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Our earth, which is a tiny in the infinity of the universe, is getting to be a difficult place to live in. Environmental problems such as pollution and global warming on one side and various disagreements and wars in every corner of the world on the other side, make most of the people unhappy and cause suffering. Everybody living in this world regardless of his or her ethnicity or religion has got share of responsibility to make this earth a place to live in peace and tranquillity. Within this framework, the most important thing in the world is that people with different languages and religious denominations should understand each other better to achieve the goal of creating more secure and peaceful environment for humanity. To make a contribution to this endeavour the Qur’anic guidelines which appear to open a sound way and strengthen the ground of a dialogue between celestial religions should be elucidated.
Contrastive focus
(2007)
The article puts forward a discourse-pragmatic approach to the notoriously evasive phenomena of contrastivity and emphasis. It is argued that occurrences of focus that are treated in terms of "contrastive focus", "kontrast" (Vallduví & Vilkuna 1998) or "identificational focus" (É. Kiss 1998) in the literature should not be analyzed in familiar semantic terms like introduction of alternatives or exhaustivity. Rather, an adequate analysis must take into account discourse-pragmatic notions like hearer expectation or discourse expectability of the focused content in a given discourse situation. The less expected a given content is judged to be for the hearer, relative to the Common Ground, the more likely a speaker is to mark this content by means of special grammatical devices, giving rise to emphasis.
The impact of naval sonar on beaked whales is of increasing concern. In recent years the presence of gas and fat embolism consistent with decompression sickness (DCS) has been reported through postmortem analyses on beaked whales that stranded in connection with naval sonar exercises. In the present study, we use basic principles of diving physiology to model nitrogen tension and bubble growth in several tissue compartments during normal div ng behavior and for several hypothetical dive profiles to assess the risk of DCS. Assuming that normal diving does not cause nitrogen tensions in excess of those shown to be safe for odontocetes, the modeling indicates that repetitive shallow dives, perhaps as a consequence of an extended avoidance reaction to sonar sound, can indeed pose a risk for DCS and that this risk should increase with the duration of the response. If the model is correct, then limiting the duration of sonar exposure to minimize the duration of any avoidance reaction therefore has the potential to reduce the risk of DCS.
Thioredoxin 1 and thioredoxin 2 have opposed regulatory functions on hypoxia-inducible factor-1α
(2007)
Hypoxia inducible factor 1 (HIF-1), a key regulator for adaptation to hypoxia, is composed of HIF-1alpha and HIF-1beta. In this study, we present evidence that overexpression of mitochondria-located thioredoxin 2 (Trx2) attenuated hypoxia-evoked HIF-1alpha accumulation, whereas cytosolic thioredoxin 1 (Trx1) enhanced HIF-1alpha protein amount. Transactivation of HIF-1 is decreased by overexpression of Trx2 but stimulated by Trx1. Inhibition of proteasomal degradation of HIF-1alpha in Trx2-overexpressing cells did not fully restore HIF-1alpha protein levels, while HIF-1alpha accumulation was enhanced in Trx1-overexpressing cells. Reporter assays showed that cap-dependent translation is increased by Trx1 and decreased by Trx2, whereas HIF-1alpha mRNA levels remained unaltered. These data suggest that thioredoxins affect the synthesis of HIF-1alpha. Trx1 facilitated synthesis of HIF-1alpha by activating Akt, p70S6K, and eIF-4E, known to control cap-dependent translation. In contrast, Trx2 attenuated activities of Akt, p70S6K, and eIF-4E and provoked an increase in mitochondrial reactive oxygen species production. MitoQ, a mitochondria specific antioxidant, reversed HIF-1alpha accumulation as well as Akt activation under hypoxia in Trx2 cells, supporting the notion of translation control mechanisms in affecting HIF-1alpha protein accumulation.
Metabotropic glutamate receptor subtype 7 (mGluR7) belongs to the family of G-protein coupled receptors. mGluR7 is widely distributed in the brain and primarily localized at presynaptic terminals, where it is thought to regulate neurotransmitter release and synaptic plasticity. Studies have shown that the intracellular C-terminal tail of mGluR7 binds a variety of proteins in addition to trimeric G-proteins. These newly identified protein interactions are believed to play a key role in the synaptic targeting and G-protein dependent signaling of mGluR7. Protein interacting with C kinase 1 (PICK1), a PDZ-domain protein, is a strong interaction partner of mGluR7a. In order to investigate the role of PICK1 in the synaptic trafficking and signaling of mGluR7a, a knock-in mouse line in which the interaction of mGluR7a and PICK1 is disrupted was generated. Analysis of the mutant mice by immunocytochemistry and immunoelectron microscopy showed that the synaptic targeting and clustering of mGluR7a was not altered, indicating that PICK1 is not required for mGluR7a receptor membrane trafficking and synaptic localization. However, when the spontaneous synaptic activity of cerebellar granule cell cultures prepared from both wild-type and knock-in mice was monitored, and L-AP4 (400μm) was found to decrease the frequency, but not the amplitude, of spontaneous excitatory currents in wild-type neurons, while no effect of L-AP4 on spontaneous synaptic activity was observed in knock-in neurons. This indicates that PICK1 binding to the C-terminal region of mGluR7a plays an essential role in mGluR7a mediated G-protein signaling. We examined the threshold sensitivity for the convulsant pentetrazole (PTZ) in knock-in mice. It was found that mGluR7a knock-in mice had a greater sensitivity to PTZ than wild-type mice. Moreover, the surface parietal cortex EEG recordings of the mutant mice revealed spontaneous synchronous oscillation, or "spike-and-wave discharges" (SWD), which displayed similar characteristics to absence-like seizures. It was also observed that the knock-in mice responded to pharmacology as human absence epilepsy. These data suggests that the knock-in mice displayed the phenotype of absencelike epilepsy. Furthermore, the behavioral analysis of the mGluR7a knock-in mice showed no deficits in motor coordination, pain sensation, anxiety as well as spatial learning and memory, thus the interaction of mGluR7a and PICK1 appears not to contribute to these physiological processes. Taken together, our data provides evidence for an important role of PICK1 in Gprotein dependent signaling of mGluR7a, whereas PICK1 is not required for synaptic targeting and clustering of mGluR7a. Our results also provide an animal model of absencelike epilepsy generated by disruption of a single mGluR7a-PDZ interaction, thus creating a novel therapeutic target against this neurological disease.
The geometric parameters of the title compound, C8H6N2O·C6H3N3O7, are in the usual ranges. The three nitro groups are almost coplanar with the aromatic picrate ring [dihedral angles 10.2 (2)°, 7.62 (16) and 8.08 (17)°]. The molecular conformation of the picric acid is stabilized by an intramolecular O-H...O hydrogen bond. The phthalazin-1(2H)-one molecules are connected via N-H...O hydrogen bonds, forming centrosymmetric dimers. Key indicators: single-crystal X-ray study; T = 173 K; mean σ(C–C) = 0.002 Å; R factor = 0.034; wR factor = 0.091; data-to-parameter ratio = 11.1.
Sphingosylphosphorylcholine (SPC) is a bioactive lipid that binds to G protein-coupled-receptors and activates various signaling cascades. Here, we show that in renal mesangial cells, SPC not only activates various protein kinase cascades but also activates Smad proteins, which are classical members of the transforming growth factor-β (TGFβ) signaling pathway. Consequently, SPC is able to mimic TGFβ-mediated cell responses, such as an anti-inflammatory and a profibrotic response. Interleukin-1β-stimulated prostaglandin E2 formation is dose-dependently suppressed by SPC, which is paralleled by reduced secretory phospholipase A2 (sPLA2) protein expression and activity. This effect is due to a reduction of sPLA2 mRNA expression caused by inhibited sPLA2 promoter activity. Furthermore, SPC upregulates the profibrotic connective tissue growth factor (CTGF) protein and mRNA expression. Blocking TGFβ signaling by a TGFβ receptor kinase inhibitor causes an inhibition of SPC-stimulated Smad activation and reverses both the negative effect of SPC on sPLA2 expression and the positive effect on CTGF expression. In summary, our data show that SPC, by mimicking TGFβ, leads to a suppression of proinflammatory mediator production and stimulates a profibrotic cell response that is often the end point of an anti-inflammatory reaction. Thus, targeting SPC receptors may represent a novel therapeutic strategy to cope with inflammatory diseases.
GERMAN BANKS ARE HIGHLY SATISFIED WITH THEIR BUSINESS PROCESS OUTSOURCING (BPO) VENTURES. BENEFITS ARE ACHIEVED THROUGH THE COMBINATION OF A CLOSE VENDOR RELATIONSHIP AND A WELL-DEFINED OUTSOURCING CONTRACT. THE OUTSOURCING OF DOMESTIC PAYMENT PROCESSES IS MOST SUCCESSFUL WHEREAS THE OUTSOURCING OF CONSUMER CREDIT PROCESSES STRUGGLES WITH QUALITY IMPROVEMENTS.
Background Today it is widely accepted that plastids are of cyanobacterial origin. During their evolutionary integration into the metabolic and regulatory networks of the host cell the engulfed cyanobacteria lost their independency. This process was paralleled by a massive gene transfer from symbiont to the host nucleus challenging the development of a retrograde protein translocation system to ensure plastid functionality. Such a system includes specific targeting signals of the proteins needed for the function of the plastid and membrane-bound machineries performing the transfer of these proteins across the envelope membranes. At present, most informations on protein translocation are obtained by the analysis of land plants. However, the analysis of protein import into the primitive plastids of glaucocystophyte algae, revealed distinct features placing this system as a tool to understand the evolutionary development of translocation systems. Here, bacterial outer membrane proteins of the Omp85 family have recently been discussed as evolutionary seeds for the development of translocation systems. Results To further explore the initial mode of protein translocation, the observed phenylalanine dependence for protein translocation into glaucophyte plastids was pursued in detail. We document that indeed the phenylalanine has an impact on both, lipid binding and binding to proteoliposomes hosting an Omp85 homologue. Comparison to established import experiments, however, unveiled a major importance of the phenylalanine for recognition by Omp85. This finding is placed into the context of the evolutionary development of the plastid translocon. Conclusion The phenylalanine in the N-terminal domain signs as a prerequisite for protein translocation across the outer membrane assisted by a primitive translocon. This amino acid appears to be optimized for specifically targeting the Omp85 protein without enforcing aggregation on the membrane surface. The phenylalanine has subsequently been lost in the transit sequence, but can be found at the C-terminal position of the translocating pore. Thereby, the current hypothesis of Omp85 being the prokaryotic contribution to the ancestral Toc translocon can be supported.
Background Synchronous neuronal firing has been discussed as a potential neuronal code. For testing first, if synchronous firing exists, second if it is modulated by the behaviour, and third if it is not by chance, a large set of tools has been developed. However, to test whether synchronous neuronal firing is really involved in information processing one needs a direct comparison of the amount of synchronous firing for different factors like experimental or behavioural conditions. To this end we present an extended version of a previously published method NeuroXidence [1], which tests, based on a bi- and multivariate test design, whether the amount of synchronous firing above the chance level is different for different factors.
This is the fourth in a series of publications on Zambian languages and grammar. The intention of the series is to boost the meagre scholarship and availability of educational materials on Zambian languages, which became particularly urgent in 1996, following the decision of the Zambian government to revert to the policy of using local languages as media of instruction. Kaonde (or more correctly Kikaonde) is spoken in the part of the North-Western Province of Zambia to the east of the Kabompo River, in adjacent parts of Mumbwa and Kaoma Districts to the south, and in the Katanga Province of the Democratic Republic of Congo to the North.
Both practitioners and academics agree about the importance of price and its direct influenceon consumers’ purchase decision as well as the company profit. In the reality, we rarely see a
single price for a given product. One visit in a store already shows that consumers face many various prices. This strategy of differential prices allows to increase profit but also improves consumers’ situation and increases welfare. A wide range of various price differentiation mechanisms exists on the market which makes price differentiation a very interesting phenomenon. Additionally, market developments constantly allow for new price differentiation applications. In this work, I research a fascinating topic of price differentiation, its various forms
and new application possibilities in changing market areas.
Clear native electrophoresis and blue native electrophoresis are microscale techniques for the isolation of membrane protein complexes. The Coomassie Blue G-250 dye, used in blue native electrophoresis, interferes with in-gel fluorescence detection and in-gel catalytic activity assays. This problem can be overcome by omitting the dye in clear native electrophoresis. However, clear native electrophoresis suffers from enhanced protein aggregation and broadening of protein bands during electrophoresis and therefore has been used rarely. To preserve the advantages of both electrophoresis techniques we substituted Coomassie dye in the cathode buffer of blue native electrophoresis by non-colored mixtures of anionic and neutral detergents. Like Coomassie dye, these mixed micelles imposed a charge shift on the membrane proteins to enhance their anodic migration and improved membrane protein solubility during electrophoresis. This improved clear native electrophoresis offers a high resolution of membrane protein complexes comparable to that of blue native electrophoresis. We demonstrate the superiority of high resolution clear native electrophoresis for in-gel catalytic activity assays of mitochondrial complexes I–V. We present the first in-gel histochemical staining protocol for respiratory complex III. Moreover we demonstrate the special advantages of high resolution clear native electrophoresis for in-gel detection of fluorescent labeled proteins labeled by reactive fluorescent dyes and tagged by fluorescent proteins. The advantages of high resolution clear native electrophoresis make this technique superior for functional proteomics analyses.
Background The Radical Pair model proposes that magnetoreception is a light-dependent process. Under low monochromatic light from the short-wavelength part of the visual spectrum, migratory birds show orientation in their migratory direction. Under monochromatic light of higher intensity, however, they showed unusual preferences in other directions or axial preferences. To determine whether or not these responses are still controlled by the respective light regimes, European robins, Erithacus rubecula, were tested under UV, Blue, Turquoise and Green light at increasing intensities, with orientation in migratory direction serving as a criterion whether or not magnetoreception works in the normal way. Results Under low light with a quantal flux of 8 times 10 to 15 power quanta s-1 m-2, the birds were well oriented in their seasonally appropriate migratory direction under 424 nm Blue, 502 nm Turquoise and 565 nm Green light, indicating unimpaired magnetoreception. Under 373 nm UV of the same quantal flux, they were not oriented in migratory direction, showing a preference of the east-west axis instead, but they showed excellent orientation in migratory direction under UV of lower intensity. Intensities of above 36 times 10 to 15 power quanta s-1 m-2 of Blue, Turquoise and Green light elicited a variety of responses: disorientation, headings along the east-west axis, headings along the north-south axis or 'fixed' direction tendencies. These responses changed as the intensity was increased from 36 times 10 to the 15 power quanta s-1 m-2 to 54 and 72 times 10 to 15 power quanta s-1 m-2. Conclusion The specific manifestation of responses in directions other than migratory direction clearly depends on the ambient light regime. This implies that although mechanisms normally providing magnetic compass information seem disrupted, processes that are activated by light still control the behavior. It suggests complex interactions between different types of receptors, magnetic and visual. The nature of the receptors involved and details of their connections are not yet known; however, a role of the color cones in the processes mediating magnetic input is suggested.
Since about the year 2000 a hitherto unidentified species of the genus Leiobunum C. L. Koch, 1839, has rapidly invaded central and western Europe. Records are known from The Netherlands (probably the country of first occurrence in Europe), Germany, Austria and Switzerland. This introduced species, until now, mainly inhabits walls of buildings and rocky environments. Adults characteristically aggregate during daytime into groups of up to 1.000 individuals. The species is described and details on its present distribution, habitat preference, phenology and behaviour are presented.
Humans possess a number concept that differs from its predecessors in animal cognition in two crucial respects: (1) it is based on a numerical sequence whose elements are not confined to quantitative contexts, but can indicate cardinal/quantitative as well as ordinal and even nominal properties of empirical objects (e.g. ‘five buses’: cardinal; ‘the fifth bus’: ordinal; ‘the #5 bus’: nominal), and (2) it can involve recursion and, via recursion, discrete infinity. In contrast to that, the predecessors of numerical cognition that we find in animals and human infants rely on finite and iconic representations that are limited to cardinality and do not support a unified concept of number. In this paper, I argue that the way such a unified number concept could evolve in humans is via verbal sequences that are employed as numerical tools, that is, sequences of words whose elements are associated with empirical objects in number assignments. In particular, I show that a certain kind of number words, namely the counting sequences of natural languages, can be characterised as a central instance of verbal numerical tools. I describe a possible scenario for the emergence of such verbal numerical tools in human history that starts from iconic roots and that suggests that in a process of co-evolution, the gradual emergence of counting sequences and the development of an increasingly comprehensive number concept supported each other. On this account, it is language that opened the way for numerical cognition, suggesting that it is no accident that the same species that possesses the language faculty as a unique trait, should also be the one that developed a systematic concept of number.
The catalytic mechanism, electron transfer coupled to proton pumping, of heme-copper oxidases is not yet fully understood. Microsecond freeze-hyperquenching single turnover experiments were carried out with fully reduced cytochrome aa(3) reacting with O(2) between 83 micros and 6 ms. Trapped intermediates were analyzed by low temperature UV-visible, X-band, and Q-band EPR spectroscopy, enabling determination of the oxidation-reduction kinetics of Cu(A), heme a, heme a(3), and of a recently detected tryptophan radical (Wiertz, F. G. M., Richter, O. M. H., Cherepanov, A. V., MacMillan, F., Ludwig, B., and de Vries, S. (2004) FEBS Lett. 575, 127-130). Cu(B) and heme a(3) were EPR silent during all stages of the reaction. Cu(A) and heme a are in electronic equilibrium acting as a redox pair. The reduction potential of Cu(A) is 4.5 mV lower than that of heme a. Both redox groups are oxidized in two phases with apparent half-lives of 57 micros and 1.2 ms together donating a single electron to the binuclear center in each phase. The formation of the heme a(3) oxoferryl species P(R) (maxima at 430 nm and 606 nm) was completed in approximately 130 micros, similar to the first oxidation phase of Cu(A) and heme a. The intermediate F (absorbance maximum at 571 nm) is formed from P(R) and decays to a hitherto undetected intermediate named F(W)(*). F(W)(*) harbors a tryptophan radical, identified by Q-band EPR spectroscopy as the tryptophan neutral radical of the strictly conserved Trp-272 (Trp-272(*)). The Trp-272(*) populates to 4-5% due to its relatively low rate of formation (t((1/2)) = 1.2 ms) and rapid rate of breakdown (t((1/2)) = 60 micros), which represents electron transfer from Cu(A)/heme a to Trp-272(*). The formation of the Trp-272(*) constitutes the major rate-determining step of the catalytic cycle. Our findings show that Trp-272 is a redox-active residue and is in this respect on an equal par to the metallocenters of the cytochrome c oxidase. Trp-272 is the direct reductant either to the heme a(3) oxoferryl species or to Cu (2+)(B). The potential role of Trp-272 in proton pumping is discussed.
Das genetische Material der Zellen besteht aus Molekülketten der Desoxyribonukleinsäure (DNA), die ein Träger der Erbinformation ist. In normalen Körperzellen wird die Erbinformation der DNA in eine andere Molekülkette, die sogenannte Ribonukleinsäure (RNA), übersetzt. Die RNA reguliert die Bildung von neuem Protein in der Zelle. Dass die RNA nicht bloß ein „Stempel“ ist, der die Informationen der DNA weitervermittelt, darin sind sich die Experten heute einig. RNA-Moleküle können Informationen speichern, katalytische Aktivitäten entfalten, sich perfekt tarnen, und sie regulieren auch als Produkt ihre eigene Synthese. Manche Viren enthalten ebenfalls RNA (oder DNA) und können so den Produktionsapparat der Zelle täuschen. Erkenntnisse über die Wechselwirkung dieser RNA mit natürlichen und synthetischen Liganden können zur Suche nach potentiellen Wirkstoffen beitragen. Nukleinsäuren sind lineare Biopolymere von grundlegenden Untereinheiten, die Nukleotide genannt werden und aus Adenin (A), Cytosin (C), Guanin (G), Urazil (U), und Thymin (T) zusammengesetzt sind. Sie sind jedoch in der Lage sich zu falten und so eine Doppel-Helixstruktur auszubilden. Diese besteht größtenteils aus den bekannten "Watson-Crick-Basenpaaren" (G-C und A-U oder A-T), die zur Stabilität der Struktur beitragen, sowie aus den weniger stabilen G-U-Paaren. Durch die Wechselwirkung zwischen verschiedenen Sekundärstrukturelementen entstehen Tertiärstrukturelemente, deren Struktur und Dynamik oft nur schwer experimentell zu bestimmen sind. Fortschritte in der RNA-Strukturanalyse wurden durch Röntgenkristallographie und Kernresonanzspektroskopie (NMR) möglich. Durch die Röntgenkristallographie wurden viele RNA-Eigenschaften festgestellt. Allerdings besteht keine Kristallstruktur für alle mögliche Einzelnfaser-RNA-Haarnadeln, weil diese immer dazu neigen, in eine linearen doppelte Faserform zu kristallisieren, die geringe biologische Bedeutung hat. Außerdem wurde mit Hilfe der NMR-Spektroskopie das dynamische Verhalten von RNA, z.B. Entfaltungsprozesse bei ansteigender Temperatur, beobachtet. Jedoch erlauben diese experimentellen Daten oft keine direkte mikroskopische Beschreibung der molekularen Prozesse. Molekulardynamik (MD)-Simulationen von biologischen Systemen ermöglichen es hingegen, diese Prozesse in atomischem Detail zu untersuchen. Die MD-Simulation beschreibt ein molekulares System auf atomarer Ebene mit Hilfe der klassischen Mechanik. Kräfte werden von empirischen Potentialen abgeleitet. Sie liefern zeitabhängige Trajektorien, die sich aus den Newton'schen Bewegungsgleichungen ergeben. Durch verbesserte Computerleistung, bessere Kraftfelder, und neu entwickelte genauere Methoden stimmen heutzutage MD-Simulationen von RNA mit experimentellen Daten immer besser überein. In meiner Doktorarbeit wurden MD-Simulationen durchgeführt um die Dynamik, die Struktur und insbesondere die Stabilität von RNA-Hairpins theoretisch zu beschreiben, um so ein erweitertes Verständnis für die dynamischen Vorgänge zu erhalten. Auch der SFB 579 der Universität Frankfurt beschäftigt sich mit RNA-Systemen. Erforscht wird unter anderem der D-Loop des Coxsackievirus B3 (CVB3), der Virenmyocarditis verursacht. Die Interpretation dieser experimentellen Daten wird durch MD-Simulation möglich. In dieser Arbeit wurden das GROMACS Software-Paket und das AMBER Kraftfeld verwendet, um das strukturelle, dynamische und thermische Verhalten der RNA-Hairpins mit Hilfe von MD-Simulationen auf atomarer Ebene zu untersuchen. Betrachtet wurden die 14-mer RNA-Hairpins, uCACGg und cUUCGg. Die verfügbaren NMR-Strukturen zeigen, dass das uCACGg-Tetraloop auffallend ähnlich in der gesamten Geometrie und den Wasserstoffbindungen zu der experimentellen Struktur des cUUCGg-Tetraloop ist, obwohl die schließende Basenpaarsequenz der beiden Tetraloops unterschiedlich sind. Trotz beachtlicher struktureller Ähnlichkeit unterscheiden sich allerdings die uCACGg und cUUCGg Tetraloops in Funktionalität und Thermostabilität. Zunächst orientiert sich unser erstes Bemühen an der Frage nach einem guten Modell für RNA-Hairpins und Simulationsbedingungen, um die zu untersuchenden RNA-Hairpins in Wasser möglichst realitätsnah zu simulieren. Erstens werden drei Versionen des biomolekularen AMBER-Kraftfelds geprüft, indem man die 60 ns Simulationen des 14-mer uCACGg-Hairpins durchführt. Die simulierten strukturellen Eigenschaften und Atomfluktuationen zeigen hohe Ähnlichkeiten in den drei Kraftfeldern. Darüber hinaus stimmen die von MD-Simulationen berechneten Atomkernabstände mit den experimentellen NMR-Daten gut überein. Die gute Übereinstimmung zwischen den Simulationen und den strukturellen NMR Daten belegt die Fähigkeit des AMBER-Kraftfelds zur Beschreibung der strukturellen Eigenschaft von kleinen RNA-Hairpins. Anschließend werden die Einflüsse der Methoden, welche die langreichweitigen, elektrostatischen Wechselwirkungen beschreiben, auf die strukturellen Eigenschaften untersucht. Insbesondere werden die Ergebnisse der Reaktionfeld-Methode mit denen der Particle Mesh Ewald (PME)-Methode verglichen. Es zeigt sich, dass die PME-Methode die elektrostatischen Wechselwirkungen am besten beschreibt, auch wenn die Simulationen der beiden Methoden Ähnlichkeit in der Struktur-Stabilität und der Atomfluktuation bei niedriger Natriumkonzentration aufweisen. Drittens wird der Kationseffekt auf die RNA-Stabilität untersucht. Betrachtet wurden zwei unterschiedliche Kationen (ein- und zweiwertig) und verschiedene Konzentrationen. Die Simulationen weisen darauf hin, dass sich die Metallionen in der Affinität zum RNA-Hairpin unterscheiden, wenn Na+ und/oder Mg2+ als Gegenionen verwendet werden. Weiterhin wird gezeigt, dass sich die bevorzugten Positionen der Na+-Ionen in der großen Furche (major groove) des RNA-Hairpins befinden. Insbesondere die Anlagerungsort der Na+-Ionen liegen in der Nähe des schließenden Basenpaar U5-G10. Im Vergleich zu Na+-Ionen lagern sich Mg2+-Ionen sowohl an die RNA-Basen U3, A4-U11, und die Phosphat-Gruppe, als auch an das schließenden Basenpaar U5-G10 an. Bestätigt werden die Modelle und Simulationsbedingungen durch den Vergleich von Parametern, die sowohl experimentell als auch durch Simulationen ermittelt werden können. Ferner erlauben MD-Simulationen Einblick in das System, indem sie detallierte Konformations- und andere Verteilungen liefern. In der vorliegenden Arbeit wurden die Einflüsse der Loopsequenz und des schließenden Basenpaares auf die Verteilung der Konformationen, der internen Bewegungen, und auf die Thermostabilität von zwei RNA-Hairpins mit Hilfe dieser Modelle untersucht. Zunächst wurden die strukturellen Eigenschaften bei Raumtemperatur ausgewertet. Die starken strukturellen Ähnlichkeiten und die gute Übereinstimmung mit NMR-Daten bestätigen die Hypothese, dass die zwei Tetraloops zur gleichen “erweiterten” RNA-Familie gehören. Diese zwei Hairpins haben ähnliche Lösemittelzugängliche Oberflächen (solvent accessible surface), wobei deren Lösemittel zugänglichen funktionellen Gruppen unterschiedlich sind. Weiterhin weist das uCACGg-Hairpin eine stärkere Tendenz auf Wasserstoffe abzugeben als das cUUCGg-Hairpin, was in den unterschiedlichen Bindungsaffinitäten zwischen diesen Hairpins und der viralen Protease begründet liegt. Darüber hinaus wurde der Faltungs- und Entfaltungsprozess mit Hilfe der Replica-Exchange-Molekulardynamik-Simulationen untersucht. Diese Untersuchung zielt auf das bessere Verständnis der unterschiedlichen Thermostabilität der Hairpins, indem sie die möglichen Zwischenprodukte im atomaren Detail liefern. Sowohl experimentell als auch von den MD-Simulationen ergibt sich eine Differenz in den Schmelztemperaturen der beiden Hairpins von ungefähr 20 K. Allerdings sind die von MD beobachteten Schmelztemperaturen 20 % höher als die von Experiment zu ansehende Wert. Die Ergebnisse machen deutlich, dass die Schmelztemperaturdifferenz nicht auf die Unterschiede in der Sequenz, in der Struktur, oder in der Dynamik der Loops zurückführen sind, sondern auf die Unterschiede der Basenpaaren in den Stämmen. Weiterhin wird gezeigt, dass sich das uCACGg-Hairpin einerseits kooperativ entfaltet, und die Entfaltung des cCACGg-Hairpins anderseits weniger kooperativ stattfindet. Um die schnelle interne Dynamik der uCACGg- und cUUCGg-Hairpins zu untersuchen, erlauben die Simulationen von 50 ns eine akurate Beschreibung der schnellen internen Bewegung der RNA-Hairpin, obwohl der den Hairpins zugängliche Konformationsraum nicht vollständig abgedeckt wird. Die NMR-Relaxationsparameter, die mit Hilfe der MD-Simulationen zurückgerechnet wurden, bestätigen das Modell und die Simulationsbedingungen der MD-Simulationen. Im Hinblick auf die Übereinstimmung kann man den besten Ansatz zur Berechnung der NMR-Ordnungsparameter bestimmen. In dieser Arbeit wurden drei verschiedene Ansätze angewandt, nämlich das Fitting von 100 ps auf modellfreiem Ansatz nach Lipari-Szabo, equilibrium average, und das Gaussian Axial Fluctuation (GAF)-Modell. Die zwei letzteren können nur qualitativ mit den experimentellen Daten übereinstimmen. Die NMR-Ordnungsparameter können mit Hilfe des Modells von Lipari-Szabo richtig ermittelt werden, wenn sich die interne Bewegung in kleineren Zeitskalen als zur Gesamtbewegung vollzieht. Vorausetzung für die Berechnung dieses Modells ist aber, dass das Fitting der internen Korrelationsfunktionen nur auf den ersten Teil von 100 ps der Korrelationsfunktionen eingesetzt wird. Die berechneten Ordnungsparameter deuten auf ein unterschiedliches Verhalten der beiden Hairpins besonders im Loop-Bereich hin. Die konformationelle Umordnung, die beim UUCG-Loop beobachtet wurde, tritt beim CACG-Loop nicht ein. Zusammenfassend lässt sich sagen, dass es durch den Einsatz von MD Simulationen ermöglicht wird, die strukturellen und dynamischen Eigenschaften der RNA-Systeme auf atomarer Ebene zu untersuchen. Als Schlussfolgerung zeigt diese Doktorarbeit, dass sich die Studie der konformationell Dynamik der RNA-Systeme durch die Kombination aus MD-Simulation und NMR-Spektroskopie sowie der Leistungsfähigkeit der MD-Simulationen, die die interne Bewegungen deutlich beschreiben können, untersuchen lässt.
Namibia is known to be the most arid country south of the Sahara. Average annual rainfall is not only relatively low in most parts of the country, it is also highly variable. Only 8 per cent of the country receives enough rain during a normal rainy season to practice rainfed cultivation. At the same time between 60 per cent and 70 per cent of the population depend on subsistence agro-pastoralism in non-freehold or communal areas. Against the background of rising unemployment, the livelihoods of the majority of these people are likely to depend on natural resources in the foreseeable future.
Natural resources generally are under considerable strain. As the rural population increases, so is the demand for natural resources, land and water specifically. Dependency on subsistence farming which is the result of large scale rural poverty exacerbates the problem. Large parts of the country are stocked injudiciously, resulting in overgrazing and water is frequently overabstracted, leading to declining water tables (MET 2005: 2).
Unequal access to both land and water has prompted government to introduce reforms in these sectors. These reforms were guided by the desire to manage resources more sustainably while providing more equal access to them. In terms of NDP 2, sustainability means to use natural resources in such a way so as not to ‘compromise the ability of future generations to make use of these resources’ (NDP 2: 595).
Immediately after Independence government started reform processes in the land and water sectors. However, these reforms have happened at different paces and largely independent of each other. Increasingly policy makers and development practitioners realised that land and water management needed to be integrated, as decisions about land management and land use options had a direct impact on water resources. Conversely the availability of water sets the parameters for what is possible in terms of agricultural production and other land uses. The north-central regions face a particular challenge in this regard as the region carries more livestock than it can sustain in the long run. At the same time, close to half the households do not own any livestock. Access to livestock by these households would improve their abilities to cultivate their land more efficiently in order to feed themselves and thus reduce poverty levels.
But livestock are a major consumer of water. In 2000 livestock was consuming more water than the domestic sector. The figures were 77Mm3/a and 67Mm3/a respectively (Urban et al. 2003 Annex 7: 2). This situation has prompted a Project Progress Report on the Namibia Water Resources Management Review in 2003 to conclude that Given the extreme water scarcity in most parts of the country, land and water issues are closely linked. It therefore seems indispensable to mutually adjust land – and water sector reform processes (Ibid: 20).
This paper will briefly look at four institutions that are central to land and water management with a view to assess the extent to which they interact. These are Communal Land Boards, Water Point Committees, Traditional Authorities and Regional Councils. A discussion of relevant policy documents and legislative instruments will investigate whether the existing policy framework
provides for an integrated approach or not. Before doing this, it appears sensible to briefly situate these four institutions in the wider maze of institutions operating at regional and
sub-regional level. All these institutions – important as they are in the quest to improve participation at the regional and sub-regional level – are competing for time and input fros mallscale farmers.
The cytochrome bc1 complex is a dimeric enzyme of the inner mitochondrial membrane that links electron transfer from ubiquinol to cytochrome c by a protonmotive Q cycle mechanism in which ubiquinol is oxidized at one center in the enzyme, referred to as center P, and ubiquinone is rereduced at a second center, referred to as center N. To better understand the mechanism of ubiquinol oxidation, we have examined catalytic activities and pre-steady-state reduction kinetics of yeast cytochrome bc1 complexes with mutations in cytochrome b that we expected would affect oxidation of ubiquinol. We mutated two residues thought to be involved in proton conduction linked to ubiquinol oxidation, Tyr132 and Glu272, and two residues proposed to be involved in docking ubiquinol into the center P pocket, Phe129 and Tyr279. Substitution of Phe129 by lysine or arginine yielded a respiration-deficient phenotype and lipid-dependent catalytic activity. Increased bypass reactions were detectable for both variants, with F129K showing the more severe effects. Substitution with lysine leads to a disturbed coordination of a b heme as deduced from changes in the midpoint potential and the EPR signature. Removal of the aromatic side chain in position Tyr279 lowers the catalytic activity accompanied by a low level of bypass reactions. Pre-steady-state kinetics of the enzymes modified at Glu272 and Tyr132 confirmed the importance of their functional groups for electron transfer. Altered center N kinetics and activation of ubiquinol oxidation by binding of cytochrome c in the Y132F and E272D enzymes indicate long range effects of these mutations.
Background Identification and evaluation of surface binding-pockets and occluded cavities are initial steps in protein structure-based drug design. Characterizing the active site's shape as well as the distribution of surrounding residues plays an important role for a variety of applications such as automated ligand docking or in situ modeling. Comparing the shape similarity of binding site geometries of related proteins provides further insights into the mechanisms of ligand binding. Results We present PocketPicker, an automated grid-based technique for the prediction of protein binding pockets that specifies the shape of a potential binding-site with regard to its buriedness. The method was applied to a representative set of protein-ligand complexes and their corresponding apo-protein structures to evaluate the quality of binding-site predictions. The performance of the pocket detection routine was compared to results achieved with the existing methods CAST, LIGSITE, LIGSITEcs, PASS and SURFNET. Success rates PocketPicker were comparable to those of LIGSITEcs and outperformed the other tools. We introduce a descriptor that translates the arrangement of grid points delineating a detected binding-site into a correlation vector. We show that this shape descriptor is suited for comparative analyses of similar binding-site geometry by examining induced-fit phenomena in aldose reductase. This new method uses information derived from calculations of the buriedness of potential binding-sites. Conclusions The pocket prediction routine of PocketPicker is a useful tool for identification of potential protein binding-pockets. It produces a convenient representation of binding-site shapes including an intuitive description of their accessibility. The shape-descriptor for automated classification of binding-site geometries can be used as an additional tool complementing elaborate manual inspections.
The removal of apoptotic cells (AC) can be regarded as an integral component of the program to terminate inflammation. Clearance of AC by professional phagocytes such as macrophages induces an anti-inflammatory phenotype in the latter ones. Anti-inflammatory or M2 polarization is also observed in macrophages infiltrating certain human tumors. These tumor-associated macrophages (TAM) contribute actively to tumor progression by promoting immune evasion, angiogenesis and tumor cell survival. The aim of my Ph.D. thesis was to approach the mechanisms as well as the characteristics of macrophage phenotype alterations induced by AC, and to elucidate a possible connection between tumor cell apoptosis and TAM generation. In the first part of my studies, I investigated the impact of AC on macrophage viability. I could show that macrophage survival against pro-apoptotic agents increased after the interaction with AC. Protection of macrophages against cell death required activation of phosphatidylinositol-3 kinase (PI3K), extracellular signal-regulated kinase 1/2 (ERK1/2) and Ca2+ signaling, and correlated with Bcl-XL and Bcl-2 up-regulation as well as Ser136-Bad phosphorylation. Unexpectedly, neither phagocytosis nor binding of apoptotic debris to the phagocyte was necessary to induce protection. AC released the bioactive lipid sphingosine-1-phosphate (S1P), dependent on sphingosine kinase (SphK) 2, as a survival messenger. These data indicated an active role of AC in preventing cell destruction in their neighborhood. My next aim was to elucidate the mechanism of S1P production by AC. During cell death, SphK 2 was cleaved at its N-terminus by caspase-1. Thereupon, the truncated but enzymatically active fragment of SphK 2 was released from cells. This release was coupled to phosphatidylserine exposure, a hallmark of apoptosis and a crucial signal for the phagocyte/apoptotic cell interaction. Thus, I observed a link between common signaling events during apoptosis and the extracellular production of S1P, which is known to affect immune cell attraction and polarization as well as angiogenesis in cancer. In the next part of my studies, I asked for a correlation between tumor cell apoptosis and TAM polarization. During co-culture of human macrophages with human breast cancer carcinoma cells (MCF-7), the latter ones were killed, while macrophages acquired an alternatively activated phenotype. This was characterized by decreased tumor necrosis factor (TNF)-α; and interleukin (IL)-12-p70 production, but increased formation of IL-8 and IL-10. Alternative macrophage activation required tumor cell death, because a co-culture with apoptosis-resistant colon carcinoma cells (RKO) or Bcl-2-overexpressing MCF-7 cells failed to induce phenotype alterations. These phenotype alterations were also achieved with conditioned media from apoptotic tumor cells, which again argued for a soluble factor being involved. Knock-down of SphK2, but not SphK1, to attenuate S1P formation in MCF-7 cells, repressed the otherwise observed alternative macrophage polarization during co-culture. Furthermore, macrophage polarization achieved by tumor cell apoptosis or substitution of authentic S1P was characterized by suppression of pro-inflammatory nuclear factor (NF)-κB DNA binding. These findings suggested that tumor cell apoptosis-derived S1P contributes to the macrophage polarization present in human tumors. To validate these in vitro data, I used an in vivo tumor model to clarify the relevance of SphK2 and S1P in tumor development. The growth of, as well as blood vessel infiltration into SphK2 knock-down MCF-7 (MCF-7-siSphK2) xenografts in nude mice was markedly decreased in comparison to control MCF-7 xenografts. In contrast, macrophage infiltration was similar or even more pronounced. These data provided a first hint for an in vivo role of SphK2-derived S1P in macrophage polarization associated with tumor promotion. In summary, these data indicate a new mechanism how AC themselves shape macrophage polarization, which results in the termination of inflammatory responses and macrophage survival. Furthermore, my studies present evidence that human tumors may utilize this mechanism to foster growth via increased angiogenesis.
Background Objects in our environment are often partly occluded, yet we effortlessly perceive them as whole and complete. This phenomenon is called visual amodal completion. Psychophysical investigations suggest that the process of completion starts from a representation of the (visible) physical features of the stimulus and ends with a completed representation of the stimulus. The goal of our study was to investigate both stages of the completion process by localizing both brain regions involved in processing the physical features of the stimulus as well as brain regions representing the completed stimulus. Results Using fMRI adaptation we reveal clearly distinct regions in the visual cortex of humans involved in processing of amodal completion: early visual cortex - presumably V1 - processes the local contour information of the stimulus whereas regions in the inferior temporal cortex represent the completed shape. Furthermore, our data suggest that at the level of inferior temporal cortex information regarding the original local contour information is not preserved but replaced by the representation of the amodally completed percept. Conclusion These findings provide neuroimaging evidence for a multiple step theory of amodal completion and further insights into the neuronal correlates of visual perception.
Splicing of pre-mRNA is a critical step in mRNA maturation and disturbances cause several genetic disorders. We apply the synthetic tetracycline (tc)-binding riboswitch to establish a gene expression system for conditional tc-dependent control of pre-mRNA splicing in yeast. Efficient regulation is obtained when the aptamer is inserted close to the 5′splice site (SS) with the consensus sequence of the SS located within the aptamer stem. Structural probing indicates limited spontaneous cleavage within this stem in the absence of the ligand. Addition of tc leads to tightening of the stem and the whole aptamer structure which probably prevents recognition of the 5′SS. Combination of more then one aptamer-regulated intron increases the extent of regulation leading to highly efficient conditional gene expression systems. Our findings highlight the potential of direct RNA–ligand interaction for regulation of gene expression.
Einleitung: Es wurden die Leistungen beim Verstehen im Störgeräusch von CI-Patienten mit unterschiedlichen Implantattypen verglichen. Der TEMPO+ Sprachprozessor (MED-EL, Implantat C40+) verwendet ein Mikrophon mit Kugelcharakteristik, während der ESPrit 3G Prozessor (COCHLEAR, Implantat CI24R(CA)) mit einem frontal ausgelegten Richtmikrophon ausgestattet ist.
Methode: Von den zwei untersuchten Patientengruppen (n=20) war eine mit einem C40+ Implantat (MED-EL, Innsbruck), die andere mit dem CI24RCA Implantat (Cochlear, Melbourne) versorgt. Es wurde die S0N180 Lautsprecheranordnung im Freifeld für den HSM-Test (Hochmair, Schulz und Moser, 1997) und die S0N0 Anordnung für den Oldenburger Satztest (Wagener, Kühnel und Kollmeier, 1999) verwendet. Der OLSA wurde mit festem Sprachpegel (65 dB SPL) und adaptivem Störgeräusch durchgeführt. Der HSM-Satztest wurde bei Signal-/ Rauschverhältnissen von 15 dB, 10 dB, 5 dB, 0dB sowie ohne Störgeräusch durchgeführt.
Ergebnisse: Im HSM-Satztest (S0N180) wurden signifikant bessere Leistungen beim Verstehen im Störgeräusch für die Gruppe mit dem Richtmikrophon nachgewiesen. Im Oldenburger Satztest zeigten sich keine signifikanten Unterschiede.
Schlussfolgerungen: Im Vergleich zu einem Mikrophon mit Kugelcharakteristik verbessert ein Richtmikrophon das Sprachverstehen in Situationen, in denen die Sprache frontal und der Störschall von hinten dargeboten werden.
Adverse events triggered by non-steroidal anti-inflammatory drugs (NSAIDs) are among the most common drug-related intolerance reactions in medicine; they are possibly related to inhibition of cyclooxygenase-1. Coxibs, preferentially inhibiting cyclooxygenase-2, may therefore represent safe alternatives in patients with NSAID intolerance. We reviewed the literature in a systematic and structured manner to identify and evaluate studies on the tolerance of coxibs in patients with NSAID intolerance. We searched MEDLINE (1966–2006), the COCHRANE LIBRARY (4th Issue 2006) and EMBASE (1966–2006) up to December 9, 2006, and analysed all publications included using a predefined evaluation sheet. Symptoms and severity of adverse events to coxibs were analysed based on all articles comprising such information. Subsequently, the probability for adverse events triggered by coxibs was determined on analyses of double-blind prospective trials only. Among 3,304 patients with NSAID intolerance, 119 adverse events occurred under coxib medication. All adverse events, except two, have been allergic/urticarial in nature; none was lethal, but two were graded as life-threatening (grade 4). The two non-allergic adverse events were described as a grade 1 upper respiratory tract haemorrhage, and a grade 1 gastrointestinal symptom, respectively. In 13 double-blind prospective studies comprising a total of 591 patients with NSAID intolerance, only 13 adverse reactions to coxib provocations were observed. The triggering coxibs were rofecoxib (2/286), celecoxib (6/208), etoricoxib (4/56), and valdecoxib (1/41). This review documents the good tolerability of coxibs in patients with NSAID intolerance, for whom access to this class of drugs for short-term treatment of pain and inflammation is advantageous.
There is no question about charity in Islam: Allah himself has ordered almsgiv-ing: "Narrated Anas bin Malik: … The man further said, 'I ask you by Allah. Has Allah ordered you to take zakat from our rich people and distribute it amongst our poor people?' The Prophet replied, 'By Allah, yes'." The fundamental relevance of Islamic charity, zakat and sadaqa3, roots in the Muslim understanding of God. According to the proper message of Mohammed the first and primary name and quality of God is rahman and rahim4. Allah is - so to speak – rahman, the life giving uterus, rahim. Like the uterus he gives life to the men without any pre-condition. Life is a gift free of charge not a reward for something. ...
Fragmented Melodies
(2007)
Applying an investment perspective to higher education, the paper presents detailed empirical evidence on the rate of return to higher education and its determinants. Employing a sample of 17,180 higher education graduates derived from the German Labor Force Survey 2004, we show considerable variation in the rates of return to higher education across the different subjects, with some subjects on average not representing attractive private investments from an economic point of view. We find that the decision what to study is worth several hundred thousand Euros. Applying regression analysis, we find gender- and degree-specific return advantages only in certain subjects. Comparing the return of an investment in higher education and the production cost of higher education, we show that more expensive subjects (apart from Medicine) yield a lower return. When considering the cost of study, the overall order of attractiveness of the different forms of education remains stable, but the investment in further subjects is no longer clearly attractive. Keywords: Returns to Education, Human Capital, Higher Education Earnings Capacity.
The pseudoparticle approach is a numericalmethod to compute path integrals without discretizing spacetime. The basic idea is to consider only those field configurations, which can be represented as a linear superposition of a small number of localized building blocks (pseudoparticles), and to replace the functional integration by an integration over the pseudoparticle degrees of freedom. In previous papers we have successfully applied the pseudoparticle approach to SU(2) Yang-Mills theory. In this work we discuss the inclusion of fermionic fields in the pseudoparticle approach. To test our method, we compute the phase diagram of the 1+1-dimensional Gross-Neveu model in the large-N limit as well as the chiral condensate in the crystal phase.
Background The synchrony hypothesis postulates that precise temporal synchronization of different pools of neurons conveys information that is not contained in their firing rates. The synchrony hypothesis had been supported by experimental findings demonstrating that millisecond precise synchrony of neuronal oscillations across well separated brain regions plays an essential role in visual perception and other higher cognitive tasks [1]. Albeit, more evidence is being accumulated in favour of its role as a binding mechanism of distributed neural responses, the physical and anatomical substrate for such a dynamic and precise synchrony, especially zero-lag even in the presence of non-negligible delays, remains unclear. Here we propose a simple network motif that naturally accounts for zero-lag synchronization for a wide range of temporal delays [3]. We demonstrate that zero-lag synchronization between two distant neurons or neural populations can be achieved by relaying the dynamics via a third mediating single neuron or population. Methods We simulated the dynamics of two Hodgkin-Huxley neurons that interact with each other via an intermediate third neuron. The synaptic coupling was mediated through alpha-functions. Individual temporal delays of the arrival of pre-synaptic potentials were modelled by a gamma distribution. The strength of the synchronization and the phase-difference between each individual pairs were derived by cross-correlation of the membrane potentials. Results In the regular spiking regime the two outer neurons consistently synchronize with zero phase lag irrespective of the initial conditions. This robust zero-lag synchronization naturally arises as a consequence of the relay and redistribution of the dynamics performed by the central neuron. This result is independent on whether the coupling is excitatory or inhibitory and can be maintained for arbitrarily long time delays (see Fig. 1). Conclusion We have presented a simple and extremely robust network motif able to account for the isochronous synchronization of distant neural elements in a natural way. As opposed to other possible mechanisms of neural synchronization, neither inhibitory coupling, gap junctions nor precise tuning of morphological parameters are required to obtain zero-lag synchronized neuronal oscillation.
We investigate methods to improve the recall in coreference resolution by also trying to resolve those definite descriptions where no earlier mention of the referent shares the same lexical head (coreferent bridging). The problem, which is notably harder than identifying coreference relations among mentions which have the same lexical head, has been tackled with several rather different approaches, and we attempt to provide a meaningful classification along with a quantitative comparison. Based on the different merits of the methods, we discuss possibilities to improve them and show how they can be effectively combined.
We adopt Markert and Nissim (2005)’s approach of using the World Wide Web to resolve cases of coreferent bridging for German and discuss the strength and weaknesses of this approach. As the general approach of using surface patterns to get information on ontological relations between lexical items has only been tried on English, it is also interesting to see whether the approach works for German as well as it does for English and what differences between these languages need to be accounted for. We also present a novel approach for combining several patterns that yields an ensemble that outperforms the best-performing single patterns in terms of both precision and recall.
Mutual grooming in two genera of silvanid beetles is described, and appears to be the first report of this behavior in the order Coleoptera. In Uleiota debilis (LeConte), allogrooming recipients were either stationary or moved away during the acts, without solicitation or facilitation. In Nausibius major Zimmermann, allogrooming was much more extensive and the individual being groomed appeared to facilitate the process by immobility or by changes in posture, there were no recognizable sexual overtones, no solicitations, and no avoidance movements. Gregarious behaviors of some other silvanid beetles are reviewed.
University 2.0
(2007)
The major challenge facing universities in the next decade is to reinvent themselves as information organizations. Universities are, at their core, organizations that cultivate knowledge, seeking both to create new knowledge and to preserve and convey existing knowledge, but they are remarkably inefficient and therefore ineffective in the way that they leverage their own information resources to advance that core activity. This talk will explore ways that the university could learn from what is now widely called "Web 2.0" -- a term that is meant to identify a shift in emphasis from the computer as platform to the network as platform, from hardware to data, from the wisdom of the expert to the wisdom of crowds, and from fixity to remixability.
Background: Models of isolated and perfused kidneys are used to study the effects of drugs, hazardous or toxic substances on renal functions. Since physiological and morphological parameters of small laboratory animal kidneys are difficult to compare to human renal parameters, porcine kidney perfusion models have been developed to simulate closer conditions to the human situation, but exact values of renal parameters for different collection and perfusion conditions have not been reported so far. If the organs could be used out of regular slaughtering processes animal experiments may be avoided.
Methods: To assess renal perfusion quality, we analyzed different perfusion settings in a standardized model of porcine kidney hemoperfusion with organs collected in the operating theatre (OP: groups A-D) or in a public abattoir (SLA: group E) and compared the data to in vivo measurements in living animals (CON). Experimental groups had defined preservation periods (0, 2 and 24 hrs), one with additional albumin in the perfusate (C) for edema reduction.
Results: Varying perfusion settings resulted in different functional values (mean +/- SD): blood flow (RBF [ml/min*100 g]: (A) 339.9 +/- 61.1; (C) 244.5 +/- 53.5; (D) 92.8 +/- 25.8; (E) 153.8 +/- 41.5); glomerular filtration (GFR [ml/min*100 g]: (CON) 76.1 +/- 6.2; (A) 59.2 +/- 13.9; (C) 25.0 +/- 10.6; (D) 1.6 +/- 1.3; (E) 16.3 +/- 8.2); fractional sodium reabsorption (RFNa [%] (CON) 99.8 +/- 0.1; (A) 82.3 +/- 8.1; (C) 86.8 +/- 10.3; (D) 38.4 +/- 24.5; (E) 88.7 +/- 5.8). Additionally the tubular coupling-ratio of Na-reabsorption/O2-consumption was determined (TNa/O2-cons [mmol-Na/mmol- O2] (CON) 30.1; (A) 42.0, (C) 80.6; (D) 17.4; (E) 23.8), exhibiting OP and SLA organs with comparable results.
Conclusion: In the present study functional values for isolated kidneys with different perfusion settings were determined to assess organ perfusion quality. It can be summarized that the hemoperfused porcine kidney can serve as a biological model with acceptable approximation to in vivo renal physiology, also if the organs originate from usual slaughtering processes.
Background: Phototrophy of the extremely halophilic archaeon Halobacterium salinarum was explored for decades. The research was mainly focused on the expression of bacteriorhodopsin and its functional properties. In contrast, less is known about genome wide transcriptional changes and their impact on the physiological adaptation to phototrophy. The tool of choice to record transcriptional profiles is the DNA microarray technique. However, the technique is still rarely used for transcriptome analysis in archaea. Methodology/Principal Findings: We developed a whole-genome DNA microarray based on our sequence data of the Hbt. salinarum strain R1 genome. The potential of our tool is exemplified by the comparison of cells growing under aerobic and phototrophic conditions, respectively. We processed the raw fluorescence data by several stringent filtering steps and a subsequent MAANOVA analysis. The study revealed a lot of transcriptional differences between the two cell states. We found that the transcriptional changes were relatively weak, though significant. Finally, the DNA microarray data were independently verified by a real-time PCR analysis. Conclusion/Significance: This is the first DNA microarray analysis of Hbt. salinarum cells that were actually grown under phototrophic conditions. By comparing the transcriptomics data with current knowledge we could show that our DNA microarray tool is well applicable for transcriptome analysis in the extremely halophilic archaeon Hbt. salinarum. The reliability of our tool is based on both the high-quality array of DNA probes and the stringent data handling including MAANOVA analysis. Among the regulated genes more than 50% had unknown functions. This underlines the fact that haloarchaeal phototrophy is still far away from being completely understood. Hence, the data recorded in this study will be subject to future systems biology analysis.
It is commonplace to assert that the Book of Genesis in the Old Testament is based on an androcentric position. Although critics have tried to introduce some sort of female empowerment by reassessing various biblical stories (cf. Savina Teubal, 1984), Genesis remains a man's realm with only a limited female perspective. The case of Dinah's rape by Shechem in Genesis 34 illustrates the marginality of womanhood in the biblical world and theology. The pericope tells us that, while the Israelites are settled near the Hivite city of Shechem in Canaan, Jacob's and Leah's daughter Dinah goes out of the Israelite camp. She is raped by Shechem, the prince of the eponymous city, who then abducts her and makes her one of his household. A deal is concluded by Jacob's sons and the Shechemites, according to which the situation can be made legitimate through marriage if the men of Shechem circumcise themselves. While the Shechemites are weak at er the surgery, the Israelites sack the city, kill all the males and take Dinah back.
Modern retellings of the Flood pericope (Genesis 6–8) depend on the age of the targeted audience. Writing for adults, Wolfdietrich Schnurre, Brigitte Schär, Timothy Findley, and Anne Provoost ask whether universal annihilation can be justified. Their criticism of the divine notion that evil is universal and indiscriminate collective punishment is therefore justified, reveals values that are incompatible with those informing the original biblical narrative. However much modernity is aware that myths are symbolic, it apparently cannot assimilate their ethics without a critical reassessment. In this, modern writers rely on the realistic premises of modern novelistic narration. In contrast, modern retellings of the Flood story for children appear to be far more prepared to accept the ancient value system underlying the biblical narrative. Books for younger audiences seem to be much more comfortable with the notion of generalized evil and global punishment than works for adults. This becomes particularly striking in a number of picture books about Noah's ark. The narrative stance of writers ultimately depends on the way they perceive adulthood and childhood.
Siegfried Lenz's novel "Deutschstunde" is analyzed on the basis of work conducted by two American psychologists: Stanley Milgram and Lawrence Kohlberg. The concept of duty and obedience to authority are considered as social phenomena that go beyond personal disposition. The article uses Milgram's famous obedience experiment in order to consider the literary depiction of psychological processes underlying compliance with orders to commit reprehensible acts. A comparison is made between Jens Jepsen, the fictional obedient policeman in "Deutschstunde", and Paul Grueninger, a real policeman in wartime Switzerland, who refused to follow orders and saved many refugees at the Swiss-Austrian border.
This essay deals with two retellings of Genesis: Thomas Mann's "Joseph and his brothers" and Anita Diamant's "The red tent". Both authors note the presence of implicit pagan tendencies among the women of Jacob's clan (Gen 31:19; 35:2) and develop this subtext for their respective ideological purposes. Thomas Mann creates a dichotomy between the backwardness of the pagan female realm and the progressive nature of the monotheistically-oriented patriarchs. The path toward modern humanist values comes from the likes of Jacob and Joseph rather than Rachel and Leah in Mann's novel. Anita Diamant, on the other hand, adopts the opposite attitude, namely, that the paganism of Rachel, Leah, as well as other women in Jacob's family, is a humane and natural form of spirituality in contrast to the bloodthirsty Yahwism of Jacob and his sons. The latter point is illustrated by the sacking of Shechem. In order to question the patriarchal stance of the Old Testament Diamant reverses the key values informing the theology of the Bible. Thus, in "The red tent" Jacob's wives venerate the Ashera in particular. The latter constitutes a challenge to the stance of the Deuteronomic History where the cult of the Ashera is viewed as a key reason behind God's decision to let the Babylonians destroy the Southern Kingdom of Judah. And since Mann's novel upholds the patriarchal spirit of the biblical text, Diamant enters into debate with the continuity of female disempowerment which reaches all the way from Genesis to "Joseph and his brothers".
Defects in podocyte signaling are the basis of many inherited glomerular diseases leading to glomerulosclerosis. CD2-associated protein (CD2AP) is highly expressed in podocytes and is considered to play an important role in the maintenance of the glomerular slit diaphragm. Mice deficient for CD2AP (CD2AP(-/-)) appear normal at birth but develop a rapid onset nephrotic syndrome at 3 weeks of age. We demonstrate that impaired intracellular signaling with subsequent podocyte damage is the reason for this delayed podocyte injury in CD2AP(-/-) mice. We document that CD2AP deficiency in podocytes leads to diminished signal initiation and termination of signaling pathways mediated by receptor tyrosine kinases (RTKs). In addition, we demonstrate that CIN85, a paralog of CD2AP, is involved in termination of RTK signaling in podocytes. CIN85 protein expression is increased in CD2AP(-/-) podocytes in vitro. Stimulation of CD2AP(-/-) podocytes with various growth factors, including insulin-like growth factor 1, vascular endothelial growth factor, and fibroblast growth factor, resulted in a significantly decreased phosphatidylinositol 3-kinase/AKT and ERK signaling response. Moreover, increased CIN85 protein is detectable in podocytes in diseased CD2AP(-/-) mice, leading to decreased base-line activation of ERK and decreased phosphorylation after growth factor stimulation in vivo. Because repression of CIN85 protein leads to a restored RTK signaling response, our results support an important role of CD2AP/CIN85 protein balance in the normal signaling response of podocytes.
We explain how fluctuations of ratios can constrain and falsify the statistical model of particle production in heavy ion collisions, using K/p fluctuations as an example. We define an observable capable of determining which statistical model, if any, governs freeze-out in ultrarelativistic heavy ion collisions. We calculate this observable for K/p fluctuations, and show that it should be the same for RHIC and LHC energies, as well as independent of centrality, if the Grand-Canonical statistical model is an appropriate description and chemical equilibrium applies. We describe variations of this scaling for deviations from this scenario, such as light quark chemical non-equilibrium, strange quark over-saturation and local conservation (canonical ensemble) for strange quarks. We also introduce a similar observable capable, together with the published K*/K measurement, of ascertaining if an interacting hadron gas phase governs the system between thermal and chemical freeze-out, and of ascertaining its duration and impact on hadronic chemistry.
While the Information Structure (IS) is most naturally interpreted as "structure of information", some may argue that it is structure of something else, and others may object to the use of the word "structure". This paper focuses on the question of whether the informational component can have structural properties such that it can be called "structure". The preliminary conclusion is that, althoughthere are some vague indications of structurehood in it, it is perhaps better understood to be a representation that encodes a finite set of information-based partitions, rather than structure.
Proton pumping respiratory complex I is a major player in mitochondrial energy conversion. Yet little is known about the molecular mechanism of this large membrane protein complex. Understanding the details of ubiquinone reduction will be prerequisite for elucidating this mechanism. Based on a recently published partial structure of the bacterial enzyme, we scanned the proposed ubiquinone binding cavity of complex I by site-directed mutagenesis in the strictly aerobic yeast Yarrowia lipolytica. The observed changes in catalytic activity and inhibitor sensitivity followed a consistent pattern and allowed us to define three functionally important regions near the ubiquinone-reducing iron-sulfur cluster N2. We identified a likely entry path for the substrate ubiquinone and defined a region involved in inhibitor binding within the cavity. Finally, we were able to highlight a functionally critical structural motif in the active site that consisted of Tyr-144 in the 49-kDa subunit, surrounded by three conserved hydrophobic residues.
Membrane proteins play vital role in a variety of cellular processes, such as signal transduction, transport and recognition. In turn they are involved in numerous human diseases and currently represent one of the most prevalent drug targets. A comprehensive understanding of the mechanisms mediated by membrane proteins requires information about their structures at near-atomic resolution, although structural studies of membrane proteins remain behind those of soluble proteins. A bottleneck in the study of membrane proteins resides in the difficulties that are encountered during their high-level production in cell based systems. However, many toxic effects attributed to the over production of membrane proteins are eliminated by cell-free expression, as viable host cells are no longer required. Therefore, the objective of this study was to obtain adequate amounts of selected membrane transport proteins for their structural studies using a cell-free expression system. For the establishment of the cell-free system for membrane proteins, the transporters YbgR and YiiP from Salmonella typhimurium LT2, PF0558 and PF1373 from Pyrococcus furiosus, from the cation diffusion family (CDF), BetP from Corynebacterium glutamicum from the betaine/carnitine/choline transporter (BCCT) family and Aq-2030 from Aquifex aeolicus VF5 from the monovalent cation/proton antiporter-2 (CPA2) family were selected. An Escherichia coli S-30 extract based cellfree system was established by generating the best expression constructs of the target proteins, preparing T7 RNA polymerase and an S-30 extract with high translation efficiency. The functionality of the S-30 extract was shown by the cell-free expression of correctly folded Green Fluorescent Protein (GFP). Essential factors of the cell-free system such as the Mg2+ concentration, the bacterial S-30 extract proportion in the reaction mixture and the time-course of cell-free reactions have been optimized. For the cell-free production of membrane proteins in soluble form, the possibility to supplement cell-free reactions with detergents was explored. A wide range of non-ionic or zwitterionic detergents, were found to be compatible with cell-free synthesis, while ionic detergents and non-ionic detergents at high concentrations had an inhibitory effect. Moreover, high concentrations of polyoxyethylene-alkyl-ethers (Brij) detergents were found to have enhancing effect on the production levels as well as on the solubility of cell-free produced proteins. As membrane proteins tend to misfold and aggregate in a membrane-free translation system, the possibility to supplement the cell-free reactions with inner membrane vesicles (IMVs) to obtain correctly folded target transport proteins was explored. All the target proteins were successfully produced in the batch cell-free reactions and were found to be incorporated in the IMVs. A continuous exchange cell-free (CECF) system was established, where consumable substrates (amino acids, nucleotides and energy regenerating compounds) were supplied to the cell-free reaction mixture through a dialysis membrane, which in consequence resulted in high-level production of target proteins compared to the batch system. The osmosensing and osmoregulated sodium-coupled symporter BetP from C. glutamicum was chosen for the large scale production in CECF set-up. The protein is easily produced in E. coli and is functional as assayed by its transport activity, after purification and reconstitution in liposomes. It is therefore possible to compare in-vivo and cell-free production. High-level cell-free production of BetP was achieved in CECF mode in different forms: (i) as precipitate, (ii) as soluble form in detergent, and (iii) incorporated in IMVs. Cell-free production of BetP resulted in the yield of about 0.5 mg of purified BetP from 1 ml of CECF reaction. The yield of purified BetP was increased to 1.6 fold by addition of 1% polyoxyethylene-(20)-cetyl-ether (Brij58) detergent in the reaction mixture. Moreover, the high level cell-free production of BetP (0.5 mg purified BetP/ml reaction mixture) incorporated in IMVs was shown for the first time in this work.However, it was observed that oligomerization of BetP was not efficient in the cell-free system. Factors that can promote the folding of membrane proteins such as lipids and chaperones were investigated. Addition of lipids and molecular chaperone GroE facilitated correct folding of BetP resulting in increased yield and stability of cell-free produced BetP. The results obtained indicate that most of the cell-free produced BetP exists in functional oligomeric form. The possibility of obtaining milligram amounts of BetP, a 12 trans-membrane protein from the cell-free reactions holds promise for structural and functional studies of other membrane proteins. In any case, the strategies adapted in this study should prove extremely valuable for the production of membrane proteins in the E. coli cell-free expression system.
First milestone of this Ph.D. thesis was the successful extension of conventional NTA/His-tag technique to self-assembling, multivalent chelator thiols for high-affinity recognition as well as stable and uniform immobilization of His-tagged proteins on chip surfaces. Bis-NTA was linked via an oligoethylene glycol to alkyl thiols by an efficient modular synthesis strategy yielding a novel, multivalent compound for formation of mixed SAMs with anti-adsorptive matrix thiols on gold. Multivalent chelator chips allow a specific, high-affinity, reversible, long-term immobilization of His-tagged proteins. In AFM studies reversibility of the specific protein immobilization process was visualized at single molecule level. The entire control over the orientation of the immobilized protein promotes this chip surface to an optimal platform for studies focusing on research targets at single molecule level and nanobiotechnology. Based on the constructed protein chip platform above and a novel AFM mode (contact oscillation mode, COM) – developed during the current Ph.D. work – protein nanolithography under physiological conditions enabling fabrication of active biomolecular patterns in countless variety has been established. Reversible COM-mediated nanostructuring is exceptionally suitable for multiplexed patterning of protein assemblies in situ. The first selfassembled protein layer acts as a biocompatible and ductile patterning material. Immobilized proteins can be replaced by the AFM tip applying COM, and the generated structures can be erased and refilled with different proteins, which are immobilized in a uniform and functional manner. Multi-protein arrays can be systematically fabricated by iterative erase-and-write processes, and employed for protein-protein interaction analysis. Fabrication of two-dimensionally arranged nanocatalytic centres with biological activity will establish a versatile tool for nanobiotechnology. As an alternative chip fabrication approach, the combined application of methodologies from surface chemistry, semiconductor technology, and chemical biology demonstrated successfully how pre-patterned templates for micro- and nanoarrays for protein chips are fabricated. The surface physical, as well the biophysical experiments, proved the functionality of this technology. The promises of such process technology are fast and economic fabrication of ready-to-use nanostructured biochips at industrial scale. Membrane proteins are complicated in handling and hence require sophisticated solutions for chip technological application. A silicon-on-insulator (SOI) chip substrate with microcavities and nanopores was employed for first technological investigation to construct a protein chip suitable for membrane proteins. The formation of an artificial lipid bilayer using vesicle fusion on oxidized SOI cavity substrates was verified by CLSM. Future AFM experiments will give further insights into the chip architecture and topography. This will provide last evidence of the sealing of the cavity by the lipid bilayer. Transmembrane proteins will be employed for reconstitution experiments on this membrane protein chip platform. Highly integrated microdevices will find application in basic biomedical and pharmaceutical research, whereas robust and portable point-of-care devices will be used in clinical settings.
Chemical ozone loss in winter 1991–1992 is recalculated based on observations of the HALOE satellite instrument, ER-2 aircraft measurements and balloon data. HALOE satellite observations are shown to be reliable in the lower stratosphere below 400 K, at altitudes where profiles are most likely disturbed by the enhanced sulfate aerosols, as a result of the Mt. Pinatubo eruption in June 1991. Very large chemical ozone loss was observed below 400 K from Kiruna balloon observations between December and March 1992. Additionally, for the two winters after the Mt. Pinatubo eruption, HALOE satellite observations show a stronger extent of chemical ozone loss at lower altitudes compared to other Arctic winter between 1991 and 2003. In stipe of already occurring deactivation of chlorine in March 1992, Mipas-B and LPMA balloon observations indicate still chlorine activation at lower altitudes, consistent with observed chemical ozone loss occurring between February and March and April. Enhanced chemical ozone loss in the Arctic winter 1991–1992 as calculated in earlier studies is corroborated here.
In the diazotroph Klebsiella pneumoniae the flavoprotein NifL inhibits the activity of the nif-specific transcriptional activator NifA in response to molecular oxygen and combined nitrogen. Sequestration of reduced NifL to the cytoplasmic membrane under anaerobic and nitrogen-limited conditions impairs inhibition of cytoplasmic NifA by NifL. To analyze whether NifL is reduced by electrons directly derived from the reduced menaquinone pool, we studied NifL reduction using artificial membrane systems containing purified components of the anaerobic respiratory chain of Wolinella succinogenes. In this in vitro assay using proteoliposomes containing purified formate dehydrogenase and purified menaquinone (MK6) or 8-methylmenaquinone (MMK6) from W. succinogenes, reduction of purified NifL was achieved by formate oxidation. Furthermore, the respective reduction rates, which were determined using equal amounts of NifL, have been shown to be directly dependent on the concentration of both formate dehydrogenase and menaquinones incorporated into the proteoliposomes, demonstrating a direct electron transfer from menaquinone to NifL. When purified hydrogenase and MK6 from W. succinogenes were inserted into the proteoliposomes, NifL was reduced with nearly the same rate by hydrogen oxidation. In both cases reduced NifL was found to be highly associated to the proteoliposomes, which is in accordance with our previous findings in vivo. On the bases of these experiments, we propose that the redox state of the menaquinone pool is the redox signal for nif regulation in K. pneumoniae by directly transferring electrons onto NifL under anaerobic conditions.
Mesenchymal stem cells (MSC), also referred to as marrow stromal cells, maintain the capacity to differentiate into multiple mesenchymal lineages such as osteoblasts, chondrocytes, adipocytes, myoblasts, stromal, neural and endothelial cells. The use of autologous MSC has generated widespread interest due to their developing application in regenerative medicine and tissue engineering in orthopedic surgery. They have become an indispensable cell source for successful implementation in many bone reconstruction procedures. In addition to their multipotency and selfrenewal capacity, they are easily harvested, have demonstrated a homing mechanism and can be efficiently expanded in vitro, thus providing a safe and costefficient tissue replacement for patients with skeletal injury or disease. Little information is currently available concerning donor characteristics for tissue engineering growth of osseous tissue. This study examines the influences of such donor characteristics, including injury pattern, gender, age, and site of harvest on the quantity, quality and osteogenic differentiation of MSC. The goal is to evaluate whether certain patient groups are practically suitable for an ex vivo expansion and therapeutic reimplantation of MSC. The effect of injury pattern on the reservoir and proliferative capacity of MSC in human bone marrow is clearly demonstrated in this analysis. Age and gender were also shown to influence MSC number and proliferation, as in previous studies. A total of 53 participants (46 patients and 7 healthy volunteers ranging from 18 to 64 years of age), who were scheduled to undergo operative procedures on the pelvis, vertebrae, tibia or hip as well as cancellous bone autografts for reconstruction of various bone defects, were included in the study. Participants were divided into 4 groups for each gender: single fracture, multiple trauma, atrophic nonunion and healthy volunteers. A minimum of 6 ml bone marrow samples were aspirated intraoperatively and processed immediately according to protocol. Following cultivation and expansion for 14 days, the cells were then stained for the colony forming unit-fibroblast (CFU-F) assay and each culture flask was photographed, digitized and converted to an 8 bit grey level TIF-format. Using the digitized CFU-F assay, the mean colony number, mean colony area and mean cell number per microscopic field of view (cell density) could be determined. In addition, confirmation of MSC phenotype was established using fluorescent activated cell sorting (FACS). MSC potential for osteogenic differentiation was quantified by von Kossa, alkaline phosphatase and alizarin staining. Furthermore, serum from a total of 39 randomly chosen participants was collected and tested for hormone levels of 17β-estradiol, testosterone and prolactin as well as the cytokine interleukin-6. These analyses demonstrate several significant trauma-related modifications in MSC reservoir and proliferation, in both male and female patients. In multiple trauma patients, the highest MSC frequency was found, independent of gender and age. Proliferative capacity was also highest in male multiple trauma patients. In the case of atrophic nonunion, the lowest MSC reservoir was detected, independent of gender. Furthermore, MSC frequency in male patients was significantly higher than in female, although analyses of hormone and interleukin-6 levels provided no correlation. Agerelated changes in MSC reservoir could also be observed, whereas the proliferative capacity produced only a tendency toward decreasing values with increasing age. Concerning the site of cell harvest, MSC isolated from the proximal extremity of the tibia, greater trochanter and vertebral body did not proliferate sufficiently enough to be included in statistical analysis, supporting the use of the iliac crest for efficient expansion of MSC. This data suggests the interaction of yet to be identified processes in bone marrow in multiple trauma situations which stimulate the activation and mobilization of MSC. Moreover, in the case of atrophic nonunion, the concentration in bone marrow is depleted and the absence of systemic stimulation present in multiple trauma results in reduced activation of proliferative capacity. Such patients, with severe injury or atrophic nonunion, represent a group of patients with an especially acute necessity for effective and successful bone reconstruction. This data can be used to determine the applicability of MSC from various patient groups for osseous tissue replacement procedures. Especially in such medically challenging situations, further research is essential not only to delineate the factors involved in MSC regulation but also to develop methods to stimulate MSC expansion and proliferation.
No Turning Back relives the tumultuous beginnings of Africa's democratization experiment in the early 1990s. The main theme of the collection is an investment in hope and in the resilience of Africans. The poems are loud and clear in their castigation of dictatorship and its miseries. They celebrate the mass resolve and thirst for democracy by Africans for whom there is 'No turning back!' 'A lucid and truly memorable collection of poems. Dibussi forces us to turn back and look at the pivotal volcanic moments in Cameroon's history between 1990- 1993... As a student activist and budding journalist during this historic period, Dibussi captures cadences of this struggle eloquently.' Joyce Ashuntantang, Ph.D., Department of English, University of Connecticut, Greater Hartford, USA. 'This collection is an important document chronicling, through verse, the events of an era in a given space with unmitigated passion.' Kangsen Wakai, poet, Houston, Texas, USA '. a subtle yet unapologetic critique of Cameroon's chequered history of predatory governance. The poems provide succor to a people besieged first by the unrealised dreams of a political (mis)marriage and then a false promissory note on which their democratic development is written.' George Ngwane, Chair, National Book Development Council - Cameroon
The Uncertainty of Hope
(2007)
The Uncertainty of Hope by Valerie Tagwira, a novel which Charles Mungoshi calls 'an astonishing debut'. Through the various and complex lives of Onai Moyo - a market woman and responsible mother of three children, and her best friend Katy Nguni - a vendor and black-market currency dealer - we are given an insight into the challenges that face those who only survive by their wits, their labour and their mutual support. In doing so Tagwira aptly captures how precarious the future is for the inhabitants of Mbare, Zimbabwe in 2005. The story of these two close friends is situated in a high-density suburb. However, the author also introduces a much wider cross-section of Zimbabwean society: Tom Sibanda, a young business man and farmer, his girlfriend, Faith, a law student, Tom's sister Emily, a health professional, and Mawaya, the ostensible beggar. With depth and sensitivity, Tagwira pulls these many threads into a densely woven novel that provides us with of some of the many faces of contemporary Zimbabwe.
Complement control is a well-known phenomenon in Turkish linguistics, and different proposals for analysing it are available. The majority of these treat control as a structural phenomenon, cf. Kerslake (1987), Özsoy (1987; 2001) and Kural (1998). In sum, control is predicted only in sentences with complement clauses formed with the suffixes -mEk and -mE, which can be case-marked, but the appearance of a possessive marker definitely precludes control. As far as the control relations are concerned, the research so far has attested the classical cases of subject and object control. In addition to that, variable control is discussed by Taylan (1996). The status of the controlled element is discussed by Bozşahin (in press), which concludes that the syntactic subject is appointed by this function in Turkish.
In this paper I will argue that the currently established approach to control is insufficient. The shortcomings of a strictly configurational approach become clear if a broader perspective on control is adopted. I follow the approach to control outlined by Stiebels (this volume), and show that two types of control must be distinguished. Inherent control is encoded in the lexical entry of the verb. Verbs which show inherent control either select only control-inducing structures or trigger control in environments not requiring control. Structural control, on the other hand, arises through the use of a control-inducing structure with a verb which does not inherently require control. Structural control verbs show control only with control-inducing structures. No control occurs with such verbs in other configurations. The data discussed in this paper will show that control is a ‘mixed’ phenomenon, since it may arise structurally or semantically. Its explanation must therefore consider the semantics of the relevant matrix verbs and the syntactic properties of complement clauses on an equal basis.
The search for a modification of hadron properties inside nuclear matter at normal and/or high temperature and density is one of the more interesting issues of modern nuclear physics. Dilepton experiments, by providing interesting results, give insight into the properties of strong interaction and the nature of hadron mass generation. One of these research tools is the HADES spectrometer. HADES is a high acceptance dilepton spectrometer installed at the heavy-ion synchrotron (SIS) at GSI, Darmstadt. The main physics motivation of HADES is the measurement of e+e- pairs in the invariant-mass range up to 1 GeV/c2 in pion- and proton-induced reactions, as well as in heavy-ion collisions. The goal is to investigate the properties of the vector mesons rho, omega and of other hadrons reconstructed from e+e- decay pairs. Dileptons are penetrating probes allowing to study the in-medium properties of hadrons. However, the measurement of such dilepton pairs is difficult because of a very large background from other processes in which leptons are created. This thesis presents the analysis of the data provided by the first physic run done with the HADES spectrometer. For the first time e+e- pairs produced in C+C collisions at an incident energy of 2 GeV per nucleon have been collected with sufficient statistics. This experiment is of particular importance since it allows to address the puzzling pair excess measured by the former DLS experiment at 1.04 AGeV. The thesis consists of five chapters. The first chapter presents the physics case which is addressed in the work. In the second chapter the HADES spectrometer is introduced with the characteristic of specific detectors which are part of the spectrometer. Chapter three focusses on the issue of charged-particle identification. The fourth chapter discusses the reconstruction of the di-electron spectra in C+C collisions. In this part of the thesis a comparison with theoretical models is included as well. The conclusion and final remarks are given in chapter five.
Background During gram-negative sepsis, lipopolysaccharide (LPS) induces tissue factor expression on monocytes. The resulting disseminated intravascular coagulation leads to tissue ischemia and worsens the prognosis of septic patients. There are indications, that fever reduces the mortality of sepsis, the effect on tissue factor activity on monocytes is unknown. Therefore, we investigated whether heat shock modulates LPS-induced tissue factor activity in human blood. Methods Whole blood samples and leukocyte suspensions, respectively, from healthy probands (n = 12) were incubated with LPS for 2 hours under heat shock conditions (43°C) or control conditions (37°C), respectively. Subsequent to further 3 hours of incubation at 37°C the clotting time, a measure of tissue factor expression, was determined. Cell integrity was verified by trypan blue exclusion test and FACS analysis. Results Incubation of whole blood samples with LPS for 5 hours at normothermia resulted in a significant shortening of clotting time from 357 ± 108 sec to 82 ± 8 sec compared to samples incubated without LPS (n = 12; p < 0.05). This LPS effect was mediated by tissue factor, as inhibition with active site-inhibited factor VIIa (ASIS) abolished the effect of LPS on clotting time. Blockade of protein synthesis using cycloheximide demonstrated that LPS exerted its procoagulatory effect via an induction of tissue factor expression. Upon heat shock treatment, the LPS effect was blunted: clotting times were 312 ± 66 s in absence of LPS and 277 ± 65 s in presence of LPS (n = 8; p > 0.05). Similarly, heat shock treatment of leukocyte suspensions abolished the LPS-induced tissue factor activity. Clotting time was 73 ± 31 s, when cells were treated with LPS (100 ng/mL) under normothermic conditions, and 301 ± 118 s, when treated with LPS (100 ng/mL) and heat shock (n = 8, p < 0.05). Control experiments excluded cell damage as a potential cause of the observed heat shock effect. Conclusion Heat shock treatment inhibits LPS-induced tissue factor activity in human whole blood samples and isolated leukocytes.
Relying on the existing estimates for the production cross sections of mini black holes in models with large extra dimensions, we review strategies for identifying those objects at collider experiments. We further consider a possible stable final state of such black holes and discuss their characteristic signatures. Keywords: Black holes
We discuss the present collective flow signals for the phase transition to quark-gluon plasma (QGP) and the collective flow as a barometer for the equation of state (EoS). A study of Mach shocks induced by fast partonic jets propagating through the QGP is given. We predict a significant deformation of Mach shocks in central Au+Au collisions at RHIC and LHC energies as compared to the case of jet propagation in a static medium. Results of a hydrodynamical study of jet energy loss are presented.
We discuss the present collective flow signals for the phase transition to the quark-gluon plasma (QGP) and the collective flow as a barometer for the equation of state (EoS). We emphasize the importance of the flow excitation function from 1 to 50A GeV: here the hydrodynamicmodel has predicted the collapse of the v1-flow at ~ 10A GeV and of the v2-flow at ~ 40A GeV. In the latter case, this has recently been observed by the NA49 collaboration. Since hadronic rescattering models predict much larger flow than observed at this energy, we interpret this observation as potential evidence for a first order phase transition at high baryon density pB.
Scholars of institutional design attribute large importance to the choice of new institutions. The comparative analysis of how Rwanda and Zambia crafted their new electoral systems and the systems of government regards procedural, structural and rational choice variables which may influence the option for particular solutions. External influences and the type of transition are determinants that can decide which actors make their interests prevail. The degree of innovation or conservatism of new institutions is mainly a result of the speed of the process and the kind of actors involved. However, rational reflections on how to produce legitimacy and minimize personal risks which take into consideration the state of conflict in the country decide on the speed and on innovative outcomes. The structured analysis of only two cases uncovers already that it is rather difficult to realise the transfer of design recommendations into reality.
I discuss the physics of non-Abelian plasmas which are locally anisotropic in momentum space. Such momentum-space anisotropies are generated by the rapid longitudinal expansion of the matter created in the first 1 fm/c of an ultrarelativistic heavy ion collision. In contrast to locally isotropic plasmas anisotropic plasmas have a spectrum of soft unstable modes which are characterized by exponential growth of transverse chromo-magnetic/-electric fields at short times. This instability is the QCD analogue of the Weibel instability of QED. Parametrically the chromo-Weibel instability provides the fastest method for generation of soft background fields and dominates the short-time dynamics of the system. The existence of the chromo-Weibel instability has been proven using diagrammatic methods, transport theory, and numerical solution of classical Yang-Mills fields. I review the results obtained from each of these methods and discuss the numerical techniques which are being used to determine the late-time behavior of plasmas subject to a chromo-Weibel instability.
The multiplicity of hadronic species created in elementary, and in nucleus-nucleus collisions, are known to be well reproduced by the statistical hadronization model, in its canonical and grand-canonical versions.To understand the origin of the implied equilibrium we revisit the hadronization models developed for e+e- annihilation to hadrons which imply spatial color pre-confinement clusters forming at the end of the pQCD evolution, which decays into on-shell hadrons/resonances. The classical ensemble description arises as a consequence of decoherence and phase space dominance during cluster formation, and decay.For A+A collisions we assume that hadronization occurs from similar singlet clusters which will overlap spatially owing to the extreme density. This is imaged in the transition to the grand-canonical ensemble.This transition sets in with increasing A and collision centrality. It can be described by a percolation model.
This questionnaire focuses on control structures that are instantiated by predicates that take a state of affairs (SOA) argument. Noonan (1985) has called these predicates 'complement-taking predicates'; I will use the notion of SOAAtaking predicates (SOAA = state of affairs argument).
Prototypically, complement control is instantiated by certain classes of verbs; however, adjectives (be eager to) and nouns (e.g. nominalizations such as promise) may function as control predicates as well. 'Control' refers to the pattern of argument identification between an argument of the SOAA-taking predicate and an argument of the SOAA-head. In the literature the notion of 'equi deletion' or 'equi-NP deletion' has been used (following Rosenbaum 1967), which refers to structures in which an overt argument of the matrix predicate is identified with a covert argument of the embedded predicate. This questionnaire aims at a cross-linguistic application of the notion of control and thus uses a semantic definition of complement control. It extends the notion of control to other patterns of referential dependency between arguments of a SOAA-taking predicate and of the embedded predicate.
The pathogenic spirochete Leptospira interrogans disseminates throughout its hosts via the bloodstream, then invades and colonizes a variety of host tissues. Infectious leptospires are resistant to killing by their hosts' alternative pathway of complement-mediated killing, and interact with various host extracellular matrix (ECM) components. The LenA outer surface protein (formerly called LfhA and Lsa24) was previously shown to bind the host ECM component laminin and the complement regulators factor H and factor H-related protein-1. We now demonstrate that infectious L. interrogans contain five additional paralogs of lenA, which we designated lenB, lenC, lenD, lenE and lenF. All six genes encode domains predicted to bear structural and functional similarities with mammalian endostatins. Sequence analyses of genes from seven infectious L. interrogans serovars indicated development of sequence diversity through recombination and intragenic duplication. LenB was found to bind human factor H, and all of the newly-described Len proteins bound laminin. In addition, LenB, LenC, LenD, LenE and LenF all exhibited affinities for fibronectin, a distinct host extracellular matrix protein. These characteristics suggest that Len proteins together facilitate invasion and colonization of host tissues, and protect against host immune responses during mammalian infection.
Children […] growing up with highly inflected languages such as Modern Greek will frequently hear different grammatical forms of a given lexeme used in different grammatical and semantic-pragmatic contexts. In spite of the fact that the Greek noun is not as highly inflected as the verb, acquisition of nominal inflection of this inflecting-fusional language is quite complex, comprising the three categories of case, number, and gender. As is usual in this type of language, the formation of case-number forms obeys different patterns that apply to largely arbitrary classes of nominal lexemes partially based on gender. Further, frequency of the occurrence of the three gender classes and case-number forms of nouns greatly differs in spoken Greek, regarding both the types and tokens. […] [A] child learning an inflecting-fusional language like Greek must construct different inflectional patterns depending not only on parts of speech but also on subclasses within a given part of speech, such as gender classes of nouns and inflectional classes within or (exceptionally) across genders. It is therefore to be expected that the early development of case and number distinctions will apply to specific nouns and subclasses of nouns rather than the totality of Greek nouns. The two main theoretical approaches of morphological development that will be discussed in the present paper are the usage-based approach and the pre- and protomorphology approach.
G-protein coupled receptors (GPCRs) comprise the largest superfamily of cell surface receptors and possess a signature motif of seven transmembrane helices. The endothelin B (ETB) receptor is a member of rhodopsin like GPCR family. It plays an important role in vasodilation and is found in the membranes of the endothelial cells enveloping blood vessels. Knowledge of the three-dimensional structure of G-protein coupled receptors in general would significantly add to our understanding of their molecular mechanisms and would be useful in the search for new specific drugs. However, three-dimensional structural analysis will require milligram quantities of pure and homogeneous protein. This dissertation is a study of the production, biochemical characterization and preliminary structural studies of the human ETB G-protein coupled receptor. The present work aimed at elucidating the structure and mechanistic details of function of the receptor by using a combination of X-ray crystallographic and NMR methods for collecting structural data. To obtain homogenous and monodisperse receptor protein preparation for structural and functional studies, we implemented the baculovirus expression system for the production of ETB receptor for the present work. The two step affinity purification ensured capture of full-length receptor. Silver stained SDS-PAGE of the purified receptor-ligand complex indicated greater than 90% protein purity. Based on previous reports, we used the high affinity ligand (endothelin -1) binding to the receptor for co-crystallization of receptor-ligand complex by locking the receptor in the activated conformation. As a prerequisite for 3D crystallization trials, the stability of the detergent solubilized receptor-ligand complex was assessed with respect to pH, temperature and time. Receptor-ligand complex did not show any degradation and aggregation over 6 days at 4°C and 18°C. Interestingly, change of pH suggested that receptor-ligand complex is unstable at lower pH due to possible charge induced conformational changes. In our work, we introduced the idea of using fluorophore labeled ligand for simple visual recognition of the receptor-ligand complex during purification and crystallization. On the other hand, we alternatively used biotinylated endothelin-1 to produce an adequate amount of ligand bound receptor complex, thus ensuring homogeneity of the purified complex for use in structural studies. Thus far, preliminary crystals have been obtained for both the unlabelled ET-1 and fluorophore labeled ET-1 complexed with ETB receptor. Moreover, we performed the systematic investigation of the protein/peptide binding partner for the receptor-ligand complex with the chief aims of stabilizing structure and increasing the possibilities of 3D-crystal contacts. Thus subsequent to formation of receptor-ligand complex, the additional in vitro formation of a ternary arrestin-receptor-ligand complex was also attempted for use in structural studies. We successfully demonstrated that arrestin mutant (R169E) forms a tight complex with ETB receptor regardless of its phosphorylation state. A second approach to get insight into the ETB receptor ligand binding site relied on the use of spin isotope labeled ET-1 ligand peptide by employing solid state MAS NMR method. Preliminary data provided compelling evidence that the C-terminal region of the peptide is immobilized in an ordered environment and presumably bound to the receptor. This indicates that the approach is feasible, although there are difficulties in sample preparation for further spectral measurements and data collection which are currently being discussed in ongoing investigations. At this point of our research work, we initiated a collaborative effort to obtain high yields of pure, active receptor without post translational modifications, from an E. coli cell lysate based in vitro expression system. We successfully optimized the production of homogenous and monodisperse endothelin B receptor in mg amounts. Thus this could potentially provide an alternative source of high quality receptor production in large quantities for immediate crystallization trials. Thus we hope that the results from these investigations can be applied in a more general sense to the production and crystallization of other G protein-coupled receptors.
The naturalist Edward Newman did not provide an etymology for the mecopteran Merope tuber when he described it in 1838. In 1872 Asa Fitch asserted that the genus was named after Merope one of the Pleiades sisters of Greek mythology; however, he provided no reason for his assumption. We researched several etymological alternatives. We concur with Fitch and conclude that Newman did indeed name the genus Merope after the dullest of the Pleiades sisters.
Jan Snyman papers
(2007)
Biographical history and context: Professor Jan Snyman spent most of his life researching the lesser known and marginalised San languages of Botswana and South West Africa (now Namibia). Together with O. Kohler, E. Westphal and A. Traill, he pioneered linguistic studies on these endangered languages of Africa. He contributed significantly in collection of the data that helped classify and understand the grammar of San languages. Snyman also wrote several grammars in the form of monographs and notes on these languages. By the time he died, in 2002, a draft for the Tshwaa and Kua languages had been completed. Content: Linguistic, phonetics and orthography research materials including fonts for phonetic languages. Covering dates: 1967-2000
cGMP- and cAMP-dependent protein kinases (cGK and cAK) mediate the inhibitory effects of endothelium-derived messenger molecules nitric oxide and prostacyclin on platelets. To understand the mechanisms involved in platelet inhibition we searched for new substrates of cGK and cAK. We identified Rap1GAP2, the only GTPase-activating protein of Rap1 in platelets. Rap1 is a guanine-nucleotide binding protein that controls integrin activity, platelet adhesion and aggregation. Rap1GAP2 is required to turn over Rap1-GTP to Rap1-GDP resulting in the inactivation of integrins and reduced cellular adhesion. Using phospho-specific antibodies we demonstrate phosphorylation of endogenous Rap1GAP2 on serine 7 by cGK and cAK in intact platelets. Yeast-two-hybrid screening revealed an interaction of the phosphoserine/-threonine binding adapter protein 14-3-3 with Rap1GAP2, and we mapped the 14-3-3 binding site to the N-terminus of Rap1GAP2 close to the cGK/cAK phosphorylation site. We could show that 14-3-3 binding to Rap1GAP2 requires phosphorylation of serine 9. Platelet activation by ADP and thrombin treatment induces Rap1GAP2 serine 9 phosphorylation and enhances the attachment of 14-3-3 to Rap1GAP2. In contrast, phosphorylation of serine 7 by cGK/cAK leads to the detachment of 14-3-3. Furthermore, Rap1GAP2 serine 7 phosphorylation correlates with the inhibition of Rap1-GTP formation by cGMP and cAMP in platelets. Cell adhesion experiments provide additional evidence that Rap1GAP2 is activated by the detachment of 14-3-3. Point mutants of Rap1GAP2 deficient in 14-3-3 binding inhibit Rap1-mediated cell adhesion significantly stronger than a Rap1GAP2 mutant that binds 14-3-3 constitutively. Our findings define a novel regulatory mechanism that might contribute to both platelet activation and endothelial inhibition of platelet adhesion and aggregation.
It Happened in Ghana carries a positive message. Conceived as a literary work, it demonstrates that racial prejudice based on skin colour is not a pervasive and unalterable human condition. The principal characters who are both Black and White are embroiled in various encounters, notably wars, slave trade, colonialism and post colonial reconstruction. Regardless of their skin colour and cultural differences, they make friends or fall in love secretly during these encounters. When they are forced to part company by the cessation of hostilities or whatever brought them together, they serve in various capacities in new locations outside their original places of domicile. They are accepted or integrated into existing social structures because of the warmth oftheir personalities and the manner in which they are able to adjust themselves to the pressures and challenges of new environments. Changes in the circumstances of the principal characters or their descendants enable them not only to restore broken relationships but also to identify themselves with the cause of freedom and justice or to reconnect in various ways with the development aspirations of Ghana where it all started.
The potential use of variola virus, the causative agent of smallpox, as a bioweapon and the endemic presence of monkeypox virus in Africa demonstrate the need for better therapies for orthopoxvirus infections. Chemotherapeutic approaches to control viral infections have been less successful than those targeting bacterial infections. While bacteria commonly reproduce themselves outside of cells and have metabolic functions against which antibiotics can be directed, viruses replicate in the host cells using the cells' metabolic pathways. This makes it very difficult to selectively target the virus without damaging the host. Therefore, the development of antiviral drugs against poxviruses has initially focused on unique properties of the viral replication cycle or of viral proteins that can be selectively targeted. However, recent advances in molecular biology have provided insights into host factors that represent novel drug targets. The latest anti-poxvirus drugs are kinase inhibitors, which were originally developed to treat cancer progression but in addition block egress of poxviruses from infected cells. This review will summarize the current understanding of anti-poxvirus drugs and will give an overview of the development of the latest second generation poxvirus drugs.
This article outlines changes in procedures and production policies for the journal Insecta Mundi. Background data and discussions leading to these necessary changes are explained. Updated instructions for authors are presented. A full current version of author instructions will be posted on the latest Center for Systematic Entomology URL.
This preliminary checklist of Aphodiini south of the United States is prepared to provide published data for a future web-based checklist of all New World Aphodiinae. All species names are used in combination with their currently accepted generic name, creating many new combinations. A few genus-species combinations are discussed. New synonymies based on recent studies of type specimens are made: Aphodius azteca Harold = Aphodius multimaculosus Hinton; Aphodius ornatus Schmidt = Aphodius magnopunctatus Hinton; Aphodius caracaensis Petrovitz = Aphodius brasilicola Balthasar; Aphodius guatemalensis Bates = Aphodius striatipennis Petrovitz; Aphodius kuntzeni Schmidt = Aphodius amplinotum Gordon and Howden = Aphodius michiliensis Deloya; Aphodius bimaculosus Schmidt = Aphodius xalapensis Galante et al.; Aphodius caracanus Balthasar = Aphodius martinsi Petrovitz; Aphodius volxemi Harold = Aphodius squamifer Petrovitz.
New South American taxa of Odontolochini Stebnicka and Howden (Coleoptera: Scarabaeidae: Aphodiinae)
(2007)
Recently discovered Neotropical taxa belonging in the tribe Odontolochini Stebnicka and Howden (Coleoptera: Scarabaeidae: Aphodiinae) are described. New genera are: Amerilochus, type species Amerilochus cinereus, new species; and Stebnickiella, type species Stebnickiella zosterixys, new species. Three additional new species are: Saprolochus lobatus, Saprolochus tridentatus, and Saprositellus kenodontus. Updated keys are presented to the New World genera of Odontolochini as well as keys to species in the genera Saprolochus Stebnicka and Galante and Saprositellus Balthasar. New country records are presented for Saprositellus ariquemes Stebnicka.
The genus name Drepanocanthoides Schmidt has recently been applied to Australian and North American taxa, based on generic concepts following separate designations of different type species. Drepanocanthoides, type species Aphodius walshii Horn, is a Nearctic genus that is not congeneric with the Australian members. The new name Ozodius, n. gen., is here proposed for the Australian taxa, with Aphodius neglectus Schmidt designated as the type species. All Australian members of Drepanocanthoides are transferred to Ozodius.
Three distinct tibial types are recognized within the Rhyparini (Scarabaeidae, Aphodiinae). Based on this, generic limits for the species of Termitodius Wasmann are reevaluated, with the Old World members being transferred to Termitodiellus Nakane. The resulting new combinations are: Termitodiellus besucheti (Paulian), Termitodiellus hammondi (Krikken and Huijbregts), Termitodiellus interruptus (Krikken and Huijbregts), Termitodiellus luzonensis (Howden), Termitodiellus monticola (Krikken and Huijbregts). New World members of Termitodius are split into two genera: Termitodius Wasmann and Aschnarhyparus Makhan. Aschnarhyparus soesilae Makhan is here relegated to a junior synonym of Termitodius peregrinus Hinton, new synonymy, with the resulting new combination being Aschnarhyparus peregrinus (Hinton). A full description of Aschnarhyparus is presented, and Termitodiellus and Termitodius are diagnosed.
This paper documents the trends in the life-cycle profiles of net worth and housing equity between 1983 and 2004. The net worth of older households significantly increased during the housing boom of recent years. However, net worth grew by more than housing equity, in part because other assets also appreciated at the same time. Moreover, the younger elderly offset rising house prices by increasing their housing debt, and used some of the proceeds to invest in other assets. We also consider how much of their housing equity older households can actually tap, using reverse mortgages. This fraction is lower at younger ages, such that young retirees can consume less than half of their housing equity. These results imply that ‘consumable’ net worth is smaller than standard calculations of net worth. JEL Classification: G11, E21
THE DEMAND FOR EFFICIENT MEASURES FOR PREVENTING CONSUMER CREDIT RISKS SUCH AS CREDIT SCORING IS GROWING ACROSS INDUSTRIES. IN GERMANY, SCORECALCULATIONS AND UNDERLYING CONSUMER DATA ARE STILL A WELL-GUARDEDSECRET. THE MARKET LEADER IN THE U.S. NOT ONLY DISCLOSES THE CREDIT SCORING VARIABLES TO THE CUSTOMERS BUT MOREOVER OFFERS THEM ADVICE ON HOW TO QUALIFY FOR BETTER INTEREST RATES.
All living organisms exhibit daily fluctuations in biochemical, physiological and behavioural parameters driven by endogenous oscillators, residing in the organism itself. In mammals, the core circadian oscillator is located in the paired suprachiasmatic nuclei (SCN) of the hypothalamus. Circadian rhythm generation in the SCN depends upon the expression of clock genes interacting in positive and negative transcriptional/translational feedback loops. The SCN governs the timing of peripheral circadian oscillators by neuronal pathways and by neuroendocrine mechanisms. An important neuroendocrine hand of the core circadian oscillator is melatonin, which is produced in and secreted from the pineal gland night by night. The adenohypophysis represents a peripheral circadian oscillator and the secretion of one of its hormones, prolactin, is known to be regulated by melatonin. The aim of the present study was to analyze a putative influence of melatonin on the activity state and diurnal variations of identified cell types in the hypophysis. Particular attention was paid to lactotroph, gonadotroph and pars intermedia cells. Experiments were performed with young male mice of different strains: melatonin-proficient C3H, melatonin-deficient C57BL, melatonin-proficient C3H with targeted deletions of the Mel1a receptor (MelaaBB), Mel1b receptor (MelAAbb) or both receptors (Melaabb). Cells producing prolactin (PRL), follicle stimulating hormone (FSH) were immunocytochemically identified and the presence of phosphorylated CREB protein (pCREB) and clock gene protein PER1 was demonstrated by double immunolabeling at different time points during the light/dark cycle in melatonin deficient, melatonin proficient and melatonin receptor knockout mice. Melatonin influence on Prl mRNA levels was investigated by means of in situ hybridization. At night the percentage of lactotroph cells showing a positive nuclear pCREB- and PER1-immunoreaction is significantly smaller in C57BL than in C3H mice. In both mouse strains, the percentage of pCREB –immunoreactive cells is minimal in the early morning and gradually increases to reach a maximum in the late night. PER1 levels show a parallel temporal variation in C3H, but in C57BL, they are drastically reduced in the early afternoon. The percentage of FSH-immunoreactive cells showing pCREB immunoreaction was significantly lower in the melatonin-deficient C57Bl mice than in the melatonin-proficient C3H mice during the second part of the day and during the night. In each strain, the percentage of FSH-immunoreactive cells was lowest at the early morning and gradually increases until the maximum at late night. In wild type (MelAABB) and MelAAbb mice the percentage of lactotroph cells with nuclear pCREB immunoreactions varied significantly over 24 h period, whereas in MelaaBB and Melaabb mice no significant differences were found between the five time points analyzed. The number of Prl mRNA expressing cells was significantly higher in MelaaBB and MelAAbb than in their wild type (MelAABB) littermates. pCREB levels in the pars intermedia did not show rhythmic variation in wild type or Melaabb animals, but wild type mice had higher pCREB levels than Melaabb. The observation that, during darkness, the percentage of lactotroph cells with nuclear pCREB immunoreaction is significantly higher in C3H than in C57BL mice suggests the existence of a distinct cell population that is under the control of melatonin-dependent intrapituitary signaling. Results with melatonin receptor knockout mice indicate that Mel1a and Mel1b melatonin receptors are involved in the control of the activity state of lactotroph cells, but to a differing degree. Analysis of cells expressing Prl mRNA showed that inhibitory action on the Prl expression is mostly mediated through the Mel1a receptor. The significant difference between pCREB immunoreaction in gonadotroph cells of C3H and C57BL mice might suggest that, like lactotrophes, FSH cells represent a heterogeneous population and only a subpopulation is under control of melatonin signaling. The present study is first to show that melatonin signaling also affects pCREB levels in pars intermedia of mice.
Floristic variation in Sphagnum-dominated peatland communities of the Central Highlands, Victoria
(2007)
The floristic composition of Sphagnum-dominated peatlands in the Central Highlands region of Victoria was surveyed (37º 25´ S; 145º 50´ E). NMDS ordination and cluster analysis divided the peatland sites into two broad groups with altitude being the most important factor separating these groups. Other important factors were aspect, slope and the amount of shade. Group 1 included subalpine sites that are similar to those found at higher altitudes further east in Victoria. Important species included Empodisma minus, Epacris paludosa, Richea continentis and Baeckea gunniana. The two species of Sphagnum present were Sphagnum cristatum and the more inundation-tolerant Sphagnum novozelandicum. Group 2 included montane peatlands with abundant Sphagnum cristatum. These sites range from broad wet heaths dominated by Richea victoriana and Carex appressa, to narrower cool temperate rainforest and riparian systems. The ‘rainforest’ peatlands are characterised by Leptospermum grandifolium, Nothofagus cunninghamii, Carex appressa and Blechnum penna-marina, and are in varying stages of post-fire succession regulated by sitespecific microclimate. The conservation status and catchment function of these peatlands are briefly discussed.
Poster presentation: Light is the main phase-adjusting stimulus of the circadian clock located in the suprachiasmatic nucleus (SCN). A candidate pathway transmitting photic information at the postsynaptic site in the SCN is the extracellular signal-regulated kinase (ERK 1/2) which has been previously shown to be an essential element in the photoentrainment of the circadian rhythm. An upstream activator of the ERK signalling route is the small intracellular GTPase Ras. Here we observed that endogenous Ras activity in the SCN was subjected to rhythmic changes, reaching maximum levels at the late subjective day and minimum levels at the late subjective night (CT22). In order to investigate if Ras would modulate the circadian cycle, we used transgenic mice expressing constitutively activated Val-12 Ha-Ras selectively in neurons (synRas mice). In these mice Ras activity was also cycling during the circadian rhythm yet, Ras activities were up-regulated at each time point measured. We investigated if this change in Ras activity translates into a behavioral phenotype by monitoring free-running activity rhythms under conditions of constant darkness. SynRas mice exhibited circadian rhythms in locomotor activities similar to WT mice. However, when challenged by applying a 15 minutes light pulse at CT22 to promote phase advance shifts, synRas mice were completely non-responsive. As a first step towards the possible intracellular mechanism of this behavioral change we analyzed ERK1/2 activities in more details: We found a 1,7-fold increase of circadian peak levels of ERK 1/2 activities at CT10 and CT14 in synRas mice, while at minimum levels (CT18, CT22) no differences were found between ERK1/2 activities of WT and synRas mice. In WT animals the 15 minutes light pulse at CT22 resulted in rapid up regulations of Ras, ERK1/2 and CREB activities as described previously by others. However, in correlation with the lack of a behavioral response, ERK1/2 but not Ras and CREB activities remained unchanged in synRas mice, suggesting that Ras-dependent and Ras-independent pathways may co-exist to regulate ERK1/2 and behavioral phase shifts in response to the acute light treatment. Next we investigated the length "tau" of the locomotor activity rhythm during constant darkness and found a slight shortening by about 10 minutes in synRas mice as compared to the WT littermates. Recently, "tau" has been discussed to be modulated by the interaction between glycogen synthase 3beta (GSK3beta) and a clock gene product (Per 2) that is involved in the determination of circadian phase durations. We describe here a down-regulation of GSK3beta phosphorylation in synRas mice as a possible mechanism of "tau" shortening. Taken together, cycling of Ras activity at elevated levels in the SCN during the circadian rhythm results in a distinct pattern of behavioral phenotype changes correlating with de-regulated ERK1/2 or GSK3beta activities.
New evidence is provided for a grammatical principle that singles out contrastive focus (Rooth 1996; Truckenbrodt 1995) and distinguishes it from discourse-new “informational” focus. Since the prosody of discourse-given constituents may also be distinguished from discourse-new, a three-way distinction in representation is motivated. It is assumed that an F-feature marks just contrastive focus (Jackendoff 1972, Rooth 1992), and that a G-feature marks discoursegiven constituents (Féry and Samek-Lodovici 2006), while discoursenew is unmarked. A crucial argument for G-marking comes from second occurrence focus (SOF) prosody, which arguably derives from a syntactic representation where SOF is both F-marked and G-marked. This analysis relies on a new G-Marking Condition specifying that a contrastive focus may be G-marked only if the focus semantic value of its scope is discourse-given, i.e. only if the contrast itself is given.
Aims: To analyze the relationship between exposure to chlorinated and aromatic organic solvents and malignant lymphoma in a multi-centre, population-based case-control study.
Methods: Male and female patients with malignant lymphoma (n=710) between 18 and 80 years of age were prospectively recruited in six study regions in Germany (Ludwigshafen /Upper Palatinate, Heidelberg/ Rhine-Neckar-County, Wurzburg/ Lower Frankonia, Hamburg, Bielefeld/ Gutersloh, and Munich). For each newly recruited lymphoma case, a gender, region and age-matched (+/- 1 year of birth) population control was drawn from the population registers. In a structured personal interview, we elicited a complete occupational history, including every occupational period that lasted at least one year. On the basis of job task-specific supplementary questionnaires, a trained occupational physician assessed the exposure to chlorinated hydrocarbons (trichloroethylene, tetrachloroethylene, dichloromethane, carbon tetrachloride) and aromatic hydrocarbons (benzene, toluene, xylene, styrene). Odds ratios (OR) and 95% confidence intervals (CI) were calculated using conditional logistic regression analysis, adjusted for smoking (in pack years) and alcohol consumption. To increase the statistical power, patients with specific lymphoma subentities were additionally compared with the entire control group using unconditional logistic regression analysis.
Results: We observed a statistically significant association between high exposure to chlorinated hydrocarbons and malignant lymphoma (Odds ratio = 2.1; 95% confidence interval 1.1-4.3). In the analysis of lymphoma subentities, a pronounced risk elevation was found for follicular lymphoma and marginal zone lymphoma. When specific substances were considered, the association between trichloroethylene and malignant lymphoma was of borderline statistical significance. Aromatic hydrocarbons were not significantly associated with the lymphoma diagnosis.
Conclusions: In accordance with the literature, this data point to a potential etiologic role of chlorinated hydrocarbons (particularly trichloroethylene) and malignant lymphoma. Chlorinated hydrocarbons might affect specific lymphoma subentities differentially. Our study does not support a strong association between aromatic hydrocarbons (benzene, toluene, xylene, or styrene) and the diagnosis of a malignant lymphoma.
The paper investigates focus marking devices in the scarcely documented North-Ghanaian Gur language Konkomba. The two particles lé and lá occur under specific focus conditions and are therefore regarded as focus markers in the sparse literature. Comparing the distribution and obligatoriness of both alleged focus markers however, I show that one of the particles, lé, is better analyzed as a connective particle, i.e. as a syntactic rather than as a genuine pragmatic marker, and that comparable syntactic focus marking strategies for sentence-initial constituents are also known from related languages.
Poster presentation: The transcription factor NF-kappaB plays a central role in the development and maintenance of the central nervous system and its constitutive activation in neurons has been repeatedly reported. Previous work from our laboratories (poster presentation: Compartimentalized NF-kappaB activity in the axon initial segment) had revealed an intriguing clustering of activated IKKalpha/beta and other downstream elements of an activated NF-kappaB cascade (phospho-IkappaBalpha, phospho-p65(Ser536)) in the axon initial segment (AIS). Accumulation of certain voltage-gated sodium channels (Na(v)1.2), M-type potassium channels (KCNQ2) as well as cytoskeletal anchoring proteins (AnkyrinG) characterise the AIS. However, it is not yet clear how AIS-localized IKK gets activated and whether this can be connected to the constitutive activation of NF-kappaB. Long-term blockade of sodium channels with tetrodotoxin, potassium-channels with linopirdine or NMDA-receptors with MK-801 did not elicit any change upon the constitutive activation of the pathway. Strikingly, the occurrence of phosphorylated IkappaBalpha was even unaltered by 24 h of incubation with protein synthesis inhibitors. Others have reported that impairment of NF-kappaB inhibits neuritogenesis. In this line we observed that the early initiation of IkappaBalpha phosphorylation was susceptible to inhibition of IKK in DIV1–2 neurons. We therefore aim to identify the interaction partners of the activated IKK complex in the AIS. Proteomic methods such as co-immunoprecipitation analyses and mass-spectrometry will help us to identify the key players in the initiation of constitutive IKK phosphorylation and activation in neurons.
Rather than introducing a new system for global identity management, the University of Freiburg decided to continue with the existing software systems (esp. from HIS), to identify the leading system for each set of data and to mirror the data between the various systems. A clearly defined workflow ensures that changes to data are made only on the relevant "leading" system and then propagated to the other systems. User authentication for systems managed by the computer center is done via LDAP. Consequently, while access rights are granted by the LDAP system, the decision of whether or not the person is a member of the University is left to the administration. As a consequence the implementation of a portal called mylogin to get the necessary tickets for shibboleth is a straightforward process as it only remains to check the data against LDAP before issueing the corresponding tickets.
Background Olfactory receptors work at the interface between the chemical world of volatile molecules and the perception of scent in the brain. Their main purpose is to translate chemical space into information that can be processed by neural circuits. Assuming that these receptors have evolved to cope with this task, the analysis of their coding strategy promises to yield valuable insight in how to encode chemical information in an efficient way. Results We mimicked olfactory coding by modeling responses of primary olfactory neurons to small molecules using a large set of physicochemical molecular descriptors and artificial neural networks. We then tested these models by recording in vivo receptor neuron responses to a new set of odorants and successfully predicted the responses of five out of seven receptor neurons. Correlation coefficients ranged from 0.66 to 0.85, demonstrating the applicability of our approach for the analysis of olfactory receptor activation data. The molecular descriptors that are best-suited for response prediction vary for different receptor neurons, implying that each receptor neuron detects a different aspect of chemical space. Finally, we demonstrate that receptor responses themselves can be used as descriptors in a predictive model of neuron activation. Conclusions The chemical meaning of molecular descriptors helps understand structure-response relationships for olfactory receptors and their 'receptive fields'. Moreover, it is possible to predict receptor neuron activation from chemical structure using machine-learning techniques, although this is still complicated by a lack of training data.