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Thirty-one species of mealybugs (Hemiptera: Pseudococcidae) are reported from South Korea based upon monitoring surveys conducted from 2010 to 2016, along with a dichotomous key to separate them. Six species, Nipaecoccus nipae (Maskell), Palmicultor lumpurensis (Takahashi), Planococcus citri (Risso), Pseudococcus dendrobiorum Williams, Pseudococcus longispinus (Targioni-Tozzetti), and Pseudococcus orchidicola Takahashi, known only to occur in greenhouses, are considered as adventive mealybug species to South Korea; of these, P. citri has already established in the exterior environment in South Korea.
New state records for 49 species of Eucnemidae (Coleoptera) are reported throughout the United States and a single species is newly reported from Utah. Diagnostic remarks are offered for Xylophilus crassicornis Muona and distributional observations are discussed for Dirrhagofarsus lewisi. The importance of retaining by-catch from statewide, regional, and national surveys for future studies is also discussed.
A statewide survey of Wisconsin’s Nemonychidae and Anthribidae (Coleoptera: Curculionoidea) was conducted over one full (2012) and two partial (2011, 2013) fi eld seasons. Specimens were collected using a variety of techniques. Two species of the nemonychid genus Cimberis and 22 species of Anthribidae in 13 genera are now confi rmed. Generic and species-level keys for Wisconsin species are provided along with generic and species diagnoses. Species treatments also include a synonymy, a description, and information on natural history, phenology, distribution and collecting methods. Dorsal and lateral habitus images are also provided for most of the species.
Tragosoma soror (Coleoptera: Cerambycidae: Prioninae), a new Nearctic species, is described and compared to its North American congeners. Tragosoma harrisii LeConte, revised status, and Tragosoma spiculum Casey, revised status are both resurrected from synonymy and considered valid species distinct from T. depsarium (Linnaeus). The Mexican T. nigripenne Bates is confi rmed as a valid species. Tragosoma chiricahuae Linsley, new synonym, is placed in synonymy under T. spiculum Casey, and T. sodale Casey, new synonym, T. parvicolle Casey, new synonym, and T. repens Casey new synonym are placed in synonymy under T. harrisii. Tragosoma repens is a junior objective synonym of T. parvicolle. A lectotype is designated for T. sodale. An updated synonymical and distributional checklist of Tragosoma of the world is provided.
We propose a model for measuring the runtime of concurrent programs by the minimal number of evaluation steps. The focus of this paper are improvements, which are program transformations that improve this number in every context, where we distinguish between sequential and parallel improvements, for one or more processors, respectively. We apply the methods to CHF, a model of Concurrent Haskell extended by futures. The language CHF is a typed higher-order functional language with concurrent threads, monadic IO and MVars as synchronizing variables. We show that all deterministic reduction rules and 15 further program transformations are sequential and parallel improvements. We also show that introduction of deterministic parallelism is a parallel improvement, and its inverse a sequential improvement, provided it is applicable. This is a step towards more automated precomputation of concurrent programs during compile time, which is also formally proven to be correctly optimizing.
Der viersemestrige Master-Studiengang Biochemie leitet sich aus der langjährigen Tradition in biomolekularer Forschung und Lehre in der Frankfurter Forschungslandschaft her und ist stark forschungsorientiert.
Ziel des Studienganges ist es, fachliche Kenntnisse, Fähigkeiten und Methodenkompetenzen zu vermitteln, mit denen die Absolventen in die Lage versetzt werden, in einem forschungsbezogenem Kontext selbstständig zu arbeiten.
Inhaltlich erstreckt sich der Studiengang von zellulärer Biochemie über Strukturbiologie bis hin zur Biophysik/Biophysikalischen Chemie und ermöglicht den Studierenden die Setzung individueller Schwerpunkte. Für eine forschungsnahe Ausbildung auf hohem Niveau ist der Studiengang integral mit dem lokalen Forschungsumfeld verknüpft, was neben dem Heimatfachbereich Biochemie / Chemie / Pharmazie auch die Fachbereiche Physik, Biowissenschaften, Medizin als auch außeruniversitäre Institutionen wie das Max-Planck-Institut für Biophysik und das Paul-Ehrlich-Institut involviert. Den besonderen Frankfurter Schwerpunkten Strukturbiologie und Membranproteinforschung wird im Studiengang Rechnung getragen.
Das Masterstudium am hochmodernen Life-Science Campus der Goethe-Universität bietet in einer einzigartigen Mischung aus Theorie und Praxis in Biochemie und Biophysikalischer Chemie das Rüstzeug für eine Karriere in der universitären sowie industriellen Umgebung. Die Beteiligung diverser Forschungsinstitute am Masterprogramm ermöglicht eine Spezialisierung in Immunologie, Tumorbiologie oder in Membranbiochemie. Die starke Vernetzung der Universität in nationale sowie internationale Forschungsverbünde gewährleistet den Studierenden einen engen Kontakt mit international führenden Wissenschaftlern und die Möglichkeit zu weltweiten Forschungsaufenthalten. ...
Catecholaminergic polymorphic ventricular tachycardia (CPVT) is a condition of abnormal heart rhythm (arrhythmia), induced by physical activity or stress. Mutations in ryanodine receptor 2 (RyR2), a Ca2+ release channel located in the sarcoplasmic reticulum (SR), or calsequestrin 2 (CASQ2), a SR Ca2+ binding protein, are linked to CPVT. For specific drug development and to study distinct arrhythmias, simple models are required to implement and analyze such mutations. Here, we introduced CPVT inducing mutations into the pharynx of Caenorhabditis elegans, which we previously established as an optogenetically paced heart model. By electrophysiology and video-microscopy, we characterized mutations in csq-1 (CASQ2 homologue) and unc-68 (RyR2 homologue). csq-1 deletion impaired pharynx function and caused missed pumps during 3.7 Hz pacing. Deletion mutants of unc-68, and in particular the point mutant UNC-68(R4743C), analogous to the established human CPVT mutant RyR2(R4497C), were unable to follow 3.7 Hz pacing, with progressive defects during long stimulus trains. The pharynx either locked in pumping at half the pacing frequency or stopped pumping altogether, possibly due to UNC-68 leakiness and/or malfunctional SR Ca2+ homeostasis. Last, we could reverse this ‘worm arrhythmia’ by the benzothiazepine S107, establishing the nematode pharynx for studying specific CPVT mutations and for drug screening.
Background: Malaria remains one of the most serious infections for travellers to tropical countries. Due to the lack of harmonized guidelines a large variety of treatment regimens is used in Europe to treat severe malaria.
Methods: The European Network for Tropical Medicine and Travel Health (TropNet) conducted an 8-year, multicentre, observational study to analyse epidemiology, treatment practices and outcomes of severe malaria in its member sites across Europe. Physicians at participating TropNet centres were asked to report pseudonymized retrospective data from all patients treated at their centre for microscopically confirmed severe Plasmodium falciparum malaria according to the 2006 WHO criteria.
Results: From 2006 to 2014 a total of 185 patients with severe malaria treated in 12 European countries were included. Three patients died, resulting in a 28-day survival rate of 98.4%. The majority of infections were acquired in West Africa (109/185, 59%). The proportion of patients treated with intravenous artesunate increased from 27% in 2006 to 60% in 2013. Altogether, 56 different combinations of intravenous and oral drugs were used across 28 study centres. The risk of acute renal failure (36 vs 17% p = 0.04) or cerebral malaria (54 vs 20%, p = 0.001) was significantly higher in patients ≥60 years than in younger patients. Respiratory distress with the need for mechanical ventilation was significantly associated with the risk of death in the study population (13 vs 0%, p = 0.001). Post-artemisinin delayed haemolysis was reported in 19/70 (27%) patients treated with intravenous artesunate.
Conclusion: The majority of patients with severe malaria in this study were tourists or migrants acquiring the infection in West Africa. Intravenous artesunate is increasingly used for treatment of severe malaria in many European treatment centres and can be given safely to European patients with severe malaria. Patients treated with intravenous artesunate should be followed up to detect and manage late haemolytic events.
Progressive neurodegenerative diseases plague millions of individuals both in the United States and across the world. The current pathology of progressive neurodegenerative tauopathies, such as Alzheimer’s disease (AD), Pick’s disease, frontotemporal dementia (FTD), and progressive supranuclear palsy, primarily revolves around phosphorylation and hyperphosphorylation of the tau protein. However, more recent evidence suggests acetylation of tau protein at lysine 280 may be a critical step in molecular pathology of these neurodegenerative diseases prior to the tau hyperphosphorylation. Secondary injury cascades such as oxidative stress, endoplasmic reticulum stress, and neuroinflammation contribute to lasting damage within the brain and can be induced by a number of different risk factors. These injury cascades funnel into a common pathway of early tau acetylation, which may serve as the catalyst for progressive degeneration. The post translational modification of tau can result in production of toxic oligomers, contributing to reduced solubility as well as aggregation and formation of neurofibrillary tangles, the hallmark of AD pathology. Chronic Traumatic Encephalopathy (CTE), caused by repetitive brain trauma is also associated with a hyperphosphorylation of tau. We postulated acetylation of tau at lysine 280 in CTE disease could be present prior to the hyperphosphorylation and tested this hypothesis in CTE pathologic specimens. We also tested for ac-tau 280 in early stage Alzheimer’s disease (Braak stage 1). Histopathological examination using the ac tau 280 antibody was performed in three Alzheimer's cases and three CTE patients. Presence of ac-tau 280 was confirmed in all cases at early sites of disease manifestation. These findings suggest that tau acetylation may precede tau phosphorylation and could be the first "triggering" event leading to neuronal loss. To the best of our knowledge, this is the first study to identify acetylation of the tau protein in CTE. Prevention of tau acetylation could possibly serve as a novel target for stopping neurodegeneration before it fully begins. In this study, we highlight what is known about tau acetylation and neurodegeneration.
Online reading behavior can be regarded as a "new" form of cultural capital in today’s digital world. However, it is unclear whether "traditional" mechanisms of cultural and social reproduction are also found in this domain, and whether they manifest uniformly across countries at different stages of development. This article analyzes whether the early home literacy environment has an impact on informational online reading behavior among adolescents and whether this association varies between countries with different levels of digitalization and educational expansion. Data from the 2009 Programme for International Student Assessment (PISA) were used for the empirical analyses. The results of regression models with country-fixed effects indicate a positive association between literacy activities in early childhood and informational online reading at age 15. This association was quite stable across countries. These findings are discussed in light of cultural and social reproduction theory and digital divide research.
The toolbox for imaging molecules is well-equipped today. Some techniques visualize the geometrical structure, others the electron density or electron orbitals. Molecules are many-body systems for which the correlation between the constituents is decisive and the spatial and the momentum distribution of one electron depends on those of the other electrons and the nuclei. Such correlations have escaped direct observation by imaging techniques so far. Here, we implement an imaging scheme which visualizes correlations between electrons by coincident detection of the reaction fragments after high energy photofragmentation. With this technique, we examine the H2 two-electron wave function in which electron–electron correlation beyond the mean-field level is prominent. We visualize the dependence of the wave function on the internuclear distance. High energy photoelectrons are shown to be a powerful tool for molecular imaging. Our study paves the way for future time resolved correlation imaging at FELs and laser based X-ray sources.
The cardiovascular system (CVS) consists of heart and blood vessels, forming a close circulatory loop. All tissues depend on the nutrients and molecular oxygen (O2) delivered by the blood. Therefore, it is not surprising that the CVS is one of the first working systems and the heart is the first functional organ in the forming embryo (Baldwin 1996). The building blocks of blood vessels are endothelial cells (ECs), which form the endothelium, a specialized epithelium that defines the luminal surface of the vessels (Pugsley and Tabrizchi 2000). The process of blood vessel development comprises several steps. The first events occurring are the formation of new vessels de novo to constitute the primary vascular loop known as vasculogenesis. During vasculogenesis the vascular precursors, known as angioblasts, migrate and coalesce to form the axial vessels. Subsequently, the main vessels undergo a specification step where they acquire either arterial or venous identity. As the embryo increases in size, the main vascular loop needs to increase in complexity. In order to reach all the different parts of the developing organs, new blood vessels are formed from pre-existing ones, a phenomenon known as angiogenesis (Gore et al. 2012).
Mature blood cells have a short lifespan. Therefore, hematopoietic stem cells (HSCs) are required throughout lifetime to constantly form new blood cells in a process called hematopoiesis. Interestingly, endothelial and immune cells development have been shown to converge at different points during their development, one of which is developmental hematopoiesis. During embryogenesis, definitive hematopoiesis occurs in a tissue called hemogenic endothelium (HE), a specialized subset of ECs at the ventral wall of the dorsal aorta (DA). HE acquires hematopoietic potentials and gives rise to HSCs, through a process known as endothelial-to-hematopoietic transition (EHT). During EHT, these specialized ECs extrude from DA and colonize the so-called aorta-gonadmesonephros (AGM) region, forming the native HSCs (Paik and Zon 2010).
As vascular development requires different steps, the molecular pathways involved are many. The Notch signaling pathway has been demonstrated to be one of the main players in vascular development. Among other functions, Notch signaling has been shown to be important during EHT. In the murine model, Runx1, a master regulator of HSC formation, has been shown to be transcriptionally regulated by NOTCH1 through GATA2 activation. This observation was later corroborated by knockdown studies for notch1a and notch1b in zebrafish (Butko, Pouget, and Traver 2016). Another essential pathway for vascular development is the HIF pathway. Hif-1α, Hif-1β and Hif-2α mouse mutants show severe vascular defects that result in early embryonic lethality (Simon and Keith 2008), which hinders a deep analysis of the phenotypes incurring in the mutant embryos. In addition, deletion of Hif-1α specifically in myeloid cells showed abnormalities in the motility, invasiveness, and adhesion of macrophages (Cramer et al. 2003). Intriguingly, Hif-1α deletion in vascular endothelial cadherin-expressing cells led to a significant but partial reduction of HSC number, suggesting that other players may be involved in this pathway (Imanirad et al. 2014).
Zebrafish embryos have been shown to be tolerant to hypoxia at very early stages of development (Padilla and Roth 2001). Also, zebrafish embryos develop externally and this allows to finely manipulate the environment where they grow (Lieschke and Currie 2007). These features make zebrafish an ideal model to investigate how hypoxia and Hif transcription factors affect vertebrate vascular development. In this study, I will examine the impact of hypoxia on zebrafish vascular development. Specifically, I will dissect the role of hif-1α in macrophage-EC interactions during vascular development and repair. Moreover, I show redundant functions for hif-1α and hif-2α in HSC development upstream of Notch signaling.
The ALICE High-Level-Trigger (HLT) is a large scale computing farm designed and constructed for the purpose of the realtime reconstruction of particle interactions (events) inside the ALICE detector. The reconstruction of such events is based on the raw data produced in collisions inside the ALICE at the Large Hadron Collider. The online reconstruction in the HLT allows the triggering on certain event topologies and a significant data reduction by applying compression algorithms. Moreover, it enables a real-time verification of the quality of the data.
To receive the raw data from the various sub-detectors of ALICE, the HLT is equipped with 226 custom built FPGA-based PCI-X cards, the H-RORCs. The H-RORC interfaces the detector readout electronics to the nodes of the HLT farm. In addition to the transfer of raw data, 108 H-RORCs host 216 Fast-Cluster-Finder (FCF) processors for the Time-Projection-Chamber (TPC). The TPC is the main tracking detector of ALICE and contributes with up to 16 GB/s to over 90% of the overall data volume. The FCF processor implements the first of two steps in the data reconstruction of the TPC. It calculates the space points and their properties from charge clouds (clusters) created by charged particles traversing the TPCs gas volume. Those space points are not only the base for the tracking algorithm, but also allow for a Huffman-based data compression, which reduces the data volume by a factor of 4 to 6.
The FCF processor is designed to cope with any incoming data rate up to the maximum bandwidth of the incoming optical link (160 MB/s) without creating back-pressure to the detectors readout electronics. A performance comparison with the software implementation of the algorithm shows a speedup factor of about 20 compared with one AMD Opteron 6172 Core @ 2.1 GHz, the CPU type used in the HLT during the LHC Run1 campaign. Comparison with an Intel E5-2690 Core @ 3.0 GHz, the CPU type used by the HLT for the LHC Run2 campaign, results in a speedup factor of 8.5. In total numbers, the 216 FCF processors provide the computing performance of 4255 AMD Opteron cores or 2203 Intel cores of the previously mentioned type. The performance of the reconstruction with respect to the physics analysis is equivalent or better than the official ALICE Offline clusterizer. Therefore, ALICE data taking was switched in 2011 to FCF cluster recording and compression only, discarding the raw data from the TPC. Due to the capability to compress the clusters, the recorded data volume could be increased by a factor of 4 to 6.
For the LHC Run3 campaign, starting in 2020, the FCF builds the foundation of the ALICE data taking and processing strategy. The raw data volume (before processing) of the upgraded TPC will exceed 3 TB/s. As a consequence, online processing of the raw data and compression of the results before it enters the online computing farms is an essential and crucial part of the computing model.
Within the scope of this thesis, the H-RORC card and the FCF processor were developed and built from scratch. It covers the conceptual design, the optimisation and implementation, as well as the verification. It is completed by performance benchmarks and experiences from real data taking.
Secretins form multimeric channels across the outer membrane of Gram-negative bacteria that mediate the import or export of substrates and/or extrusion of type IV pili. The secretin complex of Thermus thermophilus is an oligomer of the 757-residue PilQ protein, essential for DNA uptake and pilus extrusion. Here, we present the cryo-EM structure of this bifunctional complex at a resolution of ~7 Å using a new reconstruction protocol. Thirteen protomers form a large periplasmic domain of six stacked rings and a secretin domain in the outer membrane. A homology model of the PilQ protein was fitted into the cryo-EM map. A crown-like structure outside the outer membrane capping the secretin was found not to be part of PilQ. Mutations in the secretin domain disrupted the crown and abolished DNA uptake, suggesting a central role of the crown in natural transformation.
Studentische Lehrevaluationsergebnisse sind ein weit verbreitetes Maß, um die Qualität universitärer Lehre zu erfassen. Diese Ergebnisse werden unter anderem dafür genutzt, Entscheidungen für die Modifikation des Lehrangebots zu treffen oder die Vergabe der Leistungsorientieren Mittelvergabe mitzubestimmen. Aufgrund dieser relevanten Folgen wird in dieser Arbeit der Frage nachgegangen, wie ein angemessener Validierungsprozess bezüglich studentischer Lehrevaluationsergebnisse gestaltet werden könnte.
Bisherige Validierungsstudien zu studentischen Lehrevaluationsinventaren fokussierten sich meist auf die Überprüfung verschiedener Validitätsarten (inhaltsbezogene, kriteriumsbezogene oder faktorielle) und die Erfassung der Messfehlerfreiheit.
Allerdings ist zum einen zu hinterfragen, ob diese Ansätze grundsätzlich für alle Inventare geeignet sind. Weiterhin hat sich das Verständnis von dem verändert, was unter Validität verstanden wird: Von der Annahme von Validität als Testeigenschaft, verschiedener Validitätsarten und binärer Aussagen auf Basis von Einzelbefunden hin zu dem Verständnis von Validität bezogen auf die Testwert-Interpretation und Verwendung, zu einem einheitlichen Validitätskonzept und zu einer Validitäts-Argumentation. Diese Veränderungen werden in den neueren argumentationsbasierten Validitätsansätzen berücksichtigt und bieten einen Rahmen, der auf die jeweilige Intention ausgerichtet ist, einen Test oder Fragebogen einzusetzen.
Auf Grundlage dieser argumentationsbasierten Ansätze wird in dieser Arbeit die Interpretation studentischer Lehrevaluationsergebnisse überprüft, die als das Ausmaß an qualitätsbezogener Zufriedenheit der Teilnehmer mit der Durchführung einer Lehrveranstaltung und der Vermittlung von Lehrinhalten angesehen werden. Der Validierungsprozess wird anhand der Lehrevaluationsdaten des Frankfurter Promotionskollegs am Fachbereich Medizin dargestellt. Dieser Prozess bestätigte weitgehend die beabsichtigte Interpretation, zeigte aber auch eine zumindest teilweise Revision des Inventars und eine weitere Überprüfung an. Eine Validierung bezüglich der Verwendung der Lehrevaluationsergebnisse sowie der auf diesen basierenden beabsichtigten Konsequenzen wird in einer Folgestudie überprüft.
Anhand dieser Arbeit wird Anwendern und Entwicklern von Lehrevaluationsinventaren eine Her- und Anleitung für den Validierungsprozess gegeben und die Vorteile argumentationsbasierter Ansätze aufgezeigt.
Einleitung: Die Intention dieser Arbeit war es zu evaluieren, ob das Prüfungsformat eines OSPE (Objective Structured Practical Examination), durchgeführt im Fach Zahnerhaltungskunde (6. Fachsemester), Aussagen über den Studienerfolg im praktischen Teil des Staatsexamens (11. Fachsemester) im selben Fach zu treffen erlaubt. Ferner sollte unter Berücksichtigung allgemeiner Angaben der StudienteilnehmerInnen (Abitursnote, Physikumsnote, Studiendauer, Kohorte und Geschlecht) analysiert werden, ob bezüglich der Gesamt- sowie Teilnoten des OSPE und der Staatsexamensprüfung im Fach Zahnerhaltungskunde Zusammenhänge oder Unterschiede bestehen.
Methoden: Im Rahmen dieser longitudinalen, retrospektiven Studie wurden über einen Zeitraum von 11 Semestern prüfungsbezogene Daten von Studierenden (N = 223) des Fachbereichs Zahnmedizin in Frankfurt am Main erhoben und untersucht. Ferner wurden persönliche Angaben der Studienteilnehmer zu Alter, Geschlecht, Abitursnote, Physikumsnote und Studiendauer evaluiert sowie eine Zuordnung zu Kohorten vorgenommen. Für die statistische Auswertung der Daten wurden Spearman Rangkorrelationen, Partialkorrelationen, Korrelationskoeffizienten nach Pearson, und Multiple Regressionen (SPSS Statistics 21, IBM Corporation, New York) berechnet.
Ergebnisse: Die Ergebnisse zeigen, dass die Durchführung einer OSPE (Cronbachs α = .87) mit dem Erfolg im praktischen Teil des Staatsexamens im Fach Zahnerhaltungskunde korreliert (p = .01, r = .17). Als eine weitere signifikante Korrelation mit der Examensleistung erwies sich die Dauer des Studiums (p = .001, r = .23). Gemeinsam vermögen diese beiden Variablen einen signifikanten Beitrag zur Vorhersage der Examensnote (p = .001, R2 = .076) zu leisten. Das zeigte sich im größeren Umfang bei weiblichen Studierenden. Zudem wurde festgestellt, dass diese bessere Abitursnoten als männliche Studierende aufweisen (F = 6.09, p = .01, η² = .027) und dass es nur bei männlichen Studierenden eine signifikante Korrelation zwischen der Physikumsnote (Zahnärztliche Vorprüfung) und der OSPE-Benotung gab (r = .17, p = .01).
Schlussfolgerung: In der vorliegenden Untersuchung konnte der prädiktive Effekt eines durchgeführten klinischen OSPE auf die Prüfungsleistung im Staatsexamen nachgewiesen werden. Unter Berücksichtigung der Limitation der Studie empfiehlt sich aus unserer Sicht die Durchführung eines solchen Prüfungsformats im Rahmen des klinischen Studienabschnitts im 6. Semester im Fach Zahnmedizin.
Deciphering the ecological functions of fungal root endophytes based on their natural occurrence
(2017)
Plants are colonized by a large diversity of fungi, some residing on the surface and others penetrating the plant tissues, the latter referred to as fungal endophytes (endon Gr., within; phyton, plant; de Bary 1879). Despite the saprotrophic potential of fungal endophytes, they are not found to cause visible disease symptoms to the host. Plants are colonized simultaneously by various fungal species, which form rich and diverse endophytic assemblages. Although it is hypothesized that fungal endophytes contribute to the fitness of their hosts and to the functioning of ecosystems, the ecological function of fungal endophytic assemblages remains cryptic. The aims of this doctoral thesis are to gain insight to the ecological functions of root fungal endophytes, by deciphering their roles in ecosystems based on their natural occurrence and the structure of their assemblages. The thesis focuses on studying the diversity and structure of the endophytic mycobiome within roots of two annual and widespread plant hosts Microthlapsi perfoliatum and M. erraticum (Brassicaceae) in several locations across northern Mediterranean and central Europe. The thesis is composed by six Chapters, with a primary focus on Chapter 1, 2 and 3.
Chapter 1 (Glynou et al., 2016) aimed at characterizing the diversity of fungal endophytes in roots at a continental scale and at assessing the factors affecting the structure of endophytic assemblages with the use of cultivation-based methods. For that, root samples were collected from 52 plant populations, along with a collection of soil, bioclimatic, geographic and host data. Cultivation of surface-sterilized root samples on culture media and isolation of fungal colonies in pure culture generated 1,998 fungal colonies. Grouping of sequences into Operational Taxonomic Units (OTUs), based on the 97% similarity of the isolates’ rDNA Internal Transcribed Spacer (ITS) sequence, generated in total 296 OTUs, representing taxa mostly within the phylum Ascomycota with a minor representation of Basidiomycota. Endophytic assemblages were mostly correlated with variation in bioclimatic conditions. Interestingly, despite the large diversity revealed, the assemblages were dominated by only six OTUs related to the orders Hypocreales, Pleosporales and Helotiales, which had a widespread distribution across populations but with some following patterns of ecological preferences.
Chapter 2 aimed at characterizing the uncultivable fraction of the root fungal endophytic diversity, which was not possible to capture in Chapter 1. High-throughput sequencing via the
Illumina Miseq platform was implemented in 43 of the 52 original populations and mostly in the same root samples. In comparison with the cultivation-based approach, the HTS managed to cover the overall diversity within samples. It revealed a large non-cultivated endophytic diversity but the same cultivable fungi dominated assemblages. Moreover, the endophytic diversity was grouped mostly within fungal orders with demonstrated ability to grow in culture and taxonomically related groups were found to have divergent ecological preferences.
The genetic identity of the most abundant OTUs was further investigated in Chapter 3 (Glynou et al., 2017), aiming to unravel genotypic variability, which was possibly overlooked due to the use of lTS, as a universal genetic marker, and could explain their high abundance and widespread distribution. Multi-locus gene sequencing and AFLP profiling for the five most abundant OTUs suggested a low within-OTU genetic variability and show that these fungi have ubiquitous distribution and are not limited by environmental conditions within the ecological ranges of the study. A selection of endophytes frequently isolated in Chapter 1 was functionally characterized in Chapter 4 (Kia et al., 2017) based on the isolates’ traits and interactions with plants. In Chapter 5 (Cheikh-Ali et al., 2015) fungal cultures of Exophiala sp. with differential colony structure where investigated for their production of secondary metabolites. Moreover, Chapter 6 (Maciá-Vicente et al., 2016) comprises the description of the new species Exophiala radicis based on morphological and molecular characteristics.
Compilation of all results shows that the fungal endophytic diversity in roots of Microthlaspi spp. is high but few widespread OTUs dominate the assemblages, and have unlimited dispersal ability. These fungi seem also to have a wide niche breadth and are not affected by environmental filtering. The findings indicate that the local environment but also processes of competitive exclusion determine the structure of endophytic assemblages. In addition, the fungal endophytes associated with Microthlapsi spp. likely have saprotrophic activity however the interactions with plants are likely context-dependent. Further research is needed to assess the biotic interactions among endophytes and their effect on the structure of fungal endophytic assemblages. Ultimately, the findings of this thesis are useful to shed light on the processes underlying the structure of endophytic assemblages. They also upraise the need to describe diversity by combining genetic, metabolic and physiological data, in order to disentangle the elusive ecological roles of the endophytic mycobiome.
Patients who undergo endovascular repair of aortic aneurysms (EVAR) require life-long surveillance because complications including, in particular, endoleaks, aneurysm rupture, and graft dislocation are diagnosed in a certain share of the patient population and may occur at any time after the original procedure. Radiation exposure in patients undergoing EVAR and post-EVAR surveillance has been investigated by previous authors. Arriving at realistic exposure data is essential because radiation doses resulting from CT were shown to be not irrelevant. Efforts directed at identification of factors impacting the level of radiation exposure in both the course of the EVAR procedure and post-EVAR endovascular interventions and CTAs are warranted as potentially modifiable factors may offer opportunities to reduce the radiation. In the light of the risks found to be associated with radiation exposure and considering the findings above, those involved in EVAR and post-EVAR surveillance should aim at optimal dose management.
We have determined the crystal structures of two decachlorocyclopentasilanes, namely bis(tetra-n-butylammonium) dichloride decachlorocyclopentasilane dichloromethane disolvate, 2C16H36N+·2Cl−·Si5Cl10·2CH2Cl2, (I), and bis(tetraethylammonium) dichloride decachlorocyclopentasilane dichloromethane disolvate, 2C8H20N+·2Cl−·Si5Cl10·2CH2Cl2, (II), both of which crystallize with discrete cations, anions, and solvent molecules. In (I), the complete decachlorocyclopentasilane ring is generated by a crystallographic twofold rotation axis. In (II), one cation is located on a general position and the other two are disordered about centres of inversion. These are the first structures featuring the structural motif of a five-membered cyclopentasilane ring coordinated from both sides by a chloride ion. The extended structures of (I) and (II) feature numerous C—H⋯Cl interactions. In (II), the N atoms are located on centres of inversion and as a result, the ethylene chains are disordered over equally occupied orientations.
Status and restoration potential of heathlands and sand grasslands in the southwest of Luxembourg
(2017)
In Europe, semi-natural nutrient-poor ecosystems such as sand grasslands and heathlands have shown extreme declines in surface area and species richness within the last century. The remaining sites are hence of high conservation value. This study analysed the vascular plant species inventory of established and recently restored heathlands and sand grasslands in the southwest of Luxembourg. Analyses to explain differences in vegetation composition between “old” (remnant sites or sites restored a long time ago) and “new” (recently restored) sites in relation to environmental variables were carried out with DCAs and ANOVA/Mann-Whitney-U tests, respectively. The vegetation of old heathlands had few character species of typical heathland communities (Calluno-Ulicetea, Nardetalia), whereas new heathland sites were preponderantly marked by taxa of meso- or eutrophic grasslands and ruderal communities. New heathland sites mainly differed from old sites by higher soil phosphorus contents. Sand grassland vegetation was species-rich and composed by species of the Sedo-Scleranthetea and Festuco-Brometea. With increasing age of the sites, vegetation composition shifted to grass dominance with species of the Molinio-Arrhenateretea. New sand grasslands differed from old sand grasslands by higher soil pH, higher soil potassium content and lower graminoid cover. The differences between new and old sites of both habitat types could mainly be explained by successional processes or were a result of topsoil removal. In some cases, former anthropogenic impact at or in close proximity of restored sites resulted in unsuitable conditions, such as alkaline soil on former landfill sites or highly eutrophic soil due to intensive agriculture. Future management options for the study sites are discussed.