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Alzheimer’s disease (AD) is a common, age associated neurodegenerative disease that manifests as progressive dementia and is characterized by accumulation of the amyloid beta (Aβ) peptide which is a processing product of a transmembrane protein termed Alzheimer Amyloid Precursor Protein (APP). The Aβ peptide is generated by a sequential proteolytic processing of APP by two distinct proteases that are termed β- and γ-secretase. The β-secretase, also called BACE-1 or memapsin 2, belongs to the family of aspartyl proteases. BACE-1 evidently cleaves APP in an acidic endosomal compartment after endocytosis of APP, thereby facilitating Aβ peptide generation.
Sorting of transmembrane proteins is generally controlled by sorting signals in the cytoplasmic domains of the cargo proteins. The short cytoplasmic tail of BACE-1 with 23 amino acids contains a sorting signal of the acidic cluster, di-leucine (ACDL) type. The two Leu residues in this determinant are important for the clathrin mediated endocytosis of BACE-1, whereas the acidic residues together with the Leu are required for the endosomal sorting and recycling of BACE-1 back to the plasma membrane. The ACDL motif binds to the members of the GGA (Golgi-localized γ ear-containg ARF- binding proteins) family (GGA1-GGA3) that are involved in the sorting of BACE-1.
One of the major aims of this study was to address the role of flotillins in the intracellular sorting of BACE-1. This study shows that flotillin-1 directly binds to the di-leucine motif in the cytoplasmic tail of BACE-1, whereas flotillin-2 only shows an association mediated by flotillin-1. Flotillin-1 competes with GGA2 for the binding to BACE-1 tail, and thus influences the endosomal sorting of BACE-1. Importantly, depletion of flotillins results in an altered localization of the wildtype BACE-1, whereas the plasma membrane resident Leu to Ala (LLAA) mutant is not affected. Flotillin knockdown results in an accumulation of BACE-1, implicating reduced degradation and enhanced stability of this protease. Thus, flotillins appear to be important for the cellular targeting of BACE-1 and also influence the amyloidogenic processing of APP, as demonstrated by an increase in the amyloidogenic C-99 processing fragments.
When flotillin depleted cells were subjected to apoptotic stresses including Aβ25-35 synthetic peptide (inducer of the extrinsic apoptosis pathway) or several chemotherapeutic agents (staurosporine, brefeldin A, doxorubicin, carboplatin and paclitaxel: intrinsic apoptosis pathway) and cytotoxicity was determined, various apoptotic markers were activated in flotillin depleted cells. Caspase-3 and GGA3 are well accepted apoptosis markers and an enhanced caspase-3 cleavage was detected upon STS induced apoptosis in SH-SY5Y, HeLa, and HaCaT cell lines and increased GGA3 cleavage was observed in MCF7 cell line.
One of the major reasons for the apoptotic sensitivity in the absence of flotillins was a PI3K/Akt signaling defect. Neuroblastoma cells depleted of flotillins showed diminished levels of total Akt, phospho-Akt and phospho-ERK upon STS induced apoptosis. Since PI3K/Akt was the primary survival pathway affected upon STS induced apoptosis, ectopic expression of Akt in neuroblastoma cell line reduced caspase-3 cleavage and retarded apoptosis.
The direct downstream target of Akt is FOXO3a, whose localization was investigated in flotillin depleted cells. A major proportion of FOXO3a was localized in the nucleus of flotillin knockdown cells, implicating that FOXOs are active in these cells and subsequently trigger the transcription of death genes. Strikingly, an essential anti-apoptotic molecule and a major cancer target, Mcl-1, was inherently downregulated in flotillin knockdown cells. Mcl-1 is a chief member of the Bcl-2 family as it plays a pivotal role in cell survival and it is a critical protein in cancer therapeutics as suppression of Mcl-1 protein can curtail the survival and growth of tumorous cells.
Neuroblastoma cells were rescued from undergoing permanent damage due to STS induced apoptosis by overexpression of anti-apoptotic Bcl-2. Phorbol esters are well known PKC activators, and pre-treatment of neuroblastoma cells with phorbol esters along with staurosporine reduced caspase-3 cleavage.
These results demonstrate that absence of flotillins can sensitize cellular systems to apoptosis induction. The two main characteristics of cancer cells include resistance to apoptosis and unresponsiveness to chemotherapeutic agents. It is a well established fact that impaired apoptosis is central to tumour development. This study implicates that the downregulation of flotillin function can trigger cellular susceptibility and enhances apoptosis in response to conventional chemotherapeutic agents. Therefore, flotillins can serve as vital regulators in providing a more rational approach in molecular-targeted therapies for receding cancer growth and survival.
5-lipoxygenase (5-LO) is an enzyme with a substantial role in inflammatory processes. In vitro kinase assays using [32P]-ATP in combination with mutagenesis have revealed that serine residues 271, 523 and 663 can be phosphorylated by MK2, PKA and ERK2 kinases, respectively. A few available reports regarding 5-LO protein sequence have covered up to 30% of the sequence after amino acid sequencing including Ser663. In LCMS/MS analyses of 5-LO tryptic digests from different cellular sources different peptides have been detected; however, none of the three phosphorylations has been detected and only Ser663 was included in the covered sequence.
As there was no comprehensive mass spectrometric analysis of 5-LO, the purpose of this study was to optimize the experimental conditions under which detection of the aforementioned phosphorylation events, as well as other possible post-translational modifications (PTMs), would be feasible. Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry (MALDI-MS) was used for peptide analysis of 5-LO cleaved either by chemical reagents or by proteases. Sequence coverage of 5-LO could be enhanced to be close to completion by combination of results from digestions by trypsin, AspN and chymotrypsin. In-gel trypsin digestion followed by in-solution AspN digestion proved to be a useful sample treatment for reproducible detection of the Ser271-containing peptide.
Nevertheless, in none of the examined cleavage protocols the sequence around Ser523 was detected reproducibly or with acceptable signal intensity for subsequent peptide fragmentation. Propionic anhydride and sulfo-NHS-SS-biotin cross-linker (EZ-linkTM), were used for derivatization of lysine side chains and hindrance of lysine residue recognition by trypsin. Phosphopeptide enrichment became possible after tryptic digestion of these samples, not only due to formation of an individual Ser523-containing peptide, but also because TiO2-mediated enrichment, which is performed in acidic pH, was not impaired by positively charged free lysine side chains. Additionally, biotinylation of lysine residues was exploited for an intermediate enrichment step of the lysine containing peptides, prior to TiO2 phosphopeptide enrichment.
MALDI-MS analysis after in-vitro phosphorylation of 5-LO by the three kinases showed that Ser271 was phosphorylated in the MK2 and PKA kinase assays, while Ser523 was phosphorylated only in the PKA kinase assay. Surpisingly, no phosphopeptides were detected in the in-vitro kinase assays with ERK2, even though the unmodified counterpart of the Ser663-containing peptide was easily detected. The detection limit for each of the three phosphorylation sites was determined by the use of custom made phosphopeptides and an amount of 0.06 pmol of phosphopeptide in 1 μg 5-LO (representing 0.5% phosphorylation rate) was sufficient in all cases for successful enrichment and detection by MS.
In-vitro kinase assays with [32P]-ATP were performed for some kinases that were expected to phosphorylate 5-LO according to in-silico data. Three members of the Src tyrosine kinase family (Fgr, Hck and Yes) and the Ser/Thr specific kinase DNA-PK used 5-LO as their substrate and mainly residues at the N-terminal part of 5-LO were detected phosphorylated by MS (e.g. Y42, Y53). Additional in-vitro assays for recombinant 5-LO modification included incubation with glutathione or compound U73122, previously described as inhibitor of 5-LO.
Since in-vitro assays might have generated artifacts, a method for 5-LO purification from human cells was sought, in order to examine the modification state of the protein in the cellular context. ATP-agarose affinity purification and anti-5-LO immunoprecipitation proved inappropriate for sample purification for MALDI-MS analysis. Consequently, two human cell lines that are able to express 5-LO (Rec-1 Blymphocytes and MM6 monocytes) were transduced with a DNA cassette that contained recombinant human 5-LO sequence with an attached N-terminal FLAG-tag. Anti-FLAG immunoprecipitation was then performed effectively in cell lysates and the precipitated FLAG-5-LO was separated by SDS-PAGE before MALDI-MS analysis.
The examined cell stimuli were expected to result to phosphorylation of 5-LO at Ser523 by PKA in Rec-1 cells and to phosphorylation of Ser271 and/or Ser663 in MM6 cells by activated MK2 and ERK2, respectively. Additionally, under the conditions of MM6 cell stimulation, Fgr, Hck and Yes kinases, which phosphorylated 5-LO in vitro, were expected to be activated and the possibility of 5-LO phosphorylation on tyrosine was investigated. Although immunoblotting results indicated that all the aforementioned phosphorylation events existed in the examined samples, MALDI-MS analysis verified only phosphorylation on Ser271 in differentiated MM6 cells, interestingly regardless of cell stimulation.
Finally, the primary amine derivatization procedure by EZ-linkTM was utilized for MS analysis of lysine rich proteins. In the past, chemical propionylation of histones had been employed prior to trypsin digestion; however it was easily confused in MS with combinations of other PTMs (e.g. acetylation, methylation). Moreover, propionylation is a PTM for histone H3 and this information was lost. Consequently, the EZ-link reagent was more useful for analysis of histones, as unambiguous assignment of PTMs and detection of native propionylation on bovine H3 became possible.
Low-energy effective models for two-flavor quantum chromodynamics and the universality hypothesis
(2014)
Die Untersuchung der Natur auf extremen Längenskalen hat seit jeher zu bahnbrechenden Einsichten und Innovationen geführt. Insbesondere zu unserem heutigen Verständnis, dass Nukleonen (Protonen und Neutronen) aus Quarks zusammengesetzt sind, die infolge der starken Wechselwirkung, vermittelt durch Gluonenaustausch, gebunden sind. Mit dem Aufkommen des Quarkmodells wurde bald die Quantenchromodynamik (QCD) erfolgreich in der Beschreibung vieler messbarer Eigenschaften der starken Wechselwirkung. Um es mit Goethe zu sagen: mit den modernen Hochenergie-Beschleuniger-Experimenten wird versucht unser Verständnis davon zu verbessern, was die Welt im Innersten zusammenhält. Am Large Hadron Collider (LHC) werden beispielsweise Protonen derart beschleunigt und miteinander zur Kollision gebracht, dass bislang unerreichte Energiedichten auftreten, infolge derer Temperatur und baryochemisches Potential Werte annehmen, die mit denen des frühen Universums vergleichbar sind. Es gibt sowohl theoretische als auch experimentelle Hinweise darauf, dass hadronische Materie mit zunehmender Temperatur und/oder zunehmendem baryochemischen Potentials einen Phasenübergang durchläuft, hin zu einem exotischen Zustand, der als Quark-Gluon-Plasma bekannt ist. Dieser Übergang wird begleitet von einem sogenannten chiralen Übergang. Es ist eine wichtige Frage, ob es sich bei diesem chiralen Übergang um einen echten Phasenübergang (von erster bzw. zweiter Ordnung) handelt, oder ob ein sogenannter crossover vorliegt. Einige Resultate deuten auf einen crossover für verschwindendes baryochemisches Potential und einen Phasenübergang erster Ordnung für verschwindende Temperatur hin, lassen jedoch noch keinen endgültigen Schluss zu, ob dies tatsächlich der Realität entspricht. Wenn ja, so liegt die Annahme nahe, dass ein kritischer Endpunkt existiert, an dem der chirale Übergang von zweiter Ordnung ist. In der Tat existiert ein kritischer Endpunkt in einigen theoretischen Zugängen zur Beschreibung des chiralen Phasenübergangs, deren Aussagekraft seit jeher lebhaft diskutiert wird. Ein zentrales Ziel des zukünftigen CBM-Experiments an der GSI in Darmstadt ist es, die Existenz im Experiment zu überprüfen.
In der Nähe des QCD-(Phasen)übergangs ist es die Abwesenheit jeglicher perturbativer Entwicklungsparameter, die exakte analytische Berechnungen verbietet. Das gleiche gilt für realistische effektive Modelle für QCD. Nichtperturbative Methoden sind daher unverzichtbar für die Untersuchung des QCD-Phasendiagramms. Zu den populärsten dieser Zugänge gehören Gitter-QCD, Resummierungsverfahren, der Dyson-Schwinger-Formalismus, sowie die Funktionale Renormierungsgruppe (FRG). All diese Methoden ergänzen sich gegenseitig und werden zum Teil auch miteinander kombiniert. Eine der Stärken der FRG-Methode ist, dass sie nicht nur erfolgreich auf effektive Modelle angewendet werden kann, sondern auch auf QCD selbst. Für letztere Ab-Initio-Rechnungen sind die aus effektiven Modellen für QCD gewonnenen Resultate von grossem Wert.
Der Schwerpunkt der vorliegenden Arbeit liegt auf der Fragestellung von welcher Ordnung der chirale Phasenübergang im Fall von genau zwei leichten Quarksorten ist. Problemstellungen wie die Suche nach einer Antwort auf die Frage nach den Bedingungen für die Existenz eines Phasenübergangs zweiter Ordnung, die Bestimmung der Universalitätsklasse in diesem Fall etc. erfordern Wissen aus verschiedenen Gebieten.
Kapitel 1 besteht aus einer allgemeinen Einleitung.
In Kapitel 2 stellen wir zunächst einige allgemeine Aspekte von Phasenübergängen dar, die von besonderer Relevanz für das Verständnis des Renormierungsgruppen-Zugangs zu ebendiesen sind. Unser Fokus liegt hierbei auf einer kritischen Untersuchung der Universalitätshypothese. Insbesondere die Rechtfertigung des linearen Sigma-Modells als effektive Theorie für den chiralen Ordnungsparameter beruht auf der Gültigkeit selbiger.
Kapitel 3 beschäftigt sich mit dem chiralen Phasenübergang von einem allgemeinen Standpunkt aus. Wir ergünzen wohlbekannte Fakten durch eine detaillierte Diskussion der sogenannten O(4)-Hypothese. Die Überprüfung der Gültigkeit selbiger wird schließlich in Kapitel 6 und 7 in Angriff genommen.
In Kapitel 4 stellen wir die von uns benutzte FRG-Methode vor. Außerdem diskutieren wir den Zusammenhang zwischen effektiven Theorien für QCD und der QCD selbst.
Kapitel 5 behandelt ein mathematisches Thema, das für alle unserer Untersuchungen unabdingbar ist, nämlich die systematische Konstruktion polynomialer Invarianten zu einer gegebenen Symmetrie. Wir präsentieren einen einfachen, jedoch neuartigen, Algorithmus für die praktische Konstruktion von Invarianten einer gegebenen polynomialen Ordnung.
Kapitel 6 widmet sich Renormierungsgruppen-Studien einer Reihe dimensional reduzierter Theorien. Von zentralem Interesse ist hierbei das lineare Sigma-Modell, insbesondere in Anwesenheit der axialen Anomalie. Es stellt sich heraus, dass die Fixpunkt-Struktur des letzteren vergleichsweise kompliziert ist und ein tieferes Verständnis der zugrundeliegenden Methode sowie ihrer Annahmen erfordert. Dies führt uns zu einer sorgfältigen Analyse der Fixpunkt-Struktur von Modellen verschiedenster Symmetrien. Im Zusammenhang mit der Untersuchung des Einflusses von Vektor- und Axial-Vektor-Mesonen stoßen wir hierbei auf eine neue Universalitä}tsklasse.
Während wenig Spielraum für die Wahl der Symmetriegruppe der effektiven Theorie für den chiralen Ordnungsparameter besteht, ist die Identifizierung der Ordnungsparameter-Komponenten mit den relevanten mesonischen Freiheitsgraden hochgradig nichttrivial. Diese Wahl entspricht der Wahl einer Darstellung der Gruppe und kann zur Zeit nicht eindeutig aus der QCD hergeleitet werden. Es ist daher unerlässlich, verschiedene Möglichkeiten auszutesten. Eine wohlbekannte Wahl besteht darin, das Pion und seinen chiralen Partner, das Sigma-Meson, der O(4)-Darstellung für SU(2)_A x SU(2)_V zuzuordnen, welche einen Phasenübergang zweiter Ordnung erlaubt. Dieses Szenario ist jedoch nur dann sinnvoll, wenn nahe der kritischen Temperatur alle anderen Mesonen entsprechend schwer sind. Im Fall von genau zwei leichten Quarkmassen erfordert dies eine hinreichend große Anomaliestärke. Berücksichtigt man zusätzlich zum Pion und Sigma-Meson auch das Eta-Meson und das a_0-Meson, liefern unsere derzeitigen expliziten Rechnungen keinen Nachweis für die Existenz eines Phasenübergang zweiter Ordnung. Stattdessen spricht die Abwesenheit eines physikalischen (hinsichtlich der Massen) infrarot-stabilen Fixpunktes für einen fluktuationsinduzierten Phasenübergang erster Ordnung. Dieses Ergebnis ist auch zu erwarten (jedoch nicht impliziert), allein durch die Existenz zweier quadratischer Invarianten. Es besteht jedoch immer noch eine hypothetische Chance auf einen Phasenübergang zweiter Ordnung in der SU(2)_A x U(2)_V -Universalitätsklasse. Dies wäre der Fall, wenn der entsprechende von uns gefundene unphysikalische infrarot-stabile Fixpunkt physikalisch werden sollte in höherer Trunkierungsordnung. Interessanterweise finden wir bei endlicher Temperatur für gewisse Parameter einen Phasenübergang zweiter Ordnung. Es ist unklar, ob diese Wahl der Parameter in den Gültigkeitsbereich der dimensional reduzierten Theorie fällt.
Erst vor kurzem (Ende September 2013) wurde die Existenz eines infrarot-stabilen U(2)_A x U(2)_V-symmetrischen Fixpunkts durch Pelissetto und Vicari verifiziert (die zugehörige anomale Dimension ist mit 0.12 angegeben). Dieses Resultat war sehr
überraschend, da für zwei leichte Quarksorten und abwesende Anomalie ein Phasenübergang erster Ordnung relativ gesichert erschien, insbesondere durch die Epsilon-Entwicklung. Offensichtlich versagt letztere jedoch im Limes D=3, also für drei räumliche Dimensionen, da lediglich Fixpunkte gefunden werden können, die auch nahe D=4 existieren. Inspiriert durch diesen wichtigen Fund führen wir eine FRG-Fixpunktstudie in lokaler Potential-Näherung und hoher Trunkierungsordnung (bis zu zehnter Ordnung in den Feldern) durch. Die Stabilitätsanalyse besitzt jedoch leider keine Aussagekraft, da die Stabilitätsmatrix für den Gaußschen Fixpunkt marginale Eigenwerte besitzt. Wir sind überzeugt davon, dass dies nicht mehr der Fall ist, wenn man über die lokale Potential-Näherung hinausgeht und eine nichtverschwindende anomale Dimension zulässt. Die bisherigen Resultate verdeutlichen die Limitierungen der lokalen Potential-Näherung und der Epsilon-Entwicklung, auf denen unsere Untersuchungen zur Universalitätshypothese in weiten Teilen beruhen. Systematische Untersuchungen der Fixpunktstruktur von Modellen mit acht Ordnungsparameter-Komponenten wurden in der Literatur im Rahmen der Epsilon-Entwicklung durchgeführt und im Rahmen dieser Dissertation innerhalb der lokalen Potential-Näherung. Die meisten der Vorhersagen der Epsilon-Entwicklung konnten bestätigt werden, einige hingegen werden in Frage gestellt durch das Auftauchen marginaler Stabilitätsmatrix-Eigenwerte.
Einige wichtige Fragestellungen können nicht im Rahmen einer dimensional reduzierten Theorie behandelt werden, da die explizite Temperaturabhängigkeit in diesem Fall eliminiert wurde.
Insbesondere ist es in diesem Fall nicht möglich, die Stärke eines Phasenübergangs erster Ordnung vorherzusagen, da diese von Observablen (Meson-Massen und die Pion-Zerfallskonstante im Vakuum) abhängen, an die man bei verschwindender Temperatur fitten muss. Dieser Umstand führt uns zu solchen FRG-Studien, in denen die Temperatur als expliziter Parameter verbleibt.
Ein beträchtlicher Teil der für die vorliegende Dissertation zur Verfügung stehenden Arbeitszeit wurde darauf verwendet, eigene Implementierungen geeigneter Algorithmen zur numerischen Lösung der auftretenden partiellen Differentialgleichungen zu finden. Exemplarische Routinen (welche ausschließlich wohlbekannte Methoden nutzen) sind in einem Anhang zur Verfügung gestellt. Das Hauptziel der vorliegenden Arbeit, die Anwendung auf effektive Modelle für QCD, wird in Kapitel 7 präsentiert. Unsere (vorläufigen) FRG-Studien des linearen Sigma-Modells mit axialer Anomalie bei nichtverschwindender Temperatur erlauben verschiedene Szenarien. Sowohl einen extrem schwach ausgeprägten, als auch einen sehr deutlichen Phasenübergang erster Ordnung, ganz abhängig von der Wahl der Ultraviolett-Abschneideskala und oben genannter Parameter. Sogar ein Phasenübergang zweiter Ordnung scheint möglich für gewisse Parameterwerte. Um verlässliche Schlussfolgerungen zu ziehen, sind weitere Untersuchungen nötig und bereits im Gange. In Kapitel 7 verifizieren wir außerdem bereits bekannte numerische Resultate für das Quark-Meson-Modell.
Die Dissertation besteht aus drei thematisch zusammenhängenden Forschungspapieren, in denen zeitstetige Konsum-, Investment- und Versicherungsprobleme über den Lebenszyklus betrachtet werden. Ein besonderer Fokus liegt auf realistischen Features wie stochastischem Sterberisiko und nicht-replizierbarem Einkommen. In der ersten Forschungsarbeit untersuche ich die Relevanz von stochastischem Sterberisiko. Dabei zeige ich, dass eine Sprungkomponente in der Sterberate die optimalen Entscheidungen der Agenten und das Wohlfahrtslevel signifikant beeinflusst. Eine Diffusionskomponente ist hingegen vernachlässigbar. In dem zweiten Forschungspapier untersuchen wir die Risikolebensversicherungsnachfrage einer Familie, dessen Alleinverdiener stochastischem Sterberisiko ausgesetzt ist. Wir achten insbesondere auf eine realistische Modellierung der Versicherung. Wir zeigen, dass dadurch junge Agenten dem Versicherungsmarkt fern bleiben und die Versicherungsnachfrage mit dem Alter steigt, im Gegensatz zu Modellen mit einfachen stetig-veränderbaren Versicherungen. Weiterhin verstärken langlaufende Versicherungsverträge die negativen Effekte von Einkommensschocks und werden daher von risikoaversen Agenten weniger abgeschlossen. In der dritten Forschungsarbeit untersuche ich die Critical Illness Versicherungsnachfrage eines Agenten in einem Modell mit stochastischem Sterberisiko und Gesundheitsausgaben. Die Versicherung übernimmt dabei die zusätzlichen Gesundheitskosten, die bei einem Sprung entstehen. Fast alle Agenten schließen solch eine Versicherung vor dem Rentenalter ab, selbst wenn diese sehr kostspielig ist. Insbesondere Agenten mit geringen Gesundheitsausgaben und hohem Einkommen haben eine hohe Versicherungsnachfrage.
Tumor development usually follows predictable paths where tumor cells acquire common characteristics and features known as the hallmarks of cancer. Recently, additional characteristics have been added to these hallmarks since solid tumors are composed of a very heterogeneous population of transformed, formerly normal tissue cells and stromal cells, e.g. immune cells and fibroblasts. Compelling evidence suggests that stromal cells and tumor cells maintain a symbiotic relationship to build up the tumor microenvironment and to fuel tumor growth. In cancer therapies, common features of tumors such as unrestricted cell growth, suppression of immunological responses, and the ability to form new blood vessels (angiogenesis) have emerged as the main targets of interest. The lipid mediator prostaglandin E2 (PGE2) is known to promote all these features and thus, is connected to cancer progression in general. Its synthesis is triggered in response to stress factors or during inflammation. Inducible PGE2 production relies on the enzymes cyclooxygenase 2 (COX-2) and microsomal prostanglandin E synthase 1 (mPGES-1), which are simultaneously expressed in response to a variety of different stimuli and are functionally coupled. Inhibition of COX-2 with non-steroidal antiinflammatory drugs (NSAIDs) for cancer treatment is, however, limited by cardiovascular risks, since selective COX-2 inhibition disrupts the prostacyclin/thromboxane balance. Therefore targeting mPGES-1 downstream of COX-2 for PGE2 inhibition was evaluated in this work in different steps of carcinogenesis. Knockdown of mPGES-1 in DU145 prostate cancer cells revealed that the mPGES-1 status did not affect growth of monolayer tumor cells, but significantly impaired 3D growth of multi-cellular tumor spheroids (MCTS). Spheroid formation induced COX-2 in DU145 and other prostate cancer spheroids. High levels of PGE2 were detected in supernatants of DU145 MCTS as opposed to monolayer DU145 cells. Pharmacological inhibition of COX-2 and mPGES-1 confirmed the pivotal role of PGE2 for DU145 MCTS growth. Besides promoting spheroid growth, MCTS-derived PGE2 also inhibited cytotoxic T lymphocyte (CTL) activation. When investigating the mechanisms of COX-2 induction during spheroid formation, the typical tumor microenvironmental factors such as glucose deprivation, hypoxia or tumor cell apoptosis failed to enhance COX-2. Interestingly, when interfering with apoptosis in DU145 spheroids, the pan-caspase inhibitor Z-VAD-FMK triggered a Summary 12 shift towards necrosis, thus enhancing COX-2 expression. Coculturing viable DU145 monolayer cells with isolated heat-shocked-treated necrotic DU145 cells, but not with necrotic cell supernatants, induced COX-2 and PGE2, confirming the impact of necrosis for MCTS growth and CTL inhibition. As mentioned, in vivo tumors are very heterogenous mixtures of tumor cells and stromal cells e.g. immune cells. Hence, the interaction of the immune system with tumors was investigated in further experiments. When coculturing MCF-7 breast cancer spheroids with human peripheral blood mononuclear cells (PBMCs), only low levels of PGE2 were detected, since MCF-7 cells did not upregulate COX-2 during spheroid formation and did not induce PGE2 production by PBMCs. Under inflammatory conditions, by adding the toll-like receptor 4 (TLR4) agonist lipopolysaccharide (LPS) to cocultures, PGE2 production was triggered, spheroid sizes were reduced, and numbers of high levels of granzyme B expressing (GrBhi) CTLs were increased, while CD80 expression by tumor-associated phagocytes was also elevated. Inhibition of CD80 but not CD86 diminished numbers of GrBhi CTLs and attenuated spheroid lysis. To determine the role of ctivation-induced PGE2 production, use of the COX-2 inhibitor celecoxib and the experimental mPGES-1 inhibitor C3 further increased CD80 expression. Addition of PGE2, the prostaglandin E2 (EP2) receptor agonist butaprost, and the phosphodiesterase 4 (PDE4) inhibitor rolipram reduced LPS/C3-triggered CD80 expression, confirming the impact of COX- 2/mPGES-1-derived PGE2 on shaping phagocyte phenotypes in an EP2/cAMP-dependent manner. In a spontaneous breast cancer model (MMTV-PyMT), mPGES-1-deficiency significantly delayed tumor growth in mice, confirming an overall protumorigenic role of mPGES-1 in breast cancer development in vivo. However in tumors of mPGES-1-/- mice, tumor-infiltrating phagocytes expressed low levels of CD80 similar to their wildtype counterparts. These data suggest that the immunosuppressive microenvironment does not allow for immunostimulatory effects by mPGES-1 inhibition without an activating stimulus. Evidences in this study recommend the application of mPGES-1 inhibitors for treating cancer diseases, since mPGES-1 promotes tumor growth in multiple steps of carcinogenesis, ranging from well-characterized effects of tumor cell growth to immune suppression of CTL activity and phagocyte polarization. Regarding the latter, blunting PGE2 during immune activation may limit the tumor-favoring features of inflammation and improve the efficiency of TLR4 based immune therapies.
This thesis is structured into 7 chapters:
• Chapter 2 gives an overview of the ultrashort high intensity laser interaction with matter. The laser interaction with an induced plasma is described, starting from the kinematics of single electron motion, followed by collective electron effects and the ponderamotive motion in the laser focus and the plasma transparency for the laser beam. The three different mechanisms prepared to accelerate and propagate electrons through matter are discussed. The following indirect acceleration of protons is explained by the Target Normal Sheath Acceleration (TNSA) mechanism. Finally some possible applications of laser accelerated protons are explained briefly.
• Chapter 3 deals with the modeling of geometry and field mapping of magnetic lens. Initial proton and electron distributions, fitted to PHELIX measured data are generated, a brief description of employed codes and used techniques in simulation is given, and the aberrations at the solenoid focal spot is studied.
• Chapter 4 presents a simulation study for suggested corrections to optimize the proton beam as a later beam source. Two tools have been employed in these suggested corrections, an aperture placed at the solenoid focal spot as energy selection tool, and a scattering foil placed in the proton beam to smooth the radial energy beam profile correlation at the focal spot due to chromatic aberrations. Another suggested correction has been investigated, to optimize the beam radius at the focal spot by lens geometry controlling.
• Chapter 5 presents a simulation study for the de-neutralization problem in TNSA caused by the fringing fields of pulsed magnetic solenoid and quadrupole. In this simulation, we followed an electrostatic model, wherethe evolution of both, self and mutual fields through the pulsed magnetic solenoid could be found, which is not the case in the quadrupole and only the growth of self fields could be found. The field mapping of magnetic elements is generated by the Matlab program, while the TraceWin code is employed to study the tracking through magnetic elements.
• Chapter 6 describes the PHELIX laser parameters at GSI with chirp pulse amplification technique (CPA), and Gafchromic Radiochromic film RCF) as a spatial energy resolver film detector. The results of experiments with laser proton acceleration, which were performed in two experimental areas at GSI (Z6 area and PHELIX Laser Hall (PLH)), are presented in section 6.3.
• Chapter 7 includes the main results of this work, conclusions and gives a perspective for future experimental activities.
Die zentralen Objekte der Dissertation sind Translationsflächen. Dabei handelt es sich um Riemann’sche Flächen, die aus in die euklidische Ebene eingebetteten Polygonen durch Verkleben von parallelen gleichlangen Seiten entstehen. Zwei Translationsflächen sind gleich, wenn es möglich ist, die Polygone durch ”Zerschneiden und mittels Translationen neu Zusammenkleben“ ineinander zu überführen. Die Gruppe GL_2(R) operiert auf der Menge der Translationsflächen via der linearen Abbildungen auf den Polygonen. Der Stabilisator einer Translationsfläche X unter dieser Operation wird die Veech-Gruppe von X genannt und mit SL(X) bezeichnet. Die Veech-Gruppe ist eine diskrete Untergruppe von SL_2(R) und damit eine Fuchs’sche Gruppe.
Fuchs’sche Gruppen werden je nach ihrer Limesmenge in elementare und nicht-elementare Gruppen eingeteilt. Letztere wiederum unterteilt man in Gruppen erster oder zweiter Art. Fuchs’sche Gruppen mit endlichem co-Volumen heißen Gitter und sind genau die endlich erzeugten Gruppen erster Art. Translationsflächen, deren Veech-Gruppe ein Gitter ist, heißen Veech-Flächen und sind von besonderem Interesse, da für sie die Veech Alternative gilt.
Ein feineres Maß für die Größe einer Fuchs’schen Gruppe ist der kritische Exponent. Er ist definiert als das Infimum aller reellen Zahlen, für die die Poincaré Reihe konvergiert und liegt für alle unendlichen Fuchs’schen Gruppen zwischen 0 und 1. Hauptziel der Dissertation ist der Beweis von Theorem 1. Es gibt Translationsflächen, für die der kritische Exponent ihrer Veech-Gruppe echt zwischen 1/2 und 1 liegt.
Der kritische Exponent von elementaren Gruppen ist höchstens 1/2, Translationsflächen mit elementaren Veech-Gruppen sind also als Kandidaten für das Theorem ausgeschlossen. Der kritische Exponent von Gittern ist 1. Also scheiden auch Veech-Flächen für das Theorem aus.
Bis zum Jahr 2003 waren Gitter die einzigen bekannten nicht-elementaren Veech-Gruppen. McMullen klassifizierte die Veech-Flächen vom Geschlecht 2 und zeigte, dass jede solche Fläche, die nur eine Singularität besitzt, in der GL_2(R)-Bahn der Fläche L_D liegt, die aus einem L-förmigen Polygon mit geeigneten von D abhängigen Seitenlängen entsteht.
Während auch heute noch keine Translationsfläche mit Veech-Gruppe zweiter Art bekannt ist, fanden McMullen und unabhängig davon Hubert und Schmidt Konstruktionen unendlich erzeugter Veech-Gruppen erster Art. Eine Abschätzung des kritischen Exponenten dieser Gruppen war 10 Jahre lang eine wichtige offene Frage, die nun durch Theorem 1 beantwortet wird.
Zentral in der Konstruktion von Hubert und Schmidt sind spezielle Punkte, nämlich Verbindungspunkte. Hubert und Schmidt konstruieren Translationsflächen, deren Veech-Gruppen kommensurabel zum Stabilisator SL(X;P) von P sind und damit den gleichen kritischen Exponenten haben. Für Verbindungspunkte mit unendlicher SL(X)- Bahn (diese Punkte heißen nicht-periodisch) ist SL(X;P) unendlich erzeugt und von erster Art.
Wir zeigen Theorem 1, indem wir zeigen, dass für jedes D kongruent 0 mod 4, (kein Quadrat), und jeden nicht-periodischen Verbindungspunkt P in L_D der kritische Exponent der Gruppe SL(L_D;P) echt zwischen 1/2 und 1 liegt.
Eine natürliche Frage in diesem Zusammenhang ist die Abhängigkeit von P: Punkte Q in der SL(L_D)-Bahn von P sind auch er nicht-periodische Verbindungspunkte und die zugehö̈rigen Gruppen SL(L_D;P) und SL(L_D;Q) sind konjugiert zueinander. Daher widmen wir uns in Kapitel 4 der Bestimmung der Bahnen nicht-periodischer Verbindungspunkte.
Die Verbindungspunkte haben die Form P=(x_r+x_iw;y_r+y_iw) mit x_r,x_i,y_r,y_i aus Q. Wir zeigen, dass der Hauptnenner N(P) dieser (gekürzten) Brüche eine Invariante der Bahn ist. Daraus folgt:
Theorem 2. Es gibt unendlich viele verschiedene Bahnen von Verbindungspunkten von L_D.
Wir kennen die Operation der horizontalen und der vertikalen Scherungen A und B aus SL(L_D). Im Spezialfall D=8 erzeugen diese beiden Elemente die ganze Gruppe und wir geben je ein Verfahren an, um eine untere und eine obere Schranke an die Anzahl der Bahnen von nicht-periodischen Verbindungspunkten P mit fixiertem Hauptnenner N(P) zu finden. Damit zeigen wir:
Theorem 3. Die Menge der Verbindungspunkte P mit festem Wert N(P) zerfällt in eine endliche Anzahl von SL(L_8)-Bahnen.
Im Beweis von Theorem 1 ist es nötig, die Nicht-Mittelbarkeit eines Graphen zu zeigen. Da wir nur sehr wenige Informationen über dessen Struktur in unserer konkreten Situation haben, entwickeln wir in Kapitel 1 die folgende Methode:
Theorem 4. Sei G ein Graph, den man durch Weglassen von Kanten in einen Wald G′ ohne Blätter überführen kann, bei dem das Supremum der Längen von zusammenhängenden Valenz-2-Teilgraphen von G′ beschränkt ist. Dann ist G nicht mittelbar.
Um diese Methode anzuwenden, ordnen wir jeder Ecke P von G ein Komplexitätsmaß s(P) zu und weisen nach, dass dieser Wert für die Operation von Worten in A- und B-Potenzen mit wachsender Wortlänge ”tendenziell wächst“.
The term compensation is widely used in every-day language, in psychological research, and also discussed in the context of Attention Deficit Hyperactivity Disorder (ADHD). However, few studies have looked at psychological compensation in ADHD systematically and theory based. Compensation can be inferred if a deficit (i.e., a mismatch between skill and environmental demand) is counterbalanced by the investment of more effort, the utilization of latent or the acquisition of new skills. Based on the application of a theoretical framework (Bäckman & Dixon, 1992) to ADHD, I developed the following aims: (1) To reassess the awareness of deficits in ADHD and (2) to explore psychological compensation in a group with ADHD that accomplishes high achievement.
The results of Study 1 showed that children with ADHD did not overestimate their own skills compared to a group matched for academic achievement. In Study 2, college students with ADHD reported higher achievement motivation compared to college students without ADHD. Furthermore, results indicated that women with ADHD compensate by adopting compensatory effort and obsessive-compulsive behavior. Study 3 showed that female college students compensate for possible deficits in solving a flanker task by being overly cautious, which may reflect more obsessive-compulsive behavior.
The studies are discussed within the framework of psychological compensation. They add to the understanding of compensation in ADHD by (1) the reassessment of awareness of deficits in ADHD by including a group without ADHD but with low achievement, and by (2) suggesting that overly cautious behavior could be a form of psychological compensation in females with ADHD enabling them to enter college, leading to a late diagnosis and to good performance in cognitive tasks (i.e., flanker task).
Limitations are, that I did not test all components of the theoretical framework in one study and that I did not include adults with ADHD that did not enter college in Study 2 and 3 to test if achievement motivation or overly cautious behavior explains why some adults with ADHD gain admittance to higher education and show good performance in cognitive tasks and others do not.
The phylogeny of the genus Gazella and the phylogeography and population genetics of arabian species
(2014)
Biodiversity is caused by a fundamental evolutionary process: speciation. When species can spread into new habitats and are allowed to colonize new ecological niches, speciation can become accelerated and is then called radiation. This can happen, e.g., when formerly separated land masses become connected. A prime example of such a scenario is the Arabian Peninsula that connects Africa and Asia since the Oligocene (approx. 30 Ma ago). Since then, the peninsula promoted several faunal exchanges between both continents. The mammalian genus Gazella is an excellent candidate for investigating this faunal exchange. Species are distributed on both, the African and Asian continent as well as on the Arabian Peninsula that is located in between. The aim of my thesis was to cast new light on the evolution and speciation of the genus and, furthermore, to evaluate the currently problematic taxonomy to infer suggestions for improved conservation actions for threatened gazelle species. Therefore, I investigated the taxon Gazella genetically and identified factors that promoted the speciation of this diverse genus. I assessed intraspecific genetic variability for species that inhabited the Arabian Peninsula to infer the past demography of those species and to estimate the history of species divergence and past population parameters.
In the first part of my thesis I inferred a mitochondrial phylogeny based on cytochrome b gene sequences using samples of all nine extant species of Gazella and also of closely related taxa (chapter 2). Besides the monophyly of the genus Gazella two reciprocally monophyletic clades were detected that evolved in allopatry: one predominantly African and one predominantly Asian clade. Within both clades species pairs could be inferred with species being ecologically adapted to different habitats: one species is a desert-dweller (probably the ancestral character state combination), while the other one is adapted to rather mountainous and humid habitats. These adaptations also correlate with the behavior of the species with the mountainous forms being sedentary, territorial and living in small groups and the desert forms being migratory, non-territorial and living in larger herds.
The second part of my thesis focuses on the Arabian gazelle species. In a study about G. subgutturosa I could show that the Arabian form G. marica (sand gazelle)—previously recognized as a subspecies of G. subgutturosa—is genetically distinct from the nominate form (chapter 3). Moreover, a phylogenetic tree based on cytochrome b gene sequences revealed a polyphyly of G. subgutturosa and G. marica with sand gazelles being more closely related to G. leptoceros and G. cuvieri of North Africa. Consequently, I suggested the restoration to full species level for G. marica corroborating earlier conservation practices of breeding both taxa separately in captivity.
In case of G. dorcas such a genetic differentiation could not be detected (chapter 4). Despite the large distribution range from Mali in the west to Saudi Arabia in the east only low genetic variation was detectable in mitochondrial sequence data. Statistically parsimony network analyses revealed pronounced haplotype sharing across regions. Using a coalescence approach I observed a steep population decline that started about 25,000 years ago and which is still ongoing. The decline could be correlated with human hunting activities in the Sahara. Hence, hunting of G. dorcas (already in ancient times) had a much larger impact on gazelle populations than previously thought and even led to the extinction of the Arabian form of G. dorcas.
In chapter 5 of my thesis I provided a rigorous test to genetically distinguish between the potential species G. gazella and G. arabica. Previously recognized as a single species mitochondrial sequence analyses provided first hints for the separation of both taxa. But without the investigation of nuclear loci the observed pattern could also be the result of male biased dispersal combined with female philopatry. Therefore, I amplified mitochondrial sequence markers and nuclear microsatellite loci for both taxa and found support for the earlier view of two separate species. No signs of recurrent gene flow could be detected between neighboring populations of G. arabica and G. gazella. The split of both species could be estimated one million years ago and the recommendation of breeding both taxa separately in captivity for conservation purposes is fully justified.
Several populations of G. arabica suffer from a severe decline. In chapter 6 I asked whether the population occurring on the Farasan archipelago—being at stable individual numbers for decades—may serve as potential source for future reintroduction on the Arabian mainland, although the gazelles show a reduced body size. Analyzing the genetic differentiation of Farasan gazelles, a genetic cluster could be inferred being endemic to the archipelago. However, only approx. 70% of Farasan individuals were assigned to this specific cluster, while the others showed at least intermediate or even complete assignment to the mainland cluster. This indicates ongoing introgression that is probably mediated by human translocations of gazelles from and onto the islands. Considering the uniform dwarfism of Farasan gazelles, reasons for the smaller body size might be direct consequences of resource limitations, i.e., phenotypic plasticity. If the population decline on the mainland will hold on Farasan gazelles could serve as stocks for future reintroductions.
In this thesis hard probes are studied in the partonic transport model BAMPS (Boltzmann Approach to MultiParton Scatterings). Employing Monte Carlo techniques, this model describes the 3+1 dimensional evolution of the quark gluon plasma phase in ultra-relativistic heavy-ion collisions by propagating all particles in space and time and carrying out their collisions according to the Boltzmann equation. Since hard probes are produced in hard processes with a large momentum transfer, the value of the running coupling is small and their interactions should be describable within perturbative QCD (pQCD). This work focuses on open heavy flavor, but also addresses the suppression of light parton jets, in particular to highlight differences due to the mass. For light partons, radiative processes are the dominant contribution to their energy loss. For heavy quarks, we show that also binary interactions with a running coupling and an improved Debye screening matched to hard-thermal-loop calculations play an important role. Furthermore, the impact of the mass in radiative interactions, prominently named the dead cone effect, and the interplay with the Landau-Pomeranchuk-Migdal (LPM) effect are studied in great detail. Since the transport model BAMPS has access to all medium properties and the space time information of heavy quarks, it is the ideal tool to study the dissociation and regeneration of J/psi mesons, which is also investigated in this thesis.
The objective of the present doctoral thesis was to investigate the occurrence, distribution, and behaviour of six hydrophilic ethers: ethyl tert-butyl ether (ETBE), 1,4-dioxane, ethylene glycol dimethyl ether (monoglyme), diethylene glycol dimethyl ether (diglyme), triethylene glycol dimethyl ether (triglyme), and tetraethylene glycol dimethyl ether (tetraglyme) in surface-, waste-, ground- and drinking water samples. Solid phase extraction and gas chromatography/mass spectrometry were used to analyze the six hydrophilic ethers. Altogether more than 150 surface water samples, almost 100 of each groundwater and wastewater samples, and 10 raw and drinking water samples were analyzed during the research project.
Initially, the method was validated in order to simultaneously determine the analytes of interest in various aquatic environments. A solid phase extraction method that uses coconut charcoal (Resprep® activated coconut charcoal, Restek) or carbon molecular sieve material (SupelcleanTM Envi-CarbTM Plus, Supelco) for analyte absorption were found suitable for determination of ETBE, 1,4-dioxane, and glymes in surface-, drinking-, ground- and wastewater samples. Precision and accuracy of both methods was demonstrated for all analytes of interest. The recovery of target compounds from the ultrapure water spiked at 1.0 µg L−1 was between 86.8 % and 98.2 %, with relative standard deviation below 6 %. The samples spiked at 10.0 µg L−1 gave slightly higher recovery of 90.6 % to 112.2 % with a relative standard deviation below 3.4 % for each analyte. Detection and quantification limits in ultrapure water and surface waters were furthermore established. The limit of quantitation (LOQ) in ultrapure water ranged between 0.024 µg L−1 to 0.057 µg L−1 using Restek cartridges, and 0.030 µg L−1 to 0.069 µg L−1 using Supelco cartridges. In the surface water samples the calculated LOQ was 0.032 µg L−1 to 0.067µg L−1 using coconut charcoal material and 0.032 µg L−1 to 0.052 µg L−1 using the carbon molecular sieve material. Moreover, stability of the unpreserved and preserved water samples as well as the extracts was determined. Preservation of samples with sodium bisulfate (at 1 gram per Liter) resulted in much better stability of the ethers in water samples. Subsequently, 27 samples obtained from seven surface water bodies in Germany (Rivers Rhine, Lippe, Main, Oder, Rur, Schwarzbach and Wesel-Datteln Canal) were analyzed for the six hydrophilic ethers. ETBE was present in only two surface waters (Rhine River and Wesel-Datteln Canal) with concentrations close to the LOQ (up to 0.065 µg L−1). 1,4-Dioxane was detected in all of the water samples at concentrations reaching 1.93 µg L–1. Monoglyme was identified only in the Main and Rhine Rivers at the maximum concentration of 0.114 µg L–1 and 0.427 µg L–1, respectively. Very high concentrations (up to 1.73 µg L−1) of diglyme, triglyme, and tetraglyme were detected in the samples from the Oder River. These glymes were also detected in the Rhine River; however the concentrations did not exceed 0.200 µg L–1. Furthermore, tetraglyme was detected in the Main River at an average concentration of 0.409 µg L–1 (n = 6) and in one sample from the Rur River at 0.192 µg L–1.
Four sampling campaigns were conducted at the Oderbruch polder between October 2009 and May 2012, in order to study the behavior of the hydrophilic ethers and organophosphates during riverbank filtration and in the anoxic aquifer. Moreover the suitability of these target compounds was assessed for their use as groundwater organic tracers. At the time of each sampling campaign, concentrations of triglyme and tetraglyme in the Oder River were between 20–185 ng L–1 (n = 4) and 273¬–1576 ng L–1 (n = 4). Monoglyme, diglyme, and 1,4-dioxane were analyzed only during the two last sampling campaigns. At that time, the concentration of diglyme in Oder River was 65¬–94 ng L-1 (n = 2) and 1,4-dioxane 1610¬–3290 ng L–1 (n = 2). In the drainage ditch, following bank filtration, concentrations of ethers ranged between 1090 ng L–1 and 1467 ng L–1 for 1,4-dioxane, 23¬ng L–1 and 41 ng L–1 for diglyme, 37 ng L–1 and 149 ng L–1 for triglyme, and 496 ng L–1 and 1403 ng L–1 for tetraglyme. In the anoxic aquifer, 1,4-dioxane showed the greatest persistence during the groundwater passage. At the distance of 1150 m from the river and an estimated groundwater age of 41.9 years, a concentration above 200 ng L−1 was detected. A positive correlation was found for the inorganic tracer chloride (Cl−) with 1,4-dioxane and tetraglyme. Similarities in the behavior of Cl− and the organic compound suggested that 1,4-dioxane and tetraglyme are controlled by the same hydraulic process and therefore can be used as additional tracers to study the dynamics of the groundwater system. These results show that high concentrations of ethers are present in the surface water and are not removed during bank filtration processes. Moreover, the hydrophilic ethers persist in the anoxic aquifer and little or no degradation is expected, supporting, their possible application as organic tracers.
A separate sampling project was conducted for 1,4-dioxane that focused primarily on its fate in the aquatic environment. This study provided missing information on the extent of water pollution with 1,4-dioxane is Germany. Numerous waste-, surface-, ground- and drinking water samples were collected in order to determine the persistence of 1,4-dioxane in the aquatic environment. The occurrence of 1,4-dioxane was determined in wastewater samples from four municipal sewage treatment plants (STP). The influent and effluent samples were collected during weekly campaigns. The average influent concentrations in all four plants ranged from 262 ± 32 ng L−1 to 834 ± 480 ng L−1, whereas the average effluents concentrations were between 267 ± 35 ng L−1 and 62,260 ± 36,000 ng L−1. The source of increased 1,4-dioxane concentrations in one of the effluents was identified to originate from impurities in the methanol used in the postanoxic denitrification process. Spatial and temporal distribution of 1,4-dioxane in the river Main, Rhine, and Oder was also examined. Concentrations reaching 2,200 ng L−1 in the Oder River, and 860 ng L−1 in both Main and Rhine River were detected. The average load during the sampling was estimated to be 6.5 kg d−1 in the Main, 34.1 kg d−1 in the Oder, and 134.5 kg d−1 in the Rhine River. In all of the sampled rivers, concentrations of 1,4-dioxane increased with distance from the mouth of the river and were found to negatively correlate with the discharge of the river. In order to determine if 1,4-dioxane can reach drinking water supplies, samples from a Rhine River bank filtration site and potable water from two drinking water production facilities were analyzed for the presence of 1,4-dioxane in the raw water and finished potable water. The raw water (following bank filtration) contained 650 ng L−1 to 670 ng L−1 of 1,4-dioxane, whereas the concentration in the finished drinking water fell only to 600 ng L−1 and 490 ng L−1, respectively.
During the final project, investigations of the source identification of high glyme concentrations in the Oder River were carried out. During four sampling campaigns between January, 2012 and April, 2013, 50 samples from the Oder River in the Oderbruch region and Poland were collected. During the first two samplings in the Oderbruch polder, glymes were detected at concentration reaching 0.07 µg L-1 (diglyme), 0.54 µg L−1 (triglyme) and 1.73 µg L−1 (tetraglyme) in the Oder River. The extensive sampling campaign of the Oder River (about 500 km) in Poland helped to identify the area of possible glyme entry into the river. During that sampling the maximum concentrations of triglyme and tetraglyme were 0.46 µg L−1 and 2.21 µg L−1, respectively. A closer investigation of the identified area of pollution, helped to determine the possible sources of glymes in the Oder River. Hence, the final sampling focused on the Kaczawa River, a left tributary of the Oder River and Czarna Woda, a left tributary of Kaczawa River. Moreover, samples from an industrial wastewater treatment plant were collected. Samples from Czarna Woda stream and Kaczawa River contained even higher concentrations of diglyme, triglyme, and tetraglyme, reaching 5.18 µg L−1, 12.87 µg L−1 and 80.81 µg L−1, respectively. Finally, three water samples from a wastewater treatment plant receiving influents from a copper smelter were analyzed. Diglyme, triglyme, and tetraglyme were present at an average concentration of 569 µg L−1, 4300 µg L−1, and 65900 µg L−1, respectively in the wastewater. Further research helped to identify the source of the glymes in the wastewater. The gas desulfurization process – Solinox implemented in the nearby copper smelter uses glymes as physical absorption medium for sulfur dioxide.
Results of this doctoral research provide important information about the occurrence, distribution, and behavior of hydrophilic ethers: 1,4-dioxane, monoglyme, diglyme, triglyme, and tetraglyme in the aquatic environment. A method capable of analyzing a wide range of ether compounds: from a volatile ETBE to a high molecular weight tetraglyme was validated. 1,4-Dioxane and tetraglyme were found to be applicable as organic tracers, since they are not easily attenuated during bank filtration and the anoxic groundwater passage. The extent of water pollution with 1,4-dioxane was shown in waste-, surface-, ground-, and drinking waters. One source of extremely high concentrations of 1,4-dioxane in a municipal sewage treatment plant applying postanoxic denitrification was identified, however more information is needed on the entry of 1,4-dioxane into surface waters. Moreover, 1,4-dioxane was present in drinking water samples from river bank filtration, which demonstrates its persistence in the aquatic environment and its low degradation potential during bank filtration and subsequent water treatment. Furthermore, this was the first study that focused primarily on identifying sources of glymes in surface waters. Glymes find a widespread use in industrial sectors, hence establishing their origin in the surface water is difficult (as with 1,4-dioxane). In this work, a gas desulphurization process was identified to be a dominating source of glyme pollution in the Oder River.
In this thesis, different physical and electrical aspects of silicon microstrip sensors and low-mass multi-line readout cables have been investigated. These silicon microstrip sensors and readout cables will be used in the Silicon Tracking System (STS) of the fixed-target heavy-ion Compressed Baryonic Matter (CBM) experiment which is under development at the upcoming Facility for Antiproton and ion Research (FAIR) in Darmstadt, Germany. The highly segmented low-mass tracking system is a central CBM detector system to resolve the high tracking densities of charged particles originating from beam-target interactions. Considering the low material budget requirement the double-sided silicon microstrip detectors have been used in several planar tracking stations. The readout electronics is planned to be installed at the periphery of the tracking stations along with the cooling system. Low-mass multi-line readout cables shall bridge the distance between the microstrip sensors and the readout electronics. The CBM running operational scenario suggests that some parts of the tracking stations are expected to be exposed to a total integrated particle fluence of the order of 1e14 neq/cm2. After 1e14 neq/cm2 the damaged modules in the tracking stations will be replaced. Thus radiation hard sensor is an important requirement for the sensors. Moreover, to cope with the high reaction rates, free-streaming (triggerless) readout electronics with online event reconstruction must be used which require high signal-to-noise (SNR) ratio (i.e., high signal efficiency, low noise contributions). Therefore, reduction in noise is a major goal of the sensor and cable development.
For better insight into the different aspects of the silicon microstrip sensors and multi-line readout cables, the simulation study has been performed using SYNOPSYS TCAD tools. 3D models of the silicon microstrip sensors and the readout cables were implemented which is motivated by the stereoscopic construction of the silicon microstrip sensors. For the evaluation of the performance of the silicon microstrip sensors in the harsh radiation environment during experimental operation, a radiation damage model has been included. It reproduces the behavior of the irradiated CBM prototype sensors. In addition to the static characteristics, the interstrip parameters relevant to understand strip isolation and cross-talk issues have been extracted. The transient simulations have been performed to estimate the charge collection performance of the irradiated sensors. The signal transmission in the readout cables has been evaluated with the finite element simulation tool RAPHAEL. Based on the performance of the front-end electronics used for early prototyping in the CBM experiment, capacitive and resistive noise contributions from the silicon microstrip sensors and multi-line readout cables have been extracted.
To validate the aforementioned simulations, numerous tests have been performed both on the multi-line readout cables and silicon microstrip sensors. Characterizations of multi-line readout cables and silicon microstrip sensors in laboratory conditions have been found to agree reasonably well with the simulations. Considering the expected radiation environment the behavior of silicon microstrip sensors have been studied especially in terms of noise and charge collection efficiency. Source-scan of the silicon microstrip sensors using 241Am is presented. In order to test a first system of detector stations including the data acquisition system, slow control and online monitoring software and for track reconstruction, in-beam tests have been performed at the COSY synchrotron of the Research Center Juelich, Germany. Further, different design parameters have been suggested to improve the sensor and readout cable design on the basis of the simulations and the measurements. Many of these parameters have been implemented in the new prototypes under production. These new prototypes will be tested in-beam by the end of 2013.
Imitation paradigms are used in various domains of developmental psychological research to assess various cognitive processes such as memory (deferred imitation), action perception and action understanding (mainly direct imitation), as well as categorization and learning about objects (deferred imitation with a change in target objects and generalized imitation). Although these processes are most likely not independent from each other, their relations are still largely unclear. On the one hand, deferred imitation studies have shown that infants' performance improves with increasing age, resulting in the reproduction of more target actions after longer delay intervals. On the other hand, imitation studies focusing on infants' action understanding have found that infants do not necessarily imitate the model's exact actions – actions or action steps that seem to be irrational or irrelevant are omitted by infants under certain circumstances (selective imitation). Additionally, findings of imitation studies that require a transfer of the target actions to novel objects have demonstrated that infants do not only learn about actions, but also about objects, when they engage in imitation.
The present dissertation aims at integrating different perspectives of imitation research by testing 12- and 18-month-old infants in deferred imitation tests consisting of functional vs. arbitrary target actions, and by combining deferred imitation with eye tracking in half of the experiments. A deferred imitation paradigm was chosen to assess memory performance. Systematic variation of target action characteristics enabled the assessment of infants' imitation pattern, i.e., if they would imitate one kind of target actions more frequently than the other. Functionality was chosen as the action characteristic in focus because function is an object's most important property, thus this variation might shed some light on infants' learning about objects in the context of an imitation test. The main goal of the eye tracking experiments was to tackle the relations between infants' visual attention to, and deferred imitation of, different kinds of target actions.
The behavioral experiments revealed that both 12- and 18-month-olds imitated significantly more functional than arbitrary target actions after a delay of 30 minutes. In addition, while 12-month-olds showed a memory effect only for functional actions, 18-month-olds showed a memory effect for both kinds of actions. Thus, 12-month-olds imitated strictly selectively, and 18-month-olds imitated more exactly. This shows that the well established memory effect is modulated by target action functionality, which affects 12- and 18-month-olds' imitation differently. Furthermore, when retested after a two weeks delay, 18-month-olds' performance rates of functional and arbitrary target actions decreased parallel. This suggests that selective imitation is not affected by the duration of the retention interval, and that selection of target actions takes place at an earlier stage of action perception and memory processes.
In the eye tracking experiments, both 12- and 18-month-olds' imitation patterns replicated the findings of the behavioral experiments, showing consistently higher imitation rates of functional than arbitrary target actions. Contrary to this, infants' fixation times to the target actions were not affected by target action functionality. This contrast was supported by statistical analyses that found no clear correspondence between visual attention to and deferred imitation of target actions. This suggests that selective imitation cannot be explained by selective visual attention. Nevertheless, finer-grained analyses of gaze and imitation data in the 18 months old group suggested that infants' increased attention to the social-communicative context of the imitation task was related to more exact imitation, i.e. imitation of not only functional, but also arbitrary target actions.
The findings are discussed against the background of imitation theories, with regard to the relations between different cognitive processes underlying infants' imitation, such as memory, action perception and learning about objects.
The work presented in this thesis is devoted to two classes of mathematical population genetics models, namely the Kingman-coalescent and the Beta-coalescents. Chapters 2, 3 and 4 of the thesis include results concerned with the first model, whereas Chapter 5 presents contributions to the second class of models.
Lichens are present in most land ecosystems, frequently occupying habitats where few other organisms are able to survive. Their contribution to the ecosystems in terms of biomass and ground cover increases with latitude and altitude, being, together with bryophytes, the most conspicuous component of alpine and polar landscapes. Whereas some polar lichens have reduced distributions and are restricted to high latitudes, most of them have very wide distributional ranges, which oven extend over several climatic regions. Many of them are common to Polar Regions of both hemispheres, a distributional pattern that has been denominated as bipolar, antitropical or amphitropical. Bipolar distributions are not exclusive to lichens, but common to many groups of organisms. The bipolar element in lichens is exceptional as it includes a large number of species, while in most other land organisms it includes genera or families but very seldom species.
In this dissertation I use the bipolar lichen Cetraria aculeata to give a first insight into the phylogeography of this biogeographic element in lichens. I discuss how and when the disjunct distribution of C. aculeata came to be, and try to partial out the roles that historical and ecological processes played in shaping its distribution.
Sampling was designed to cover a wide geographic extension. The main e"ort was made to collect in boreal, temperate and tropical mountain ranges in North and South America, as well to include Mediterranean populations in which specimens with deviant morphologies are observed.
I found that Cetraria aculeata forms a genetically congruent taxon. Although whether it should include C. muricata remains unsolved, I excluded all specimens identified as the latter from our analyses. Thee populations of both algal and fungal symbionts have a strong geographic structure. The study of the lichen fungus suggested that the species originated in the Eurasian continent and later expanded to acquire its current distribution during the Pleistocene. The results showed that all American populations originated from an ancestral population, more similar to the extant Arctic populations than to the Mediterranean ones.
The comparison between the structure of fungal and algal populations showed a high degree of coherence between them. However, the similarity in photobiont use between Arctic and Antarctic populations suggests that photobiont use responds not only to a history of codispersal in vegetative propagula, but it is also a result of a selective process related to climate. Since this climatic pattern of similarity is also found in the community of Alphaproteobacteria associated with C. aculeata, we concluded that lichens might be able to accommodate or to respond to different environmental conditions by selectively associating with different symbiotic partners.
Lastly, we found the Mediterranean populations of C. aculeata to be genetically differentiated in algal and fungal symbionts from the rest of the populations. While we found no grounds to believe that the overgrown morphs encountered in the region are due to the association with different algal lineages, I believe that a switch in photobiont use might be responsible for the pattern of genetic isolation encountered. Furthermore, I suggest that the Mediterranean and bipolar C. aculeata could be two different species, since both are ecologically, genetically and at least in part morphologically divergent.
Natural products (NPs) have been a rich source for pharmaceutically used anti-infectives and other drugs. However, the application of anti-infectives inevitably causes the development of resistant and multiresistant pathogens, which have to be treated with novel anti-infectives. The industrial research for novel anti-infectives has been concentrating on members of the bacterial Actinomycetales for a long time. Due to several reasons, e.g. the rediscovery of already known NPs, pharmaceutical companies abandoned their NP-research and focused on drug development based on combinatorial chemistry. However, the limited structural diversity of merely synthetic compound libraries has not been a fruitful source for bioactive compounds. Hence the discovery of novel bioactive NPs as a source for anti-infectives is still of economical and humanitarian interest and will remain to be an important branch of research in the future. One strategy to circumvent the rediscovery of bioactive NPs is the analysis of yet unexplored bacterial taxa. Based on this assumption, this work aimed at the discovery of novel NPs from the entomopathogenic bacterial genera Xenorhabdus and Photorhabdus and other promising taxa, as well as the investigation of their biosynthesis. ...