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Despite a legal framework being in place for several years, the market share of qualified electronic signatures is disappointingly low. Mobile Signatures provide a new and promising opportunity for the deployment of an infrastructure for qualified electronic signatures. We that SIM-based signatures are the most secure and convenient solution. However, using the SIM-card as a secure signature creation device (SSCD) raises new challenges, because it would contain the user’s private key as well as the subscriber identification. Combining both functions in one card raises the question who will have the control over the keys and certificates. We propose a protocol called Certification on Demand (COD) that separates certification services from subscriber identification information and allows consumers to choose their appropriate certification services and service providers based on their needs. This infrastructure could be used to enable secure mobile brokerage services that can ommit the necessity of TAN lists and therefore allow a better integration of information and transaction services.
The present work wishes to contribute with information on two members of the primary active transporter group, which differ both in structure and function: Wilson Disease Protein which uses the energy released by ATP hydrolysis to transport copper across cell membranes, and Proteorhodopsin, which uses the energy of light to build up a proton gradient across the bacterial cell membrane, both heterologously expressed in Xenopus laevis oocytes. The surface detection experiments using HA-tagged WNDP confirm the proposed topology of WNDP. The HA-tag per se does not interfere with the function of WNDP, as shown for WNDP HA56 by ATP-dependent phosphorylation after expression in Sf9 cells. Sequence modifications within the WNDP HA56 template-construct reveal some interesting features: i) the N-terminal domain, which contains the 6 metal binding sites, is not necessary for plasma membrane targeting; ii) elevated surface expression of WNDP was observed when the carboxy terminus containing the tri-Leu motif is missing, which suggests that this motif might be involved in the retrieval of the protein from the plasma membrane; iii) the mutations TGE>AAA (proposed to lock the protein in the E1 conformation and lead to constitutive plasma membrane localisation) and D1027A (phosphorylation deficient) did not interfere with the surface localisation of the protein; iv) the mutations CPC>SPS (copper transport deficient) and H1069Q (phosphorylation deficient, most common mutation in Wilson Disease) reduced plasma membrane expression to less then 50%. Western blot analysis shows that the overall expression level of all constructs is similar to that of the reference construct WNDP HA56. These findings suggest that motifs involved in copper binding and catalytic activity do not interfere with plasma membrane targeting of WNDP in Xenopus oocytes. However, the H1069Q mutation could interfere with the distribution of WNDP protein within the cells. In the case of Proteorhodopsin, data presented in this work support earlier observations according to which proteorhodopsin can operate as an outwardly and inwardly directed light-driven ion pump. The residues proposed to play the roles of proton donor (E108) and acceptor (D97) are important for proton translocation. In the absence of an anionic residue at position 97 no outward pumping takes place, but inward charge translocation may occurs under appropriate conditions. An M-like state similar to that known from BR detectably accumulates under neutral pH conditions or under conditions where reprotonation of the Schiff base from the cytoplasmic side is slowed down, as in case of the mutants at position 108. Under acidic conditions PR pumps inwardly under the concerted action of pH and transmembrane potential. The experiments performed in parallel with PR and BR wild-types brought not only interesting information about similarities and differences between the two retinylidene ion pumps, but also led to the observation that the life-time of the M state in BR wild-type can be extended in addition to hyperpolarising transmembrane potentials also by extracellular acidic pH, when the proton gradient through the cell membrane is directed opposite to the ion transport (i.e. when the electrochemical gradient opposing the direction of proton transport increases). Direct photocurrent measurements of HA-tagged PR and BR have shown that the inserted tag may interfere with the functionality of the protein. Next to E108 and D97 in PR other residues in the vicinity of the retinal binding pocket contribute to the translocation of protons, as exemplified by the mutant L105Q: additionally to changing the absorption maximum of the protein, this mutant is a less effective proton pump than the wild type. The example of PR suggests that transduction of light energy by – and reaction mechanisms of retinylidene ion pumps have not been entirely deciphered by the extensive studies of bacteriorhodopsin.
Studies in particular of the last decade showed that active neurogenesis continuously takes place in the subventricular zone (SVZ) of the lateral ventricles of the adult rodent brain. Neurogenesis in the SVZ leads to migration of neuroblasts within the rostral migratory stream (RMS) and mature neuron formation mainly in the olfactory bulb (OB). According to present understanding, glial cells with astrocytic properties represent the actual adult neural stem cells. The cell types representing the various cellular transition states leading to the formation of mature neurons as well as the mechanisms controlling adult neurogenesis and neuroblast migration are poorly understood. A previous study from this laboratory demonstrated that the ATP-hydrolyzing enzyme nucleoside triphosphate diphosphohydrolase 2 (NTPDase2) is associated with type B cells, the presumptive neural stem cells. NTPDase2 is a protein of the plasma membrane with its catalytic site facing the extracellular space. It hydrolyzes extracellular nucleoside triphosphates to their respective nucleoside diphosphates. This raises the possibility that the signaling pathway via extracellular nucleotides is involved in the control of adult neurogenesis. Neurons as well as glial cells express several subtypes of receptors (P2 receptors) that are responsive to the nucleotides ATP, ADP, UTP, or UDP. P2X receptors are ATP-gated Na+, K+ and Ca2+ permeable ion channels, P2Y receptors are coupled to trimeric G-proteins. In order to probe for a functional role of nucleotides in adult neurogenesis, the present study referred to an in vitro system (neurospheres). Neurospheres produced from isolates of the mouse SVZ and cultured in the presence of EGF and bFGF expressed the neural stem cell marker nestin and also GFAP, S100β, NTPDase2 and tissue non-specific alkaline phosphatase. Neurospheres generated from the cells of the subventricular zone were multipotenital. This was revealed by immunostaining of differentiated cells with markers for astrocytes, neurons and oligodendrocytes. The presence of ecto-nucleotidase was verified by analyzing the free phosphate released from nucleotides. The tissue non-specific form of alkaline phosphatase was the predominant enzyme. Both NTPDase2 and TNAP could be identified by immunocytochemistry and Western blotting. Hydrolysis was not observed for p-nitrophenyl thymidine monophosphate, a substrate of members of the ectonucleotide pyrophosphatase/phosphodiesterase family (NPP1 to NPP3). Since ecto-nucleotidases control the availability of extracellular nucleotide agonists, neurospheres were studied for the potential expression and functional role of nucleotide receptors. Neurospheres responded to extracellular nucleotides with a transient rise in Ca2+ (ATP = ADP > UTP). The rise in Ca2+ was due to P2Y receptors. The Ca2+ response was unaltered in the absence of extracellular Ca2+ and strongly reduced by thapsigargin, a blocker of internal Ca2+ stores. The P2Y1 antagonist MRS2179 strongly reduced the ATP- or ADP-induced increase in Ca2+, suggesting the involvement of a P2Y1 receptor. In addition, suramin and PPADS, non-selective antagonists for P2 receptors, inhibited most of the Ca2+ response. The agonistic activity of UTP and the lack of response to UDP implied the additional presence of a P2Y2 and/or a P2Y4 receptors and the absence of a functional P2Y6 receptor. RT-PCR experiments demonstrated that neurospheres expressed P2Y1 and P2Y2 receptors but not P2Y4 receptor. That the majority of the Ca2+ response to ATP was mediated via P2Y1 receptors was also confirmed by analysis of P2Y1 knockout mice and by application of the P2Y1 receptor-specific antagonist MRS2179. In addition, agonists of P2Y1 and P2Y2 receptors and low concentrations of adenosine augmented cell proliferation inspite of the presence of mitogenic growth factors. Neurosphere cell proliferation was attenuated after application of MRS2179 and in neurospheres from P2Y1 receptor knockout mice. These results infer a nucleotide receptor-mediated synergism that augments growth factor-mediated cell proliferation. Taken together these results suggest that P2Y-mediated nucleotidergic signalling is involved in neurosphere function and possibly also in adult neurogenesis in situ.
Active neurogenesis continuously takes place in the dentate gyrus of the adult mammalian brain. The dentate gyrus of the adult rodent hippocampus contains an astrocytelike cell population that is regarded as residual radial glia. These cells reside with their cell bodies in the subgranular layer (SGL). Radial processes traverse the granule cell layer (GCL) and form bushy ramifications in the inner molecular layer (IML). The residual radial glial cells apparently represent neuronal progenitor cells that can give rise to functionally integrated granule cells. To date the cellular and molecular events driving a subpopulation of these cells into neurogenesis as well as the cellular transition states are poorly understood. The present study shows, that in the mouse dentate gyrus, this cell type selectively expresses surfacelocated ATPhydrolyzing activity and is immunopositive for nucleoside triphosphate diphosphohydrolase 2 (NTPDase2). NTPDase2 is an ectoenzyme and hydrolyzes extracellular nucleoside triphosphates such as ATP or UTP to their respective nucleoside diphosphates. The enzyme becomes expressed in the hippocampus during late embryogenesis from E17 onwards, and is thus not involved in early brain development. Its embryonicpattern of expression mirrors dentate migration of neuroblasts and the formation of the primary and finally the tertiary dentate matrix. NTPDase2 is also expressed by a transient population of cortical radial glia from late embryonic development until postnatal day 5. NTPDase2 can be employed as a novel markerfor defining cellular transition states along the neurogenic pathway. It is associated with subpopulations of GFAP and nestinpositive cells. These intermediate filaments are typically expressed by the progenitor cells of the dentate gyrus. In addition there is a considerable overlap with doublecortinand PSANCAM positive cells. The expression of the microtubuleassociated protein doublecortin and of PSANCAM which are expressed by migrating neuroblasts is indicative of a transition of progenitors to a neural phenotype or an immature form of granule cell. NTPDase2 is no longer associated with young neurons and with maturegranule cells, as indicated by the lack of doubleimmunostaining for III tubulin and NeuN, respectively. Furthermore, β S100positive astrocytes do not express NTPDase2 validating that NTPDase2 is also not associated with later stages of gliogenesis. Experiments with the Sphase marker bromodeoxyuridine (BrdU) demonstrate that NTPDase2positive cell proliferate. Postmitotic BrdU-labeled cells preferentially acquire an NTPDase2positive phenotype. Many of these cells were also positive for GFAP. The contribution of BrdUlabeled cells positive for NTPDase2 increased with time from 2 h to 72 h, validating a strong association of NTPDase2 with proliferating cells of the dentate gyrus. The colocalization studies with various markers and the results of the experiments suggestthat NTPDase2 is associated with cell types of varying maturation states but not with mature neurons or astrocytes. Studies on the formation of neurospheres from the dentate gyrus validate previous data suggesting that the hippocampal progenitors have little capacity for self renewal in vitro. In situ hybridization results indicate the presence of one of the metabotropic purinergic receptor subtypes (the P2Y1 receptor) within the adult neurogenic regions, the dentate gyrus and the lateral walls of the lateral ventricles. A patchclamp analysis demonstrates the presence of functional ionotropic nucleotide receptor (P2X receptors) in progenitor cells expressing nestin promotordriven GFP. They suggest that the signaling pathway via extracellular nucleotides and nucleotide receptors may play a role in the control of adult hippocampal neurogenesis.
For this thesis photon and pi0 spectra in Gold-Gold-collisions at an energy of sqrt(s_NN) = 62 GeV were measured using the STAR-experiment at RHIC. Heavy ion collisions allow to study strongly interacting matter under extreme condiditons in the laborartory. Nuclear matter is strongly compressed and heated. Theories predict in a system of strongy interacting matter at high temperature and pressure a phase transition from hadronic matter, in which quarks are bound into hadrons, to a plasma of free quarks and gluons (QGP). To study the properties of this created medium, a number of different observables is available. One possibility to determine the temperature of such a system, is to measure the photon emission from the medium. The experimental difficulty is that there are more mechanisms producing photons than just the thermal production. Photons are produced in hard scattering processes or can be the result of the interaction of hard partons with the medium. According to theoretical calculations the photon yield from hard processes exceeds the thermal production for transverse momenta above 3 GeV/c. Photons from hard processes and thermal photons are referred to as direct photons, because they are produced inside of the medium. The largest part of the photons below pt=3GeV/c, however, comes from electromagnetic decays of hadrons in the final state of the collision. The largest fraction comes from the pi0- and the eta-mesons. Their contribution to the photon spectra can be determined by measuring the spectra of these decaying particles and calculating the resulting, corresponding photon spectra. The experimental difficulty is to measure these spectra to an accuracy of a few percent because the decay photons make up about 90% of all photons in the relevant phase space region. The STAR-experiment provides different detectors to measure photons and pi0-mesons. The primary detector for this kind of measurement are the electromagnetic calorimeters. However, the analysis described in this thesis uses the time projection chamber (TPC). Because photons don't carry electric charge and the TPC is only sensitive to charged particles, a conversion of the photon into an electron-positron-pair is required. This happens inside the electromagnetic fields of the nuclei and the electrons in the atomic shell of the detector material in the experimental setup of STAR. The resulting electron and positron tracks are measrued in the TPC. In chapter 3 the reconstruction of conversions from the measured tracks is described. Chapter 4 discusses the efficiency of the measurement, which is determined with a Monte-Carlo-Method, and the uncertainties of the correction. Chapter 5 presents the results of the analysis. The data set, on which the analysis is based, consists of Gold-Gold-Collisions an a center of mass energy of sqrt(s_NN)=62GeV. The selection criteria for individual events during data taking and during the analysis are explained. The data set is divided into four centrality selection classes. The first result are the transverse momentum and rapidity spectra of inclusive photons for all four centralities and the whole data set. Pi0-spectra versus transverse momentum for the four centralities and the whole data set are also shown. The pi0-spectra are compared to the spectra of pi0-mesons measured by the PHENIX-Collaboration at the same energy and with pi0-spectra measured by STAR at full RHIC energy. In addition a comparison to charged pi+- and pi--spectra is shown, which were also measured by the STAR collaboration. It is attempted to extract the fraction of direct photons by dividing the spectra of inclusive photons by the spectra of simulated decay photons. In these simulations pi0- and eta-spectra are modeled based on the pi+- and pi--spectra. Studying the uncertainties of this procedure shows that the size of the uncertainties is of the same magnitude as the signal of direct photons. Also the systematic uncertainties of the pi+- and pi--spectra are similar. Therefore the measurement of direct photon spectra is not possible. In chapter 6 possibilities are described to reduce the large systematic uncertainties. In addition it is discussed, what could be done with an already existing data set at full RHIC energy and how the addition of a dedicated converter during a future data taking period could reduce the systematic errors. The result of this thesis are inklusive photon and pi0 spectra. The systematic uncertainties were extensively studied. It is described, which enhancements are necessary to provide the perspective for measuring direct photons in the area of 1 to 3 GeV/c transverse momentum.
The substantia nigra is not the induction site in the brain of the neurodegenerative process that underlies Parkinson’s disease. Instead, the results of this semiquantitative study of 30 autopsy cases with incidental Lewy body pathology indicate that Parkinson’s disease in the brain commences with the formation of the very first immunoreactive Lewy neurites and Lewy bodies in noncatecholaminergic visceromotor neurons of the dorsal glossopharyngeusvagus complex, in projection neurons of the intermediate reticular zone, and in specific nerve cell types of the gain setting system (coeruleussubcoeruleus complex, caudal raphe nuclei, gigantocellular reticular nucleus), olfactory bulb, olfactory tract, and/or anterior olfactory nucleus in the absence of nigral involvement. The topographical parcellation of the nuclear grays described here is based upon known architectonic analyses of the human brain stem and takes into consideration the pigmentation properties of a few highly susceptible nerve cell types involved in Parkinson’s disease. In this sample and in all 58 ageand gendermatched controls, Lewy bodies and Lewy neurites do not occur in any of the known telencephalic Parkinson’s disease predilection sites (hippocampal formation, temporal mesocortex, proneocortical cingulate areas, amygdala, basal nucleus of Meynert, interstitial nucleus of the diagonal band of Broca, hypothalamic tuberomamillary nucleus).
Background The reciprocal (9;22) translocation fuses the bcr (breakpoint cluster region) gene on chromosome 22 to the abl (Abelson-leukemia-virus) gene on chromosome 9. Depending on the breakpoint on chromosome 22 (the Philadelphia chromosome – Ph+) the derivative 9+ encodes either the p40(ABL/BCR) fusion transcript, detectable in about 65% patients suffering from chronic myeloid leukemia, or the p96(ABL/BCR) fusion transcript, detectable in 100% of Ph+ acute lymphatic leukemia patients. The ABL/BCRs are N-terminally truncated BCR mutants. The fact that BCR contains Rho-GEF and Rac-GAP functions strongly suggest an important role in cytoskeleton modeling by regulating the activity of Rho-like GTPases, such as Rho, Rac and cdc42. We, therefore, compared the function of the ABL/BCR proteins with that of wild-type BCR. Methods We investigated the effects of BCR and ABL/BCRs i.) on the activation status of Rho, Rac and cdc42 in GTPase-activation assays; ii.) on the actin cytoskeleton by direct immunofluorescence; and iii) on cell motility by studying migration into a three-dimensional stroma spheroid model, adhesion on an endothelial cell layer under shear stress in a flow chamber model, and chemotaxis and endothelial transmigration in a transwell model with an SDF-1α gradient. Results Here we show that both ABL/BCRs lost fundamental functional features of BCR regarding the regulation of small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells. Conclusion Our data presented here describe for the first time an analysis of the biological function of the reciprocal t(9;22) ABL/BCR fusion proteins in comparison to their physiological counterpart BCR.
Zwei der wichtigsten Leistungen eines sich entwickelnden Embryos sind der Aufbau des Blutkreislauf- und des Nervensystems. Beide Systeme sind hierarchisch organisierte Strukturen, deren Verzweigungen nahezu alle Teile des Körpers erreichen. Es gibt eine zunehmende Zahl von Hinweisen darauf, dass ihre Entwicklung eng miteinander verknüpft ist, nach ähnlichen Prinzipien verläuft und verwandte molekulare Mechanismen verwendet. Die Entstehung eines funktionellen vaskulären Netzwerks erfordert Signale, die Prozesse wie die Lenkung und die Verzweigung von Gefäßen in den Zielgeweben kontrollieren. Ähnliche Anforderungen werden an wachsende Axone bei der Knüpfung der Verbindungen des Nervensystems während der Embryonalentwicklung gestellt. Einige der Faktoren, die die Lenkung der Axone kontrollieren, spielen auch eine ähnliche Rolle in der vaskulären Entwicklung. Lenkungsmoleküle, die eine Richtungsinformation vermitteln, sind für die Wegfindung der Axone besonders wichtig. Die größte Familie solcher Lenkungsmoleküle wird durch die Semaphorine gebildet. Semaphorine können in acht Klassen unterteilt werden, deren gemeinsames Merkmal eine konservierte Semaphorin-Domäne ist und die unterschieden werden anhand ihrer Klassen-spezifischen carboxyterminalen Domänen. Die Semaphorin-Familie umfasst sowohl sekretierte als auch membrangebundene Proteine. Die am besten charakterisierten hiervon sind die sekretierten Klasse 3 Semaphorine. Eine Kombination von in vitro und in vivo Ansätzen zeigte, dass die Klasse 3 Semaphorine an der Steuerung der Axon- und Dendritenlenkung, der Bildung von Axonbündeln und der neuronalen Migration während der Entwicklung des Nervensystems beteiligt sind. Sie agieren hauptsächlich als repulsiv wirkende Signale, die Axone aus Regionen ausschließen, von den Geweben weg, in denen sie exprimiert sind. Diese Wirkung wird über die Semaphorin-Domäne vermittelt. Verschiedene Hinweise deuten auf eine Beteiligung von Semaphorinen an der Entwicklung des vaskulären Systems. Sowohl homozygote Sema3a- als auch Sema3c-Mausnullmutanten sterben nach der Geburt aufgrund kardiovaskulärer Defekte. Darüber hinaus binden die Rezeptoren für die Klasse 3 Semaphorine, Neuropilin-1 (Nrp-1) und –2 (Nrp-2), einige Isoformen des vaskulären endothelialen Wachstumsfaktors (Vascular Endothelial Growth Factor, VEGF). Neuropilin-1 und Neuropilin-2-defiziente Mäuse und Neuropilin-1/-2-Doppelmutanten weisen Defekte des Gefäßsystems auf, wie z.B. eine Rückbildung der neuralen Vaskularisierung und Abweichungen in der Entwicklung des Herzens und der großen Gefäße. Die membrangebundenen Semaphorine sind bisher nur wenig untersucht, da zuverlässige in vitro Assays fehlen. Somit ist ein genetischer Ansatz der beste Weg, die physiologische Funktion dieser Proteine zu untersuchen. Aus diesen Gründen war die Zielsetzung dieser Arbeit, durch homologe Rekombination in embryonalen Stammzellen eine Mauslinie herzustellen, die ein Nullallel des membrangebundenen Sema5a-Gens trägt. Für diesen Ansatz wurde ein Mitglied der Klasse 5 Semaphorine gewählt, da es nur zwei Mitglieder dieser Klasse im Mausgenom gibt, die weitgehend komplementäre Expressionsmuster aufweisen. Damit unterscheiden sie sich von den anderen Klassen der Semaphorine, deren Mitglieder stark überlappende Expressionsmuster zeigen. Dies verringert die Wahrscheinlichkeit einer gegenseitigen funktionellen Kompensation nach Mutation eines Gens. Die Klasse 5 Semaphorine sind auch deshalb besonders interessant, da sie die einzigen sind, die sowohl in Vertebraten als auch in Invertebraten vertreten sind. Sie sind gekennzeichnet durch sieben carboxyterminale Typ 1-Thrombospondinmodule (TSP) in ihrer extrazellulären Domäne. TSPs wurden ursprünglich in den Proteinen Thrombospondin 1 und 2 gefunden, in denen sie das Auswachsen von Neuriten verschiedener Nervenzelltypen fördern. Dies lässt vermuten, dass Klasse 5 Semaphorine sowohl inhibierende als auch stimulierende Effekte haben könnten, in dem sie unterschiedliche Rezeptoren mit der Semaphorin-Domäne oder der TSPs aktivieren. Das Expressionsmuster von Sema5A und die bekannte Funktion von Semaphorinen in der Ausbildung neuronaler Verbindungen lassen es sinnvoll erscheinen, bei der Untersuchung der mutanten Tiere den Schwerpunkt auf die Entwicklung des Nerven- und des Gefäßsystems zu legen. Aufgrund technischer Schwierigkeiten konnte innerhalb der Bearbeitungszeit dieser Doktorarbeit nur der Phänotyp des vaskulären Systems untersucht werden. Die Inaktivierung des Sema5a-Gens wurde durch die Verwendung eines ‚Targeting’-Vektors erreicht, welcher die Exone 4 und 5 des Sema5a-Gens durch eine Neomycin-Selektionskassette ersetzte. Aus 144 untersuchten ES-Zellklonen wurden drei ES-Zellinien mit einem rekombinierten Sema5a-Locus identifiziert. Zwei der positiven Klone wurden zur Herstellung einer chimären Maus durch die Morula-Aggregationsmethode verwendet. Mit einem der Klone konnte eine männliche Chimäre erzeugt werden, die nach Kreuzung mit NMRI-Wildtyptieren die Mutation an die Nachkommen weitergab. Der Verlust der Proteinexpression in homozygoten Sema5a-Mutanten wurde durch Westernblot-Analyse von Zellmembranpräparationen homozygoter Embryonen unter Verwendung eines Antikörpers gegen das zytoplasmatische Ende von Sema5A bestätigt. Dieses Ergebnis bestätigte, dass die Deletion des vierten und fünften Exons des Sema5a-Gens ein Nullallel hervorbringt. Nach Verpaarungen heterozygoter Mutanten konnten keine Neugeborenen identifiziert werden, die homozygot für das mutierte Allel waren. Homozygte Mutanten starben zwischen E11,5 und E12,5 der Embryonalentwicklung, der Verlust von Sema5A ist also embryonal letal. Die Morphologie der homozygoten Tiere zeigte keinen offensichtlichen Unterschied zu den heterozygoten Embryonen oder zu Wildtyp-Geschwistern auf. Frühe embryonale Musterbildungsprozesse in Sema5a-Nullmutanten sind also nicht gestört. Ein Tod bei dieser Entwicklungsstufe deutet auf einen Defekt in der Entwicklung des Blutgefäßsystems hin, da die Embryonalstadien zwischen E9 und E13 besonders wichtig für die Ausbildung dieser Gefäße sind und viele Mutationen, die Herz und Blutgefäßen beeinträchtigen, den Tod der Embryonen in diesem Stadium bewirken. Das embryonale Blutgefäßsystem in E10,5 und E11,5 Embryonen wurde durch immunhistochemische Färbungen ganzer Embryonen unter Verwendung eines spezifischen gegen das Platelet Endothelial Cell Adhesion Molecule (PECAM) gerichteten Antikörpers dargestellt, welches in vaskulären Endothelzellen exprimiert ist. Die allgemeine Architektur des Gefäßsystems war in homo- und heterozygoten Mutanten ähnlich und wies weder an E10,5 noch an E11,5 besondere Abweichungen auf. Es wurden bei der Lage und der Anzahl intersomitischer Gefäße, der Entwicklung der dorsalen Aorta oder der Vaskularisierung der Extremitätenanlagen keine Abweichungen festgestellt. Morphologische Defekte konnten jedoch bei E10,5 in den Verästelungen der Blutgefäße detektiert werden, die von den Hauptvenen der Cranialregion abzweigen. Die Verzweigungen waren geringer ausgeprägt als in heterozygoten oder Wildtyp-Vergleichstieren. Insbesondere zeigte sich eine Verringerung der Anzahl sekundärer und tertiärer Verzweigungen. In dem sich entwickelnden Embryo führt die wiederholte Verzweigung von Ästen der Hauptvenen zu einem hierarchisch gegliederten Netzwerk großer Gefäße in der Region des medialen Kopfes. Während die Ausbildung dieses Netzwerkes in den Sema5a-/--Tieren beeinträchtigt ist, erscheint die Organisation der kleinen Gefäße in den mehr dorsal und peripher gelegenen Regionen des Kopfes normal. In heterozygoten und homozygoten Mutanten bilden die kleineren Gefäße ein dicht verzweigtes Netzwerk. Die Verminderung der Komplexität der größeren Gefäße konnte in allen untersuchten Nullmutanten beobachtet werden. Es variierte jedoch die Penetranz des Phänotyps. In allen Fällen war die Anzahl primärer Verzweigungen unverändert, während die Anzahl der sekundären und der tertiären Verzweigungen zu unterschiedlichen Graden reduziert war. Im Gegensatz dazu zeigte sich im Verzweigungsmuster von heterozygoten Mutanten und beim Wildtyp nur eine geringe Variabilität zwischen individuellen Embryonen. Dies belegt, dass die Verminderung des Verzweigungsgrades größerer Gefäße nicht innerhalb der normalen Variabilität liegt, sondern durch die Inaktivierung des Sema5a-Gens verursacht wird. Dieser Phänotyp ist in späteren Stadien sogar deutlicher ausgeprägt. In E11,5 Embryonen waren die Stämme der großen Blutgefäße in den Nullmutanten weniger komplex und in einigen Fällen trat sogar eine Reduzierung der Anzahl primärer Verzweigungen auf. Diese spätere Verminderung der Anzahl bereits ausgebildeter primärer Verzweigungen legt nahe, dass der Phänotyp durch eine Rückbildung von Verzweigungen aufgrund möglicher Defizite in deren Reifung und/oder Stabilisierung erfolgt. Die interessanteste Besonderheit der vaskulären Defekte in den Nullmutanten liegt in ihrer regionalen Spezifität. Bis hier ist das Netzwerk großer Gefäße, welches der anterioren Hauptvene entspringt, das einzige Gefäßsystem, in dem Abweichungen entdeckt wurden. Dieses Netzwerk wird durch die strukturelle Umbildung des primären kapillaren Plexuses gebildet. Zwischen E9,5 und E12 sprießen Zweige rostral aus der Hauptvene, um ein hierarchisch organisiertes Netzwerk von Gefäßen zu bilden. Die Umbildung des primären kapillaren Plexus in den mehr rostral und ventral gelegenen Kopfregionen führt zu der Bildung eines hochverzweigten vaskulären Netzwerkes, welches jedoch bei E10,5 noch nicht hierarchisch organisiert erscheint. Die Signale, die für diesen unterschiedlichen Ablauf der Musterbildung während der Entwicklung des Gefäßsystems des Kopfes verantwortlich sind, sind noch unbekannt. Die besonderen Defekte in der stereotypischen Organisation der cranialen Gefäße in Sema5a-Mutanten legt nahe, dass Sema5A eines dieser Signale sein könnte. Es könnte Teil eines Rezeptor/Ligandenkomplexes sein, welcher positionelle Signale für das Verzweigen und das Wachstum großer Gefäße in rostraler Richtung liefert. Sema5A könnte die Bildung von Verzweigungen durch die Regulierung der Wanderung endothelialer Zellen, ihrer Proliferation oder ihrer Interaktion mit unterstützenden Zellen oder der extrazellulären Matrix kontrollieren. Sema5A könnte Teil eines neuen Signalweges sein oder als Teil eines der bekannten Signalwegs wirken, welcher die Entwicklung des Gefäßsystems reguliert. Einer der Signalwege, die essentiell für die Gefäßbildung sind, wird durch VEGF und Angiopoietin (Ang-1) reguliert. Sowohl in VEGF-, als auch in Ang-1-Mutanten ist die Gefäßumbildung im Kopf beeinträchtigt. Insbesondere erscheint das Netzwerk kleiner Gefäße in den Ang-1 Nullmutanten als nur nur teilweise restrukturiert und die großen Gefäße als weniger komplex. Das Verzweigungsmuster der großen Gefäße in den Ang-1- Nullmutanten ähnelt auffallend dem der Sema5a-Nullmutanten. Eine zweite Ähnlichkeit in den Phänotypen von Ang-1- und Sema5a-Mutanten zeigt sich in der Reduzierung der primären Verzweigungen, welche in den Sema5a-Nullmutanten bei E11,5 beobachtet wird. Hier könnte die Verminderung aus einer Rückbildung von Gefäßen resultieren, wie sie auch typischerweise in Mutanten für Ang-1 oder dessen Rezeptor auftritt. Diese Beobachtung legt nahe, dass Sema5A ein neuer Teilnehmer innerhalb des Ang-1-Signalweges ist, welcher die Auswirkung von Ang-1 auf die endothelialen Zellen der großen Gefäße entweder vermittelt oder moduliert und dadurch das spezifische Muster der Blutgefäße des Kopfes beeinflußt. Mit dieser Doktorarbeit wird zum ersten Mal eine funktionelle Untersuchung des Klasse 5 Semaphorins Sema5A vorgestellt. Die phänotypische Untersuchung von Mäusen, die Nullallele für Sema5a-Gens tragen ergab, dass dieses membrangebundene Protein essentiell für die embryonale Entwicklung ist. Es ist an der Musterbildung des Gefäßsystems beteiligt. Seine Aufgabe besteht möglicherweise darin, die Bereitstellung positioneller Signale für die Ausbildung von Gefäßverzweigungen zu gewährleisten. Einige grundlegende Fragen werden durch diesen Phänotyp aufgeworfen. Sowohl die Ursache für die embryonale Sterblichkeit als auch die zellulären Prozesse, welche in den Sema5a-Nullmutanten beeinträchtigt sind, müssen noch beschrieben werden. Unbekannt ist ebenfalls, ob zusätzlich zu der hier beschriebenen Rolle von Sema5A in der Gefäßbildung dieses an der Entwicklung des Nervensystems beteiligt ist. Die ersten Daten über die physiologische Rolle von Sema5A, welche mit dieser Arbeit vorgelegt werden, öffnen den Weg für weitergehende Untersuchungen über die Funktion des Proteins während der Embrionalentwicklung. Das hier erstmals vorgestellte Modellsystem ermöglicht es, Sema5A regulierte zelluläre Mechanismen zu untersuchen. Zusätzlich stellt es ein Werkzeug zur Verfügung, um die funktionelle Beziehung zwischen der Entwicklung des kardiovaskulären Systems und des Nervensystems zu untersuchen. Damit können die Aufgaben der Semaphorin-Proteinfamilie, die an diesen beiden wichtigen Prozessen beteiligt sind, näher charakterisiert werden.
A resampling method based on the bootstrap and a bias-correction step is developed for improving the Value-at-Risk (VaR) forecasting ability of the normal-GARCH model. Compared to the use of more sophisticated GARCH models, the new method is fast, easy to implement, numerically reliable, and, except for having to choose a window length L for the bias-correction step, fully data driven. The results for several different financial asset returns over a long out-of-sample forecasting period, as well as use of simulated data, strongly support use of the new method, and the performance is not sensitive to the choice of L. Klassifizierung: C22, C53, C63, G12
We evaluate the asset pricing implications of a class of models in which risk sharing is imperfect because of the limited enforcement of intertemporal contracts. Lustig (2004) has shown that in such a model the asset pricing kernel can be written as a simple function of the aggregate consumption growth rate and the growth rate of consumption of the set of households that do not face binding enforcement constraints in that state of the world. These unconstrained households have lower consumption growth rates than constrained households, i.e. they are located in the lower tail of the crosssectional consumption growth distribution. We use household consumption data from the U.S. Consumer Expenditure Survey to estimate the pricing kernel implied by the model and to evaluate its performance in pricing aggregate risk. We employ the same data to construct aggregate consumption and to derive the standard complete markets pricing kernel. We find that the limited enforcement pricing kernel generates a market price of risk that is substantially larger than the standard complete markets asset pricing kernel. Klassifizierung: G12, D53, D52, E44
In this paper we quantitatively characterize the optimal capital and labor income tax in an overlapping generations model with idiosyncratic, uninsurable income shocks, where households also differ permanently with respect to their ability to generate income. The welfare criterion we employ is ex-ante (before ability is realized) expected (with respect to uninsurable productivity shocks) utility of a newborn in a stationary equilibrium. Embedded in this welfare criterion is a concern of the policy maker for insurance against idiosyncratic shocks and redistribution among agents of different abilities. Such insurance and redistribution can be achieved by progressive labor income taxes or taxation of capital income, or both. The policy maker has then to trade off these concerns against the standard distortions these taxes generate for the labor supply and capital accumulation decision. We find that the optimal capital income tax rate is not only positive, but is significantly positive. The optimal (marginal and average) tax rate on capital is 36%, in conjunction with a progressive labor income tax code that is, to a first approximation, a flat tax of 23% with a deduction that corresponds to about $6,000 (relative to an average income of households in the model of $35,000). We argue that the high optimal capital income tax is mainly driven by the life cycle structure of the model whereas the optimal progressivity of the labor income tax is due to the insurance and redistribution role of the income tax system. Klassifizierung: E62, H21, H24
Assumptions about the dynamic and distributional behavior of risk factors are crucial for the construction of optimal portfolios and for risk assessment. Although asset returns are generally characterized by conditionally varying volatilities and fat tails, the normal distribution with constant variance continues to be the standard framework in portfolio management. Here we propose a practical approach to portfolio selection. It takes both the conditionally varying volatility and the fat-tailedness of risk factors explicitly into account, while retaining analytical tractability and ease of implementation. An application to a portfolio of nine German DAX stocks illustrates that the model is strongly favored by the data and that it is practically implementable. Klassifizierung: C13, C32, G11, G14, G18
Baby boomer retirement security: the roles of planning, financial literacy and housing wealth
(2006)
We compare wealth holdings across two cohorts of the Health and Retirement Study: the early Baby Boomers in 2004, and individuals in the same age group in 1992. Levels and patterns of total net worth have changed relatively little over time, though Boomers rely more on housing equity than their predecessors. Most important, planners in both cohorts arrive close to retirement with much higher wealth levels and display higher financial literacy than non-planners. Instrumental variables estimates show that planning behavior can explain the differences in savings and why some people arrive close to retirement with very little or no wealth. Klassifizierung: D91, E21
We use data from several waves of the Survey of Consumer Finances to document credit and debit card ownership and use across US demographic groups. We then present recent theoretical and empirical contributions to the study of credit and debit card behavior. Utilization rates of credit lines and portfolios of card holders present several puzzles. Credit line increases initiated by banks lead households to restore previous utilization rates. High-interest credit card debt co-exists with substantial holdings of low-interest liquid assets and with accumulation of retirement assets. Although available evidence disputes ignorance of credit card terms by card holders, redit card rates do not respond to competition. There is a rising trend in bankruptcy and delinquency, partly attributable to an increased tendency of households to declare bankruptcy associated with reduced social stigma, ease of procedures, and financial incentives. Co-existence of credit card debt with retirement assets can be explained through self-control hyperbolic discounting. Strategic default motives contribute partly to observed co-existence of credit card debt with low-interest liquid assets. A framework of “accountant-shopper” households, in which a rational accountant tries to control an impulsive shopper, seems consistent with both types of co-existence and with observed utilization of credit lines. JEL Classification: G11, E21
The tax codes in many countries allow for special tax advantages for investments in special retirement plans. Probably the most important advantage to these plans is that profits usually remain untaxed. This paper deals with the question, which assets are preferable in a taxdeferred account (TDA). Contrary to the conventional wisdom that one should prefer bonds in the TDA, it is shown that especially in early years, stocks can be the preferred asset to hold in the TDA for an investor maximizing final wealth, given a certain asset allocation. The higher the performance of stocks compared to bonds, the higher the tax burden put on stocks compared to bonds. Simultaneously, the longer the remaining investment horizon, the larger the relative outperformance of the optimal asset location strategy compared to the myopic strategy of locating bonds in the TDA. An algorithm is provided to determine the investment strategy that maximizes (expected) funds at the end of a given investment horizon when there is an analytical solution.
This paper analyzes the relation between demographic structure and real asset returns on treasury bills, bonds and stocks for the G7-countries (United States, Canada, Japan, Italy, France, the United Kingdom and Germany). A macroeconomic multifactor model is used to examine a variety of different demographic factors from 1951 to 2002. There was no robust relationship found between shocks in demographic variables and asset returns in the framework of these models, which suggests that Asset Meltdown is rather fiction than fact.
Both banks and open end real estate funds effectuate liquidity transformation in large amounts and high scales. Because of this similarity the latter should be analyzed using the same methodologies as usually applied for banks. We show that the work in the tradition of Diamond and Dybvig (1983), especially Allen and Gale (1998) and Diamond and Rajan (2001), provides an applicable theoretical framework. We used this as the basis for our model for open end real estate funds. We then examined the usefulness of the modeling structure in analyzing open end real estate funds. First, we could show that withdrawing of capital resulting in a run is not always inefficient. Instead, withdrawing can as well be referred to the situation where the low return of an open end fund unit in comparison to other opportunities makes, (partial) withdrawal viewed from the risk-sharing perspective optimal. Even with costly liquidation, this result will hold, though we will have deadweight losses in such a situation. Second, introducing a secondary market in our model does, not in general, resolve the problem of deadweight losses associated with foreclosure. If assets are sold during a run, we do not only have a transfer of value but it can also create an economic cost. Because funds are forced to liquidate the illiquid asset in order to fulfill their obligations, the price of the real estate asset is forced down making the crisis worse. Rather than providing insurance, such that investors receive a transfer in negative outcomes, the secondary market does the opposite. It provides a negative insurance instead. Third, our model proves that the open end structure provides a monitoring function which serves as an efficient instrument to discipline the funds management. Therefore, we argue that an open end structure can represent a more adequate solution to securitize real estate or other illiquid assets. Instead of transforming open end in closed end structures, fund runs should be accepted as a normal phenomenon to clear the market from funds with mismanagement.
Seit 2005 ist die Bibliothek des Südasien-Instituts in Kooperation mit der UB Heidelberg Trägerin des DFG-geförderten Sondersammelgebiets Südasien. Damit hat sie von der UB Tübingen ein traditionsreiches Sondersammelgebiet übernommen, dessen Geschichte bis ins Jahr 1949 zurückreicht. Der Vortrag wird zum Einen einen kurzen Überblick über den historischen Kontext des SSG Südasien geben und zum Anderen über Neuentwicklungen, wie z.B. die Virtuelle Fachbibliothek Südasien, die in den letzten zwei Jahren an der Bibliothek des Südasien-Instituts aufgebaut wurde. Vor diesem Hintergrund soll vor allem das Kooperationspotential im Bereich digitaler Informationsressourcen beleuchtet werden.
The interaction of T cells and antigen-presenting cells is central to adaptive immunity and involves the formation of immunological synapses in many cases. The surface molecules of the cells form a characteristic spatial pattern whose formation mechanisms and function are largely unknown. We perform computer simulations of recent experiments on geometrically repatterned immunological synapses and explain the emerging structure as well as the formation dynamics. Only the combination of in vitro experiments and computer simulations has the potential to pinpoint the kind of interactions involved. The presented simulations make clear predictions for the structure of the immunological synapse and elucidate the role of a self-organizing attraction between complexes of T cell receptor and peptide–MHC molecule, versus a centrally directed motion of these complexes.
Enzymatic and antisense effects of a specific anti-Ki-ras ribozyme in vitro and in cell culture
(1999)
Due to their mode of action, ribozymes show antisense effects in addition to their specific cleavage activity. In the present study we investigated whether a hammerhead ribozyme is capable of cleaving mutated Ki-ras mRNA in a pancreatic carcinoma cell line and whether antisense effects contribute to the activity of the ribozyme. A 2[prime]-O-allyl modified hammerhead ribozyme was designed to cleave specifically the mutated form of the Ki-ras mRNA (GUU motif in codon 12). The activity was monitored by RT-PCR on Ki-ras RNA expression by determination of the relative amount of wild type to mutant Ki-ras mRNA, by 5-bromo-2[prime]-deoxy-uridine incorporation on cell proliferation and by colony formation in soft agar on malignancy in the human pancreatic adenocarcinoma cell line CFPAC-1, which is heterozygous for the Ki-ras mutation. A catalytically inactive ribozyme was used as control to differentiate between antisense and cleavage activity and a ribozyme with random guide sequences as negative control. The catalytically active anti-Ki-ras ribozyme was at least 2-fold more potent in decreasing cellular Ki-ras mRNA levels, inhibiting cell proliferation and colony formation in soft agar than the catalytically inactive ribozyme. The catalytically active anti-Ki-ras ribozyme, but not the catalytically inactive or random ribozyme, increased the ratio of wild type to mutated Ki-ras mRNA in CFPAC-1 cells. In conclusion, both cleavage activity and antisense effects contribute to the activity of the catalytically active anti-Ki-ras hammerhead ribozyme. Specific ribozymes might be useful in the treatment of pancreatic carcinomas containing an oncogenic GTT mutation in codon 12 of the Ki-ras gene.
Customer channel migration
(2006)
Customer Channel Migration deals with the active management of a customer's channel usage behavior with the aim to increase her profitability and lifetime. Hence, the dissertation answers two distict questions: on one hand, it investigates the impact of channel use on a customer's profitability and lifetime. On the other hand, it is researched how a customer's channel usage behavior can be influenced and managed. The cumulative dissertation consists of five articles: the first article describes the matching method and its application to marketing problems. The matching method is necessary to estimate the unbiased impact of channel use on a customer's profitability and lifetime. The second article describes the application of the matching method in order to determine the monetary implications of using the internet in the financial services industry. The third article investigates the impact of the internet use on a customer's lifetime. The forth and the fifth article of the dissertation both investigate the management of a customer's channel usage behavior. The forth article designs a scale to measure a customer's perceived channel value. The fifth article builds upon these findings and develops a model which explains a customer's channel usage behavior. Based on these insights this article derives some managerial implications on how to manage customers between different channels.
Nuclear matter, that takes the form of protons and neutrons under normal conditions, is subject to a phase transition at high temperatures and densities, liberating the quarks and gluons that are usually confined in nucleons and creating a medium of free partons: the Quark-Gluon-Plasma. It is generally believed that this state of matter can be created in relativistic collisions of heavy nuclei. The study of the medium created in these collisions is the subject of heavy-ion physics. One topic within this field are particles with high transverse momentum, that are created in initial hard collisions between partons of the incoming nuclei. The energetic partons lose energy due to interactions with the medium before they fragment into a jet of hadrons. Due to momentum conservation, these jets are usually created as back-to-back pairs, or less commonly as three-jet or photon-jet events, where a single jet is balanced by a hard photon. The energy loss can be measured using correlations between particles with high transverse momenta. A trigger particle is selected with very high transversemomentum and the distribution of the azimuthal angle of associated particles in the same event is studied, relative to the azimuth of the trigger particle.These azimuthal correlations show a peak for opening angles around 0 from particles selected from the same jet, and a second peak at opening angles around 180 degrees from back-to-back di-jets. Random combinations with the underlying event generate a flat background, extending over the full range of opening angles. The STAR experiment observed a modification of these correlations in central Au+Au collisions, where trigger particles with 4GeV < pT(trigger) < 6GeV and associated particles with 2GeV < pT(trigger) < 4GeV were selected. A strong suppression has been observed for away-side correlations in central Au+Au collisions, relative to p+p, d+Au and peripheral Au+Au data. This can be explained by assuming two partons going in opposite directions, where at least one has to travel a large distance through the medium, causing energy loss and effectively removing the event from the analysis. For near-side correlations, no significant modification has been observed, which can be explained by surface emission, assuming that the observed jets have travelled only a short distance in themedium, not leaving enough time for interactions with the medium. Both trigger- and associated particles in a correlation analysis with charged hadrons are subject to modifications due to the medium. This can be avoided by using photon-jet events instead of di-jets, because the photon does not interact with the medium and therefore provides the best available measure of the properties of the opposite jet in the presence of the underlying event. This thesis studies azimuthal correlations between regions of high energy deposition in the electro-magnetic calorimeter as trigger- and charged tracks as associated particles. The data sample had been enriched by online event selection, allowing for the selection of trigger particles with a transverse energy of more than 10GeV and associated particles with more than 2,3 or 4 GeV. The away-side yield per trigger particle is strongly suppressed like in correlations between charged particles. The near-side yield is also reduced by about a factor two, clearly different from charged correlations. The trigger particles are a mixture of photon pairs from the decays of neutral pions and single photons, mainly from photon-jet events, with small contributions from other hadron decays and fragmentation photons. Pythia simulations predict a ratio of neutral pions to prompt photons of 3.5:1 in p+p collisions with the same cuts as in the presented analysis. Single particle suppression further reduces this ratio in central Au_Au collisions, down to about 0.8:1, indicating that the majority of trigger particles in central Au+Au collisions are prompt photons. The increasing fraction of prompt photon triggers without an accompanying jet and therefore zero associated yield reduces the average yield per trigger particle. The magnitude of the observed effect agrees well with the expectation from Pythia simulations and the assumption of a single particle suppression by a factor 4-5. An analysis of away-side correlations is more difficult, because both photon-jet and di-jet events contribute. The aim is the separation of these two contributions. As a clear separation is not possible with the available dataset, a comparison with two different scenarios is given, where a surprisingly small suppression by only a factor of about 5 is favoured for both dijet- and photon-jet-correlations. A separate measurement of both contributions will be possible by a shower-shape analysis with the EM calorimeter or a comparison with charged correlations in the same kinematic region.
The conditionally-lethal pso4-1 mutant allele of the spliceosomal-associated PRP19 gene allowed us to study this gene’s influence on pre-mRNA processing, DNA repair and sporulation. Phenotypes related to intron-containing genes were correlated to temperature. Splicing reporter systems and RT–PCR showed splicing efficiency in pso4-1 to be inversely correlated to growth temperature. A single amino acid substitution, replacing leucine with serine, was identified within the N-terminal region of the pso4-1 allele and was shown to affect the interacting properties of Pso4-1p. Amongst 24 interacting clones isolated in a two-hybrid screening, seven could be identified as parts of the RAD2, RLF2 and DBR1 genes. RAD2 encodes an endonuclease indispensable for nucleotide excision repair (NER), RLF2 encodes the major subunit of the chromatin assembly factor I, whose deletion results in sensitivity to UVC radiation, while DBR1 encodes the lariat RNA splicing debranching enzyme, which degrades intron lariat structures during splicing. Characterization of mutagen-sensitive phenotypes of rad2{Delta}, rlf2{Delta} and pso4-1 single and double mutant strains showed enhanced sensitivity for the rad2{Delta} pso4-1 and rlf2{Delta} pso4-1 double mutants, suggesting a functional interference of these proteins in DNA repair processes in Saccharomyces cerevisiae.
Chemically modified bases are frequently used to stabilize nucleic acids, to study the driving forces for nucleic acid structure formation and to tune DNA and RNA hybridization conditions. In particular, fluorobenzene and fluorobenzimidazole base analogues can act as universal bases able to pair with any natural base and to stabilize RNA duplex formation. Although these base analogues are compatible with an A-form RNA geometry, little is known about the influence on the fine structure and conformational dynamics of RNA. In the present study, nano-second molecular dynamics (MD) simulations have been performed to characterize the dynamics of RNA duplexes containing a central 1'-deoxy-1'-(2,4-difluorophenyl)-ß-D-ribofuranose base pair or opposite to an adenine base. For comparison, RNA with a central uridine:adenine pair and a 1'-deoxy-1'-(phenyl)-ß-D-ribofuranose opposite to an adenine was also investigated. The MD simulations indicate a stable overall A-form geometry for the RNAs with base analogues. However, the presence of the base analogues caused a locally enhanced mobility of the central bases inducing mainly base pair shear and opening motions. No stable ‘base-paired’ geometry was found for the base analogue pair or the base analogue:adenine pairs, which explains in part the universal base character of these analogues. Instead, the conformational fluctuations of the base analogues lead to an enhanced accessibility of the bases in the major and minor grooves of the helix compared with a regular base pair.
The radiation-sensitive mutant pso4-1 of Saccharomyces cerevisiae shows a pleiotropic phenotype, including sensitivity to DNA cross-linking agents, nearly blocked sporulation and reduced mutability. We have cloned the putative yeast DNA repair gene PSO4 from a genomic library by complementation of the blocked UV-induced mutagenesis and of sporulation in diploids homozygous for pso4-1. Sequence analysis revealed that gene PSO4 consists of 1512 bp located upstream of UBI4 on chromosome XII and encodes a putative protein of 56.7 kDa. PSO4 is allelic to PRP19, a gene encoding a spliceosome-associated protein, but shares no significant homology with other yeast genes. Gene disruption with a destroyed reading frame of our PSO4 clone resulted in death of haploid cells, confirming the finding that PSO4/PRP19 is an essential gene. Thus, PSO4 is the third essential DNA repair gene found in the yeast S.cerevisiae.
Mismatch repair is a highly conserved system that ensures replication fidelity by repairing mispairs after DNA synthesis. In humans, the two protein heterodimers hMutSα (hMSH2‐hMSH6) and hMutLα (hMLH1‐hPMS2) constitute the centre of the repair reaction. After recognising a DNA replication error, hMutSα recruits hMutLα, which then is thought to transduce the repair signal to the excision machinery. We have expressed an ATPase mutant of hMutLα as well as its individual subunits hMLH1 and hPMS2 and fragments of hMLH1, followed by examination of their interaction properties with hMutSα using a novel interaction assay. We show that, although the interaction requires ATP, hMutLα does not need to hydrolyse this nucleotide to join hMutSα on DNA, suggesting that ATP hydrolysis by hMutLα happens downstream of complex formation. The analysis of the individual subunits of hMutLα demonstrated that the hMutSα–hMutLα interaction is predominantly conferred by hMLH1. Further experiments revealed that only the N‐terminus of hMLH1 confers this interaction. In contrast, only the C‐terminus stabilised and co‐immunoprecipitated hPMS2 when both proteins were co‐expressed in 293T cells, indicating that dimerisation and stabilisation are mediated by the C‐terminal part of hMLH1. We also examined another human homologue of bacterial MutL, hMutLβ (hMLH1–hPMS1). We show that hMutLβ interacts as efficiently with hMutSα as hMutLα, and that it predominantly binds to hMutSα via hMLH1 as well.
Aim of the study: Investigation, whether water-filtered infrared-A (wIRA) irradiation during moderate bicycle ergometer endurance exercise has effects especially on local fat reduction and on weight reduction beyond the effects of ergometer exercise alone.
Methods: Randomised controlled study with 40 obese females (BMI 30-40 (median: 34.5), body weight 76-125 (median: 94.9) kg, age 20-40 (median: 35.5) years, isocaloric nutrition), 20 in the wIRA group and 20 in the control group. In both groups each participant performed 3 times per week over 4 weeks for 45 minutes bicycle ergometer endurance exercise with a constant load according to a lactate level of 2 mmol/l (aerobic endurance load, as determined before the intervention period). In the wIRA group in addition large parts of the body (including waist, hip, and thighs) were irradiated during all ergometries of the intervention period with visible light and a predominant part of water-filtered infrared-A (wIRA), using the irradiation unit “Hydrosun® 6000” with 10 wIRA radiators (Hydrosun® Medizintechnik, Müllheim, Germany, radiator type 500, 4 mm water cuvette, yellow filter, water-filtered spectrum 500-1400 nm) around a speed independent bicycle ergometer.
Main variable of interest: change of “the sum of circumferences of waist, hip, and both thighs of each patient” over the intervention period (4 weeks). Additional variables of interest: body weight, body mass index BMI, body fat percentage, fat mass, fat-free mass, water mass (analysis of body composition by tetrapolar bioimpedance analysis), assessment of an arteriosclerotic risk profile by blood investigation of variables of lipid metabolism (cholesterol, triglycerides, high density lipoproteins HDL, low density lipoproteins LDL, apolipoprotein A1, apolipoprotein B), clinical chemistry (fasting glucose, alanin-aminotransferase ALT (= glutamyl pyruvic transaminase GPT), gamma-glutamyl-transferase GGT, creatinine, albumin), endocrinology (leptin, adiponectin (= adipo Q), homocysteine, insulin). All variables were at least measured before and after the intervention period. Ergometry (ECG, blood pressure behaviour, lactate curve with power at 2, 3 and 4 mmol/l) before the intervention period. In addition: nutrition training ahead of and during the intervention period with a nutrition protocol over one week for assessment of the daily energy intake; calculation of basic metabolic rate and total energy requirement. Assessment of undesired effects.
Only methods of non-parametric statistics were used, both descriptive (median, percentiles of 25 and 75 (= interquartile range), minimum, maximum) and confirmatory (two-sided Mann-Whitney U test for unpaired samples for the only one main variable of interest). Total error probability: .05 (5%). An intention to treat analysis ITT with last observed carry forward method was used preferably (presented results) and in addition an on treatment analysis OT. Only 2 (treatment group) and 4 (control group) drop-outs occurred (mostly due to lack of time).
Results: The “sum of circumferences of waist, hip, and both thighs of each patient” decreased during the 4 weeks significantly more (p<.001) in the wIRA group than in the control group: medians and interquartile ranges: -8.0 cm (-10.5 cm/-4.1 cm) vs. -1.8 cm (-4.4 cm/0.0 cm).
As well “body weight of each patient” decreased during the 4 weeks markedly more in the wIRA group than in the control group: medians and interquartile ranges: -1.9 kg (-4.0 kg/0.0 kg) vs. 0.0 kg (-1.5 kg/+0.4 kg); median of body weight changed from 99.3 kg to 95.6 kg (wIRA) vs. 89.9 kg to 89.6 kg (control). A similar effect showed the body mass index BMI.
Blood variables of interest remained unchanged or showed some slight improvements during the treatment period, concerning most variables with no obvious differences between the two groups; insulin showed a slight trend to decrease in the wIRA group and to increase in the control group.
Undesired effects of the treatment were not seen.
Discussion: The results of the study suggest, that wIRA – during moderate bicycle ergometer endurance exercise as lipolytic stimulus – increases local lipolysis with a local fat reduction (thighs) in the otherwise bradytrophic fatty tissue. The presumably underlying mechanisms of wIRA have already been proven: wIRA acts both by thermal effects and by non-thermal effects. Thermal effects of wIRA are the generation of a therapeutic field of warmth with the increase of tissue temperature, tissue oxygen partial pressure, and tissue blood flow, and by this regional metabolism. As fatty tissue normally has a slow metabolism (bradytrophic and hypothermic tissue) with a low rate of lipolysis, wIRA can increase lipolysis in fatty tissue and the mobilized fats are burned in musculature during the ergometer exercise.
Conclusion: The results of the study indicate, that wIRA irradiation during moderate ergometer endurance exercise can be used – in combination with an appropriate nutrition – to improve body composition, especially local fat distribution, and the reduction of fat and body weight in obese persons.
RNA interference (RNAi) has emerged as a powerful tool to induce loss-of-function phenotypes by post-transcriptional silencing of gene expression. In this study we wondered whether inducible RNAi-cassettes integrated into cellular DNA possess the power to trigger neoplastic growth. For this purpose inducible RNAi vectors containing tetracycline (Tet)-responsive derivatives of the H1 promoter for the conditional expression of short hairpin RNA (shRNA) were used to target human polo-like kinase 1 (Plk1), which is overexpressed in a broad spectrum of human tumors. In the absence of doxycycline (Dox) HeLa clones expressing TetR, that carry the RNAi-cassette stably integrated, exhibited no significant alteration in Plk1 expression levels. In contrast, exposure to Dox led to marked downregulation of Plk1 mRNA to 3% and Plk1 protein to 14% in cell culture compared to mismatch shRNA/Plk1-expressing cells. As a result of Plk1 depletion cell proliferation decreased to 17%. Furthermore, for harnessing RNAi for silencing disease-related genes in vivo we transplanted inducible RNAi-HeLa cells onto nude mice. After administration of Dox knockdown of Plk1 expression was observed correlating to a significant inhibition of tumor growth. Taken together, our data revealed that genomically integrated RNAi-elements are suitable to hamper tumor growth by conditional expression of shRNA.
Natural objects provide partially redundant information to the brain through different sensory modalities. For example, voices and faces both give information about the speech content, age, and gender of a person. Thanks to this redundancy, multimodal recognition is fast, robust, and automatic. In unimodal perception, however, only part of the information about an object is available. Here, we addressed whether, even under conditions of unimodal sensory input, crossmodal neural circuits that have been shaped by previous associative learning become activated and underpin a performance benefit. We measured brain activity with functional magnetic resonance imaging before, while, and after participants learned to associate either sensory redundant stimuli, i.e. voices and faces, or arbitrary multimodal combinations, i.e. voices and written names, ring tones, and cell phones or brand names of these cell phones. After learning, participants were better at recognizing unimodal auditory voices that had been paired with faces than those paired with written names, and association of voices with faces resulted in an increased functional coupling between voice and face areas. No such effects were observed for ring tones that had been paired with cell phones or names. These findings demonstrate that brief exposure to ecologically valid and sensory redundant stimulus pairs, such as voices and faces, induces specific multisensory associations. Consistent with predictive coding theories, associative representations become thereafter available for unimodal perception and facilitate object recognition. These data suggest that for natural objects effective predictive signals can be generated across sensory systems and proceed by optimization of functional connectivity between specialized cortical sensory modules.
Background The proto-oncogene pituitary tumor-transforming gene (PTTG) has been shown to be abundantly overexpressed in a large variety of neoplasms likely promoting neo-vascularization and tumor invasiveness. In this study, we investigated a potential role for PTTG mRNA expression as a marker to evaluate the future clinical outcome of patients diagnosed with primary cancer of the head and neck. Methods Tumor samples derived from primary tumors of 89 patients suffering from a squamous cell carcinoma were analyzed for PTTG mRNA-expression and compared to corresponding unaffected tissue. Expression levels were correlated to standard clinico-pathological parameters based on a five year observation period. Results In almost all 89 tumor samples PTTG was found to be overexpressed (median fold increase: 2.1) when compared to the unaffected tissue specimens derived from the same patient. The nodal stage correlated with PTTG transcript levels with significant differences between pN0 (median expression: 1.32) and pN+ (median expression: 2.12; P = 0.016). In patients who developed a tumor recurrence we detected a significantly higher PTTG expression in primary tumors (median expression: 2.63) when compared to patients who did not develop a tumor recurrence (median expression: 1.29; P = 0.009). Since the median expression of PTTG in patients with tumor stage T1/2N0M0 that received surgery alone without tumor recurrence was 0.94 versus 3.82 in patients suffering from a tumor recurrence (P = 0.006), PTTG expression might provide a feasible mean of predicting tumor recurrence. Conclusion Elevated PTTG transcript levels might be used as a prognostic biomarker for future clinical outcome (i.e. recurrence) in primary squamous cell carcinomas of the head and neck, especially in early stages of tumor development.
The paper will provide a brief background to the history of the organization and cooperative efforts of African studies librarians in the United States including their efforts at international cooperation. Particular emphasis will be placed on the current opportunities for improved cooperation as digitization activities increase. Examples will include the DISA and Aluka initiatives and well as the Timbuktu manuscript digitization project at the Center for Research Libraries. Particular emphasis will placed on the possibilities for German-North American cooperation in the area of digital projects of historical photographs given the extensive collections held at Northwestern and Frankfurt.
... This year's Scientific Symposium of the University Library is already number six in the row. It was again prepared and organised like some of the previous conferences together with our North American partners. This means that a continuous specialists’ discussion and a professional partnership have been already installed. All librarians and information managers are invited to learn more about the results of this cooperation every year when it's time for the next Symposium during Frankfurt Book Fair. ...
Large American research libraries have been acquiring - by purchase and by lease - huge multi-disciplinary electronic collections of primary and secondary source materials. For example, the Digital Evans and Canadian Poetry easily make available to scholars primary materials that once were scattered in libraries across North America and Europe. The American State Papers, 1789 – 1838 collection allows easier searching of fragile rare materials. Collections made by libraries digitizing their own holdings, such the Archive of Early American Images from the John Carter Brown Library at Brown University, make research materials more discoverable and usable. Yet recent scholarship in American Studies by American and European scholars makes relatively little use of these new materials. Both disparities and congruities in what scholars use and what research libraries collect are apparent. Some simple reasons explain the dissonance. Furthermore, conversations with scholars suggest that materials and collections alone will not suffice to support research. Librarians’ skills and actions will increase the value of the new research materials.
We examine experimental signatures of TeV-mass black hole formation in heavy ion collisions at the LHC. We find that the black hole production results in a complete disappearance of all very high p_T (> 500 GeV) back-to-back correlated di-jets of total mass M > M_f ~ 1 TeV. We show that the subsequent Hawking-decay produces multiple hard mono-jets and discuss their detection. We study the possibility of cold black hole remnant (BHR) formation of mass ~ M_f and the experimental distinguishability of scenarios with BHRs and those with complete black hole decay. Finally we point out that a Heckler-Kapusta-Hawking plasma may form from the emitted mono-jets. In this context we present new simulation data of Mach shocks and of the evolution of initial conditions until the freeze-out.
We propose to measure azimuthal correlations of heavy-flavor hadrons to address the status of thermalization at the partonic stage of light quarks and gluons in high-energy nuclear collisions. In particular, we show that hadronic interactions at the late stage cannot significantly disturb the initial back-to-back azimuthal correlations of DDbar pairs. Thus, a decrease or the complete absence of these initial correlations does indicate frequent interactions of heavy-flavor quarks and also light partons in the partonic stage, which are essential for the early thermalization of light partons.
The experimental signatures of TeV-mass black hole (BH) formation in heavy ion collisions at the LHC is examined. We find that the black hole production results in a complete disappearance of all very high p_T (> 500 GeV) back-to-back correlated di-jets of total mass M > M_f ~ 1 TeV. We show that the subsequent Hawking-decay produces multiple hard mono-jets and discuss their detection. We study the possibility of cold black hole remnant (BHR) formation of mass ~ M_f and the experimental distinguishability of scenarios with BHRs and those with complete black hole decay. Due to the rather moderate luminosity in the first year of LHC running the least chance for the observation of BHs or BHRs at this early stage will be by ionizing tracks in the ALICE TPC. Finally we point out that stable BHRs would be interesting candidates for energy production by conversion of mass to Hawking radiation.
The concept of Large Extra Dimensions (LED) provides a way of solving the Hierarchy Problem which concerns the weakness of gravity compared with the strong and electro-weak forces. A consequence of LED is that miniature Black Holes (mini-BHs) may be produced at the Large Hadron Collider in p+p collisions. The present work uses the CHARYBDIS mini-BH generator code to simulate the hadronic signal which might be expected in a mid-rapidity particle tracking detector from the decay of these exotic objects if indeed they are produced. An estimate is also given for Pb+Pb collisions.
We develop a 1+1 dimensional hydrodynamical model for central heavy-ion collisions at ultrarelativistic energies. Deviations from Bjorken's scaling are taken into account by implementing finite-size profiles for the initial energy density. The calculated rapidity distributions of pions, kaons and antiprotons in central Au+Au collisions at the c.m. energy 200 AGeV are compared with experimental data of the BRAHMS Collaboration. The sensitivity of the results to the choice of the equation of state, the parameters of initial state and the freeze-out conditions is investigated. The best fit of experimental data is obtained for a soft equation of state and Gaussian-like initial profiles of the energy density.
Reasoning about the correctness of program transformations requires a notion of program equivalence. We present an observational semantics for the concurrent lambda calculus with futures Lambda(fut), which formalizes the operational semantics of the programming language Alice ML. We show that natural program optimizations, as well as partial evaluation with respect to deterministic rules, are correct for Lambda(fut). This relies on a number of fundamental properties that we establish for our observational semantics.
The paper presents an overview about some of the international relevant projects of digital resources in Germany. Online presentations of primary sources, e.g. photographic material, and bibliographic tools supporting research, such as cross searching, will be presented as potential partners of resource sharing with North America. Not only the possibility of cooperation will be sketched, but also necessary preliminary work and some obstacles will be outlined. This report is accompanied by a short characterization of African studies in Germany and the status quo of Open Access-initiatives.
This work gives a detailed introduction into a fully new experimental method to investigate the quantum crystal behavior of solid Helium-4. It has been found that a fascinating new effect occurs in the expansion of solid Helium-4 into a vacuum through pinhole orifices with diameters between 1 and 5 µm. It is observed that the beam flux intensity shows a periodic behavior for source conditions corresponding to the solid phase of Helium-4. The period is in the range of seconds up to minutes. It shows a strong dependence on temperature and source pressure. The oscillating part of the beam flux intensity amounts several percent of the total flux. This new phenomenon has been studied for temperatures between 2.1 K and 1.3 K and pressures up to 30 bar above the melting pressure. The beam flux intensity has been recorded by the vacuum pressure in a pitot vacuum chamber. The jet velocity in the range of 200 m/sec indicates that surprisingly the beam is a liquid jet, whereas the conditions in the source correspond to the solid state. In this work mainly the behavior of the flux modulation has been studied as a function of pressure and temperature and the influence of the isotope Helium-3. Furthermore geometrical aspects such as the influence of the nozzle diameter d0 have been investigated. In order to explain this novel phenomenon a kinetic model based on the injection of excess vacancies into the solid is proposed. According to this model the vacancies are generated at a solid/liquid interface. Forced by drift and diffusion they accumulate at some distance from the orifice, leading to the collapse of the solid. With the subsequent re-injection of vacancies the effect repeats and turns out to be periodical. The reproducibility of the time dependent beam flux intensity is demonstrated for a wide range of temperatures and pressures and gives direct access to values such as the temperature and pressure dependence of the vacancy diffusion coefficient Dv in the range of 10 high -5 cm high 2/sec, the recombination time of vacancies with interstitials T r near 1-20 sec and the vacancy activation energy f near 20 K. The good agreement with former experimental results by Zuev et al. [131] confirms the applicability of the theoretical model. As a result from the kinetic model the vacancy concentration is increased above the equilibrium vacancy concentration, caused by the injection of excess vacancies. Therefore, the most important discovery is the possibility of generating a non-equilibrium quantum solid. The investigation of this non-equilibrium solid leads to the discovery of a fluid-like regime in the solid phase of Helium-4 at temperatures below T = 1.58 K. The result gives a strong indication for the supersolid state, especially because the fluid-like behavior of the solid can be eliminated with smallest concentrations of Helium-3.
The development of resistance to multiple drugs is a major problem in treatment of number of infectious diseases and cancer. The phenomenon of multidrug resistance (MDR) is based on the synergetic interplay of a number of mechanisms such as target inactivation, target alteration, prevention of drug influx as well as active extrusion of drugs from the cell. The latter is mediated by over-expression of multidrug efflux pumps. The first discovered and the best characterized until now the human MDR transporter is P-glycoprotein. It is a member of the ATP binding cassette (ABC) superfamily and acts as an active transporter for a variety of anticancer agents using the energy released by ATP hydrolysis. The closest structure and functional homologue of P-glycoprotein found in bacteria is LmrA from Lactococcus lactis. The major goals of this work are to establish the selective isotope labelling of LmrA in Lactococcus lactis, to optimize LmrA sample preparation for solid-state NMR, and finally to perform first solidstate NMR investigations on LmrA shedding light on its catalytic cycle and substrate binding. For a long time the solid-state NMR applications to biological science has been limited to investigation of small molecules mostly. Recently, the solid-state NMR methods have shown potential for structuraland non-perturbing, site directed functional studies of large membrane proteins as well as ligands bound to them. However, to our knowledge neither selective isotope amino acid labelling of any ABC transporter, nor NMR investigations on full-length ABC transporter have been reported to date. Solidstate NMR experiments on a membrane protein require reconstitution of purified proteins into a membrane environment at a high density and either isotopic enrichment of the protein or bound drugs or inhibitors. Therefore, the large quantities of LmrA reconstituted at a high density in lipid membranes, sufficient for advanced NMR studies have been produced and its functional state in reconstituted form has been assessed. In the next step, a procedure for cost effective selective amino acids isotope labelling of LmrA in Lactococcus lactis has been established. Using this protocol deuterium alanine labelled LmrA reconstituted into E. coli liposomes has been prepared. Deuterium NMR has been used extensively to assess the proteins dynamics in past. However, it has never been applied to ABC transporter. Here, we report 2H NMR on selective alanine isotope labelled LmrA which has been used to shed light on the dynamics changes in the protein occurred under AMP-PNP, non-hydrolysable ATP analogue, binding and in ATP/ADP-Vanadate trapped state. It has been found that the major conformation changes affecting the protein motional characteristics occur in the ATP binding domains but not in the transmembrane domains. Additionally, the binding of several substrates to LmrA has been studied by fluorescence spectroscopy as well as by 19F and 31P solid-state NMR. The binding constants for several LmrA substrates have been obtained by fitting the concentration dependant tryptophan intrinsic fluorescence quenching curves. Based on the fluorescence studies and solid-state NMR data, the conformation changes in LmrA under substrate binding have been discussed. In addition, the preferable location of nine LmrA and P-glycoprotein substrates within the model membrane has been studied via 1H-MAS-NOESY-NMR. The results have been interpreted with respect to LmrA and P-glycoprotein binding site accessibility from the membrane interface region.
We develop a proof method to show that in a (deterministic) lambda calculus with letrec and equipped with contextual equivalence the call-by-name and the call-by-need evaluation are equivalent, and also that the unrestricted copy-operation is correct. Given a let-binding x = t, the copy-operation replaces an occurrence of the variable x by the expression t, regardless of the form of t. This gives an answer to unresolved problems in several papers, it adds a strong method to the tool set for reasoning about contextual equivalence in higher-order calculi with letrec, and it enables a class of transformations that can be used as optimizations. The method can be used in different kind of lambda calculi with cyclic sharing. Probably it can also be used in non-deterministic lambda calculi if the variable x is "deterministic", i.e., has no interference with non-deterministic executions. The main technical idea is to use a restricted variant of the infinitary lambda-calculus, whose objects are the expressions that are unrolled w.r.t. let, to define the infinite developments as a reduction calculus on the infinite trees and showing a standardization theorem.
The Na+/proline transporter of E. Coli (PutP) is responsible for the uptake of proline which is subsequently used not only as a carbon and nitrogen source and a constituent of proteins but also as a particularly effective osmoprotectant. However, for a long time there was little known about the single steps in the reaction cycle of this transporter and only few details about its structure-function relationship are available. Aim of the present work was to achieve a deeper understanding about the kinetic properties of the Na+/proline transporter and to get insights into the structure-function relationship of the substrate binding. To answer these questions different techniques were used. By using the novel SSM technique combining the preparation of PutP proteoliposomes it was possible to demonstrate for the first time the electrogenic substrate binding to PutP transporter. Due to rapid solution exchange measurements on the SSM it was additionally possible to obtain time resolved information about the kinetic details of the cytoplasmic substrate binding sites which were not available by previous steady state and equilibrium binding measurements. Pre-steady-state charge translocation was observed after rapid addition of one or both of the cosubstrates Na+ and/or proline to the PutP-WT proteoliposomes adsorbed on the SSM. Thereby it was possible to link the observed electrical signals with the binding activity of PutP. The observed Na+ and/or proline induced charge displacement were assigned to an electrogenic Na+ and/or proline binding process at the cytoplasmic face of the enzyme with a rate constant of k > 50 s-1 proceeding the rate limiting step of the reaction cycle. Furthermore, based on the kinetic analysis of the electrical signals obtained from the measurements of PutP on SSM, the following characteristics of the substrates binding in PutP were deduced: (1) both Na+ and proline can bind individually to the transporter. Under physiological conditions, an ordered binding mechanism prevails; while at sufficiently high concentrations, each substrate can bind in the absence of the other; (2) substrate binding is electrogenic not only for Na+, but also for the uncharged cosubstrate proline. The charge displacement associated with Na+ binding and proline binding is of comparable size and independent of the presence of the respective cosubstrate. In addition, it was concluded that Na+ accesses its binding site through a high-field access channel resulting in a charge translocation, whereas the binding of the electroneutral proline induces a conformation alteration involving the displacement of charged amino acid residue(s) of the protein; (3) Na+ and proline binding sites interact cooperatively with each other by increasing the affinity and/or the speed of binding of the respective cosubstrate; (4) proline binding proceeds in a two step process: low affinity (~ 0.9 mM) electroneutral substrate binding followed by a nearly irreversible electrogenic conformational transition; (5) membrane impermeable PCMBS inhibits both Na+ and proline binding to the inside-out orientated PutP transporter, indicating that rather than selectively blocking a specific binding site, PCMBS probably locks the enzyme in an inactive state. The possible targets for this SH-reagent are cysteines 281 and 344 located close to the cytoplasmic surface of the protein. Beyond it, transient electrical currents of PutP were also observed on the BLM after rapid addition of proline in the presence of Na+. This was possible by combining the conventional BLM technique with high-speed flash-photolysis of caged-proline. Indeed the signals on the BLM indicate the detection of a different underlying reaction process in comparison to the data achieved by the SSM technique. This has paved the way for supplemental information about the reaction cycle since it was possible to assign the flash-photolysis BLM signals to the proline binding step followed by the internalization of Na+ and proline into the liposome. Thereby it was found, that the presence of Na+ is indispensable and the time constant for the process is ~ 63 ms. Moreover, structure-function information about the Na+ and proline binding sites of PutP was obtained by investigating the functionally important amino acid residues Asp55, Gly63 and Asp187 with site-directed mutagenesis and the combined SSM technique. One finding is that the mutated proteins PutP-D55C and PutP-G63C showed no activity on the SSM. Therefore, it can be assumed that either both Asp55 and Gly63 are crucial for the structure of PutP protein, or they are located at or close to the Na+ and proline binding sites. Furthermore, the results obtained from PutP-D187N and PutP-D187C mutants on SSM suggest that Asp187 of PutP is likely to be involved in the Na+ binding at the cytoplasmic side of the backward running carrier. Taken together the results of the present work have substantially broadened the known picture of the Na+/proline transporter PutP thereby several steps of the reaction cycle were elucidated, and moreover, valuable insights into the structure-function relationship of the transporter have become available.
The technique of site-specific fluorescence labelling with Tetramethylrhodaminemaleimide (TMRM) in combination with two electrode voltage-clamp technique (TEVC), an approach that has been named voltage clamp fluorometry (VCF), has been used in this work to study the Na,K-ATPase. The TMRM dye has the ability to attach covalently to cysteine residues and it responds to changes in the hydrophobicity of its local environment. We exploited this property using a construct of the Na-pump in which the native, extracellularly accessible cysteines were removed and cysteine residues were introduced by site-directed mutagenesis in specific positions of the Na-pump. In this way it was possible to detect site-specific conformational rearrangements of the Na-pump in a time-resolved fashion within a native membrane environment. In particular this technique allows to resolve reactions with low electrogenicity that cannot be satisfactorily analyzed with purely electrophysiological techniques and to identify the conformations of the enzyme under specific ionic composition of the measuring buffers. We used VCF to study the influence that several cations like Na+, K+, NMG+, TEA+ and BTEA+ exert on the distribution of the Na,K-ATPase between several enzymatic intermediates and on some of the reactions related to cation transport. To this end we utilized the mutants N790C in the loop M5-M6 and the mutant E307C, T309C, L311C and E312C in the loop M3-M4. From the correspondence of the fluorescence changes with the activation and inhibition of pumping current, by K+ and ouabain respectively, and from the fact that in Na+/Na+ exchange conditions the voltage distribution of charge movement and fluorescence changes evoked by voltage jumps are in reasonable agreement we conclude that through the fluorescence signals measured from these mutants, we can indeed monitor conformational changes linked to transport activity of the enzyme. For the mutants N790 and L311, it was found that the Na+ dependence of the amplitude and kinetics of the fluorescence signal associated with the E1P-E2P transition is in agreement with the prediction of an access channel model describing the regulation of the access of extracellular Na+ to its binding site. In particular for the mutants E307 and T309 it was found that in Na+/Na+ exchange conditions, the conformational change tracked by the fluorescence was much slower than the charge relaxation at hyperpolarized potentials while the kinetics was very similar at depolarized potentials. This implies that at hyperpolarized potentials the conformational change connected to the E1P-E2P transition does not give a large contribution to the electrogenicity of the process which is also consistent with the access channel model. On the mutant N790C it was found that the external pH does not seem to have any effect on the E1P-E2P equilibrium even if it seems to modulate the fluorescence quantum yield of the dye. Fluorescence quenching experiments with iodide and D2O indicate that at hyperpolarized potentials the local environment of the mutant N790C, experiences a small change in the accessibility to water without major changes in the local electrostatic field ...