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Background: Patients with epilepsy often require a specialized treatment, which may differ because of the responsibility of the federal states for healthcare policy in Germany.
Objective: State-specific differences in healthcare structures based on inpatient hospital cases of epilepsy patients between 2000 and 2020 in relation to specialized treatment offers.
Material and methods: The inpatient hospital cases of the German federal states were evaluated using the Friedman test and time series trend analysis. A state-specific inpatient undertreatment or overtreatment of inpatient hospital cases outside the registered state was analyzed by comparing residence-related and treatment site-related case numbers with a threshold of ±5%.
Results: After age adjustment, significantly more inpatient cases were found in the “new states” compared to the “old states” (p < 0.001); the highest number of cases nationwide was found in Saarland with 224.8 ± 11.5 cases per 100,000 inhabitants. The trend analysis showed an increase in cases until the end of 2016 with a trend reversal from 2017 and a further significant decrease in hospital cases in the COVID year 2020. A relative inpatient undertreatment was shown for Brandenburg, Lower Saxony, Rhineland-Palatinate, Saxony-Anhalt, Schleswig-Holstein and Thuringia. Additional, possibly compensatory, inpatient care was found for all city states (Hamburg, Bremen and Berlin) and Baden-Wuerttemberg. In federal states with a relative inpatient undertreatment and/or high inpatient hospital case numbers, there was often a lower availability of specialized epilepsy centers, specialized outpatient clinics and epilepsy outpatient clinics.
Conclusion: In Germany there are state-specific differences in the structure of care, with higher inpatient hospital care in the “new states” and Saarland. In addition, there were federal states with disproportionately higher treatment of patients not registered in this federal state. A potential influencing factor may be the availability of centers with specialized treatment for epilepsy patients.
Identification of new natural products from nematode-associated bacteria using mass spectrometry
(2023)
This work aims to find unknown natural products produced by bacteria, that live in close association with nematodes and to elucidate their structure by using mass spectrometry.
The first chapter of this work is dedicated to the detection of hitherto unknown natural products by using a metabolomics approach and subsequent structure elucidation of said compounds. This chapter includes metabolomics analysis of Xenorhabdus szentirmaii wild type and knockout mutants, overproduction of the target compound, identification of derivatives from other strains and MS based structure elucidation.
The second and third chapters are about natural products that protect C. elegans from B. thuringiensis infections.
The second chapter deals with natural products that protect the nematode host without killing the pathogen. I deployed molecular biology methods to generate deletion and overproduction strains of a target compound, identified it via LC-MS/MS analysis and used LC-MS/MS and lipidomics to analyse the chemical properties of the active compound.
The third chapter aims at finding natural products, which are produced by Pseudomonas strains MYb11 and MYb12, respectively. These natural products display the ability to protect C. elegans by killing B. thuringiensis. I identified said compounds via fractionation and subsequent bioactivity testing. After identification, I generated production strains of the target compounds and elucidated the structure of the bioactive derivative.
The last chapter deals with the structure elucidation of peptides produced by an unusual GameXPeptide synthetase in Xenorhabdus miraniensis. I analysed producer strains of GameXPeptides using LC-MS and elucidated the structural differences between the known GameXPeptides, produced by P. luminescens TT01, and the unusual ones produced by X. miraniensis.
In search for an ecological concept defining a "whole complex of organisms inhabiting a given region" with more methodological value than 'complex organism' or 'biome' and 'biotic community', the British phytocenologist Arthur Tansley introduced the term 'ecosystem' in 1935. [...] Independently of each other, other scientists from different countries also recognized the interconnectedness of all phenomena on the Earth's surface, resulting in the parallel coining of various notions. The Russian Botanist Vladmir Sukachev (1880–1967) introduced the term 'biogeotsenoz' ('biogeocoenosis' or 'biogeocoenose'), which was broadly used in the Soviet Union and throughout Eastern Europe. It was introduced into Russian in two stages: Following the forestologist Georgii Morozov (1867–1920), who systematically implemented Karl Möbius's term 'biocoenosis', Sukachev first suggested the term 'geotsenoz' ('geocoenosis') in 1942. It was meant to link the earth's surface with its inhabitants and abiotic environmental factors in a dynamic unit. However, in 1944, he changed geocoenosis into biogeocoenosis (BGC), implementing an integral connection with Vladimir Vernadsky's (1863–1945) concepts of the biosphere and the biogeochemical cycles. According to Sukachev, BGC came close to Tansley's notion of the ecosystem which also brings together a biocoenosis with its habitat (the ecotope). However, both terms were not used synonymously: as a more general term, ecosystem was not precise enough to classify the unit of nature itself, whereas the BGC, in accordance with Vernadsky's concept of 'living matter', did not include all abiogenic abiotic factors of the ecosystem. Also, the notions of 'facies' and 'landshaft', which were used by physical geographers, were discussed as similar conceptualization.
The Soviet Union is remembered as a lab for socioeconomic changes on larges scales and environmental catastrophes: the Chernobyl disaster, the Aral Sea tragedy, and ecocide. However, little is known about the groundbreaking concepts and theories of Russian and early Soviet science which laid the foundation for systemic ecological thinking, environmental consciousness for nature conservation, and corresponding initiatives of the revolutionary years after 1917. The isolation of Eastern Europe that came as a result of Stalinism and the Cold War led to Soviet science developing its own scientific approaches and terminology during the 20th century. This does not only include ideological constructions and practices such as the pseudo-scientific Lysenkoism which outlawed genetics and led to disastrous effects on agriculture, the people, and the scientific community. Soviet science has also managed to continue and unfold the new concepts and interdisciplinary dynamics of the ecological turn on the threshold of the 20th century, a development which, at that time, was only sporadically noted in the West. In the context of its thematic focus on Eastern European ecological terminology, this issue discusses a selection of these concepts.
Die vorliegende Dissertation mit dem Titel “Structural dynamics of eukaryotic H/ACA RNPs from Saccharomyces cerevisiae & Structural dynamics of the Guanidine-II riboswitch from Escherichia coli” besteht aus zwei Projekten. Das erste Projekt befasst sich mit den eukaryotischen H/ACA Ribonukleoproteinen (RNP) aus der Hefe. Diese können sequenzspezifisch in der RNA ein Uridin Nukleotid in das Rotationsisomer Pseudouridin (Ψ) umwandeln. Die H/ACA RNPs bestehen aus einer Leit-RNA und vier Proteinen, der katalytisch aktiven Pseudouridylase Cbf5, Nhp2, Gar1 und Nop10. Die Leit-RNA besteht in Eukaryoten konserviert aus zwei Haarnadelstrukturen, die von einem H-Box oder ACA-Box Sequenzmotiv gefolgt sind. In jeder dieser Haarnadeln befindet sich ein ungepaarter Bereich, die sogenannte Pseudouridylierungstasche, wo durch komplementäre Basenpaarung die Ziel-RNA gebunden wird. Fehlerhafte H/ACA RNPs können beim Menschen zu schweren Krankheiten wie verschiedenen Krebsarten oder dem Knochenmarksversagen Dyskeratosis congenita führen, aber sie bieten auch Möglichkeiten zum Einsatz als Therapiemethode. In dieser Arbeit wurde hauptsächlich der zweiteilige Aufbau der H/ACA RNPs untersucht.
Dafür wurden zunächst die einzelnen Komponenten hergestellt werden. Cbf5, Nop10 und Gar1 wurden zusammen heterolog in E. coli exprimiert und gereinigt. Außerdem wurden mehrere Deletionsvarianten von Gar1 hergestellt. Zusätzlich wurde die Leit-RNA unmarkiert über T7 Transkription synthetisiert, sowie sechs verschiedene FRET-Konstrukte mit verschiedenen Markierungschemas der Fluorophore Cy3 und Cy5 über DNA-geschiente Ligation. Anschließend wurde über Größenausschlusschromatographie und radioaktiven Aktivitätsassays geprüft, dass sich die aktiven H/ACA RNPs in vitro aus den einzelnen Komponenten rekonstituieren lassen.
In smFRET Experimenten wurden einzelne Haarnadelstrukturen mit dem zweiteiligen Komplexen verglichen. Dabei konnte gezeigt werden, dass die H3 Haarnadel durch die Anwesenheit von H5 dynamischer und heterogener wurde, während H5 überwiegend unbeeinflusst war. Außerdem konnte die dreidimensionale Orientierung der Haarnadelstrukturen in verschiedenen Assemblierungsschritten mittels smFRET untersucht werden. Hier deutete sich an, dass in Abwesenheit von Proteinen beide Haarnadeln eher entgegengesetzt stehen als in einer parallelen Konformation. Cbf5 scheint den Linker zwischen den Beiden auszustrecken bzw. zu orientieren und die Haarnadelstrukturen etwas gegeneinander zu neigen. Ein Zusammenspiel von Nhp2 und Gar1 war nötig um die oberen Bereiche der Haarnadeln zusammenzuziehen. Es konnte auch ein Modell für den vollen H/ACA RNP vorgeschlagen werden. Im kompletten Komplex könnte das Zusammenziehen der Haarnadelstrukturen durch Nhp2 und Gar1 mit dem Effekt von Cbf5 konkurrieren und könnte hauptsächlich den oberen Bereich von H3 betreffen. Zum Schluss wurde das Zusammenspiel von Gar1 und Nhp2 auf eine Abhängigkeit von den RGG Domänen von Gar1 hin untersucht. Hier besteht möglicherweise eine Hierarchie, die eine Kooperativität von den N- und C-terminalen Domänen benötigt.
Das zweite Projekt befasst sich mit dem Guanidin-II Riboschalter aus E. coli. Der Riboschalter kann das toxische Molekül Guanidinium (Gdm+) spezifisch in seiner Aptamerdomäne binden und dadurch die Genexpression von Proteinen zur Detoxifizierung von Gdm+ aktivieren. Der Riboschalter besteht aus zwei Haarnadelstrukturen, mit einer Schleife, die aus der Sequenz ACGR besteht, wobei R ein Purin ist. In einem vorgeschlagenen Modell soll die Ribosomenbindestelle (Shine-Dalgarno Sequenz) in Abwesenheit von Ligand mit dem Linker komplementär Basenpaaren und so die Translation verhindern. Mit Ligand würde sich dann eine Schleifen-Schleifen Interaktion mit den beiden CG Basen ausbilden, wodurch die Anti-Shine-Dalgarno Sequenz nicht mehr zugänglich wäre. Bisherige Studien arbeiteten zumeist nur mit der Aptamerdomäne, den einzelnen Haarnadeln oder noch kleineren Elementen. In dieser Arbeit wurden die Strukturdynamiken von verschiedenen Längen, auch mit der Expressionsplatform, untersucht. Außerdem wurden verschiedene Mutationen analysiert und die Effekte auf den Riboschalter in seiner natürlichen Umgebung in E. coli.
Zunächst mussten insgesamt 24 FRET-Konstrukte hergestellt werden, die sich in Länge, Markierungsschema und Mutationen unterschieden. Hierfür wurde DNA-geschiente Ligation verwendet. Dank der verschiedenen Fluorophorpositionen konnte ein konformationelles Modell für die Aptamerdomäne vorgeschlagen werden. In diesem Modell könnte in Abwesenheit von Ionen das Aptamer offen vorliegen. Durch Mg2+ würde sich bereits eine lockere Schleifen-Schleifen Interaktion ausbilden. Zusätzlich deuten die Ergebnisse auf eine neue Konformation hin, der stabilisierten Schleifen-Schleifen Interaktion, bei der der Linker zusätzlich mit den Haarnadelstrukturen interagiert, beispielswese mit den Purinen an der vierten Schleifenposition...
The bromodomain and PHD-finger containing transcription factor (BPTF) is part of the nucleosome remodeling factor (NURF) complex and has been implicated in multiple cancer types. Here, we report the discovery of a potent and selective chemical probe targeting the bromodomain of BPTF with an attractive pharmacokinetic profile enabling cellular and in vivo experiments in mice. Microarray-based transcriptomics in presence of the probe in two lung cancer cell lines revealed only minor effects on the transcriptome. Profiling against a panel of cancer cell lines revealed that the antiproliferative effect does not correlate with BPTF dependency score in depletion screens. Both observations and the multi-domain architecture of BPTF suggest that depleting the protein by proteolysis targeting chimeras (PROTACs) could be a promising strategy to target cancer cell proliferation. We envision that the presented chemical probe and the related negative control will enable the research community to further explore scientific hypotheses with respect to BPTF bromodomain inhibition.
Introduction: The rational development of new therapeutics requires a thorough understanding of how aberrant signalling affects cellular homeostasis and causes human disease. Chemical probes are tool compounds with well-defined mechanism-of-action enabling modulation of, for example, domain-specific protein properties in a temporal manner, thereby complementing other target validation methods such as genetic gain- and loss-of-function approaches.
Areas covered: In this review, the authors summarize recent advances in chemical probe development for emerging target classes such as solute carriers and ubiquitin-related targets and highlight open resources to inform and facilitate chemical probe discovery as well as tool compound selection for target validation and phenotypic screening.
Expert opinion: Chemical probes are powerful tools for drug discovery that have led to fundamental insights into biological processes and have paved the way for the development of first-in-class drugs. Open resources can inform on various aspects of chemical probe development and provide access to data and recommendations on use of chemical probes to catalyse collaborative science and help accelerate drug target identification and validation.
Evading imminent predator threat is critical for survival. Effective defensive strategies can vary, even between closely related species. However, the neural basis of such species-specific behaviours is still poorly understood. Here we find that two sister species of deer mice (genus Peromyscus) show different responses to the same looming stimulus: P. maniculatus, which occupy densely vegetated habitats, predominantly dart to escape, while the open field specialist, P. polionotus, pause their movement. This difference arises from species-specific escape thresholds, is largely context-independent, and can be triggered by both visual and auditory threat stimuli. Using immunohistochemistry and electrophysiological recordings, we find that although visual threat activates the superior colliculus in both species, the role of the dorsal periaqueductal gray (dPAG) in driving behaviour differs. While dPAG activity scales with running speed and involves both excitatory and inhibitory neurons in P. maniculatus, the dPAG is largely silent in P. polionotus, even when darting is triggered. Moreover, optogenetic activation of excitatory dPAG neurons reliably elicits darting behaviour in P. maniculatus but not P. polionotus. Together, we trace the evolution of species-specific escape thresholds to a central circuit node, downstream of peripheral sensory neurons, localizing an ecologically relevant behavioural difference to a specific region of the complex mammalian brain.
Caspase-2 is the evolutionary most conserved member of the caspase family and was shown to be involved in genotoxic stress induced apoptosis, control of aneuploidy, and ageing related metabolic changes. However, its role in apoptosis seems redundant due to the observation, that knockout does not inhibit apoptotic signalling exclusively. Instead, knockout of caspase-2 leads to tumor susceptibility in vivo, which led to the assumption, that caspase-2 has non-apoptotic functions and can act as a tumor suppressor. The underlying mechanism of the tumor suppressor activity of caspase-2 has not been clarified so far. Furthermore, caspase-2, has a prominent, and as pro-enzyme exclusive localisation in the nucleus and other subcellular compartments, implicating a distinct and location specific role.
In this study, a novel caspase-2 specific substrate, termed p54nrb, was identified. P54nrb is harbouring a caspase-2 specific cleavage site at the aspartate residue D422, and cleavage of p54nrb leads apparently to disruption of its putative DNA binding domain at the C-terminus.
P54nrb is a nuclear multifunctional RNA and DNA binding protein, known for roles in transcriptional regulation, DNA unwinding and repair, RNA splicing, and retention of defective RNA. Overexpression of p54nrb has been observed in several human cancers, such as cervix carcinoma, melanoma, and colon carcinoma.
Data from this study revealed, that depletion of p54nrb in tumor cell lines results in a loss of resistance to drug induced cell death and to reduced capability of anchorage independent growth, which is functionally equivalent to a reduced tumorigenic potential. Meanwhile, p54nrb depletion alone is not cytotoxic.
The investigation of p54nrb dependent gene regulations by high resolution quantitative proteomics uncovered an altering expression of multiple tumorigenic genes. For two of these candidates, the tumorigenic protease cathepsin-Z and the anti-apoptotic gelsolin, p54nrb dependent expression was detected universally in all three investigated tumor cell lines, cervix carcinoma, melanoma, and colon carcinoma. Additionally, a direct interaction of p54nrb with the cathepsin Z and gelsolin encoding DNA, but not with their corresponding mRNA, could be demonstrated.
Conjointly, this study unveils a novel mechanistic feature of caspase-2 as a tumor suppressor. The caspase-2—p54nrb axis can orchestrate the levels of several tumorigenic proteins and thereby determine the cell death susceptibility and long-term tumor survival. These findings might be of great value for future therapeutic interventions and for overcoming drug resistance of tumors.
Selective attention implements preferential routing of attended stimuli, likely through increasing the influence of the respective synaptic inputs on higher-area neurons. As the inputs of competing stimuli converge onto postsynaptic neurons, presynaptic circuits might offer the best target for attentional top-down influences. If those influences enabled presynaptic circuits to selectively entrain postsynaptic neurons, this might explain selective routing. Indeed, when two visual stimuli induce two gamma rhythms in V1, only the gamma induced by the attended stimulus entrains gamma in V4. Here, we modeled induced responses with a Dynamic Causal Model for Cross-Spectral Densities and found that selective entrainment can be explained by attentional modulation of intrinsic V1 connections. Specifically, local inhibition was decreased in the granular input layer and increased in the supragranular output layer of the V1 circuit that processed the attended stimulus. Thus, presynaptic attentional influences and ensuing entrainment were sufficient to mediate selective routing.
This article follows the conceptual history of regulation in the Russian and Soviet context from the late 19th to mid-20th century and emphasizes its ecological dimension. Considering that regulation is a fundamentally interdisciplinary concept applied in biology, economics, law, or political science, such a history cannot strictly limit itself to the conceptual use of regulation in ecological theory. Here, ecology is rather generally understood as a scientific knowledge of nature that is being formed in various sciences throughout the 19th and 20th century by reintegrating knowledge generated in such different disciplines as natural history, biology, medicine, physics, or physiology. This paper exemplarily traces the constitutional process of ecology as a science with regard to the concept of regulation by acknowledging the transdisciplinary and sometimes metaphorical use of the concept and its oscillation between the organic and the social, the natural and the artificial, the mechanic and the dynamic, the intrinsic and the extrinsic.
Ribosomes translate the genetic code into proteins. Recent technical advances have facilitated in situ structural analyses of ribosome functional states inside eukaryotic cells and the minimal bacterium Mycoplasma. However, such analyses of Gram-negative bacteria are lacking, despite their ribosomes being major antimicrobial drug targets. Here we compare two E. coli strains, a lab E. coli K-12 and human gut isolate E. coli ED1a, for which tetracycline exhibits bacteriostatic and bactericidal action, respectively. The in situ ribosome structures upon tetracycline treatment show a virtually identical drug binding-site in both strains, yet the distribution of ribosomal complexes clearly differs. While K-12 retains ribosomes in a translation competent state, tRNAs are lost in the vast majority of ED1a ribosomes. A differential response is also reflected in proteome-wide abundance and thermal stability assessment. Our study underlines the need to include molecular analyses and to consider gut bacteria when addressing antibiotic mode of action.
Investigation of the kinematics involved in compton scattering and hard X-ray photoabsorption
(2023)
The present work investigates the kinematics of Compton scattering at gaseous, internally-cool helium and molecular nitrogen targets in the high- and the low-energy regime. Additionally, photoionization at molecular nitrogen with high-energy photons is investigated. These exeprimental regimes were previously inaccessible due to the extremely small cross sections involved. Nowadays, the third- and fourth-generation synchrotron machines produce sufficient photon flux, enabling the investiagtion of the above processes. The utilized cold-target recoil-ion momentum spectroscopy (COLTRIMS) technique further increases the detection efficiency of the observed processes, since it enables full-solid-angle detection by exploiting momentum conservation.
Compton scattering is investigated at both high (helium and N2) and low (helium) photon energies. In the high-energy regime, the impulse approximation is mostly valid, which is not the case for the low-energy regime. The impulse approximation assumes that the Compton-scattering process takes place at a free electron with a momentum distribution as if it was bound, thus ignoring the binding energy of the system. In the low-energy regime, the impulse approximation is not valid.
Photoionization is investigated at high photon energies, where the linear momentum of the photon cannot be neglected, as is the fashion of the commonly used dipole approximation.
N6-methyladenosine (m6A) is the most abundant and well understood modification in eukaryotic mRNA and was first identified in polyadenylated parts of the mRNA.The distinct distribution of m6A in the transcriptome with special enrichment in long internal exons, 39UTRs and around stop codons was uncovered by early biochemical work and later on antibody based sequencing techniques. The so called m6A writer, reader and eraser machinery is responsible for the dynamic and with that regulatory nature of the m6A modification. As m6A writer, the human N6-methyltransferase complex (MTC) cotranscriptionally methylates the central adenine within a RRACH (preferably GGACU) sequence context to form m6A in the nascent RNA chain.9–15 The catalytic core of the complex is formed by the two proteins METTL3 and METTL14, with the active site located in the methyltransferase domain (MTD) of METTL3.16–18 The DPPW motif near the methyl donor S-adenosylmethionine (SAM) binding site in this MTD was postulated to bind the target adenine during catalysis. Moreover, a positively charged groove in the METTL3-METTL14 interface, the C-terminal RGG domain in METTL14 and the zinc finger motifs in METTL3 were identified as important domains for RNA binding. However, to date there are no full-length or substrate-RNA-bound structures of the catalytic METTL3-METTL14 complex.
In addition, a set of accessory proteins assembles to the METTL3-METTL14 heterodimer to form the full MTC, mediated by WTAP that firmly binds to the N-terminal leader helix in METTL3.20 WTAP was shown to locate the whole complex to the nuclear speckles and can modulate m6A deposition to specific sites in the RNA. Moreover, WTAP acts as binding platform for other accessory proteins including VIRMA, RBM15, ZC3H13 and HAKAI that are mostly identified to mediate position specific methylation. For example, RBM15 was shown to mediates region-selective methylation in a WTAP dependent manner, directing specificity towards U-rich sequences.
The observed specificity of the methyltransferase complex to methylate only site specific DRACH sequenced is still poorly understood. Some possible modulators like the role of the accessory proteins are under investigation, however, the structural context of the RNA methylation sites or a structural preference of the complex have been mainly neglected so far. Moreover, the structural dynamics of this methylation process still remain elusive. This thesis contributes to the afore-mentioned aspects by analysis of the methylation process regarding RNA structure sensitivity with enzymatic activity assays and its dynamic nature by implementing a smFRET approach.
We hypothesized the target RNA secondary structure to be an additional important modulator of methylation efficiency, based on the RNA binding elements of the complex (positively charged binding groove, zinc finger domain, RGG domain) and the supposed target adenine binding in the active site. Here, we postulated the possibility for a flipped-out adenine to be of special relevance, which is closely related to the local stability of the target adenine containing structure. Moreover, efficient binding of the protein complex to the RNA should require the ability to anchor the RNA on both sides of the target sequence.
Parallel global edge switching for the uniform sampling of simple graphs with prescribed degrees
(2023)
The uniform sampling of simple graphs matching a prescribed degree sequence is an important tool in network science, e.g. to construct graph generators or null-models. Here, the Edge Switching Markov Chain (ES-MC) is a common choice. Given an arbitrary simple graph with the required degree sequence, ES-MC carries out a large number of small changes, called edge switches, to eventually obtain a uniform sample. In practice, reasonably short runs efficiently yield approximate uniform samples.
In this work, we study the problem of executing edge switches in parallel. We discuss parallelizations of ES-MC, but find that this approach suffers from complex dependencies between edge switches. For this reason, we propose the Global Edge Switching Markov Chain (G-ES-MC), an ES-MC variant with simpler dependencies. We show that G-ES-MC converges to the uniform distribution and design shared-memory parallel algorithms for ES-MC and G-ES-MC. In an empirical evaluation, we provide evidence that G-ES-MC requires not more switches than ES-MC (and often fewer), and demonstrate the efficiency and scalability of our parallel G-ES-MC implementation.
This thesis deals with several aspects of non-perturbative calculations in low-dimensional quantum field theories. It is split into two main parts:
The first part focuses on method development and testing. Using exactly integrable QFTs in zero spacetime dimensions as toy models, the need for non-perturbative methods in QFT is demonstrated. In particular, we focus on the functional renormalization group (FRG) as a non-perturbative exact method and present a novel fluid-dynamic reformulation of certain FRG flow equations. This framework and the application of numerical schemes from the field of computational fluid dynamics (CFD) to the FRG is tested and benchmarked against exact results for correlation functions. We also draw several conclusions for the qualitative understanding and interpretation of renormalization group (RG) flows from this fluid-dynamic reformulation and discuss the generalization of our findings to realistic higher-dimensional QFTs.
The topics discussed in the second part are also manifold. In general, the second part of this thesis deals with the Gross-Neveu (GN) model, which is a prototype of a relativistic QFT. Even though being a model in two spacetime dimensions, it shares many features of realistic models and theories for high-energy particle physics, but also emerges as a limiting case from systems in solid state physics. Especially, it is interesting to study the model at non-vanishing temperatures and densities, thus, its thermodynamic properties and phase structure.
First, we use this model to test and apply our findings of the first part of this thesis in a realistic environment. We analyze how the fluid-dynamic aspects of the FRG realize themselves in the RG flow of a full-fledged QFT and how we profit from this numeric framework in actual calculations. Thereby, however, we also aim at answering a long-standing question: Is there still symmetry breaking and condensation at non-zero temperatures in the GN model, if one relaxes the commonly used approximation of an infinite number of fermion species and works with a finite number of fermions? In short: Is matter (in the GN model) in a single spatial dimension at non-zero temperature always gas-like?
In general, we also use the GN model to learn about the correct description of QFTs at non-zero temperatures and densities. This is of utmost relevance for model calculations in low-energy quan- tum chromodynamics (QCD) or other QFTs in medium and we draw several conclusions for the requirements for stable calculations at non-zero chemical potential.
The Compressed Baryonic Matter (CBM) is one of the core experiments at the future Facility for Anti-proton and Ion Research (FAIR), Darmstadt, Germany. Its goal is to investigate nuclear matter characteristics at high net-baryon densities and moderate temperatures. The Silicon Tracking System (STS) is a central detector system of CBM.
It is placed inside a 1Tm magnet and operated at a temperature of about −10 °C to keep radiation-induced bulk current in the 300μm double-sided microstrip silicon sensors low. The design of the STS aims to minimize the material budget in the detector acceptance (2.5° < θ < 25°). In order to do so, the readout electronics is placed outside the active area, and the analog signals are transported via ultra-thin micro-cables. The STS comprises eight tracking stations with 876 modules. Each module is assembled on a carbon fiber ladder, which is subsequently mounted in the C-shaped aluminum frame.
The scope of the thesis focused on developing a modular control system framework that can be implemented for different sizes of experimental setups. The developed framework was used for setups that required a remote operation, like the irradiation of the powering modules for the front-end electronics (FEE), but also in laboratory-based setups where the automation and archiving were needed (thermal cycling of the STS electronics).
The low voltage powering modules will be placed in the vicinity of the experiment, therefore they will experience a total dose of up to 40mGy over the 10 years of STS lifetime.
To estimate the effects of the radiation on the low-voltage module performance, a dedicated irradiation campaign took place. It aimed at estimating the rate of radiation induced soft errors, that lead to the switch off of the FEE.
Regular power cycles of multiple front-end boards (FEBs) pose a risk to the experiment operation. Firstly, such behavior could negatively influence the physics performance but also have deteriorating effects on the hardware. It was further assessed what are the limitations of the FEBs with respect to the thermal cycling and the mechanical stress. The results served as an indication of possible failure modes of the FEB at the end of STS lifetime. Failure modes after repeated cycles and potential reasons were determined (e.g., Coefficient of Thermal Expansion (CTE) difference between the materials).
Due to the conditions inside the STS efficient temperature and humidity monitoring and control are required to avoid icing or water condensation on the electronics or silicon sensors. The most important properties of a suitable sensor candidate are resilience to the magnetic field, ionizing radiation tolerance, and fairly small size.
A general strategy for ambient parameters monitoring inside the STS was developed, and potential sensor candidates were chosen. To characterize the chosen relative humidity sensors the developed control framework was introduced. A sampling system with a ceramic sensor and Fiber Optic Sensors (FOS) were identified as reliable solutions for the distributed sensing system. Additionally, the industrial capacitive sensors will be used as a reference during the commissioning.
Two different designs of FOS were tested: a hygrometer and 5 sensors multiplexed in an array. The FOS hygrometer turned out to be a more reliable solution. One of the possible reasons for a worse performance is a relatively low distance between the subsequent sensors (15 cm) and a thicker coating. The results obtained from the time response study pointed out that the thinner coating of about 15μm should be a good compromise between the humidity sensitivity and the time response.
The implementation of the containerized-based control system framework for the mSTS is described in detail. The deployed EPICS-based framework proved to be a reliable solution and ensured the safety of the detector for almost 1.5 years. Moreover, the data related to the performance of the detector modules were analyzed and significant progress in the quality of modules was noted. Obtained data was also used to estimate the total fluence, which was based on the leakage current changes.
The developed framework provided a unique opportunity to automate and control different experimental setups which provided crucial data for the STS. Furthermore, the work underlines the importance of such a system and outlines the next steps toward the realization of a reliable Detector Control System for STS.
Metabolism has long served as a broad organizing concept in Russian and Soviet culture for the exchange of material and energy between organisms and their environment. The Russian term 'obmen veshchestv', literally meaning "exchange of substances", semantically ranges beyond the Latinate 'metabolizm' (metabolism) and provides a framework for reflecting on bodies and material objects as open systems engaged in a constant process of transformation. 'Obmen veshchestv' appears in public discourse in mid-19th century Russia as a calque from the German term 'Stoffwechsel' (or 'Wechsel der Materie'). Its usage in Russia reflects the enduring influence of German science. In this entry, I will explore the development and expansion of this concept of material and energy exchange between organisms and their environment in Russia and the Soviet Union. In the course of a century, metabolism migrated from discussions of plant nutrition into physiology, thermodynamics, and ultimately into the Soviet practice of state economic planning. This entry will therefore pay particular attention to the early Soviet period when existing debates on metabolism took on new urgency as tools for praxis on every scale, from the body of the individual worker to humanity's future collective management of planetary material and energy flows.
Xylose, an abundant sugar fraction of lignocellulosic biomass, is a five-carbon skeleton molecule. Since decades, utilization of this sugar has gained much attention and has been in particular focus as a substrate for production of biofuels like ethanol by microbial hosts, including Saccharomyces cerevisiae. In this yeast, xylose is naturally not used as a carbon source, but its utilization could be achieved by metabolic engineering either via the oxidoreductive route or through the isomerase pathway. Both pathways share xylulose as a common intermediate that must be phosphorylated before entering the endogenous metabolism via the non-oxidative pentose phosphate pathway (noxPPP). Besides this, in some bacteria a non-phosphorylating oxidative pathway for xylose degradation exists, known as Weimberg pathway, where a molecule of xylose is converted by a series of enzymes - xylose dehydrogenase (XylB), xylonate dehydratase (XylD), 3-keto-2-deoxy-xylonate dehydratase (XylX) and α-ketoglutarate semialdehyde dehydrogenase (KsaD) - to form α-ketoglutarate (AKG). Besides having several useful properties as a product, AKG could also be used for cell growth as an intermediate of the tricarboxylic acid (TCA) cycle. One target of the present study is to establish a functional Weimberg pathway in S. cerevisiae. Previous studies have shown that this task is not trivial, for instance due to the toxicity of xylonate (the first metabolite of the pathway) and the involvement of an iron-sulfur cluster dependent enzyme, the D-xylonate dehydratase. The assembly of iron-sulfur clusters on a heterologous protein in yeast is known to be challenging.
To establish the Weimberg pathway in yeast, the genes xylB, xylD, and xylX were obtained from Caulobacter cresentus and ksaD was from Corynebacterium glutamicum. In a variant, the dehydratase xylD was replaced with orf41 from Arthrobacter nicotinovorans, which is believed to be independent of iron-sulfur clusters. Growth of yeast cells on xylose as a sole carbon source was expected as an indicator of a functional Weimberg pathway. However, the heterologous expression of the codon optimized genes was not sufficient to reach this goal. Due to the complexity of the interactions of the heterologous pathway with the endogenous cellular processes, it was assumed that potential limitations could be overcome by adaptive laboratory evolution, using xylose as a sole source of carbon. Increasing selection pressure was applied on a strain with Weimberg pathway genes integrated into the genome over several generations. As a variant of the evolutionary engineering approach, mutator strains were generated. For this, RAD27 and MSH2 genes were deleted, which are involved in nucleotide excision and mismatch repair mechanisms, respectively. Some of the resulting strains PRY24, PRY25, PRY27 and PRY28 were able grow in xylose as a sole carbon source after evolutionary engineering. As a control, a non-mutator strain PRY19 was also included. Strikingly, only the mutator strains were able to consume xylose as a sole carbon source, which shows the feasibility of the approach.
In addition to the mutator strain strategy, a further approach employed in the present study was the simultaneous expression of the Weimberg pathway in the cytosol and mitochondria. This was based on the reasoning that the iron-sulfur cluster biogenesis on XylD may be improved in the organelle and that the AKG is an intermediate of the TCA cycle. In the strain AHY02, all enzymes of the pathway were tagged with mitochondrial targeting signals in addition to a full cytosolically localized pathway. The localization of the mitochondrial variants was confirmed by fluorescence microscopy. Together with AHY02, CEN.PK2-1C wild type strain was also included as a control for evolution. When a selection pressure on xylose was applied, both strains - AHY02 and CEN.PK2-1C - were able to grow in the course of evolution. Deletion of the xylulokinase (XKS1) gene was found to be detrimental for both evolved strains in xylose-containing media. This suggests that the evolution of the endogenous oxidoreductive and noxPPP genes is responsible for growth of the evolved cells. For the evolved strain AHY02, it could also be possible that the Weimberg pathway genes supported to growth in addition to the oxidoreductive route. To elucidate the underlying molecular mechanisms, genome sequencing and reverse engineering approaches would be necessary in future.
In addition to screening for growth on xylose as a sole carbon source, a less stringent screening system was created to examine even a minor flux of xylose towards AKG. For this, all genes necessary for conversion of isocitrate to AKG where deleted, yielding a glutamate auxotrophic strain. In this system, the cells can grow on other carbon sources, whereas xylose is only provided as a source of AKG for the synthesis of glutamate...
Deviance detection describes an increase of neural response strength caused by a stimulus with a low probability of occurrence. This ubiquitous phenomenon has been reported for multiple species, from subthalamic areas to auditory cortex. While cortical deviance detection has been well characterised by a range of studies covering neural activity at population level (mismatch negativity, MMN) as well as at cellular level (stimulus-specific adaptation, SSA), subcortical deviance detection has been studied mainly on cellular level in the form of SSA. Here, we aim to bridge this gap by using noninvasively recorded auditory brainstem responses (ABRs) to investigate deviance detection at population level in the lower stations of the auditory system of a hearing specialist: the bat Carollia perspicillata. Our present approach uses behaviourally relevant vocalisation stimuli that are closer to the animals' natural soundscape than artificial stimuli used in previous studies that focussed on subcortical areas. We show that deviance detection in ABRs is significantly stronger for echolocation pulses than for social communication calls or artificial sounds, indicating that subthalamic deviance detection depends on the behavioural meaning of a stimulus. Additionally, complex physical sound features like frequency- and amplitude-modulation affected the strength of deviance detection in the ABR. In summary, our results suggest that at population level, the bat brain can detect different types of deviants already in the brainstem. This shows that subthalamic brain structures exhibit more advanced forms of deviance detection than previously known.
We report a new measurement of the production of electrons from open heavy-flavor hadron decays (HFEs) at mid-rapidity (|y|< 0.7) in Au+Au collisions at sNN−−−√=200 GeV. Invariant yields of HFEs are measured for the transverse momentum range of 3.5<pT<9 GeV/c in various configurations of the collision geometry. The HFE yields in head-on Au+Au collisions are suppressed by approximately a factor of 2 compared to that in p+p collisions scaled by the average number of binary collisions, indicating strong interactions between heavy quarks and the hot and dense medium created in heavy-ion collisions. Comparison of these results with models provides additional tests of theoretical calculations of heavy quark energy loss in the quark-gluon plasma.
For the search of the chiral magnetic effect (CME), STAR previously presented the results from isobar collisions (9644Ru+9644Ru, 9640Zr+9640Zr) obtained through a blind analysis. The ratio of results in Ru+Ru to Zr+Zr collisions for the CME-sensitive charge-dependent azimuthal correlator (Δγ), normalized by elliptic anisotropy (v2), was observed to be close to but systematically larger than the inverse multiplicity ratio. The background baseline for the isobar ratio, Y=(Δγ/v2)Ru(Δγ/v2)Zr, is naively expected to be (1/N)Ru(1/N)Zr; however, genuine two- and three-particle correlations are expected to alter it. We estimate the contributions to Y from those correlations, utilizing both the isobar data and HIJING simulations. After including those contributions, we arrive at a final background baseline for Y, which is consistent with the isobar data. We extract an upper limit for the CME fraction in the Δγ measurement of approximately 10% at a 95% confidence level on in isobar collisions at sNN−−−√=200 GeV.
Flow coefficients (v2 and v3) are measured in high-multiplicity p+Au, d+Au, and 3He+Au collisions at a center-of-mass energy of √sNN = 200 GeV using the STAR detector. The measurements are conducted using two-particle correlations with a pseudorapidity requirement of |η|< 0.9 and a pair gap of |Δη|>1.0. The primary focus of this paper is on the analysis procedures and methods employed, especially the subtraction of non-flow contributions. Four well-established non-flow subtraction methods are applied to determine vn, and their validity is verified using the HIJING event generator. The vn values are compared across the three collision systems at similar multiplicities, which allows for cancellation of final state effects and isolation of the impact of the initial geometry. While the v2 values display differences among these collision systems, the v3 values are largely similar, consistent with the expectations of subnucleon fluctuations in the initial geometry. The ordering of vn differs quantitatively from previous measurements obtained using two-particle correlations with a larger rapidity gap; this difference could be partially attributed to the effects of flow decorrelations in the rapidity direction.
We report a measurement of exclusive J/ψ photoproduction in Au+Au ultra-peripheral collisions at sNN−−−√=200 GeV using the STAR detector. For the first time, i) the rapidity correlation between J/ψ photoproduction and neutron emission from nuclear breakups has been experimentally measured; ii) nuclear suppression factors are measured for both the coherent and incoherent J/ψ production. At photon-nucleon center-of-mass energy of 25.0 GeV, the coherent and incoherent J/ψ cross sections of Au nuclei are found to be 71±10% and 36±7%, respectively, of that of free protons. The stronger suppression observed in the incoherent production provides a new experimental handle to study the initial-state parton density in heavy nuclei. Data are compared with theoretical models quantitatively.
We report a new measurement of the production of electrons from open heavy-flavor hadron decays (HFEs) at mid-rapidity (|y|< 0.7) in Au+Au collisions at sNN−−−√=200 GeV. Invariant yields of HFEs are measured for the transverse momentum range of 3.5<pT<9 GeV/c in various configurations of the collision geometry. The HFE yields in head-on Au+Au collisions are suppressed by approximately a factor of 2 compared to that in p+p collisions scaled by the average number of binary collisions, indicating strong interactions between heavy quarks and the hot and dense medium created in heavy-ion collisions. Comparison of these results with models provides additional tests of theoretical calculations of heavy quark energy loss in the quark-gluon plasma.
We measure triangular flow relative to the reaction plane at 3 GeV center-of-mass energy in Au+Au collisions at RHIC. A significant v3 signal is observed for protons, whose magnitude increases for higher rapidity, higher transverse momentum, and more peripheral collisions. The triangular flow is essentially rapidity-odd with a rapidity slope at mid-rapidity, dv3/dy|(y=0), opposite in sign compared to the slope for directed flow. No significant v3 signal is observed for charged pions and kaons. Comparisons with models suggest that a mean field potential is required to describe these results, and that the triangular shape of the participant nucleons is the result of stopping and nuclear geometry.
The STAR Collaboration presents measurements of the semi-inclusive distribution of charged-particle jets recoiling from energetic direct-photon γdir and neutral-pion (π0) triggers in p+p and central Au+Au collisions at sNN−−−√=200 GeV over a broad kinematic range, for jet resolution parameters R=0.2 and 0.5. Medium-induced jet yield suppression is observed to be larger for R=0.2 than for 0.5, reflecting the angular range of jet energy redistribution due to quenching. The magnitude of suppression is similar for γdir- and π0-triggered data, which constrains the color-charge and path-length dependence of jet quenching. Theoretical model calculations incorporating jet quenching do not fully describe the measurements.
The STAR Collaboration presents measurements of the semi-inclusive distribution of charged-particle jets recoiling from energetic direct-photon γdir and neutral-pion (π0) triggers in p+p and central Au+Au collisions at √sNN=200 GeV over a broad kinematic range, for jet resolution parameters R=0.2 and 0.5. Medium-induced jet yield suppression is observed to be larger for R=0.2 than for 0.5, reflecting the angular range of jet energy redistribution due to quenching. The magnitude of suppression is similar for γdir- and π0-triggered data, which constrains the color-charge and path-length dependence of jet quenching. Theoretical model calculations incorporating jet quenching do not fully describe the measurements.
We report a new measurement of transverse single-spin asymmetries for dijet production in collisions of polarized protons at s√ = 200 GeV. Possible correlations between the proton spin and the transverse momenta of its partons, mutually orthogonal, with each perpendicular to the proton momentum direction, are probed at high Q2 ≈160 GeV2. The associated Sivers observable ⟨kT⟩, the average parton transverse momentum, is extracted using simple kinematics. Nonzero Sivers effects are observed for the first time in proton-proton collisions, but only when the jets are sorted by their net charge, which enhances the u- or d-quark contributions to separate data samples. This also enables a determination of the individual partonic contributions to the observed asymmetries.
We report the first measurements of cumulants, up to 4th order, of deuteron number distributions and proton-deuteron correlations in Au+Au collisions recorded by the STAR experiment in phase-I of Beam Energy Scan (BES-I) program at the Relativistic Heavy Ion Collider (RHIC). Deuteron cumulants, their ratios, and proton-deuteron mixed cumulants are presented for different collision centralities covering a range of center of mass energy per nucleon pair sNN−−−√ = 7.7 to 200 GeV. It is found that the cumulant ratios at lower collision energies favor a canonical ensemble over a grand canonical ensemble in thermal models. An anti-correlation between proton and deuteron multiplicity is observed across all collision energies and centralities, consistent with the expectation from global baryon number conservation. The UrQMD model coupled with a phase-space coalescence mechanism qualitatively reproduces the collision-energy dependence of cumulant ratios and proton-deuteron correlations.
Jet-hadron correlations with respect to the event plane in √sNN = 200 GeV Au+Au collisions in STAR
(2023)
Angular distributions of charged particles relative to jet axes are studied in sNN−−−√ = 200 GeV Au+Au collisions as a function of the jet orientation with respect to the event plane. This differential study tests the expected path-length dependence of energy loss experienced by a hard-scattered parton as it traverses the hot and dense medium formed in heavy-ion collisions. A second-order event plane is used in the analysis as an experimental estimate of the reaction plane formed by the collision impact parameter and the beam direction. Charged-particle jets with 15<pT,jet< 20 and 20<pT,jet< 40 GeV/c were reconstructed with the anti-kT algorithm with radius parameter setting of \(R=0.4\) in the 20-50\% centrality bin to maximize the initial-state eccentricity of the interaction region. The reaction plane fit method is implemented to remove the flow-modulated background with better precision than prior methods. Yields and widths of jet-associated charged-hadron distributions are extracted in three angular bins between the jet axis and the event plane. The event-plane (EP) dependence is further quantified by ratios of the associated yields in different EP bins. No dependence on orientation of the jet axis with respect to the event plane is seen within the uncertainties in the kinematic regime studied. This finding is consistent with a similar experimental observation by ALICE in sNN−−−√ = 2.76 TeV Pb+Pb collision data.
Vladimir Vernadsky's concept of living matter is central to his biogeochemistry, the science he founded. For several reasons, his original understanding of living matter is one of the most complex notions in the history of the life sciences. First, biogeochemistry is by definition an interdisciplinary enterprise that embraces biology, including evolutionary theory, geology, and chemistry, and combines them into a unique research program. Second, if understood in the original sense as used by Vernadsky, living matter is a concept built into idiosyncratic metaphysics constructed around the so-called principle of life's eternity. Third, the concept of living matter reflects the specificity of Vernadsky's sophisticated philosophy of science as he insisted that 'scientific thought' is a planetary phenomenon as well as a geological force. In our contribution, we will introduce Vernadsky's concept of living matter in its historical context. Accordingly, we will also give some chronology of Vernadsky's work related to the growth of his biosphere concept highlighting the 'Ukrainian' period as it is in this period that he intensively elaborated on the notion of living matter. This will be followed by his theory of living matter as it was formulated in his major works of the later period. We are going to locate the notion of living matter within Vernadsky's theoretical system and demonstrate that he regarded his theory of the living as an evolutionary theory complementary to that of Charles Darwin from the very beginning. Additionally, we will briefly present Vladimir Beklemishev's concept of 'geomerida' which he developed at approximately the same time as Vernadsky was elaborating on his 'living matter' to highlight the specificity of the latter's methodology.
The essay will focus on three of the "many faces of irreversibility", sketching a history of irreversibility in 20th-century Russian thought: The abstract irreversibility of time in physics, the 'embodied' irreversibility of biological evolution and, finally, the irreversibility of cultural processes. The first part will trace the history of irreversibility in 19th-century physics and biology. The second part will discuss Vladimir Vernadsky's theory of biological time as an attempt to synthesize physical and biological irreversible processes ('neobratimye protsessy') as phenomena of asymmetry in space-time. The third part will look at the migration of scientific ideas of irreversibility into the theory of culture, i.e., Juri Lotman's semiotic theory of irreversibility as unpredictable and unrepeatable processes of culture. In this three-step sketch, the history of irreversibility will be outlined as one of spatialization (from an abstract law to the image of 'time's arrow') and of specialization (from the law of entropy to the case of the generation of meaning).
The cosmological implications of the Covariant Canonical Gauge Theory of Gravity (CCGG) are investigated. CCGG is a Palatini theory derived from first principles using the canonical transformation formalism in the covariant Hamiltonian formulation. The Einstein-Hilbert theory is thereby extended by a quadratic Riemann-Cartan term in the Lagrangian. Moreover, the requirement of covariant conservation of the stress-energy tensor leads to necessary presence of torsion. In the Friedman universe that promotes the cosmological constant to a time-dependent function, and gives rise to a geometrical correction with the EOS of dark radiation. The resulting cosmology, compatible with the ΛCDM parameter set, encompasses bounce and bang scenarios with graceful exits into the late dark energy era. Testing those scenarios against low-z observations shows that CCGG is a viable theory.
We investigate the thermodynamic geometry of the quark-meson model at finite temperature, T, and quark number chemical potential, μ. We extend previous works by the inclusion of fluctuations exploiting the functional renormalization group approach. We use recent developments to recast the flow equation into the form of an advection-diffusion equation. We adopt the local potential approximation for the effective average action. We focus on the thermodynamic curvature, R, in the (μ,T) plane, in proximity of the chiral crossover, up to the critical point of the phase diagram. We find that the inclusion of fluctuations results in a smoother behavior of R near the chiral crossover. Moreover, for small μ, R remains negative, signaling the fact that bosonic fluctuations reduce the capability of the system to completely overcome the fermionic statistical repulsion of the quarks. We investigate in more detail the small μ region by analyzing a system in which we artificially lower the pion mass, thus approaching the chiral limit in which the crossover is actually a second order phase transition. On the other hand, as μ is increased and the critical point is approached, we find that R is enhanced and a sign change occurs, in agreement with mean field studies. Hence, we completely support the picture that R is sensitive to a crossover and a phase transition, and provides information about the effective behavior of the system at the phase transition.
We compute the critical exponents of the O(N) model within the Functional Renormalization Group (FRG) approach. We use recent advances which are based on the observation that the FRG flow equation can be put into the form of an advection-diffusion equation. This allows to employ well-tested hydrodynamical algorithms for its solution. In this study we work in the local potential approximation (LPA) for the effective average action and put special emphasis on estimating the various sources of errors. Our results complement previous results for the critical exponents obtained within the FRG approach in LPA. Despite the limitations imposed by restricting the discussion to the LPA, the results compare favorably with those obtained via other methods.
Improved measurement of the branching fractions of the inclusive decays D⁺ → Kₛ⁰X and D⁰ → Kₛ⁰X
(2023)
By analyzing 2.93 fb−1 of 𝑒+𝑒− collision data taken at the center-of-mass energy of 3.773 GeV with the BESIII detector, the branching fractions of the inclusive decays 𝐷+→𝐾0 𝑆𝑋 and 𝐷0→𝐾0 𝑆𝑋 are measured to be (33.11±0.13±0.36)% and (20.75±0.12±0.20)%, respectively, where the first uncertainties are statistical and the second are systematic. These results are consistent with the world averages of previous measurements, but with much improved precision.
Standard applications of the consumption-based asset pricing model assume that goods and services within the nondurable consumption bundle are substitutes. We estimate substitution elasticities between different consumption bundles and show that households cannot substitute energy consumption by consumption of other nondurables. As a consequence, energy consumption affects the pricing function as a separate factor. Variation in energy consumption betas explains a large part of the premia related to value, investment, and operating profitability. For example, value stocks are typically more energy-intensive than growth stocks and thus riskier, since they suffer more from the oil supply shocks that also affect households.
Can consumption-based mechanisms generate positive and time-varying real term premia as we see in the data? I show that only models with time-varying risk aversion or models with high consumption risk can independently produce these patterns. The latter explanation has not been analysed before with respect to real term premia, and it relies on a small group of investors exposed to high consumption risk. Additionally, it can give rise to a “consumption-based arbitrageur” story of term premia. In relation to preferences, I consider models with both time-separable and recursive utility functions. Specifically for recursive utility, I introduce a novel perturbation solution method in terms of the intertemporal elasticity of substitution. This approach has not been used before in such models, it is easy to implement, and it allows a wide range of values for the parameter of intertemporal elasticity of substitution.
We propose a model with mean-variance foreign investors who exhibit a convex disutility associated to brown bond holdings. The model predicts that bond green premia should be smaller in economies with a closer financial account and highly volatile exchange rates. This happens because foreign intermediaries invest relatively less in such economies, and this lowers the marginal disutility of investing in polluting activities. We find strong empirical evidence in favor of this hypothesis using a global bond market dataset. Exchange rate volatility and financial account openness are thus able to explain the higher financing costs of green projects in emerging markets relative to advanced economies, especially when green bonds are denominated in local currency: a disadvantage that we can call the "green sin" of emerging economies.
The European bison was saved from the brink of extinction due to considerable conservation efforts since the early 20th century. The current global population of > 9,500 individuals is the result of successful ex situ breeding based on a stock of only 12 founders, resulting in an extremely low level of genetic variability. Due to the low allelic diversity, traditional molecular tools, such as microsatellites, fail to provide sufficient resolution for accurate genetic assessments in European bison, let alone from non-invasive samples. Here, we present a SNP panel for accurate high-resolution genotyping of European bison, which is suitable for a wide variety of sample types. The panel accommodates 96 markers allowing for individual and parental assignment, sex determination, breeding line discrimination, and cross-species detection. Two applications were shown to be utilisable in further Bos species with potential conservation significance. The new SNP panel will allow to tackle crucial tasks in European bison conservation, including the genetic monitoring of reintroduced populations, and a molecular assessment of pedigree data documented in the world’s first studbook of a threatened species.
This thesis comprises the usage of two commonly known hinge-binding moieties in drug discovery. First, the quinazoline scaffold of gefitinib (5) was utilized in a macrocyclization strategy to introduce selectivity. In general, the quinazoline hinge-binding moiety is a commonly used scaffold which can be found in 14% of approved kinase inhibitors. The most familiar applications are EGFR inhibitors such as gefitinib (5), erlotinib (6), afatinib, or dacomitinib for the treatment of NSCLC. But other kinases like CDK2, CDK4, or p38 are reported targets as well.
The N-phenylquinazolin-4-amine moiety of gefitinib (5) was conserved however, the residues at the aromatic ring in the linker were modified, the residue targeting the solvent-exposed region was varied, and the linker at the C6 position of the quinazoline was adjusted to enable the macrocyclization. An overview of the structural modifications is shown in Figure 35A.
Kinome-wide screening of gefitinib (5) revealed several off-targets besides EGFR (Figure 35B), making it an excellent starting point for a macrocyclization strategy. Introducing a linker to the N phenylquinazoline-4-amine scaffold and retaining the residues on the aromatic ring as well as the methoxy group targeting the solvent-exposed region improved the selectivity profile and the efficacy towards EGFR WT and its mutants. Truncation of the linker moiety led to the mutant selective macrocycle 26f with an excellent kinome-wide selectivity profile (Figure 35B). An inhibitor that is effective on EGFR mutations while ineffective on the EGFR WT could represent an enhancement of patient treatment, as it potentially causes less side effects. Further studies could determine the effect of the most promising macrocycles in lung cancer cell lines. Additionally, the pharmacokinetic properties could be optimized, e.g. by introducing solubilizing groups, targeting the solvent-exposed region.
The second scaffold comprises the 3-aminopyrazole-based hinge-binding moiety. It is a privileged scaffold in medicinal chemistry for the development of kinase inhibitors. Previous publications report the anti-proliferative and anti-cancer potential of pyrazole-based molecules. They play a crucial role in the treatment of various diseases and cancer types like inflammation disorders, lymphoma, or breast cancer. This scaffold can be found e.g. in the aurora kinase inhibitor tozasertib or in the promiscuous kinase inhibitor 23, published by Statsuk et. al. Rescreening compound 23 in a comprehensive kinase panel against 468 human protein kinases confirmed the unselective behavior with a selectivity score of S35 = 0.56 (Figure 36B), making it a great starting point for further optimizations. The N-(1H-pyrazol-3-yl)pyrimidin-4-amine scaffold was conserved however, the residues targeting the solvent-exposed region were varied and different linkers were attached.
The introduction of different residues at the pyrazole dramatically influenced the selectivity profile of the desired kinases. Ester moieties caused to a favorable combination of selectivity and potency towards the kinase of interest CDK16. The removal of additional residues at the pyrimidine, targeting the solvent-exposed region, increased the efficiency towards CDK16. Further optimization led to the highly potent and selective CDK16 inhibitor 98d (IC50 = 33 nM). NanoBRETTM screening against the complete CDK family revealed a preferred inhibition of the PCTAIRE and PFTAIRE subfamily with cellular IC50 values of 20 nM – 120 nM and 50 nM – 180 nM, respectively. A FUCCI cell cycle assay and viability assessment of 98d confirmed previously published results, reporting a G2/M cell cycle arrest followed by apoptosis and accumulation of p27 through knockout of CDK16 in SCC cells. Consequently, further studies could evaluate the anti-tumor activity of 98d in SCC and NSCLC or elucidate the effect of 98d in AMPK-related macroautophagy. 98d represents a novel tool compound to investigate the understudied kinases of the PCTAIRE family and enable to enlighten the biological role of those kinases.
Macrocyclization of the N-(1H-pyrazol-3-yl)pyrimidin-4-amine core resulted in the selective BMPR2 inhibitor 110a. It showed a good binding affinity towards BMPR2 with a KD value of 205 nM as well as a good potency with an IC50 value of 506 nM. A comprehensive selectivity screen against 468 kinases revealed an excellent selectivity profile with S35 = 0.01. As no BMPR2 inhibitors have been published so far, 110a represents a novel compound that may provide further insights into the canonical BMP pathway, noncanonical signaling, or its impact on BMPR2-associated diseases like PAH.
The introduction of additional residues targeting the solvent-exposed region shifted the selectivity towards the MST kinases. The exchange from the pyrimidine to a quinazoline moiety resulted in the highly potent and selective macrocyclic MST3 inhibitor 113c. NanoBRETTM measurements demonstrated the preferred inhibition of MST3 with IC50 values of 210 nM and 30 nM for intact and lysed cells, respectively. A weaker activity could be seen for MST4 with 1.8 µM and 510 nM, while MST1 and MST2 were not affected. To date, no selective MST3 inhibitors have been published, making 113c a valuable tool compound for further functional studies. As MST3 is influencing the cell cycle progression, 113c could be tested in a further cell cycle assay to elucidate the inhibitory effect of 113c on MST3 and consequently on the cell cycle. Furthermore, the anti-tumor activity of 113c in breast cancer could be determined, as Madsen et. al. reported a high MST3 and MST4 activity triggered by FAM40B mutations.
My aim in this paper is to make the debates about epistemic injustice fruitful for an analysis of trust in the knowledge of others. Epistemic trust is understood here in a broad sense: not only as trust in scientific knowledge or expert knowledge, but also as trust in implicit, positioned and experience-based knowledge. Using insights from discussions of epistemic injustice, I argue for three interrelated theses:
1. Questions of epistemic trust and trustworthiness cannot be answered with reference to individual virtue alone; rather, they have a structural component.
2. The rationality of epistemic trust must be analyzed against the background of social structures and social relations of domination.
3. Epistemic trust is (also) a political phenomenon and epistemically just relations depend on political transformation processes that promote equality.
A taxonomic study on twenty-nine species of jumping spiders from South China is presented. Twenty new species are diagnosed and described: Heliophanoides proszynskii Wang, Mi & Peng sp. nov. (♂♀), Myrmage lii Wang, Mi & Peng sp. nov. (♂♀), Myrmarachne hamata Wang, Mi & Peng sp. nov. (♂), M. xingrenensis Wang, Mi & Peng sp. nov. (♂♀), M. yinae Wang, Mi & Peng sp. nov. (♂♀), Phintella fodingensis Wang, Mi & Peng sp. nov. (♂♀), P. jiugongensis Wang, Mi & Peng sp. nov. (♂♀), P. liae Wang, Mi & Peng sp. nov. (♂), P. liui Wang, Mi & Peng sp. nov. (♂♀), P. subpanda Wang, Mi & Peng sp. nov. (♂♀), P. wandae Wang, Mi & Peng sp. nov. (♂♀), Ptocasius dian Wang, Mi & Peng sp. nov. (♂♀), P. subhubeiensis Wang, Mi & Peng sp. nov. (♂♀), Rhene elongata Wang, Mi & Peng sp. nov. (♂♀), Stertinius donglinsiensis Wang, Mi & Peng sp. nov. (♂♀), S. logunovi Wang, Mi & Peng sp. nov. (♂), Synagelides fanjingensis Wang, Mi & Peng sp. nov. (♂♀), Thyene xingrenensis Wang, Mi & Peng sp. nov. (♂♀), Toxeus fodingensis Wang, Mi & Peng sp. nov. (♂♀), and Yaginumaella zabkai Wang, Mi & Peng sp. nov. (♂♀). The genus Heliophanoides Prószyński, 1992 is redefined and two new combinations, transferred from the genus Phintella Strand, 1906, are proposed: H. tengchongensis (Lei & Peng 2013) comb. nov., and H. longlingensis (Lei & Peng 2013) comb. nov. The unknown sexes of the following six species are described for the first time: Phintella fanjingshan Li, Wang, Zhang & Chen, 2019, P. panda Huang, Wang & Peng, 2015, P. pygmaea (Wesołowska, 1981), P. sancha Cao & Li, 2016, P. wulingensis Huang, Wang & Peng, 2015, and Rhene yunnanensis (Peng & Xie, 1995). Brettus anchorum Wanless, 1979 and Phintella aequipeiformis Żabka, 1985 are newly recorded from China. Icius indicus (Simon, 1901) comb. nov. (transferred from Phintella) is re-described. Phintella levii Huang, Wang & Peng, 2015 is assigned to be a synonym of P. arcuata Huang, Wang & Peng, 2015. Thyene zhangi (Peng, Yin, Yan & Kim, 1998) comb. nov. is transferred from Plexippoides Prószyński, 1984, and T. bilaguncula (Xie & Peng, 1995) comb. nov. is transferred from Ptocasius Simon, 1885. Diagnostic illustrations of the twenty-nine species and the distributional maps of the studied specimens are provided.
The species of Rhyacobates Esaki, 1923 are reviewed. Three new species, R. bui sp. nov. from Guangxi, China and Lạng Sơn, Vietnam, R. elongatus sp. nov. from Hà Tĩnh, Vietnam and R. turgidus sp. nov. from Sichuan and Chongqing, China are described. Supplemental descriptions, diagnoses and new distribution records are provided for the fourteen previously known species, i.e., R. abdominalis Andersen & Chen, 1995, R. anderseni Tran & Yang, 2006, R. angustus Tran & Nguyen, 2016, R. chinensis Hungerford & Matsuda, 1959, R. constrictus Tran & Nguyen, 2016, R. edentatus Andersen & Chen, 1995, R. gongvo Tran & Yang, 2006, R. lundbladi (Hungerford, 1957), R. malaisei Andersen & Chen, 1995, R. recurvus Andersen & Chen, 1995, R. scorpio Andersen & Chen, 1995, R. svenhedini (Lundblad, 1934), R. takahashii Esaki, 1923, and R. zetteli Tran & Nguyen, 2016. Photographs and line drawings of the habitus, diagnostic characteristics of both sexes, the habitat and in-situ photographs are presented. A revised key to the species of Rhyacobates is also provided.
Electrospinning is a versatile and promising drug delivery technology for the development of tailor-made drug delivery systems for various clinical applications. By applying high voltages to drug-loaded polymer solutions, solid polymeric nanofibers can be generated, which encapsulate active pharmaceutical ingredients (APIs) into their polymer matrix. During the electrospinning process, the fibers are deposited on a collector and form a nonwoven network of drug-loaded polymer fibers. These fibers are spatially distributed in aligned or random orientation, providing the opportunity to design highly tunable structural and mechanical properties, which can be adapted to the biological requirements of the intended application site. The mechanically flexible fiber networks can therapeutically be administered to a multitude of pharmaceutical application sites. Their highly porous fiber structure exhibits a large surface-to-volume ratio, which is ideal for controlled drug release kinetics from the polymer matrix upon contact with biological fluids, such as tear fluid, saliva, mucus, wound exudate or gastro-intestinal fluid. For application at the target site, fiber mats are cut into patches. As the patch size determines the quantity of applied API, the electrospinning process must ensure homogeneous distribution of the API throughout the entire fiber mat area.
In this thesis, electrospinning was established as a formulation technology for the rational fabrication of tailor-made multifunctional drug carrier systems for local and site-specific drug delivery to the epithelial interfaces skin, oral mucosa as well as cornea. For adequate characterization and analysis of the drug delivery systems, a broad panel of robust and predictive analytical tools, based of novel investigation techniques for physicochemical characterization of electrospun fibers, was developed.
The initial part of the thesis thematically focuses on the development of predictive analytical techniques, to determine fiber morphology and physicochemical properties, as well as fiber composition and drug release. By designing two model formulations with contrasting properties, and subsequent analysis and characterization with a set of newly developed techniques and state-of-the-art methods, a comprehensive toolset has been made available and evaluated, aiming at advancing and standardizing respective techniques in the scientific field of electrospun drug delivery systems.
Starting with the initiation of the electrospinning formulation process, which often relies on empirical data rather than analytical methods to predict successful processability, analysis of rheological properties of electrospinning solutions was used to rationally detect the minimum polymer concentration required for electrospinning.
For analysis of fiber morphology, scanning electron microscopy is a common technique. However, little attention is given to underlying readout parameters. By analyzing the fiber orientation and diameter of the respective fibers, predictive results regarding mechanical properties could be obtained, which were subsequently confirmed by measuring elongation force with tensile testing. Confocal Raman microscopy, a label-free method for chemically- selective imaging of the fiber samples, was introduced as a complementary visualization technique, enabling the detection of fiber composition and drug distribution.
A novel technique for investigation of water contact angles on the fiber surface of highly hydrophilic polymers was introduced, which provides predictive data regarding interaction with body fluids and the resulting drug release kinetics. Subsequent release testing in a newly developed setup for analyzing drug release from electrospun fibers in low-volume body compartments, confirmed the anticipated drug release kinetics from measurement of the surface hydrophilicity.
By combining complementary analytical methods, including spectral composition analysis, morphology visualization, characterization of physico-chemical properties and drug release kinetics, as well as the application of multivariate data analysis, a robust and predictive toolset has been established, which can support comparability of future electrospinning studies and the translation from the lab bench into clinics.
Based on the analytical toolset, the main part of the thesis focuses on the development and preparation of electrospun platform drug delivery systems for application on epithelial barriers. Electrospun fiber mats are thin, flat, and mechanically flexible, which allows close adherence to epithelial surfaces and reduction of diffusion paths, which enables efficient drug delivery to the skin, oral mucosa, as well as the cornea.
Electrospun fibers bear a high potential for application as wound dressings, while simultaneously controlling the local delivery of APIs to the wound area. Their close resemblance to the extracellular matrix of human skin provides a suitable microenvironment for cellular proliferation and migration for wound closure. In this work, insulin, a fragile proteohormone with growth factor characteristics, was successfully encapsulated into the core of coaxially electrospun fibers, thus maintaining bioactivity throughout and after the electrospinning process. The shell has been designed from biocompatible polymers, which, upon contact with aqueous wound exudate, partially dissolve and form pores through which bioactive insulin is released in a controlled manner. The shell layer provides a hydrophilic surface for interaction with body fluids and skin cells, and possesses substantial mechanical strength, flexibility, and high tensile elongation required for application on wounds. The biocompatibility of the wound dressing was investigated by interaction with primary human dermal fibroblasts and keratinocytes, which displayed healthy cell morphologies without indicating any elevated levels of cytotoxicity markers.
To investigate the effect of insulin on cell migration, in vitro scratch assays on human skin cells were performed. Increased cellular migration speed and wound closure could be observed, indicating improved wound healing. Bio relevance of in vitro wound healing potential results was advanced by development of 3D ex vivo human epidermal skin wound models from reduction surgery donor material. These complex wound models were treated with electrospun insulin fibers and analyzed by proteome analysis to reveal significant increases in wound healing-associated signaling pathways, which could be attributed to a material-driven remarkably positive impact on wound healing of the electrospun fibers...
Anarchival practises : the Clanwilliam Arts Project as re-imagining custodianship of the past
(2023)
Where is the past? It is not really behind us, but with us, constantly imagined and re-imagined in public discourse through historical narrations. Using the Clanwilliam Arts Project as a case study, this volume is founded on the 'anarchive', a conceptual constellation that positions the past in relation to the present, bringing into view strategies to facilitate remembering beyond the colonial archive.
Investigators in the cognitive neurosciences have turned to Big Data to address persistent replication and reliability issues by increasing sample sizes, statistical power, and representativeness of data. While there is tremendous potential to advance science through open data sharing, these efforts unveil a host of new questions about how to integrate data arising from distinct sources and instruments. We focus on the most frequently assessed area of cognition - memory testing - and demonstrate a process for reliable data harmonization across three common measures. We aggregated raw data from 53 studies from around the world which measured at least one of three distinct verbal learning tasks, totaling N = 10,505 healthy and brain-injured individuals. A mega analysis was conducted using empirical bayes harmonization to isolate and remove site effects, followed by linear models which adjusted for common covariates. After corrections, a continuous item response theory (IRT) model estimated each individual subject’s latent verbal learning ability while accounting for item difficulties. Harmonization significantly reduced inter-site variance by 37% while preserving covariate effects. The effects of age, sex, and education on scores were found to be highly consistent across memory tests. IRT methods for equating scores across AVLTs agreed with held-out data of dually-administered tests, and these tools are made available for free online. This work demonstrates that large-scale data sharing and harmonization initiatives can offer opportunities to address reproducibility and integration challenges across the behavioral sciences.
t. This paper presents a taxonomic review of the genus Melanocanthon Halffter, a group of ball-rolling (telocoprid) dung beetles (Coleoptera: Scarabaeidae: Scarabaeinae) endemic to eastern North America. The genus comprises five species, each keyed, diagnosed, illustrated and presented with information on distribution, relationships, and biology: Melanocanthon punctaticollis (Schaeffer), M. granulifer (Schmidt), M. nigricornis (Say), M. bispinatus (Robinson) and Melanocanthon vulturnus Edmonds, new species.
ZooBank registration. urn:lsid:zoobank.org:pub:FA7D5D5E-CEB8-48ED-A442-74C315FCF5E4
A faunal study for the order Phasmatodea of the Chicaque Natural Park is presented, including a list of species found, descriptions, redescriptions, and biological notes. A total of nine species were found and studied; two new genera: Ramandeun new genus, Nubilophasma new genus, and four new species: Atratomorpha jorgei new species, Isagoras franciscoverai new species, Nubilophasma chicaquensis new genus and new species, and Ramandeum coronatum new genus and new species are described. The description of the eggs of the new taxa, of the previously unknown eggs of Paraceroys quadrispinosus (Redtenbacher, 1906), and the redescription of the eggs of Libethra rabdota Stål, 1875, and Libethra inchoata Brunner von Wattenwyl, 1907 are provided. Additional comments on the ecology and morphological variation of the reviewed taxa are included. Finally, further studies on the stick insect fauna of the Colombian Andes are discussed and recommended to provide more information to broaden the understanding of the species that inhabit this complex mountain system.
ZooBank registration. urn:lsid:zoobank.org:pub:7D34FF9A-CDEE-4DD4-A643-E0F467E00A5B
Shallow meritocracy
(2023)
Meritocracies aspire to reward hard work and promise not to judge individuals by the circumstances into which they were born. However, circumstances often shape the choice to work hard. I show that people's merit judgments are "shallow" and insensitive to this effect. They hold others responsible for their choices, even if these choices have been shaped by unequal circumstances. In an experiment, US participants judge how much money workers deserve for the effort they exert. Unequal circumstances disadvantage some workers and discourage them from working hard. Nonetheless, participants reward the effort of disadvantaged and advantaged workers identically, regardless of the circumstances under which choices are made. For some participants, this reflects their fundamental view regarding fair rewards. For others, the neglect results from the uncertain counterfactual. They understand that circumstances shape choices but do not correct for this because the counterfactual—what would have happened under equal circumstances—remains uncertain.
The genus Parandes Muir, 1925 (Cixiinae, Andini) is recorded from China for the first time with two new species, Parandes circinatus Wang & Chen sp. nov. and Parandes fuscus Wang & Chen sp. nov. Color images for the adults of the two new species and line drawings for the genitalia are provided. A key is presented to separate all species within the genus.
Adenomera is a genus of Neotropical leaf-litter frogs widely distributed in South America and regarded taxonomic-wise challenging. One of these is the open-habitat Adenomera diptyx from Paraguay, which may correspond to a species complex. An integrative analysis of morphological variation, in combination with acoustic and molecular data of several populations from Argentina, Paraguay, and Brazil resulted in the recharacterization of nominal A. diptyx and the description of a new, closely related species. Adenomera diptyx is recognized by its advertisement call given at a high repetition rate (176–299 per minute), and the dorsal color pattern consisting of a light mid-dorsal line and a dark brown interorbital bar with irregular black edges. In comparison with A. diptyx, the new species, Adenomera guarani sp. nov., produces its advertisement call at a lower repetition rate (73–147 per minute), and the dorsal color pattern consists of a light, broad, mid-dorsal stripe and a mask-like patch in the interorbital region. The redefinition of A. diptyx will contribute to future studies focusing on the taxonomic status of other genetic lineages tentatively assigned to this species complex, which could represent additional unnamed species in the open-habitat Adenomera clade.
Few species of Japygidae (Diplura) have been discovered in cave ecosystems despite their importance as large predators. A small collection of rare specimens of this hexapod group has allowed to explore the taxonomy of japygids from caves in New Zealand, Morocco and South Africa, and to describe one new genus: Imazighenjapyx Sendra & Sánchez-García gen. nov., as well as four new species: Austrjapyx wynbergensis Sendra & Sánchez-García sp. nov., Imazighenjapyx marocanus Sendra & Sánchez-García gen. et sp. nov., Opisthjapyx naledi Sendra & Sánchez-García sp. nov. and Teljapyx aotearoa Sendra & Sánchez-García sp. nov. For each of the new taxa we give a comprehensive description of their habitats. These new findings resulted in a revision of the distribution and allowed to re-evaluate the morphological traits of the fifteen cave-adapted japygids species already known worldwide. The functional morphology of the remarkable abdominal pincers of Japygidae and their adaptation to predation are discussed, as well as their potential role in mating behaviour.
HER2 belongs to the ErbB sub-family of receptor tyrosine kinases and regulates cellular proliferation and growth. Different from other ErbB receptors, HER2 has no known ligand. Activation occurs through heterodimerization with other ErbB receptors and their cognate ligands. This suggests several possible activation paths of HER2 with ligand-specific, differential response, which so far remained unexplored. Using single-molecule tracking and the diffusion profile of HER2 as a proxy for activity, we measured the activation strength and temporal profile in live cells. We found that HER2 is strongly activated by EGFR-targeting ligands EGF and TGFα, yet with a distinguishable temporal fingerprint. The HER4-targeting ligands EREG and NRGβ1 showed weaker activation of HER2, a preference for EREG, and a delayed response to NRGβ1. Our results indicate a selective ligand response of HER2 that may serve as a regulatory element. Our experimental approach is easily transferable to other membrane receptors targeted by multiple ligands.
Intermediate Mass Ratio Inspirals (IMRIs) will be observable with space-based gravitational wave detectors such as the Laser Interferometer Space Antenna (LISA). To this end, the environmental effects in such systems have to be modeled and understood. These effects can include (baryonic) accretion disks and dark matter (DM) overdensities, so called spikes. For the first time, we model an IMRI system with both an accretion disk and a DM spike present and compare their effects on the inspiral and the emitted gravitational wave signal. We study the eccentricity evolution, employ the braking index and derive the dephasing index, which turn out to be complementary observational signatures. They allow us to disentangle the accretion disk and DM spike effects in the IMRI system.
Detection of morphologically indistinguishable cryptic species implies using an integrative taxonomic approach with a combination of molecular, contemporary morphological, ecological and other relevant analyses. Within a contemporary morphological analysis, two approaches are commonly used in hoverfly taxonomy: a geometric morphometric analysis of the wing and surstyle shape. Here, the importance of the R4+5 vein shape is tested in cryptic species delimitation within four Merodon species groups using linear and semilandmark geometric morphometric analyses. As expected, geometric morphometrics showed a stronger resolution compared to linear morphometrics. Linear morphometrics failed to detect differences related to sexual dimorphism or differences among the species M. pruni and M. obscurus. However, all cryptic species and sexes were separated with high significance based on the R4+5 vein shape. Moreover, obtained results concurred with the landmark-defined wing shape and molecular results published in previous studies. Additionally, combining two characters, the semilandmark R4+5 vein shape and the landmark-defined wing shape, provided more detailed and precise insights into the shape differences. Our results showed that the R4+5 vein shape stands out as an important character in species delimitation of hoverflies where the sinuation of this vein is present. Therefore, it can be beneficial as a single character or in combination with a landmark-based wing shape analysis.
Dysmicoccus brevipes (Cockerell) and Dysmicoccus neobrevipes Beardsley are major pests of pineapples, ornamentals, and vegetable crops in many countries around the world. The potential distribution of these mealybug pests into South Korea remains a prime concern because of their high incidence in interceptions screened during inspection. Hence, these species prompted a modelling effort to assess their potential risk of introduction. Potential risk maps were developed for these pests with the CLIMEX model based on occurrence records under environmental data. The potential distribution of these pests in South Korea in the 2020s, 2050s and 2090s is projected based on the RCP 8.5 climate change scenario. Results show that D. brevipes and D. neobrevipes have little potential for invasion in the exterior environment of South Korea due to high cold stress. However, for D. brevipes, three locations in Jejudo were predicted to be marginally suitable for this pest under future climate factors. In that respect, the results of these model predictions could be used to prepare a risk-based surveying program that improves the probability of detecting early D. brevipes and D. neobrevipes populations.
ZooBank registration. urn:lsid:zoobank.org:pub:CE2390B2-6C56-45E7-B4A7-BE30FEEB3F34
The planthopper family Caliscelidae (Hemiptera: Auchenorrhyncha: Fulgoromorpha) and the tribe Adenissini are recorded here for the first time from the Socotra Archipelago (Yemen). A new genus, Oceatra gen. nov., is described for two new species from Socotra Island – Oceatra litoralis gen. et sp. nov. (type species) from coastal sand dunes and salt marshes, and O. scandens gen. et sp. nov. from evergreen montane woodland and shrub communities of the Hagher mountains. Oceatra gen. nov. is similar to Perissana Metcalf, 1952 but differs in the structure of the male style and phallobase. A key to distinguish the genera of the subtribe Adenissina is provided.
Strange new spiders: on Roddenberryus, a new and unusual caponiid genus (Araneae, Caponiidae)
(2023)
The new nopine genus Roddenberryus gen. nov. is erected to include in total five species: three new species, R. kirk gen. et sp. nov. (male and female) from Costa Rica, R. spock gen. et sp. nov. (female) from Campeche, Mexico and R. mccoy gen. et sp. nov. (male) from Baja California Sur, Mexico, as well as two species previously misplaced in Caponina Simon, i.e., R. sargi (Pickard-Cambridge, 1899) gen. et comb. nov. from Guatemala and R. pelegrina (Bryant, 1940) gen. et comb. nov. from Cuba. A male specimen reported as C. sargi Pickard-Cambridge from Costa Rica by E. Kritscher (1957) is assigned to Roddenberryus kirk together with one female collected at the same locality. The new genus is characterized by the distally projected endites and a triangular, projected labium, a conformation unique among nopines; also by a triangular, very short, scaly gladius, serrula with interspersed multiple tooth rows, and a tarsal organ with strongly projected margins. Roddenberryus shares with Tarsonops Chamberlin the cracked tarsi and metatarsi, with multiple adesmatic joints intertwined on the cuticle and an unusual internal respiratory system with both posterior tracheae fused in a single trunk.
A review of the Ptocasius Simon, 1885 spiders of Gaoligong Mountains, China (Araneae: Salticidae)
(2023)
Sixteen new species of the genus Ptocasius are described from Mt. Gaoligong, Yunnan: P. angulatus sp. nov. (♀); P. circulus sp. nov. (♀); P. danzhu sp. nov. (♂♀); P. davidi sp. nov. (♀); P. filiformus sp. nov. (♂♀); P. foliolatus sp. nov. (♀); P. geminus sp. nov. (♂♀); P. jietouensis sp. nov. (♂♀); P. longapophysis sp. nov. (♂♀); P. longlingensis sp. nov. (♂♀); P. rectangulus sp. nov. (♀); P. robustus sp. nov. (♀); P. tengchongensis sp. nov. (♂♀); P. umbellulatus sp. nov. (♀); P. zabkai sp. nov. (♂♀) and P. zonatus sp. nov. (♀). Including P. montanus (Żabka, 1981) and P. pseudoflexus (Liu, Yang & Peng, 2016), a total of eighteen species of Ptocasius have been reported from Mt. Gaoligong. For each new species, a morphological description, photos of the body and copulatory organs, line drawings of copulatory organs, and locality maps are provided.
Revision of the genus Sulciclivina Balkenohl, 2022 from Asia (Coleoptera, Carabidae, Clivinini)
(2023)
The Oriental genus Sulciclivina is revised based on 770 specimens. Sulciclivina attenuata attenuata (Herbst, 1806), S. bhamoensis (Bates, 1892), S. striata striata (Putzeys, 1846), S. sulcigera (Putzeys, 1866), and S. sagittaria sagittaria (Bates, 1892) are redescribed. In order to maintain stability of the nomenclature, lectotypes have been designated for S. attenuata attenuata, S. bhamoensis, S. striata striata, and S. sagittaria sagittaria. The following twelve new taxa are described: S. attenuata semireticulata subsp. nov., S. striata kottea subsp. nov., S. coxisetosa sp. nov., S. basiangusta sp. nov., S. splendida sp. nov., S. mikirensis sp. nov., S. karelkulti karelkulti sp. nov., S. karelkulti medanensis subsp. nov., S. curvata sp. nov., S. oculiangusta sp. nov., S. andrewesi sp. nov., and S. sagittaria singaporensis subsp. nov. An identification key to the species is provided which includes the characterization of the two new species groups attenuata and sagittaria. All taxa are figured including male and female genitalia, if available. The available faunistic information is provided, and distribution records are displayed on a map.
Fourteen new species of the Colletes fasciatus species group are described, all of them endemic to the winter rainfall area in South Africa: C. ascopalis sp. nov. ♀, C. carolinae sp. nov. ♀♂, C. cedarbergensis sp. nov. ♀, C. fabiani sp. nov. ♀♂, C. fuscitergus sp. nov. ♂, C. khoisanorum sp. nov. ♀, C. kogelbergensis sp. nov. ♀♂, C. littoralis sp. nov. ♀, C. longitarsus sp. nov. ♂, C. peerboomi sp. nov. ♀, C. richtersveldensis sp. nov. ♀, C. ruschia sp. nov. ♀♂, C. spinipes sp. nov. ♂, C. troetroeensis sp. nov. ♀. Two species are synonymized based on newly recognized sex associations: C. katharinae Kuhlmann, 2007 syn. nov. is synonymized with C. infracognitus Cockerell, 1937 and C. bokkeveldi Kuhlmann, 2007 syn. nov. with C. zygophyllum Kuhlmann, 2007. The previously unknown female of C. inornatus Cockerell, 1946 is described for the first time and new records of already described species are added. All of the currently known 37 species of the C. fasciatus-group are imaged and included in a key to facilitate their identification.
The selective autophagy of mitochondria is linked to mitochondrial quality control and is critical to a healthy organism. Ubiquitylation is sometimes needed for marking damaged mitochondria for disposal but also for governing the expression and turnover of critical regulatory proteins. We have conducted a CRISPR/Cas9 screen of human E3 ubiquitin ligases for influence on mitophagy under both basal cell culture conditions and following acute mitochondrial depolarisation. We identify two Cullin RING ligases, VHL and FBXL4 as the most profound negative regulators of basal mitophagy. Here we show that these converge through control of the mitophagy adaptors BNIP3 and BNIP3L/NIX, but that this is achieved through different mechanisms. FBXL4 suppression of BNIP3 and NIX levels is mediated via direct interaction and protein destabilisation rather than suppression of HIF1α-mediated transcription. Depletion of NIX but not BNIP3 is sufficient to restore mitophagy levels. Our study enables a full understanding of the aetiology of early onset mitochondrial encephalomyopathy that is supported by analysis of a disease associated mutation. We further show that the compound MLN4924, which globally interferes with Cullin RING ligase activity, is a strong inducer of mitophagy which can provide a research tool in this context as well as a candidate therapeutic agent for conditions linked to mitochondrial quality control.
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The ant genus Vollenhovia Mayr, 1865 (Myrmicinae, Crematogastrini) mostly occurs in the Australasian and Oriental regions. We revised its diversity in India and Sri Lanka based on qualitative and quantitative morphology, recognizing eleven taxa, including a new species which is described herewith: V. escherichi Forel, 1911, V. gastropunctata Bharti & Kumar, 2013, V. karimalaensis Dhadwal et al., 2023, V. keralensis Kripakaran & Sadasivan, 2022, V. mawrapensis Dhadwal et al., 2023, V. oblonga laevithorax Emery, 1889, V. penetrans (Smith, 1857), V. pfeifferi Bharti et al., 2023, V. taylori Rilta et al., 2023, V. terayamai Rilta et al., 2023, and V. yasmeenae sp. nov. The subspecies status of V. oblonga laevithorax and its relationship with V. penetrans, whose type series does not contain workers, still requires to be assessed in the context of a broader revision including the whole Oriental region. The known distribution of the genus in the Indian subcontinent appears to be fragmentary, still requiring extensive sampling efforts. Four species are from the Western Ghats biodiversity hotspot in the southern Indian state of Kerala, one is endemic to the biogeographically related Sri Lanka, three are known from Eastern India near the border with Bangladesh, two are reported from the Andaman and Nicobar Islands, and one is restricted to the Himachal Pradesh in northern India. A comprehensive key of the known Vollenhovia species from India and Sri Lanka is provided.
The taxonomy of the Neotropical Carcharodini genus Viuria Grishin, 2019 (Lepidoptera: Hesperiidae: Pyrginae) is presented. Two new species are described: Viuria inanna sp. nov. from south-southeastern habitats Brazil and Paraguay, and Viuria acadia sp. nov. from Brazil and Ecuador. Illustrations of adults, including morphology of secondary sexual organs in males, male and female genitalia, diagnoses, remarks, and updated geographical distributions are also provided for all species.
In QCD at large enough isospin chemical potential Bose-Einstein Condensation (BEC) takes place, separated from the normal phase by a phase transition. From previous studies the location of the BEC line at the physical point is known. In the chiral limit the condensation happens already at infinitesimally small isospin chemical potential for zero temperature according to chiral perturbation theory. The thermal chiral transition at zero density might then be affected, depending on the shape of the BEC boundary, by its proximity. As a first step towards the chiral limit, we perform simulations of 2+1 flavors QCD at half the physical quark masses. The position of the BEC transition is then extracted and compared with the results at physical masses.
Lacewing larvae in the Cretaceous were more diverse in appearance than they are today, best documented by numerous fossils preserved in amber. One morphotype of an unusual larva from about 100 Ma old Kachin amber (Myanmar) was formally recognised as a distinct group called Ankyloleon. The original description erected a single formal species, Ankyloleon caudatus. Yet, it was indicated that among the five original specimens, more species were represented. We here report five new specimens. Among these is the so far largest as well as the so far smallest specimen. Based on this expanded material we can estimate certain aspects of the ontogenetic sequence and are able to recognise a second discrete species, Ankyloleon caroluspetrus sp. nov. We discuss aspects of the biology of Ankyloleon based on newly observed details such as serrations on the mandibles. Long and slender mouthparts, legs and body together with a weakly expressed outer trunk segmentation provide indications for a lifestyle hunting for prey in more confined spaces. Still many aspects of the biology of these larvae must remain unclear due to a lack of a well comparable modern counterpart, emphasising how different the fauna of the Cretaceous was.
We simultaneously considered morphology and molecular phylogeny to modify the generic classification of the ‘pyropterine clade’ (Lycidae, Erotinae, Dictyopterini). To place species previously included in Benibotarus Kôno, 1932 in reciprocally monophyletic genera, we propose Gomezzuritus gen. nov. with the type-species Dictyopterus alternatus Fairmaire, 1856. Further, we transfer Gomezzuritus alternatus (Fairmaire, 1856) comb. nov., G. longicornis (Reiche, 1878) comb. nov., and G. rubripes (Pic, 1897) comb. nov. from Benibotarus to Gomezzuritus gen. nov. The pyropterine clade contains five genera in the Palaearctic region: Pyropterus Mulsant, 1838, Gomezzuritus gen. nov., Helcophorus Fairmaire, 1891, Greenarus Kazantsev, 1995, and Benibotarus Kôno, 1932. The arrangement of longitudinal elytral costae proved misleading for consideration of relationships. Two genera in distant positions share only four primary costae (Pyropterus and Helcophorus), and three similarly distant genera share the shortened primary costa 3, resulting in three primary and four secondary longitudinal costae (Gomezzuritus, Greenarus, and Benibotarus). The larva of Gomezzuritus alternatus is described in detail, and it is compared with the larvae of other Dictyopterini, including the presumed larva of G. longicornis.
The interactions between the lacewing Ceraeochrysa claveri (Navás) (Neuroptera: Chrysopidae) larva and the coconut mealybug Nipaecoccus nipae (Maskell) (Hemiptera: Pseudococcidae) were recorded. The third-instar lacewing larva constructed a dorsal packet using mealybug wax from both male pupal cases and the bodies of adult females. Surprisingly, live nymphs were also frequently placed into the dorsal packet. Prey mealybugs were discarded and not incorporated into the packet after consumption. When disturbed, adult female mealybugs reflex bled from their dorsal ostioles, contacting the mouthparts of the lacewing. The lacewing quickly retreated to clean the mouthparts on the substrate, providing further evidence that ostiolar fluids act as a defense mechanism for mealybugs. Despite repeatedly contacting the ostiolar fluid, the lacewing pupated and eclosed successfully. Macro video footage of dorsal packet construction and ostiolar reflex bleeding is included. This is the first report of C. claveri preying on N. nipae, the first evidence of C. claveri using mealybug wax to construct the dorsal packet, and the first account of reflex bleeding via the dorsal ostioles to deter predators in N. nipae.
ZooBank registration. urn:lsid:zoobank.org:pub:CCEE7B47-B6E9-4D36-8860-A7F4DE5E717B
Cyclocephala kuijteni (Scarabaeidae: Dynastinae: Cyclocephalini), a new species from Suriname
(2023)
Cyclocephala kuijteni, new species (Scarabaeidae: Dynastinae: Cyclocephalini), is described from Suriname. It is illustrated together with its aedeagus, and the characteristics differentiating it from the most similar species C. castanea (Olivier), C. hardyi Endrödi and C. pygidialis Joly are briefly discussed.
ZooBank registration. urn:lsid:zoobank.org:pub:8F673BD6-7061-4B9E-9445-F8A5C21D5892
Complexome profiling (CP) is a powerful tool for systematic investigation of protein interactors that has been primarily applied to study the composition and dynamics of mitochondrial protein complexes. Here, we further optimised this method to extend its application to survey mitochondrial DNA- and RNA-interacting protein complexes. We established that high-resolution clear native gel electrophoresis (hrCNE) is a better alternative to preserve DNA- and RNA-protein interactions that are otherwise disrupted when samples are separated by the widely used blue native gel electrophoresis (BNE). In combination with enzymatic digestion of DNA, our CP approach improved the identification of a wide range of protein interactors of the mitochondrial gene expression system without compromising the detection of other multi-protein complexes. The utility of this approach was particularly demonstrated by analysing the complexome changes in human mitochondria with impaired gene expression after transient, chemically-induced mtDNA depletion. Effects of RNase on mitochondrial protein complexes were also evaluated and discussed. Overall, our adaptations significantly improved the identification of mitochondrial DNA- and RNA-protein interactions by CP, thereby unlocking the comprehensive analysis of a near-complete mitochondrial complexome in a single experiment.
The blind centipede genus Scolopocryptops Newport, 1844 comprises two lineages: the “Asian/North American” group and the “Neotropical/Afrotropical” group. The former can be further split into two groups, a clade comprising Scolopocryptops elegans (Takakuwa, 1937) and Scolopocryptops curtus (Takakuwa, 1939), and a clade comprising all other “Asian/North American” species. Here, Scolopocryptops miyosii sp. nov. from Kyushu and Amami Island and Scolopocryptops brevisulcatus sp. nov. from Izena Island and Okinawa Island in southern Japan are described. The two new species have external features similar to S. elegans and S. curtus. They can be distinguished from most other “Asian/North American” Scolopocryptops by the absence of complete sulcus/sulci along the lateral margin of the cephalic plate and the presence of sternal longitudinal sulci. They can be distinguished from each other by several external features, such as the density of antennal setae and the shape of the anterior margin of the coxosternite. Phylogenetic analyses using nuclear and mitochondrial markers also support the monophyly of the four species, which form a clade sister to all other “Asian/North American” Scolopocryptops.
Costanana DeLong & Freytag, 1972 is a Neotropical genus of leafhoppers currently comprising 13 species with a wide distribution from Mexico to Argentina. In this study, eight new species of Costanana are described, C. xenomorpha sp. nov. from Department of Cuzco, Peru, and seven Brazilian species: C. alata sp. nov. from Minas Gerais State; C. bifida sp. nov. from Paraná and Mato Grosso states; C. cifi sp. nov., C. obtusa sp. nov. and C. piraquarensis from Paraná State; C. luzi sp. nov. from Distrito Federal; and C. rubromarginata sp. nov. from Mato Grosso and Pará states. We propose that Costanana cella DeLong & Freytag, 1972 is a junior synonym of C. praecellens (Stål, 1862) and C. asymmetrica DeLong & Freytag, 1972 is a junior synonym of Gypona viridans DeLong & Martinson, 1972. Costanana costata DeLong & Freytag, 1972 and C. flavicosta (Stål, 1862) are transferred to Gypona Germar, 1821, C. minuta (Spångberg, 1878) is transferred to Acuponana DeLong & Freytag, 1970 and Gypona nupera Van Duzee, 1907 is transferred to Costanana. Gypona costata comb. nov. and Costanana santana DeLong & Wolda, 1983 are newly recorded from Pernambuco State, and Gypona flavicosta comb. nov. is recorded from Espírito Santo and Paraná states, Brazil. The female genitalia of Costanana flavina DeLong & Freytag, 1972, C. praecellens and Gypona flavicosta comb. nov. are described and illustrated for the first time and a brief note on feeding behavior is given for C. flavina and C. praecellens. A key to males and a new diagnosis are provided for Costanana. We also describe and illustrate Metacostana cornuta gen. et sp. nov., a new Brazilian genus for Gyponini sharing characteristics with Costanana, Acuthana Domahovski & Cavichioli, 2018, Domahovana Silva et al., 2022 and Dumorpha DeLong & Freytag, 1975.
A new species of Strepsiptera of the genus Paraxenos Saunders, 1872 (Xenidae) from the United Arab Emirates is described. It was recorded from the host species Bembix kohli Morice, 1897 and represents the first occurrence of Paraxenos from Bembix Fabricius, 1775 in the Afrotropical region. A detailed redescription of the female cephalothorax of Paraxenos hungaricus (Székessy, 1955) is provided, together with the first description of the male cephalotheca. The holotype of Paraxenos krombeini Kifune & Hirashima, 1987 was redescribed. Additionally, a key for parasites of Bembix among Paraxenos species is provided based on characters of the female cephalothorax and male cephalotheca. The distribution and conservation status of Paraxenos spp. on Bembix are also discussed.
The lianescent genus Tinospora Miers in Singapore is revised. Four species are recognised, two of which are newly described. Tinospora krispura I.M.Turner sp. nov. is known from Christmas Island and Singapore. Tinospora singapura I.M.Turner sp. nov. is known only from Singapore. Two new lectotypifications are included, one at the second step.
Aname L. Koch, 1873 is an incredibly diverse genus of mygalomorph spiders endemic to Australia, occurring from coast to coast in tropical, semi-arid and arid bioregions. They are relatively gracile mygalomorph spiders that build open burrows, sometimes with a secondary entrance that functions as an escape chute. The genus currently contains 48 species, but the true diversity is likely to be closer to 200 species. Here we describe five new species (A. ningaloo sp. nov., A. salina sp. nov., A. tatarnici sp. nov., A. tenuipes sp. nov. and A. wongalara sp. nov.), primarily based on specimens collected on Bush Blitz expeditions in Western Australia (Cape Range, 2019), South Australia (Great Victoria Desert, 2017) and the Northern Territory (Wongalara, 2012). We complement these descriptions with a molecular phylogenetic analysis to place all new species into an existing phylogenetic framework.
Highlights
• New fumarole and thermal water data for Askja and Kverkfjöll volcanoes, Iceland.
• Data compared to modelled compositions and fluxes of magmatic gas.
• Fumarole compositions compatible with origin of CO2 and S from degassing intrusions.
• Intrusive magmatic fluxes sufficient to sustain hydrothermal fluxes of CO2 and S in Iceland
• Magma degassing insignificant/minor source of H2O and Cl to Icelandic hydrothermal fluids
Abstract
Mantle volatiles are transported to Earth's crust and surface by basaltic volcanism. During subaerial eruptions, vast amounts of carbon, sulfur and halogens can be released to the atmosphere during a short time-interval, with impacts ranging in scale from the local environment to the global climate. By contrast, passive volatile release at the surface originating from magmatic intrusions is characterized by much lower flux, yet may outsize eruptive volatile quantities over long timescales. Volcanic hydrothermal systems (VHSs) act as conduits for such volatile release from degassing intrusions and can be used to gauge the contribution of intrusive magmatism to global volatile cycles. Here, we present new compositional and isotopic (δD and δ18O-H2O, 3He/4He, δ13C-CO2, Δ33S-δ34S-H2S and SO4) data for thermal waters and fumarole gases from the Askja and Kverkfjöll volcanoes in central Iceland. We use the data together with magma degassing modelling and mass balance calculations to constrain the sources of volatiles in VHSs and to assess the role of intrusive magmatism to the volcanic volatile emission budgets in Iceland.
The CO2/ΣS (10−30), 3He/4He (8.3–10.5 RA; 3He/4He relative to air), δ13C-CO2 (−4.1 to −0.2 ‰) and Δ33S-δ34S-H2S (−0.031 to 0.003 ‰ and −1.5 to +3.6‰) values in high-gas flux fumaroles (CO2 > 10 mmol/mol) are consistent with an intrusive magmatic origin for CO2 and S at Askja and Kverkfjöll. We demonstrate that deep (0.5–5 kbar, equivalent to ∼2–18 km crustal depth) decompression degassing of basaltic intrusions in Iceland results in CO2 and S fluxes of 330–5060 and 6–210 kt/yr, respectively, which is sufficient to account for the estimated CO2 flux of Icelandic VHSs (3365–6730 kt/yr), but not the VHS S flux (220–440 kt/yr). Secondary, crystallization-driven degassing from maturing intrusions and leaching of crustal rocks are suggested as additional sources of S. Only a minor proportion of the mantle flux of Cl is channeled via VHSs whereas the H2O flux remains poorly constrained, because magmatic signals in Icelandic VHSs are masked by a dominant shallow groundwater component of meteoric water origin. These results suggest that the bulk of the mantle CO2 and S flux to the atmosphere in Iceland is supplied by intrusive, not eruptive magmatism, and is largely vented via hydrothermal fields.
Highlights
• We show the first observations of seismo-acoustic tremor at Oldoinyo Lengai, the world's only active carbonatite volcano.
• We observe significant changes in seismic and acoustic tremor properties and their correlation in one year of data collection.
• Using satellite-based thermal data, we identify different volcanic processes (degassing, lava pond dynamics and spattering).
Abstract
We analyze volcanic tremor from Oldoinyo Lengai, Tanzania, which is currently the only active volcano on Earth producing carbonatitic lavas. Here, we use data from the recent SEISVOL deployment and focus on a co-located seismic and infrasound station about 200 m below the summit. We show the very first observations of seismo-acoustic tremor caused by carbonatitic eruptions. This seismo-acoustic tremor is highly variable throughout the ∼one year of data which we characterize by analyzing its seismic amplitude, duration, recurrence, dominant seismic frequency and harmonics. Frequency gliding occurs frequently and over short (minutes to hours) to long time scales (hours to days) and likely reflects different time-dependent mechanisms, such as evenly-spaced repeating events with a change in inter-event times, crater dynamics that alter resonators, and dike intrusions. Seismic and acoustic wavefields correlate well for stronger eruptive sequences but are only partially coherent which suggests that high-frequency seismic tremor (up to 25 Hz) may be caused by the low viscosity of the carbonatitic melt and not by ground-coupled airwaves. In addition, the comparison between seismic-acoustic and satellite InfraRed thermal data allows us to infer different volcanic activity styles which partially alternate throughout the year: intrusive activity and the construction of hornitos, degassing, activity from a lava pond, and varying styles of extrusive activity, in particular spattering. Our study provides important insights into the eruption dynamics of this peculiar volcano which suggests shallow melt storage within the crater floor.
Molecular mechanisms of inorganic-phosphate release from the core and barbed end of actin filaments
(2023)
The release of inorganic phosphate (Pi) from actin filaments constitutes a key step in their regulated turnover, which is fundamental to many cellular functions. However, the molecular mechanisms underlying Pi release from both the core and barbed end of actin filaments remain unclear. Here, we combine cryo-EM with molecular dynamics simulations and in vitro reconstitution to demonstrate how actin releases Pi through a ‘molecular backdoor’. While constantly open at the barbed end, the backdoor is predominantly closed in filament-core subunits and only opens transiently through concerted backbone movements and rotameric rearrangements of residues close to the nucleotide binding pocket. This mechanism explains why Pi escapes rapidly from the filament end and yet slowly from internal actin subunits. In an actin variant associated with nemaline myopathy, the backdoor is predominantly open in filament-core subunits, resulting in greatly accelerated Pi release after polymerization and filaments with drastically shortened ADP-Pi caps. This demonstrates that the Pi release rate from F-actin is controlled by steric hindrance through the backdoor rather than by the disruption of the ionic bond between Pi and Mg2+ at the nucleotide-binding site. Our results provide the molecular basis for Pi release from actin and exemplify how a single, disease-linked point mutation distorts the nucleotide state distribution and atomic structure of the actin filament.
Scelolabes, historically is a monotypic genus of Ocydromiinae (Hybotidae) that for a long time was not studied due to the absence of the type of the type species (Scelolabes bivittatus Philippi), which is probably lost or destroyed. In this context, we propose an updated diagnosis and redescription of the genus, based on specimens identified by experts and in agreement with the original description of Philippi (1865), as well as illustrating male and female terminalia for the first time. This serves as an aid to discuss and corroborate the status of Scelolabes in the Neotropical region as a genus distinct from Hoplopeza. In addition, two new species are described, and an identification key and a distribution map are provided to all the Neotropical species of the genus.
The southern South American genus Guaranita includes tiny spiders (body length ~1 mm) that lead reclusive lives under ground-objects and run rapidly when disturbed. As a result, they have been poorly collected and studied. Here we report on a recent collection of Guaranita spiders from Argentina, describing one new species (G. auadae Huber sp. nov.) and the previously unknown female of G. dobby Torres et al., 2016. In addition, we provide CO1 barcodes for all (now five) known species, first SEM data, and first chromosome data for the genus. The diploid number of Guaranita goloboffi Huber, 2000 (2n♂ = 11) is among the lowest in araneomorph spiders with monocentric chromosome structure.
Serratichneumon Riedel & Sheng gen. nov. and Serratichneumon maculatus Sheng & Riedel gen. et sp. nov. belonging to the tribe Ichneumonini of subfamily Ichneumoninae (Hymenoptera: Ichneumonidae), collected in the Oriental Region (China, Vietnam, and Indonesia), are described and illustrated. The new genus is placed in Tereshkin’s key to the Palaearctic genera of the subtribe Amblytelina, and compared with similar genera, Hepiopelmus Wesmael, 1845, and Tricholabus Thomson, 1894.
Seven new species of very small Gulella Pfeiffer, 1856 are described from two regions in the interior of south-eastern South Africa within the Maputaland-Pondoland-Albany biodiversity hotspot. In addition, the status of Gulella darglensis benthodon van Bruggen, 1980 is revised and raised to species level. All species are very small-shelled and are narrow-range endemics. Six species, G. judithmastersae sp. nov., G. kevincolei sp. nov., G. hlathikhulu sp. nov., G. nkandla sp. nov., G. mystica sp. nov. and G. libertas sp. nov. are each known from only one locality. The first two as well as G. benthodon and G. mcmasteri sp. nov. are found only in the Amathole Mountains, where poaching, illegal harvesting of plant products and uncontrolled access of cattle take place, including in protected areas. The other four species each occur at one locality in north-central KwaZulu-Natal. The localities of three of the last-mentioned species are in protected areas although they are isolated and surrounded by a heavily transformed cultural landscape rendering enforcement of conservation legislation a challenge. Six species occur in nature reserves, highlighting the importance of small pockets of protected habitat for the conservation of terrestrial snails.
A new species of brittle star was collected in 2021 by the manned submersible “Fendouzhe” from the central rift zone deep waters, Philippine Sea, at a depth of 7729 m. It is described as Ophiuroglypha fendouzhe sp. nov., and is distinguished from its congeners based on the following features: slender arms, separated dorsal and ventral arm plates, overlapping large disc scales, and distally contiguous radial shields. We provide comprehensive descriptions of the external morphological features, including characteristics of the arm skeleton, and a phylogenetic analysis based on COI sequences. The interspecific genetic distance variation in the genus Ophiuroglypha found in this study was 3.89% to 24.25%. The new species constitutes the deepest known record for the genus Ophiuroglypha.
New state records for 33 species of Leiodidae (Coleoptera) are reported from Ohio, with the majority of records from one locality in the southeastern portion of the state. This doubles the known members of
the family in Ohio to 66 species in 20 genera.
ZooBank registration. urn:lsid:zoobank.org:pub:DF3542D6-680B-4F0F-9D93-A30529720879
The taxonomy of Loboscelidiinae in Vietnam is revised, with 16 new species being described: Loboscelidia bachmaensis sp. nov., L. barbata sp. nov., L. cilia sp. nov., L. convexa sp. nov., L. cucphuongensis sp. nov., L. cuneata sp. nov., L. do sp. nov., L. flavipes sp. nov., L. glabra sp. nov., L. komedai sp. nov., L. mediata sp. nov., L. parallela sp. nov., L. piriformis sp. nov., L. squamosa sp. nov., L. vang sp. nov. and L. vietnamensis sp. nov. In total, 24 species of Loboscelidia are recognized in the fauna of Vietnam. Keys to Indo-Chinese male and world female of Loboscelidia are provided. A brief observation of the foraging behavior of L. squamosa sp. nov. is also reported. Host-carriage and subsequent host egg burying are considered primary nesting behaviors of solitary wasps.
We present a preliminary discussion about cauliflory, sexual dimorphism and biogeographic patterns in Drypetes Vahl (Putranjivaceae Endl.), focused on Africa. We also present a taxonomic treatment for two new species of cauliflorous trees of this genus from the rainforests of western Central Africa, one endemic to Gabon and known from six gatherings, D. aphanes Quintanar, D.J.Harris & Barberá sp. nov., and the other distributed in Gabon and the Republic of the Congo, D. cauta D.J.Harris, Barberá & Quintanar sp. nov., also known from another six gatherings. They are presented along with D. gabonensis Pierre ex Hutch., known from 25 gatherings made throughout western Central Africa, a species with markedly dimorphic flowers between sexes compared to the rest of the species in the genus. Specimens of these two new species have been confused with D. gabonensis due to some morphological resemblances. This treatment includes the detailed descriptions of these three species, the typification of their names, a comparative table summarizing their main morphological differences, an identification key, an illustration and information about their habitat and distribution. A provisional IUCN Red List assessment shows that D. gabonensis and D. cauta sp. nov. are ‘Vulnerable’ species, and D. aphanes sp. nov. is ‘Endangered’. After the publication of these new species, Drypetes consists of 86 species in continental Africa and the Malagasy Region and 219 species for the whole world.
Chemical pollution caused by synthetic organic chemicals at low concentrations in the environment poses a growing threat to the ecological status of aquatic ecosystems. These chemicals are regularly released into surface waters through both treated and untreated effluents from wastewater treatment plants (WWTPs), agricultural runoff, and industrial discharges. Consequently, they accumulate in surface waters, distribute amongst environmental compartments according to their physicochemical properties, and cause adverse effects on aquatic organisms. Unfortunately, there is a lack of data regarding the occurrence of synthetic organic chemicals, henceforth micropollutants, in South American freshwater ecosystems, especially in Chile.
To address this research gap, we present a comprehensive dataset comprising concentrations of 153 emerging chemicals, including pesticides, pharmaceutical and personal care products (PPCPs), surfactants, and industrial chemicals. These chemicals were found to co-occur in surface waters within Central Chile, specifically in the River Aconcagua Basin. Our sampling strategy involved collecting surface water samples from streams and rivers with diverse land uses, such as agriculture, urban areas, and natural reserves. For sample extraction, we employed an on-site large-volume solid phase extraction (LVSPE) device. The resulting environmental extracts were then subjected to wide-scope chemical target screening using gas chromatography and liquid chromatography high-resolution mass spectrometry (GC- and LCsingle bondHRMS).
The dataset we present holds significant value in assessing the chemical status of water bodies. It enables comparative analysis of pollution fingerprints associated with emerging chemicals across different freshwater systems. Moreover, the data can be reused for environmental risk assessment studies. Its utilisation will contribute to a better understanding of the impact and extent of chemical pollution in aquatic ecosystems, facilitating the development of effective mitigation strategies.
Samples of Crustacea and Annelida (Polychaeta, Sipuncula, and Hirudinea) were collected in the Bering Sea and the northwestern Pacific Ocean during scientific cruise SO-249 BERING in 2016. Biological samples were collected from 32 locations by the team on-board RV Sonne using a chain bag dredge at depths ranging between 330–5,070 m, and preserved in 96% ethanol. Specimens were morphologically identified to the lowest taxonomic level possible using a Leica M60 stereomicroscope. The generated data here comprise taxonomic information as well as annotated bathymetric and biogeographic information from a total of 78 samples (26 Crustacea, 47 Polychaeta, 4 Sipuncula, and 1 Hirudinea). The dataset was prepared following Darwin Core Biodiversity standards for FAIR data sharing based on Ocean Biodiversity Information System (OBIS) and Global Biodiversity Facility (GBIF) guidelines. The standardised digitised data were then mobilised to both OBIS and GBIF under CC BY 4.0 licence to publicly share and adopt the data. As records of these important marine taxa from bathyal and abyssal depths are sparse, especially from the deep Bering Sea, the herein generated and digitised data aid in filling existing knowledge gaps on their diversity and distribution in that region. As part of the “Biogeography of the NW Pacific deep-sea fauna and their possible future invasions into the Arctic Ocean” (BENEFICIAL) project, this dataset thus not only increases our knowledge in re-assessing and uncovering the deep-sea diversity of these taxa, but also serves policy and management sectors by providing first-hand data for global report assessments.
Purpose: Monocentric, prospective study to investigate whether concomitant support of cochlear implant (CI) patients by CI-trained otolaryngologists and application of a standardized head bandage can minimize potential complications during magnetic resonance imaging (MRI).
Methods: Thirty-seven patients with 46 CIs underwent MRI with a prophylactic head bandage. All participants and the otolaryngologist at the CI center completed pre- and post-MRI questionnaires documenting body region scanned, duration of MRI and bandage wear, field strength during the scan, and any complications. If pain was experienced, it was assessed using a visual analog scale (1–10).
Results: MRI was performed without adverse events in 37.8% of cases. Magnet dislocation requiring surgical revision occurred in 2% of cases. Pain was reported in 86% of cases, often due to the tightness of the dressing. Patients with rotating, MRI-compatible magnets reported significantly less pain than participants with older-generation implants. In 11% of cases, the MRI was discontinued.
Conclusion: Serious complications during MRI in cochlear implant patients are rare. Pain is the most common adverse event, probably mainly due to the tight bandage required by most implant types. With newer generations of magnets, these patients experience less pain, no dislocation of the magnets, and no need for bandaging. Although magnet dislocation cannot be completely prevented in older generations of implants, it appears to be reduced by good patient management, which recommends examination under the guidance of physicians trained in the use of hearing implants.
Bilateral simultaneous cochlear implantation is a safe method of hearing rehabilitation in adults
(2023)
Purpose: Bilateral cochlear implantation is an effective treatment for patients with bilateral profound hearing loss. In contrast to children, adults mostly choose a sequential surgery. This study addresses whether simultaneous bilateral CI is associated with higher rates of complications compared to sequential implantation.
Methods: 169 bilateral CI surgeries were analyzed retrospectively. 34 of the patients were implanted simultaneously (group 1), whereas 135 patients were implanted sequentially (group 2). The duration of surgery, the incidence of minor and major complications and the duration of hospitalization of both groups were compared.
Results: In group 1, the total operating room time was significantly shorter. The incidences of minor and major surgical complications showed no statistically significant differences. A fatal non-surgical complication in group 1 was particularly extensively reappraised without evidence of a causal relationship to the chosen mode of care. The duration of hospitalization was 0.7 days longer than in unilateral implantation but 2.8 days shorter than the combined two hospital stays in group 2.
Conclusion: In the synopsis of all considered complications and complication-relevant factors, equivalence of simultaneous and sequential cochlear implantation in adults in terms of safety was found. However, potential side effects related to longer surgical time in simultaneous surgery must be considered individually. Careful patient selection with special consideration to existing comorbidities and preoperative anesthesiologic evaluation is essential.