaged crustal thickness of about 26 km within the rift valley indicates the lack of the crustal root beneath the Rwenzoris. Similar variations in crustal thickness were determined by using an automatic procedure for analysing S-receiver functions that was developed in this study.
The S-receiver functions are created by applying a rotation criterion in order to rotate the Z, N and E components into the L, Q and T components. It is necessary to perform trial rotations using different incident and azimuth angles to determine the correct rotation angles. The latter are identified by the use of the rotation criterion, including the amplitude ratio of the converted Moho signal to the direct S/SKS-wave signal. The L component is rotated correctly in the direction of the incident shear wave in the case of the maximum amplitude ratio. After analysing the frequency content of the receiver functions in order to sort out harmonic and long-periodic traces, the individual Moho signals are checked for consistency in order to remove atypic signals. To increase the signal-to-noise ratios on the traces, the S-receiver functions are stacked. For this purpose, the signals of the direct shear waves must originate from similar epicenters. On the basis of similar ray paths, the receiver functions show comparable waveforms and converted signals. To perform the stacking procedure, it is necessary to merge the datasets of the adjacent stations in order to obtain a sufficient number of receiver functions. This analysis is based on the assumption that the incident seismic waves arriving at the adjacent stations penetrate to some extent the same underground structures in the case of similar wave propagation paths. This approach accounts for the fact that the converted signals do not result exclusively from the piercing points at the boundary layers. Further signals originate from the conversions at the boundary layer within the Fresnel Zone. The piercing points are derived from the significant signals in the receiver functions. Depending on the order of arrival of the converted phases on the traces, the signals are attributed to the theoretical discontinuities DIS1, DIS2, DIS3 and DIS4. However, partly due to the low signal-to-noise ratios on the traces, it is difficult to identify the real conversions on the traces and to ensure that the converted signals are attributed to the correct boundary layers. For this reason, it is necessary to check the consistency of the conversion depths among each other. In the case of inconsistent conversion depths, the corresponding signals are either adjusted to another seismic boundary layer or removed from the dataset. To verify the functionality of the automatic procedure and to determine the resolvability with respect to two boundary layers, several models are tested including horizontal and dipping discontinuities. To resolve distinct discontinuities, their depths must differ by at least 60 km, otherwise, due to similar depth ranges of the different boundary layers, the converted signals cannot be separated from each other. As a consequence, the converted signals that originate from different discontinuities are attributed to a single one. Further tests including break-off edges of seismic discontinuities are performed to check the attributions of the converted signals to the discontinuities. Owing to the varying number of boundary layers, the converted signals cannot be attributed to the discontinuities according to the order of their arrivals on the traces. It is necessary to correct their attributions to the seismic discontinuities in order to resolve the boundary layers.
The crust-mantle boundary and further discontinuities within the lithospheric mantle are investigated by applying this automatic procedure. Depending on the tectonic setting, the conversion depths of the Moho range from about 30 – 45 km beneath the western rift shoulder to 20 – 35 km within the rift valley up to 30 – 40 km beneath the eastern rift shoulder. The long wavelengths of the shear waves hamper the correct identification of the converted phases in the S-receiver functions. With respect to the relative differences in conversion depth, the topographic undulations of the crust-mantle boundary are consistent with the Moho depths derived from P-receiver functions. In contrast to the Rwenzori region, it is difficult to resolve completely the trend of the Moho in the remaining area of the East African Rift due to the small dataset provided by IRIS. The results exibit an increase in crustal thickness to up to 45 km in the region of the Cenozoic volcanics such as Virunga, Kivu, Rungwe and Kenya. The greatest Moho depths of more than 50 km are located near Mount Kilimanjaro. In addition to the Moho, the analysis of the S-receiver functions revealed two further boundary layers at depths of 60 – 140 km and 110 – 260 km, which are associated with a mid-lithospheric discontinuity and the lithosphere-asthenosphere boundary, respectively. The shallowest conversion depths of the LAB are focussed to small-scale regions within the rift branches, namely the northern Albertine Rift, the Chyulu Hills and the Mozambique Belt, which are located around the Tanzania Craton. The larger thickness of the lithosphere beneath the cratonic terrain indicates that the Tanzania Craton is not significantly eroded. However, there are indications that the lithosphere beneath the craton and the rift branches is penetrated by ascending asthenospheric melts to depths of up to 140 and 60 km, respectively. The top of the ascending melts is associated with the occurrence of the mid-lithospheric discontinuity. The shallowest conversion depths of this boundary layer (60 – 90 km) are related to the rifted areas of the EARS and the Cenozoic volcanic provinces, which are located along the Albertine Rift, the Kenya Rift and the Rukwa-Malawi rift zones. The deepest conversion depths of up to 140 km are related to the Rwenzori Belt, the Ugandan Basement Complex and the interior of the Tanzania Craton.
Ziel der Arbeit war es, die Flugzeitmassenspektrometrie als neue Analysemethode für die instrumentelle Analytik halogenierter Spurengase in der Luft zu etablieren. Die grundle-gende Motivation dafür ist, dass anthropogene Emissionen vieler Vertreter dieser Sub-stanzklasse einen negativen Einfluss auf die Umwelt zeigen: in der Atmosphäre agieren die Substanzen bzw. ihre Abbauprodukte als Katalysatoren für den stratosphärischen Ozonab-bau und verstärken den Strahlungsantrieb der Erde durch Absorption elektromagnetischer Strahlung im sogenannten atmosphärischen Fenster. Um diese Effekte und deren Auswir-kung quantifizieren zu können, ist es notwendig, Konzentrationen und Trends der Substan-zen in der Atmosphäre zu überwachen. Nur so können Gegenmaßnahmen wie Produktions-reglementierungen geplant und bewertet werden. In Kombination mit inverser Modellie-rung können zudem Rückschlüsse über tatsächlich emittierten Mengen gezogen werden. Dies stellt den Anspruch an die Analytik, sehr geringe Mengen dieser Gase sehr präzise quantifizieren zu können, um auch schwache Trends zu erkennen. Zudem muss die Analy-semethode die Möglichkeit zu bieten, mit der wachsenden Anzahl bekannter und zu über-wachender Substanzen Schritt zu halten. Besonders für letzteren Aspekt bietet die Flug-zeitmassenspektrometrie einen entscheidenden Vorteil gegenüber der „konventionellen“ Methode, der Quadrupolmassenspektrometrie: sie zeichnet das gesamten Massenspektrum auf ohne dadurch an Empfindlichkeit einzubüßen. Um das atmosphärische Mischungsver-hältnis von Substanzen im Bereich von pmol mol−1 bis fmol mol−1 bestimmen zu können, muss das Quadrupolmassenspektrometer im Single Ion Monitoring Modus betrieben wer-den – so wird zwar eine hohe Sensitivität erreicht, es wird aber auch nur die Intensität eines bestimmten Masse zu Ladungsverhältnisses (kurz: Masse) zu einem Zeitpunkt aufgezeich-net. Ein Flugzeitmassenspektrometer hingegen extrahiert Ionen mit einer Frequenz im Ki-loherzbereich und zeichnet für jede Extraktion das vollständige Flugzeitspektrum und da-mit Massenspektrum auf.
Aufgabe dieser Arbeit war es, ein Flugzeitmassenspektrometer mit vorgeschalteter Pro-benanreicherungseinheit sowie Gaschromatograph zur Trennung des Subtanzgemisches vor der Detektion aufzubauen und Werkzeuge zur Datenauswertung zu entwickeln. Um einen zukünftigen Feldeinsatz vorzubereiten, sollte der Aufbau möglichst kompakt, mobil und vollständig automatisiert sein. Anschließend sollte Empfindlichkeit, Präzision und dynami-scher Messbereich geprüft, optimiert und die Anwendbarkeit zur Analyse halogenierter Spurengase gezeigt werden. Die Ergebnisse aus der in der vorliegenden Arbeit präsentier-ten Geräteentwicklung finden sich in drei Publikationen wieder, welche in thematischer Reihenfolge die Probenanreicherung (Obersteiner et al., 2016b), den Vergleich von Quadrupol- und Flugzeitmassenspektrometrie (Hoker et al., 2015) sowie Eigenschaften und Anwendung des neuen Aufbaus (Obersteiner et al., 2016a) behandeln. Mit den genannten Aufsätzen ist die Arbeitsgruppe Engel weltweit die erste, welche hochpräzise Analytik ha-logenierter Spurengase routinemäßig mittels Flugzeitmassenspektrometrie durchführt. Der nächste Schritt ist der Übergang von der Laboranwendung zur Feldmessung, z.B. in Form von bodenbasierter in situ Analyse troposphärischer Luftmassen am Taunus Observatorium auf dem Kleinen Feldberg. Da es bisher keine Messstation für die hier beschriebene analy-tische Fragestellung in Deutschland gibt, könnte eine deutliche Verbesserung der Überwa-chung halogenierter Treibhausgase und ozonzerstörender Substanzen in Europa erzielt wer-den. Weiterhin wäre eine Flugzeugapplikation in Zukunft denkbar, welche neben der durch das Flugzeitmassenspektrometer abgedeckten Substanzbandbreite auch von dessen hoher möglicher Spektrenrate profitieren könnte. In Kombination mit Hochgeschwindigkeitsgas-chromatographie könnte eine bisher unerreichte Zeitauflösung der Beprobung der Atmo-sphäre mittels Gaschromatographie-Massenspektrometrie erzielt werden.
The membrane protein Green Proteorhodopsin (GPR), found in an uncultured marine γ-proteobacterium, is a retinal binding protein and contains a conserved structure of seven transmembrane helices (A-G). The retinal is bound to a conserved lysine residue (K231) in helix G via Schiff base linkage. It belongs to the widespread family of microbial rhodopsins and functions as a light dependent outward proton pump that bacteria may utilize for establishing a proton gradient across the cellular membrane. Proton pumping takes place after photon absorption, where GPR goes through a series of conformational changes, termed photocycle, causing the proton to be transported across the cellular membrane from the intra-cellular to the extracellular space. It is further mediated by the highly conserved functional residues D97 and E108, which function as the primary proton acceptor and primary proton donor for the protonated Schiff base, respectively. Another functionally important residue is the highly conserved H75 in helix B. It forms an intra-molecular cluster with D97 and is responsible for the high pKa value of the primary proton acceptor, stabilized by a direct interaction between D97 and H75.
Different Proteorhodopsin variants are globally distributed and colour tuned to their environment, depending on the water depth in which they occur. A single residue in the retinal binding pocket at position 105 is responsible for determining the absorption wavelength of the protein. GPR (from eBAC31A08) contains a leucine at position 105, while BPR (blue proteorhodopsin, from Hot75m4) in deeper waters possesses a glutamine. Although GPR shows 79% sequence identity with BPR, a single amino acid substitution (L105Q) in GPR is able to switch the absorption maximum to the one of BPR.
Protein oligomerisation describes the association of subunits (protomers) through non-covalent interactions, forming macromolecular complexes. It is an important structural characteristic of microbial rhodopsins, contributing to structural stability and promoting tight packing of the protomers in the bacterial membrane. GPR was shown to assemble into radially arranged oligomers, mainly pentamers and hexamers. No high resolution crystal structure of the whole GPR complex is available, but the structurally related BPR (Hot75m4) was successfully crystallized, showing pentameric oligomers.
The BPR crystal structure model reveals detailed information about complex assembly of the whole proteorhodopsin family. It reveals the oligomeric structures and shows residues that are part of the protomer interfaces, forming cross-protomer contacts, which is valuable information for the elaborate analysis of cross-protomer interactions of GPR oligomers.
Based on the knowledge of GPR and BPR oligomeric complexes, the aim of this study is to analyse specific cross-protomer contacts and to characterize the functional role of GPR oligomerisation. This includes the identification of residues, which are part of charged cross-protomer contacts and play an important role for the formation of the GPR oligomeric complex. Furthermore, this study deals with a detailed characterization of a potentially functional cross-protomer triad between the residues D97-H75-W34, which was detected in the BPR structural model. Hereby, the focus lies especially on the functional role H75, which is highly conserved and is positioned in between the primary proton acceptor D97 and W34 across the protomer interface. In summary, this study addresses GPR oligomerisation via specific cross-protomer contacts and its potential role for the functional mechanism of the protein.
The fundamental technique used in this study is solid-state NMR. Furthermore, an elaborate characterization of GPR oligomerisation was executed using a variety of biochemical methods and mutational approaches. Solid-state NMR is a powerful biophysical method to analyse membrane proteins in their native lipid environment and can be used to obtain diverse information about structure, molecular dynamics and orientation of the protein in the lipid bilayer.
Solid-state NMR naturally has a low sensitivity. In order to detect the low number of spins, DNP signal enhancement is of particular importance in this study. It is exhibited under cryogenic conditions and allows to drastically enhance the solid-state NMR signal by transferring magnetization from highly polarized electrons to the nuclear spins.
By applying these methods and techniques on GPR oligomers, this study reveals new insights in specific cross-protomer interactions in the complex. First the oligomeric states of GPR were determined for the specific experimental conditions used in this study. LILBID-MS, BN-PAGE and SEC analysis identified the pentameric state to be dominant for GPR. Furthermore, specific interactions across the protomer interface, which drive GPR oligomerisation, were identified. This was conducted by creating mixed 13C-15N labelled complexes. These mixed complexes show a unique isotope labelling pattern across their protomer interfaces. Solid-state NMR 13C-15N-correlation spectroscopy (TEDOR) was used to identify through-space dipole-dipole couplings, which indicate specific cross-protomer contacts. The results indicated that the residues R51, D52, E50 and T60 are important for GPR oligomerisation, and further analysis via single mutations of these residues showed a severe impact of the GPR oligomerisation behaviour.
The functional importance of GPR oligomerisation was analysed by DNP-enhanced solid-state NMR on the cross-protomer D97-H75-W34 triad. The DNP cryogenic conditions allowed to trap GPR in distinct stages of the photocycle. It could be shown that trapping GPR in a specific intermediate leads to a drastic conformational effect for the highly conserved H75 residue. Furthermore, DNP-enhanced solid-state NMR was used to characterize the cross-protomer contact between H75 and W34. Mutations of W34 could show that the cross-protomer interaction is highly important for the functionality of the protein, as negative mutants such as W34E showed a reverse proton transport across the bacterial membrane.
In summary this study represents a detailed analysis of GPR cross-protomer interactions and sheds light into the cause and functional importance of oligomeric complex formation in the microbial rhodopsin.
Analysis of coding principles in the olfactory system and their application in cheminformatics
(2007)
Unser Geruchssinn vermittelt uns die Wahrnehmung der chemischen Welt. Im Laufe der Evolution haben sich in unserem olfaktorischen System Mechanismen entwickelt, die wahrscheinlich optimal auf die Erfüllung dieser Aufgabe angepasst sind. Die Analyse dieser Verarbeitungsstrategien verspricht Einblicke in effiziente Algorithmen für die Kodierung und Verarbeitung chemischer Information, deren Entwicklung und Anwendung dem Kern der Chemieinformatik entspricht. In dieser Arbeit nähern wir uns der Entschlüsselung dieser Mechanismen durch die rechnerische Modellierung von funktionellen Einheiten des olfaktorischen Systems. Hierbei verfolgten wir einen interdisziplinären Ansatz, der die Gebiete der Chemie, der Neurobiologie und des maschinellen Lernens mit einbezieht.
Fas Ligand (FasL; CD95L; CD178; TNSF6) is a 40 kDa glycosylated type II transmembrane protein with 279 aa in mice and 281 aa in humans that belongs to the tumor necrosis factor (TNF) family. The extracellular domain (ECD) harbors a TNF homology domain, the receptor binding site, a motif for self assembly and trimerization, and several putative N-glycosylation and a metalloprotease cleavage site/s. The cytoplasmic tail of FasL is the longest of all TNFL family members and contains several conserved signaling motifs, such as a putative tandem Casein kinase I phosphorylation site, a unique proline-rich domain (PRD) and phosphorylatable tyrosine residues (Y7 in mice; Y7, Y9, Y13 in human). The FasL/Fas system is renowned for the potent induction of apoptosis in the receptor-bearing cell and is especially important for immune system functions. It is involved in the killing of target cells by natural killer (NK) and cytotoxic T cells, in the (self) elimination of effector cells following the proliferative phase of an immune response (activation-induced cell death; AICD), in the maintenance of immuneprivileged sites and in the induction and maintenance of peripheral tolerance. Owing to its potent pro-apoptotic signaling capacity and important functions, FasL expression and activity are tightly regulated at transcriptional and posttranscriptional levels and restricted to few cell types, such as immune effector cells and cells of immune-privileged sites. In contrast, Fas is expressed in a variety of tissues including lymphoid tissues, liver, heart, kidney, pancreas, brain and ovary. In addition to its pro-apoptotic function, the FasL/Fas system can also elicit nonapoptotic signals in the receptor-expressing cell. Among others, Fas-signaling exerts co-stimulatory functions in the immune system, e.g. by promoting survival, activation and proliferation of T cells. Besides the capacity to deliver a signal into receptor-bearing cells (‘forward signal’), FasL can receive and transmit signals into the ligand-expressing cell. This phenomenon has been described for several TNF family ligands and is known as ‘reverse signaling’. The first evidence for the existence of reverse signaling into FasL-bearing cells stems from two studies that demonstrated either co-stimulation of murine CD8+ T cell lines by FasL cross-linking or inhibition of activation-induced proliferation of murine CD4+ T cells. In both cases, the observed changes of proliferative behaviour critically depended on the presence of a signaling-competent FasL. Almost certainly, the FasL ICD is functionally involved in signal-transmission: (i) The ICD is highly conserved across species and harbors several signaling motifs, most notably a unique PRD. (ii) Numerous proteins have been identified which interact with the FasL PRD via their SH3 or WW domains and regulate various aspects of FasL biology, such as FasL sorting, storage, cell surface expression and the linkage of FasL to intracellular signaling pathways. (iii) Post-translational modifications of the ICD have been implicated in the sorting of FasL to vesicles and the FasL-dependent activation of Nuclear factor of activated T cells (NFAT). (iv) Proteolytic processing of FasL liberates the ICD and allows its translocation into the nucleus where it might influence gene transcription. (v) It could be shown that overexpression of the FasL ICD is sufficient to initiate reverse signaling upon concomitant T cell receptor (TCR) stimulation and ICD cross-linking. Conflicting data on the consequences of FasL reverse signaling exist, and costimulatory as well as inhibitory functions have been reported. These discrepancies probably reflect the use of artificial experimental systems. Neither the precise molecular mechanism underlying FasL reverse signaling, nor its physiological relevance have been addressed at the endogenous protein level in vivo. Therefore, a ‘knockout/knockin’ mouse model in which wildtype FasL was replaced with a deletion mutant lacking the intracellular portion (FasL Delta Intra) was established in the group of PD Dr. Martin Zörnig. In the present study, FasL Delta Intra mice were phenotypically characterized and were employed to investigate the physiological consequences of FasL reverse signaling at the molecular and cellular level. To ensure that FasL Delta Intra mice represent a suitable model to study the consequences of FasL reverse signaling, we demonstrated that activated lymphocytes from homozygous FasL Delta Intra or wildtype mice express comparable amounts of (truncated) FasL at the cell surface. The truncated protein retains the capacity to induce apoptosis in Fas receptor-positive target cells, as co-culture assays with FasL-expressing activated lymphocytes and Fas-sensitive target cells showed. Additionally, systematic screening of unchallenged mice did not reveal any phenotypic abnormalities. Notably, signs of a lymphoproliferative autoimmune disease associated with FasL-deficiency could not be detected. As several reports have implicated FasL reverse signaling in the regulation of T cell expansion and activation, proliferation of lymphocytes isolated from FasL Delta Intra and wildtype mice in response to antigen receptor stimulation was investigated. Using CFSE dilution assays it could be demonstrated that the proliferative response of CD4+ T cells, CD8+ T cells and of B cells was enhanced in the absence of the FasL ICD. Interestingly, this effect was most pronounced in B cells and could only be detected in CD4+ T cells after depletion of CD4+CD25+ regulatory T cells. To our Summary knowledge, this is the first time that FasL reverse signaling has been demonstrated in B cells. In a series of experiments, the activation of several pathways that are known to play important roles in signal-transmission initiated upon antigen receptor triggering was assessed. As a molecular correlate for the observed enhancement of activation-induced proliferation, Extracellular signal regulated kinase (ERK1/2) phosphorylation was significantly increased in FasL Delta Intra mice following antigen receptor crosslinking. Surprisingly, B cell stimulation lead to a comparable extent of activating phosphorylations on S38 in c-Raf and S218/S222 in MEK1/2 in cells isolated from wildtype and FasL Delta Intra mice, indicating that Mitogen activated protein kinases (MAPKs) upstream of ERK1/2 (Raf-1 and MEK1/2) apparently do not contribute to the differential regulation of ERK1/2. Experiments in which activation-induced Akt phosphorylation (S473) was quantified also did not suggest a participation of Phosphoinositol specific kinase 3 (PI3K)/Akt signals in this process. Instead, further characterization of the upstream pathway revealed an involvement of Phospholipase C gamma (PLC gamma) and Protein kinase C (PKC) signals in FasL-dependent ERK1/2- regulation. Previous studies in our group revealed a Notch-like processing of FasL, resulting in the transcriptional regulation of a reporter gene. Furthermore, an interaction of the FasL ICD with the transcription factor Lymphoid-enhancer binding factor-1 (Lef-1) that affected Lef-1-dependent reporter gene transcription could be demonstrated. Therefore, a molecular analysis of activated lymphocytes was performed to identify FasL reverse signaling target genes. The differential expression of promising candidates was verified by quantitative real-time PCR (qRT-PCR), which showed that the transcription of genes associated with lymphocyte proliferation and activation was increased in FasL Delta Intra mice compared to wildtype mice. Interestingly, an extensive regulation of Lef-1-dependent Wnt/beta-Catenin signalingrelated genes was found. Lef-1 mRNA (RT-PCR) and protein (intracellular FACS staining) could be detected in mature B cells, suggesting the possibility of FasL ICD-mediated inhibition of Lef-1-dependent gene expression in these cells, initiated by Notch-like processing of FasL. To investigate the consequences of FasL reverse signaling in vivo, a potential participation of the FasL ICD in the regulation of immune responses upon various challenges was analyzed. In experiments in which thymocyte proliferation or the expansion of antigen-specific T cells following a challenge with the superantigen Staphylococcus enterotoxin B (SEB), with Lymphocytic choriomeningitis virus (LCMV) or with Listeria monocytogenes were investigated, comparable results were obtained with wildtype and FasL Delta Intra mice. Likewise, the recruitment of neutrophils in a thioglycollate-induced model of peritonitis was not affected by deletion of the FasL ICD. These findings might reflect regulatory mechanisms operating in vivo, such as control exerted by regulatory T cells. Along these lines, proliferative differences in CD4+ T cells could only be detected ex vivo after depletion of CD4+CD25+ regulatory T cells. Furthermore, several in vitro studies indicate that retrograde FasL signals can be observed under conditions of suboptimal lymphocyte stimulation, but not when the TCR is optimally stimulated. Therefore, the potent initiation of antigen receptor signaling by stimuli like SEB or LCMV might have masked inhibitory FasL reverse signaling in these experiments. In agreement with the observed hyperactivation of lymphocytes in the absence of the ICD ex vivo, the increase in germinal center B cells (GCs) following immunization with the hapten 3-hydroxy 4-nitrophenylacetyl (NP) and the number of antibody-secreting PCs was significantly higher in FasL Delta Intra mice. The larger quantity of PCs correlated with increased titers of NP-binding, i.e. antigen-specific, IgM and IgG1 antibodies in the serum of FasL Delta Intra mice after immunization. These data suggest that FasL reverse signaling exerts immunmodulatory functions. Supporting this notion, a model of Ovalbumin-induced allergic airway inflammation revealed an involvement of retrograde FasL-signals in the recruitment of immune effector cells into the lung and in the activation of T cells following exposure of mice to Ovalbumin. Together, our ex vivo and in vivo findings based on endogenous FasL protein levels demonstrate that FasL ICD-mediated reverse signaling is a negative modulator of certain immune responses. It is tempting to speculate that FasL reverse signaling might be a fine-tuning mechanism to prevent autoimmune diseases, a theory which will be tested in adequate mouse models in the future.
Drought stress is one of the major abiotic factors diminishing crop productivity world wide. In the course of climate change, regions which already experience dry seasons nowadays will suffer from elongated drought periods and water shortage. These climatic changes will not only have an impact on the regional flora and fauna but also on the people inhabiting these areas. It is therefore of great importance to understand the reactions of plants to drought stress to help breeding and biotechnological approaches for the benefit of new robust cereal cultures growing under low water regimes. In this dissertation four grasses of the genus Panicum, P. bisulcatum (C3), P. laetum, P. miliaceum and P. turgidum (all C4 NAD-ME) were subjected to drought stress. The plants diverse reactions were investigated on a physiological as well as on a molecular level to deepen the understanding of drought stress responses. Drought stress was imposed for a species-specific period until a relative leaf water content (RWC) of ~50 % was reached in each grass. Physiological measurements were conducted on leaves with a RWC of ~50 % investigating chlorophyll a fluorescence parameters with a Plant Efficiency Analyzer (PEA) and gas exchange parameters like the photosynthesis rate and stomatal conductance with a Gas Fluorescence Chamber (GFS-3000). Subsequent molecular analysis were conducted on leaf samples taken (RWC = 50 %) analysing different proteins and the transcriptome of the Panicum species. The physiological measurements revealed a higher photosynthesis rate for the C4 grasses under drought stress with no significant differences between the C4 species. Also the water use efficiency was significantly higher in the C4 species in comparison to the C3 species independent from the water regime supporting results from the literature. The chlorophyll a measurements revealed the strongest adaptation to water shortage in the C4 species P. turgidum followed by the C3 species P. bisulcatum. It has been shown before (GHANNOUM 2009) that the C4 photosynthesis apparatus is more prone to drought stress than the C3 apparatus – despite the higher water use efficiency. Results also suggested that the great adaptation of P. turgidum to drought stress arose from its ability to recover from drought stress (all JIP test parameters showed no significant differences between control and recovery samples). The additional down-regulation of PS II but not of PS I under drought stress also helped the plant to endure times of water shortage and facilitated the recovery when water was available again. Protein analyses on the content of PEPC, OEC and RubisCO (LSU and SSU) revealed no changes. Dehydrin 1 in contrast was strongly up-regulated under drought stress and Summary 108 recovery in all four Panicum species. The stable content of the OEC protein was therefore not the catalyst of rising K peaks measured by chlorophyll a fluorescence and a reduced OEC activity was supposed. Transcriptomic analyses revealed a myriad of differentially regulated tags. Due to unsequenced genomes, tags could only be partially (8 % maximum for P. turgidum) annotated to their specific genes. Diverse methods were therefore used to annotate the most highly regulated tags to their genes and their products. Special emphasis was put on the regulation of five gene products confirming the regulation schemata from the HT-SuperSAGE analyses. Interestingly one protein – the NCED1 – was down-regulated under stress conditions, in contrast to results from the literature. It is therefore of great importance to investigate longer lasting drought to understand the full range of drought stress adaptation. Future genome sequencing projects might also include the Panicum species investigated in this dissertation and important gene candidates with no hits (maybe completely new to the research community) might help breeding and biotechnology approaches to produce more drought resistant crop species.
Ribosome biogenesis is best understood in the yeast Saccharomyces cerevisiae. In human or mammalian ribosome biogenesis, it has been shown that basic principles are conserved to yeast, but additional features have been reported. Our understanding about the interplay between proteins and RNA in human ribosome biogenesis is far from complete.
The present study focused on the analysis of the human ribosome biogenesis co-factors PWP2, EMG1 and Exportin 5 (XPO5) to understand the degree of conservation of ribosome biogenesis. The proteins were characterized in respect to their localization and interaction partners. For the early 90S co-factor, PWP2, it was possible to pull down and identify the human UTP-B complex with MALDI mass spectrometry. Besides the orthologues of the members of this complex known in yeast (TBL3, WDR3, WDR36, UTP6, UTP18), the human UTP-B complex is not only conserved from yeast to humans, but contains also additional components, like the DEAD-box RNA helicase DDX21, which lacks a yeast orthologue. DDX21 was localized to the nucleus, assembled to the native UTP-B complex and co-precipitated also with other UTP-B complex members, presumably extending the functions of this complex in ribosome biogenesis.
This phenomenon was also observed for the 90S co-factor EMG1, an RNA methyltransferase, whose mutant form causes the Bowen-Conradi syndrome, if aspartic acid is mutated to glycine at position 86. This study revealed that the mutant, EMG1-D86G, clearly lost its nucleolar localization and co-precipitated to histones for unknown reasons.
A participation of the nuclear export receptor XPO5 in human ribosome biogenesis was shown in this study. Pulldown analysis, sucrose density gradients and UV crosslinking and analysis of cDNAs of XPO5 revealed the involvement of XPO5 in pre-60S subunit maturation. Moreover, besides the known pre-miRNAs and tRNAs as substrates for nuclear export, XPO5 crosslinked to snoRNAs. XPO5 was further demonstrated to interact with the miRNA Let-7a, which has an important regulatory function for MYC, a transcription factor required for ribosome biogenesis.
All results support a role of these proteins in human ribosome biogenesis and therefore it seems that the biogenesis of ribosomes in human cells requires additional components, like DDX21 and XPO5.
Fossils are often anatomically and functionally compared to extant model taxa such as Pan, Gorilla, Pongo and modern Homo sapiens to put the respective fossils into the (taxonomical) context of human evolution. Therefore, knowledge of extant hominid anatomy is necessary as well as knowledge of which traits differ between sexes, populations, (sub-)species and taxa, and whether these differences are pronounced enough to separate respective groups. Dental and mandibular structures have been of particular interest in many paleoanthropological studies, simply due to the fact that these morphological structures are most abundant in the human fossil record.
Various studies have addressed questions regarding taxonomy, variation and sexual dimorphism of hominid taxa with regard to dental and mandibular size. Tooth size, however, has almost exclusively referred to crown size, with little focus on root size. The focus on tooth crowns is partly due to roots being embedded in mandibular bone which makes access difficult. With the help of micro-computed tomography (μCT) it is now possible to render virtual 3D models of dental roots and measure these models without harming the original specimens. In addition, measurements are much more precise using μCT data than previous techniques such as 2D x-rays. The present study used 3D models of 231 (first, second and third) molars and 80 mandibles of 53 Pan troglodytes verus (consisting of individuals form the Tai and Liberia populations), 14 Gorilla sp. and 13 Pongo sp. individuals to investigate molar and mandibular sizes within, and between, taxa and populations with regard to sexual dimorphism, variability and taxonomical value. Molar root size was assessed by applying 7 measurements to each molar. Mandibular size was investigated using three different measurements: overall mandibular size, mandibular robusticity (at each molar position) and 15 linear measurements. Overall mandibular size and root measurements were used to investigate the dental and mandibular size relationship. Furthermore, based on data acquired from great apes, how well fossil mandibles (including their dentition) of Australopithecus africanus, Paranthropus sp. and Homo sp. match one or multiple extant hominid taxa was examined Overall, molar root and mandibular metrics are suitable to differentiate between sexes, populations and taxa. Investigation of 40 (21 molar and 19 mandibular) different measure ments resulted in five common characteristics among Pan, Gorilla and Pongo only: firstly, molar root size sequence in root volume and root surface area (M3 < M1 < M2). Secondly, M2 as the molar with the largest cervical area, root volume, root surface area and mesial root lengths and thirdly, mandibular robusticity is larger in females than in males, yet the difference is not signifficant. Fourthly, mandibular length and premolar width are sexually dimorphic and fifthly, the best factors to discriminate between taxa are bicondyle width and molar root length. There is no generalized answer to the question which molar and/or measurement (dental or mandibular) is best to discriminate between sex or taxa in extant hominids. Moreover, size relationships differ among taxa, depending on the measurement. The overall trend, however, is that Pan is the taxa with the smallest, and Gorilla the largest, mean values. Among Pan populations, Liberian chimpanzees tend to have larger average values compared to Tai chimpanzees, with the exception of mandibular robusticity. The highest percentage of sexual dimorphic measurements is found in Pongo, yet only half of the measurements are statistically different between sexes. African apes are less sexually dimorphic compared to Pongo, and surprisingly, Gorilla is only slightly more dimorphic than Pan. The study also shows that statements and conclusions relating to \mandibular size" should not be generalized: whereas male and female Pongo do not differ significantly in overall mandibular size, they do differ in linear mandibular measurements. Moreover, Gorilla has the overall largest mandible, yet robusticity is higher in Pan, as are some linear measurements. Sexual dimorphism in overall mandibular size does not seem to reflect body mass dimorphism, whereas mandibular size appears to be related to body mass. The same was previously proposed for mandibular robusticity, yet Pan, the smallest taxa, has the most robust mandibular corpus (> Gorilla > Pongo). A substantial amount of molar measurements that positively correlate with (overall) mandibular size was found, but in African apes only. This contrasts with former studies which found no, or weak, correlations between dental and mandibular sizes. Given that the percentage of correlation is highest in Pan, and not present in Pongo, it is proposed that small jaws feature small teeth, rather than large jaws feature large teeth. This proposition assumes a size-threshold from which, when reached, dental and mandibular sizes no longer correlate, as has been previously proposed for the relationship between canine size and mandibular breadth. This assumption is further supported by the fact that the smaller and more robust Tai population shows more significant correlation compared to the less robust and larger Liberia population. Results show that fossil metrics are similar to one or multiple extant hominid taxa, depending on the measurement (dental or mandibular) used for comparison. Subsequently, the assignment to a specific sex depends on the earlier selected extant model taxa. Therefore the study questions whether choosing one model taxa for one fossil, or taxonomical group, is advisable. This study is the first to extensively investigate molar root size in extant hominids and to broadly describe differences in molar root sizes among and between taxa and therefore provides a solid database for future studies. The same applies to mandibular robusticity which has not been investigated as systematically or to such a great extent as in this work. The study specifically shows how complex the search for taxa or sex differentiating molar root and/or mandibular measurements is. Subsequently it shows that generalizations in relation to taxonomical values and statements about sexual dimorphism can be misleading.
In addition, the study contributes to the understanding of intra- and inter-population differences within Pan torglodytes verus. Furthermore, it could be demonstrated that results of a subspecies sample very likely depend on the sample composition, i.e. whether the sample consists of individuals from one or more populations. This study serves as a database for further studies investigating molar root sizes in great apes, whether these studies are investigating various relationships between taxa, population or sex, or as database to investigate functional adaptations or to examine mandibular robusticity and molar root relationships.
Rhythmic changes in environmental lighting conditions have ever been the most reliable environmental cue for life on earth. Nature has therefore selected a genetically encrypted endogenous clock very early in evolution, as it provided cells and subsequently organisms with the ability to anticipate persevering periods of light and darkness. Rhythm generation within the mammalian circadian system is achieved by clock genes and their protein products. The mammalian endogenous master clock, which synchronizes the body to environmental time, is located in the suprachiasmatic nucleus (SCN) of the hypothalamus. As an integral part of the time-coding system, the pineal gland serves the need to tune the body to the temporal environment by the rhythmic nocturnal synthesis and immediate release of the hormone melatonin. In contrast to the transcriptional regulation of melatonin synthesis in rodents, a post-translational shaping is indicated in the human pineal gland. Another important mediator of circadian time and seasonality to the body is the pituitary gland. The aim of this work was to elucidate regulation of melatonin synthesis in the human pineal gland. Furthermore, presence and regulation of clock genes in the human pineal and pituitary gland, and in the SCN were analyzed. Therefore, human tissue, taken from regular autopsies, was analyzed simultaneously for different parameters involved in melatonin biosynthesis and circadian rhythm generation. Presented data demonstrate that post-mortem brain tissue can be used to detect the remnant profile of pre-mortem adaptive changes in neuronal activity. In particular, our results give strong experimental support for the idea that transcriptional mechanisms are not dominant for the generation of rhythmic melatonin synthesis in the human pineal gland. Together with data obtained for clock genes and their protein products in the pituitary, data presented here offer 1) a new working hypothesis for post-translational regulation of melatonin biosynthesis in the human pineal gland, and 2) a novel twist in the molecular competence of clock gene proteins, achieved by nucleo-cytoplasmic shuttling in neuronal and neuroendocrine human tissue. Furthermore, in this study, oscillations in abundance of clock gene proteins were demonstrated for the first time in the human SCN.
Inhaltsverzeichnis Liste der wissenschaftlichen Beiträge .................................................................................. III Inhaltsverzeichnis ..............................................................................................................IV Abbildungsverzeichnis I List of Figures ................................................................................ VII Tabellenverzeichnis I List of Tables ..................................................................................... VIII Abkürzungsverzeichnis .......................................................................................................... IX 1 Einleitung 1.1 Problemstellung .............................................................................................................. 1 1.2 Einordnung und Ergebnisse der wissenschaftlichen Beiträge ....................................... 3 Literaturverzeichnis ................................................................................................................ 9 2 Langes Leben und Wohlstand im Alter: Ein Überblick über die finanzwirtschaftlichen Alternativen zur Ausgestaltung des Ruhestandes ... 10 2.1 Einführung .................................................................................................................... 10 2.2 Produktalternativen fiir die Ausgestaltung der Entnahmephase .................................. 12 2.2.1 Leibrenten .......................................................................................................... 12 2.2.1.1 Charakteristika von Leibrenten und deren historische Entwicklung .... 12 2.2.1.2 Leibrentenmarkt und -produkte in Deutschland ................................... 15 2.2.1.3 Determinanten von Leibrentenprämien ................................................ 22 2.2.2 Entnahmepläne ................................................................................................... 28 2.2.2.1 Charakteristika von Entnahmeplänen ................................................... 28 2.2.2.2 Entnahmepläne als Instrument der Ruhestandsplanung ....................... 31 2.2.2.3 Leibrenten vs. Entnahmepläne .............................................................. 33 2.3 Forschungsergebnisse zur Ausgestaltung der Entnahmephase .................................... 36 2.3.1 Einleitende Bemerkungen .................................................................................. 36 2.3.2 Positive Literatur ................................................................................................ 37 2.3.2.1 Theoretische Arbeiten zur Bedeutung von Leibrenten ......................... 37 2.3.2.2 Vererbungsmotive als Erklärungsansatz fiir geringe Nachfrage nach Leibrenten ... 39 2.3.2.3 Kosten als Erklärungsansatz fiir geringe Nachfrage nach Leibrenten .. 42 2.3.2.4 Weitere Erklärungsansätze rur geringe Nachfrage nach Leibrenten .... 44 2.3.3 Normative Literatur ............................................................................................ 47 2.3.3.1 Untersuchungen zu reinen Entnahmeplänen ......................................... 47 2.3.3.2 Untersuchung von Entnahmeplänen unter Berücksichtigung von Leibrenten ..... 50 2.3.4 Sonstige Arbeiten ............................................................................................... 56 2.4 Schlussbetrachtung ....................................................................................................... 57 Anhang A: Berechnung von Leibrentenprämien ................................................................. 59 Anhang B: Abbildung der Biometrie ................................................................................... 62 Literaturverzeichnis .............................................................................................................. 67 3 Betting on Death and Capital Markets in Retirement: A Shortfall Risk Analysis of Life Annuities versus Phased Withdrawal Plans... 76 3.1 Introduction .................................................................................................................. 76 3.2 The Case of Phased Withdrawal .................................................................................. 79 3.2.1 Withdrawal Plans with Fixed Benefits ............................................................... 80 3.2.2 Phased Withdrawal Rules with Variable Benefits ............ : ................................ 80 3.3 Risk and Reward Analysis of Phased Withdrawal Plans Conditional on Survival... ... 82 3.3.1 Research Design ................................................................................................. 82 3.3.2 Analysis of Expected Benefits ........................................................................... 84 3.3.3 Shortfall Risk Analysis ...................................................................................... 86 3.3.4 Analysis of Expected Bequests .......................................................................... 89 3.4 Risk-Minimizing Phased Withdrawal Strategies ......................................................... 90 3.4.1 Optimized Withdrawal Rules in a Risk-Return Context... ................................. 90 3.4.2 Comparative Results: Annuity versus Phased Withdrawal Plans ...................... 92 3.4.3 Phased Withdrawal Plans with Mandatory Deferred Annuities ........................ 97 3.4.4 Comparative Results ........................................................................................ 100 3.5 Summary and concluding remarks ............................................................................. 101 Appendix A: Determining Annuity Benefits ..................................................................... 104 Appendix B: Determining Expected Benefits, Expected Bequest and the Risk of a Consumption Shortfall for Phased Withdrawal Plans with given Benefit-to-Wealth Ratios .......................................................................................................................... 105 References .......................................................................................................................... 107 4 Leistungsgarantien in der Auszahlphase von investmentbasierten Altersvorsorgeverträgen: Entwicklung eines konditionalen Eigenkapitalsystems und Analyse seiner ökonomischen Implikationen ... 111 4.1 Einführung .................................................................................................................. 111 4.2 Altersvorsorgeverträge in der Auszahlphase ............................................................. 114 4.2.1 Gesetzliche Regelungen ................................................................................... 114 4.2.2 Entnahmepläne vs. Leibrenten ......................................................................... 115 4.3 Konditionales Eigenkapitalsystem fiir Altersvorsorgeverträge ................................. 117 4.3.1 Einleitende Vorbemerkungen ........................................................................... 117 4.3.2 Konzeptionelle Grundlagen eines konditionalen EK-Systems ........................ 119 4.3.3 Deduktion eines Eigenkapitalsystems fiir die Entnahmephase ........................ 121 4.4 Eigenkapitalanforderungen in der Entnahmephase .................................................... 126 4.4.1 Vorbemerkungen zur empirischen Untersuchung ............................................ 126 4.4.2 Ex post Analyse von Altersvorsorge-Entnahmeplänen ................................... 128 4.4.3 Untersuchung der Eigenkapitalanforderungen im ex ante Kontext ................. 132 4.4.3.1 Untersuchungsansatz und Modellannahmen ....................................... 132 4.4.3.2 Analysen auf Einzelvertragsbasis ....................................................... 135 4.4.3.3 Analysen im Rahmen eines Geschäfts- und Absatzmodells ............... 140 4.4.3.4 Robustheitsanalysen ............................................................................ 145 4.5 Schlussbetrachtung ..................................................................................................... 147 Literaturverzeichnis ............................................................................................................ 149 Lebenslauf ............................................................................................................................. 151 Ehrenwörtliche Erklärung: ................................................................................................. 154
Aortic valve (AV) and root replacement with composite graft and re-implantation of coronary arteries described first by Bentall and de Bono in 1968, is considered as a standard operation for treatment of different pathologies of the AV and aortic root. In centres where aortic valve and root repair techniques and Ross operation are well established, generally severely diseased patients remain indicated for this procedure. The aim of this study was to evaluate the early and long-term outcomes after Bentall-De Bono (BD) procedures in high-risk population with complex pathologies and multiple comorbidities.
Between 2005 and 2018, a total of 273 consecutive patients (median age 66 years; 23 % female) underwent AV and root replacement with composite-graft in so called button technique. We divided our population in the following groups: 1. acute type A aortic dissection group (ATAAD) (n = 48), 2. endocarditis group (n = 99) and 3. all other pathologies group (n = 126). The surgery has been per- formed emergent/urgent in 131 patients (49 %) and in 109 cases (40%) as a reoperation. Concomitant surgery was required in 97 patients (58%) and 167 pa- tients (61%) received a biological composite-graft.
Follow-up was completed in 96% (10 patients lost to follow-up) with a mean of 8.6 years (range 0.1-15.7 years), counting a total of 1450 patient-years. Thirty- day mortality was 17% (46 patients). The overall estimated survival in 5 and 10 years was 64% ± 3%) and 46% ±4 %). Group comparison showed a significant difference in favour of patient from the dissection group (p = 0.008). Implantation of a biological valve graft was associated with lower survival probability (p < 0.001). There was no significant difference in the freedom of reoperation rate between the groups. The same applies for freedom of postoperative endocarditis, thromboembolic events, and aortic prosthesis dysfunction. According to the uni- variate and multivariate logistic regression analysis primarily postoperative neu- rological dysfunction (OR 5.45), hypertension (OR 4.8) peripheral artery disease (OR 4.4), re-exploration for bleeding (OR 3.37) and postoperative renal replace- ment therapy (OR 3.09) were identified as leading predictors of mortality.
In conclusion, the BD operation can be performed with acceptable short- and long-term results in high-risk patients with complex aortic pathologies in a centre with well-established AV repair and Ross operation program.
The crude oil constituents benzene, toluene, ethylbenzene, and the three xylene isomers (BTEX) are the dominating groundwater contaminants originating from surface spill accidents by oil production facilities and with gasoline and jet fuel. Thereby BTEX posing a threat to the world´s scarce drinking water resources due to their water solubility and toxicity. An active remediation cleanup involving a BTEX event proves not only to be very expensive but almost impossible when it comes to the complete removal of contaminants from the subsurface. A favoured and common practice is combining an active remediation process focussing on the source of contamination coupled together with the monitoring of the residual contamination in the subsurface (monitored natural attenuation; MNA). MNA include all naturally occuring biological, chemical and physical processes in the subsurface. The general goal of this work was to improve the knowledge of biodegradation of aromatic hydrocarbons under anaerobic conditions in groundwater. For this groundwater and soil at the former military underground storage tank (UST) site Schäferhof – Süd near Nienburg/Weser (Niedersachsen, Germany) were sampled and analysed. The investigations were done in collaboration of the Umweltbundesamt, the universitys of Frankfurt and Bremen and the alphacon GmbH Ganderkesee. To investigate the extent of groundwater contamination, the terminal electron acceptor processes (TEAPs) and the metabolites of BTEX degradation in groundwater, six observation wells were sampled at regular intervals between January 2002 and September 2004. The wells were positioned in order to cover the upstream, the source area and the downstream of the presumed contamination source. Additionally, vertical sediment profiles were sampled and investigated with respect to spreading and concentration of BTEX in the subsurface. A large residual contamination involving BTEX is present in soil and groundwater at the studied locality. Maximum BTEX concentration values of 17 mg/kg were recorded in analysing sediment in the unsaturated zone. In the capillary fringe, values of 450 mg/kg were recorded (October 2004) and in the saturated zone maximum values of 6.7 mg/kg BTEX were detected. The groundwater samples indicate increasing BTEX concentrations in the groundwater flow direction (from 532 µg/l up to 3300 µg/l (mean values)). Biodegradation of aromatic hydrocarbons under anaerobic conditions in the sub surface at contaminated sites is characterised by generation of metabolites. From the monoaromatic hydrocarbons BTEX metabolites such as benzoic acid (BA) and the methylated homologs and C1-and C2-benzyl-succinic acids (BSA) are generated as intermediates. A solid-phase extraction method based on octadecyl-bonded silica sorbent has been developed to concentrate such metabolite compounds from water samples followed by derivatization and gas chromatography/mass spectrometry (GC/MS) of the extracts. The recovery rate range between 75 and 97%. The method detection limit was 0.8 µg/l. Organic acids were identified as metabolic by-products of biodegradation. Benzoic acid, C1-, C2- and C3-benzoic acid were determined in all contaminated wells with considerable concentrations. Furthermore, the depletion of the dominant terminal electron acceptors (TEAs) oxygen, nitrate, and sulphate and the production of dissolved ferrous iron and methane in groundwater indicate biological mediated processes in the plume evidently proving the occurrence of NA. A large overlap of different redox zones at the studied part of the plume has been observed. A important finding in this study is the strong influence of groundwater level fluctuations on the BTEX concentration in groundwater. A very dry summer in 2003 was recorded during the monitoring period, resulting on site in a drop of the groundwater level to 1.7 m and a concomitant increase of BTEX concentrations from 240 µg/l to 1300 µg/l. The groundwater level fluctuations, natural degradation and retention processes essentially influence BTEX concentrations in the groundwater. Groundwater level fluctuations have by far a stronger influence than the influence of biological degradation. Increasing BTEX concentrations are hence not a consequence of limited biological degradation. Another part of the study was to observe the isotopic fractionation of the electron acceptor Fe(III), due to biologically mediated reduction of Fe(III) to the watersoluble Fe(II) at the site and first field data are presented. Both groundwater and sediment samples were analysed with respect to their Fe isotopic compositions using high mass resolution Multi Collector-Inductively Coupled Plasma-Mass Spectrometry (MC-ICP-MS). The delta56Fe -values of groundwater samples taken from observation wells located downstream of the source area were isotopically lighter than delta56Fe -values obtained from groundwater in the uncontaminated well. The Fe isotopic composition of most parts of the sediment profile was similar to the Fe isotopic composition of uncontaminated groundwater. Thus, a significant iron isotope fractionation can be observed between sediment and groundwater downstream of the BTEX contamination.
An investigation of photoelectron angular distributions and circular dichroism of chiral molecules
(2021)
The present work demonstrates the capability of several type of molecular frame photoelectron angular distributions (MFPADs) and their linked chiroptical phenomenon the photoelectron circular dichroism (PECD) to map in great detail the molecular geometry of polyatomic chiral molecules as a function of photoelectron energy. To investigate the influence of the molecular potential on the MFPADs, two chiral molecules were selected, namely 2-(methyl)oxirane (C3H6O, MOx, m = 58,08 uma) and 2-(trifluoromethyl)oxirane (C3H3F3O, TFMOx, m = 112,03 uma). The two molecules differs in one substitutional group and share an oxirane group where the O(1s) electron was directly photoionized with the use of synchrotron radiation in the soft X-ray regime. The direct photoionization of the K-shell electron is well localized in the molecule and it induces the ejection of two or more electrons; the excited system separates into several charged (and eventually neutral) fragments which undergo Coulomb explosion due to their charges. The electrons and the fragments were detected using the COLd Target Recoil Ion Momentum Spectroscopy (COLTRIMS) and the momentum vectors calculated for each fragment belonging from a single ionization. The former method gives the possibility to post-orient molecules in space, giving access to the molecular frame, thus the MFPAD and its related PECD for multiple light propagation direction.
Stereochemistry (from the Greek στερεο- stereo- meaning solid) refers to chemistry in three dimensions. Since most molecules show a three-dimensional structure (3D), stereochemistry pervades all fields of chemistry and biology, and it is an essential point of view for the understanding of chemical structure, molecular dynamics and molecular reactions. The understanding of the chemistry of life is tightly bounded with major discoveries in stereochemistry, which triggered tremendous technical advancements, making it a flourishing field of research since its revolutionary introduction in late 18th century. In chemistry, chirality is a brunch of stereochemistry which focuses on objects with the peculiar geometrical property of not being superimposable to their mirror-images. The word chirality is derived from the Greek χειρ for “hand”, and the first use of this term in chemistry is usually attributed to Lord Kelvin who called during a lecture at the Oxford University Junior Scientific Club in 1893 “any geometrical figure, or group of points, “chiral”, and say that it has chirality if its image in a plane mirror, ideally realized, cannot be brought to coincide with itself.”. Although the latter is usually considered as the birth of the word chirality, the concept underlying it was already present in several fields of science (above all mathematics), already proving the already multidisciplinary relevance of chirality across many field of science and beyond. Nature shows great examples of chiral symmetry on all scales. Empirically, it is possible to observe it at macroscopic scale (e.g. distribution of rotations of galaxies), down to the microscopic scale (e.g. structure of some plankton species), but it is at the molecular level where the number gets remarkable: most of the pharmaceutical drugs, food fragrances, pheromones, enzymes, amino acids and DNA molecules, in fact, are chiral. Moreover, the concept of chirality goes far beyond the mere spatial symmetry of objects being crucially entangled with the fundamental properties of physical forces in nature. The symmetry breaking, namely the different physical behaviour of a two chiral systems upon the same stimuli, is considered to be one of the best explanation for the long standing questions of homochirality in biological life, and ultimately to the chemical origin of life on Earth as we know it. Our organism shows high enantio-selectivity towards specific compounds ranging from drugs, to fragrances. Over 800 odour molecules commonly used in food and fragrance industries have been identified as chiral and their enantiomeric forms are perceived to have very different smells, as the well-know example of D- and L- limonene. Similarly, responses to pharmaceuticals drugs can be enantiomer specific, and in fact about 60 % the drugs currently on the market are chiral compounds, and nearly 90 % of them are sold as racemates. The same degree of enantio-selectivity is observed in the communications systems of plants and insects. Plants produce lipophilic liquids with high vapour pressure called plant volatiles (PVs) which are synthesized via different enzymes called tarpene synthases that are usually chiral. Chiral molecules and chiral effects have a strong impact on all the fields of science with exciting developments ranging from stereo-selective synthesis based on heterogeneous enantioselective catalysis, to optoelctronics, to photochemical asymmetric synthesis, and chiral surface science, just to cite a few.
Chiral molecules come in two forms called enantiomers. Their almost identical chemical and physical properties continue to pose technical challenges concerning the resolution of racemic mixtures, the determination of the enantiomeric excess, and the direct determination of the absolute configuration of an enantiomer. ...
Previous studies suggest that the application of Controlled Language (CL) rules can significantly improve the readability, consistency, and machine-translatability of source text. One of the justifications for the application of CL rules is that they can have a similar impact on several target languages by reducing the post-editing effort required to bring Machine Translation (Ml’) output to acceptable quality. In certain situations, however, post-editing services may not always be a viable solution. Web-based information is often expected to be made available in real-time to ensure that its access is not restricted to certain users based on their locale. Uncertainties remain with regard to the actual usefulness of MT output for such users, as no empirical study has examined the impact of CL rules on the usefulness, comprehensibility, and acceptability of MT technical documents from a Web user's perspective. In this study, a two-phase approach is used to determine whether Controlled English rules can have a significant impact on these three variables. First, individual CL rules are evaluated within an experimental environment, which is loosely based on a test suite.Two documents are then published and subject to a randomised evaluation within the framework of an online experiment using a customer satisfaction questionnaire. The findings indicate that a limited number of CL rules have a similar impact on the comprehensibility of French and German output at the segment level. The results of the online experiment show that the application of certain CL rules has the potential to significantly improve the comprehensibility of German MT technical documentation. Our findings also show that the introduction of CL rules did not lead to any significant improvement of the comprehensibility, usefulness, and acceptability of French MT technical documentation.
In this thesis the first fully integrated Boltzmann+hydrodynamics approach to relativistic heavy ion reactions has been developed. After a short introduction that motivates the study of heavy ion reactions as the tool to get insights about the QCD phase diagram, the most important theoretical approaches to describe the system are reviewed. To model the dynamical evolution of the collective system assuming local thermal equilibrium ideal hydrodynamics seems to be a good tool. Nowadays, the development of either viscous hydrodynamic codes or hybrid approaches is favoured. For the microscopic description of the hadronic as well as the partonic stage of the evolution transport approaches have beeen successfully applied, since they generate the full phse-space dynamics of all the particles. The hadron-string transport approach that this work is based on is the Ultra-relativistic Quantum Molecular Dynamics (UrQMD) approach. It constitutes an effective solution of the relativistic Boltzmann equation and is restricted to binary collisions of the propagated hadrons. Therefore, the Boltzmann equation and the basic assumptions of this model are introduced. Furthermore, predictions for the charged particle multiplicities at LHC energies are made. The next step is the development of a new framework to calculate the baryon number density in a transport approach. Time evolutions of the net baryon number and the quark density have been calculated at AGS, SPS and RHIC energies and the new approach leads to reasonable results over the whole energy range. Studies of phase diagram trajectories using hydrodynamics are performed as a first move into the direction of the development of the hybrid approach. The hybrid approach that has been developed as the main part of this thesis is based on the UrQMD transport approach with an intermediate hydrodynamical evolution for the hot and dense stage of the collision. The initial energy and baryon number density distributions are not smooth and not symmetric in any direction and the initial velocity profiles are non-trivial since they are generated by the non-equilibrium transport approach. The fulll (3+1) dimensional ideal relativistic one fluid dynamics evolution is solved using the SHASTA algorithm. For the present work, three different equations of state have been used, namely a hadron gas equation of state without a QGP phase transition, a chiral EoS and a bag model EoS including a strong first order phase transition. For the freeze-out transition from hydrodynamics to the cascade calculation two different set-ups are employed. Either an in the computational frame isochronous freeze-out or an gradual freeze-out that mimics an iso-eigentime criterion. The particle vectors are generated by Monte Carlo methods according to the Cooper-Frye formula and UrQMD takes care of the final decoupling procedure of the particles. The parameter dependences of the model are investigated and the time evolution of different quantities is explored. The final pion and proton multiplicities are lower in the hybrid model calculation due to the isentropic hydrodynamic expansion while the yields for strange particles are enhanced due to the local equilibrium in the hydrodynamic evolution. The elliptic flow values at SPS energies are shown to be in line with an ideal hydrodynamic evolution if a proper initial state is used and the final freeze-out proceeds gradually. The hybrid model calculation is able to reproduce the experimentally measured integrated as well as transverse momentum dependent $v_2$ values for charged particles. The multiplicity and mean transverse mass excitation function is calculated for pions, protons and kaons in the energy range from $E_{\rm lab}=2-160A~$GeV. It is observed that the different freeze-out procedures have almost as much influence on the mean transverse mass excitation function as the equation of state. The experimentally observed step-like behaviour of the mean transverse mass excitation function is only reproduced, if a first order phase transition with a large latent heat is applied or the EoS is effectively softened due to non-equilibrium effects in the hadronic transport calculation. The HBT correlation of the negatively charged pion source created in central Pb+Pb collisions at SPS energies are investigated with the hybrid model. It has been found that the latent heat influences the emission of particles visibly and hence the HBT radii of the pion source. The final hadronic interactions after the hydrodynamic freeze-out are very important for the HBT correlation since a large amount of collisions and decays still takes place during this period.