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Sipuncula are marine unsegmented worms that can be found in benthic habitats, from shallow to deep-sea waters. In Mexico these worms have been scarcely studied. Among nine studies in the entire Mexican Pacific coasts, seven are from the central and northwestern Mexican Pacific. For over 80 years, only 24 species have been recorded. To improve the knowledge of the sipunculans from the central and northwestern Mexican Pacific, 501 specimens from three scientific collections of Mexico were revised. The specimens were collected by diverse methods from intertidal, subtidal, and bathyal depths (~1000 m), from 27 locations along the central and northwestern Mexican Pacific. Sixteen taxa belonging to nine genera and five families were identified. One species is recorded for the first time in the Mexican Pacific and five new species are described, one from intertidal and shallow subtidal depths: Phascolosoma (Phascolosoma) azteca sp. nov.; two from subtidal depths: Phascolion (Lesenka) salgadoi sp. nov. and Sipunculus (Sipunculus) bastidai sp. nov.; and two from bathyal depths: Apionsoma (Apionsoma) silviae sp. nov. and Apionsoma (Edmondsius) hendrickxi sp. nov.
Five new and four known species of the genus Dorylaimellus Cobb, 1913 are described and illustrated from the Western Ghats of India. Dorylaimellus attenuatus sp. nov. has a 0.73–0.84 mm long body; lip region rounded, offset; odontostyle attenuated with indistinct lumen, odontophore 9–10 µm long; expanded part of pharynx 39–48% of neck length; female genital system amphidelphic and tail long filiform. Dorylaimellus cylindricaudatus sp. nov. has a 1.0–1.15 mm long body; lip region rounded, offset; odontostyle 4 µm long, odontophore 11–12 µm long; expanded part of pharynx 47–56% of neck length; female genital system amphidelphic, and tail elongate-cylindrical with rounded terminus. Dorylaimellus karnatakensis sp. nov. has a 1.2–1.3 mm long body; lip region rounded, offset; odontostyle 5 µm long, odontophore 12–13 µm long; expanded part of pharynx 45–53% of neck length; female genital system amphidelphic; spicules 22 µm long, ventromedian supplements four, and tail elongate-conoid dorsally convex. Dorylaimellus kasplateauensis sp. nov. has a 0.68–0.83 mm long body, lip region with a weak perioral disc; odontostyle 6–7 µm long, odontophore 11–14 µm long; expanded part of pharynx 38–43% of neck length; female genital system amphidelphic, and tail elongate arcuate conoid. Dorylaimellus tropicus sp. nov. has a 0.6–0.7 mm long body; lip region rounded, offset; odontostyle 4–5 µm long, odontophore 8–10 µm long; hemizonid present; expanded part of pharynx 43–52% of neck length; female genital system amphidelphic and tail elongate-filiform, sudden tapering, ending with rounded tip. Dorylaimellus andrassyi, D. discocephalus, D. belondirelloides, D. chakpilus are redescribed based on the specimens collected from several localities of the Western Ghats.
Sarinda sombraluminosa Hagopián, Laborda & Simó sp. nov. and Sarinda contraluz Hagopián & Bustamante sp. nov. are described from Uruguay based on males and females. New records of Parafluda banksi Chickering, 1946 and Sarinda marcosi Piza, 1937 for the country are provided. Illustrations and electron micrographs of sexual characters, photographs of alive specimens, natural history data and a distribution map of species of Sarandini from Uruguay are provided.
Oceanic islands harbor a unique and distinct fauna and flora, usually isolated by distance and the deep sea, making them fascinating environments to study. Despite their importance, taxonomic accounts from Brazilian oceanic islands have only recently begun to focus on important groups such as the Syllidae family. In this article, we present detailed descriptions and illustrations of two new species, Brevicirrosyllis paulolanai sp. nov. from Trindade Islands, and Westheidesyllis splendida sp. nov. from Rocas Atoll. These two species belong to genera currently of uncertain affinities within the family, in both cases previously included in the Eusyllinae subfamily. Moreover, we provide updated identification keys for both genera to facilitate their future identification.
The genus Armillipora Quate is recorded for the first time in Ecuador, with a new geographical record for Armillipora selvica Quate, 1996 and the descriptions of two new species, namely Armillipora muyu sp. nov. and Armillipora imitata sp. nov., doubling the total number of species in the genus. In addition, we make available the first DNA barcodes for the genus, providing a sequence of the 5´-end of the cytochrome c oxidase subunit I (COI) gene for A. imitata, A. muyu, and, A. selvica. Moreover, we describe the second known female of the genus and we provide a taxonomical key for the known males of the world. Finally, we build Species Distribution Models and discuss the potential distribution of the genus in the Neotropical region.
The erasipterid Sinoerasipteron xiaheyanensis Nel & Huang gen. et sp. nov. from the Moscovian Tupo Formation in Xiaheyan locality (China), is described and illustrated. It is the sixth species of the odonatopteran griffenflies from this locality. This new discovery confirms the high diversity of these flying predators in the insect assemblage.
Six new species of the genus Rhaphidophora Serville, 1838 are described from China: R. hexagoniproctalis Wang, Di & He sp. nov., R. heterodentis Shen, Wang & He sp. nov., R. imbricofurca Shen, Wang & He sp. nov., R. glenoides Qin, Wang & He sp. nov., R. impressa Wang, Qin & He sp. nov., R. stenoterminata Zhang, Wang & He sp. nov. A key with previously described species from China is provided.
A contribution to the taxonomy of the genus Pelecium Kirby (Coleoptera: Carabidae: Peleciini)
(2024)
Pelecium Kirby, 1817 is a neotropical genus of flightless carabid beetles comprising 34 species, distributed from Panama to middle Argentina. Most species of Pelecium are known from short series and few localities, in some cases only from the holotype. Male and female abdominal terminalia are not described for the majority of the species, a situation that makes it difficult to describe new species or to study intraspecific variation. Here, we describe nine new species based on individuals from Brazil: Pelecium buckupi sp. nov., P. fistulosus sp. nov. and P. zaguryi sp. nov. from the Centre-West region, P. belloi sp. nov., P. chrissquirei sp. nov., P. straneoi sp. nov. and P. zophos sp. nov. from the Southeast region, and P. balli sp. nov. and P. grossii sp. nov. from the South region. We also provide new distributional records and descriptions of abdominal terminalia for twelve species: Pelecium atroviolaceum Straneo & Ball, 1989, P. bolivianum Straneo & Ball, 1989, P. cyanipes Kirby, 1817, P. helenae Straneo & Ball, 1989, P. laeve Chaudoir, 1854, P. negrei Straneo, 1962, P. drakei Quedenfeldt, 1890, P. punctatostriatum Straneo, 1970, P. purpureum Straneo, 1955, P. rotundipenne Schaum, 1860, P. striatum Straneo, 1955 and P. violaceum Brullé, 1838.
During exploratory surveys of the fungal diversity in Margalla Hills National Park, Islamabad, we collected a new species of the genus Hymenopellis R.H.Petersen. This is the second report of any species of this genus from Pakistan. Hymenopellis areolata F.Razzaq & Khalid sp. nov. is characterized by an areolate pileus, small basidiospores, and transitional pileipellis (hymeniderm and epithelium) with small pileocystidia. Molecular phylogenetic analyses of the nucleotide sequences of nrITS and nrLSU regions, and morphological data support the description of this new species. A comparison with other closely related species confirmed that the newly described species is distinct from others.
Unser Zusammenleben basiert auf normativen Ordnungen. Auch die Demokratie ist eine solche Ordnung. Ihre Regeln sind nicht statisch, sie können verändert, angepasst werden. Doch was, wenn die Menschen der Demokratie nicht mehr vertrauen? Darüber sprach »Forschung Frankfurt« mit Rainer Forst, Professor für politische Philosophie an der Goethe-Universität.
This paper reviews little-known species of the dysderid spider genera Dysdera Latreille, 1804, and Dysderella Dunin, 1992 based on specimens collected in the Caucasus, Middle East, and Central Asia. After combining molecular phylogeny of five mitochondrial and three nuclear genes with morphological evidence, Dysderella is proposed as a junior synonym of Dysdera. In addition, three species are described as new to science: D. jaegeri Bellvert & Dimitrov sp. nov., D. naouelae Bellvert & Dimitrov sp. nov., and D. kourosh Bellvert, Zamani & Dimitrov sp. nov. Four combinations are proposed: Dysdera caspica Dunin, 1990 comb. rev., Dysdera transcaspica Dunin & Fet, 1985 comb. rev., Dysdera elburzica (Zamani, Marusik & Szűts, 2023) comb. nov. and Dysdera sancticedri (Brignoli, 1978) comb. nov. (ex. Dasumia Thorell, 1875). Furthermore, we report a first record of D. festai Caporiacco, 1929 in Turkey and its male cheliceral polymorphism. Our results illustrate the deficiencies that undermine the current taxonomy of this genus. For example, many species are described based on only one or few specimens or limited locality data. The advancements in DNA sequencing technologies applied to museum specimens reduce the need for fieldwork collection and export of fresh specimens. This highlights the significance of museum collections for improving research in this field.
The genus Cerabilia Laporte de Castelnau (Carabidae: Abacetini) is revised for New Zealand. Thirteen species are recognized.
Seven species are described as new: Cerabilia (Cerabilia) cordata Larochelle and Larivière new species, Cerabilia (Cerabilia) kaihoka Larochelle and Larivière new species, Cerabilia (Cerabilia) laevis Larochelle and Larivière new species, Cerabilia (Cerabilia) motunau Larochelle and Larivière new species, Cerabilia (Cerabilia) rugosa Larochelle and Larivière new species, Cerabilia (Cerabilia) takaka Larochelle and Larivière new species, Cerabilia (Cerabilia) willi Larochelle and Larivière new species.
A lectotype is designated for Zabronothus striatulus Broun, 1893.
A revision of all species of Cerabilia (Cerabilia) is provided. Descriptions, an identification key, illustrations of male genitalia, habitus photos, distributional data, and maps are given. Information on ecology, biology, dispersal power, and collecting techniques is included for each species.
ZooBank registration. urn:lsid:zoobank.org:pub:7E3F093D-A5EA-4912-8B30-8380A6F2D890
Abstract. New state records for 35 species of Eucnemidae (Coleoptera: Elateroidea) are reported from the eastern United States based on examination and identification of specimens from several institutional and two private collections in the last year. Images of 18 eucnemid species are provided.
ZooBank registration. urn:lsid:zoobank.org:pub:59455AAD-A59A-49BF-BFDE-1C7AD4B232FE
We present new and atypical host records for 78 species, subspecies, species-groups, and variants of spider wasps (Hymenoptera: Pompilidae) from North America and South America. The records are listed in modified taxonomic order following the Catalog of Hymenoptera in America North of Mexico, Volume 2, Apocrita (Aculeata) (Krombein 1979). These records are an extension of previous host records reported by Kurczewski (2010), Kurczewski and Edwards (2012), and Kurczewski et al. (2017, 2020, 2022b). New genus and species host records are given for the genera and subgenera Calopompilus Ashmead, Chirodamus Haliday, Pepsis Fabricius, Hemipepsis Dahlbom, Priocnessus Banks, Entypus Dahlbom, Pompilocalus Roig-Alsina, Priocnemis Schiødte, Auplopus Spinola, Ageniella Banks, ?Aridestus Banks, Agenioideus (Agenioideus) Ashmead, Sericopompilus Howard, Episyron Schiødte, Poecilopompilus Ashmead, Tachypompilus Ashmead, Lophopompilus Radoszkowski, Notiochares Banks, Arachnophroctonus Howard, Anoplius Dufour, Xerochares Evans, Ammosphex Wilcke, Arachnospila Kincaid, and Priochilus Banks. New host families are presented for species of Chirodamus (Pycnothelidae), Pepsis (Actinopodidae, Idiopidae, Lycosidae), Priocnessus (Lycosidae), Pompilocalus (Barychelidae), Priocnemis (Araneidae), Ageniella (Trechaleidae), ?Aridestus (Theraphosidae), Agenioideus (Agenioideus) (Pimoidae), Tachypompilus (Theraphosidae, Amaurobiidae, Sicariidae), Lophopompilus (Tracheleidae), Arachnophroctonus (Theraphosidae), and Anoplius (Corinnidae, Cybaeidae). First-time host spider families are introduced for Chirodamus hirsutulus (Spinola) (Pycnothelidae), Pepsis albocinta Smith (Actinopodidae), P. elevata Fabricius (Theraphosidae, Lycosidae), P. plutus Erichson (Theraphosidae), P. amyntas Mocsáry (Actinopodidae), P. ?chrysoptera Burmeister (Pycnothelidae), P. viridisetosa Spinola (orange-winged variant) (Theraphosidae); Priocnessus apache Banks (Agelenidae), P. nebulosus (Lycosidae), P. nuperus (Cresson) (Agelenidae, Lycosidae), Entypus velutinus (Taschenberg) (Ctenidae), Pompilocalus nemequene Roig-Alsina (Barychelidae), Priocnemis sp. (Araneidae), Auplopus comparatus (Smith) (Sparassidae), Ageniella (Ageniella) coronata Banks (Gnaphosidae), Ageniella (Ageniella) cupida (Cresson) species-group (Agelenidae), Ageniella (Ameragenia) sanguinolenta (Smith) (Trechaleidae), ?Aridestus bergi (Holmberg) (Theraphosidae), Agenioideus (Agenioideus) humilis (Cresson) (Pimoidae), Poecilopompilus costatus (Taschenberg) (Araneidae), P. familiaris (Banks) (Thomisidae), P. fervidus (Smith) (Araneidae), Tachypompilus ferrugineus (Amaurobiidae), T. pallidus (Banks) (Theraphosidae), T. unicolor cerinus Evans (Sicariidae), Tachypompilus sp. (Theraphosidae), Anoplius (Lophopompilus) carolina (Banks) (Trachelidae), Anoplius (Notiochares) triquetrus (Fox) (Lycosidae), Anoplius (Arachnophroctonus) vividus (Smith) (Theraphosidae), ?Anoplius (Anoplius) imbellis Banks (Cybaeidae), Anoplius triquetrus (Fox) (Lycosidae), Anoplius sp. [undescribed] (Corinnidae), Arachnospila imitatrix Wahis or A. trochilinus (Holmberg) (Lycosidae), A. titicacaensis (Strand) (Lycosidae), and Priochilus regius (Fabricius) (Cyrtaucheniidae). Actinopodidae (mouse spiders), Idiopidae (true trapdoor spiders), Sicariidae (recluse and violin spiders), Cybaeidae (water spiders), and Pimoidae are reported as first-time pompilid host spider families. Our new records on nesting behavior and host spiders for the diverse family Pompilidae highlight the valuable information provided by citizen science and the use of such platforms as iNaturalist.org
ZooBank registration. urn:lsid:zoobank.org:pub:853E1294-B73D-43B8-8D82-AFD2E0B00352
We propose several nomenclatural changes for taxa in the subfamily Cladodinae and the lampyrid tribes Cratomorphini, Lamprocerini, Lampyrini, Photinini, and Pleotomini in the subfamily Lampyrinae (Coleoptera: Lampyridae). We present evidence for the correct year of description of Calotrachelum flavolineatum Pic, 1941, Diaphanes lateapicalis breveapicalis Pic, 1954, Photinus conradti Pic, 1940, and all species described by Charles Émile Blanchard. Spellings are corrected for Diaphanes lateapicalis breveapicalis Pic, 1954, Diaphanes latipennis dartevillei Pic, 1952, Diaphanes longecarinatus Pic, 1955, Diaphanes moultoni latemarginatus Pic, 1938, Lampyris olivieriana von Heyden, 1890, and Photinus reductemarginalis Pic, 1941. We propose Lucidota puertoestrellaensis Keller and Martin nomen novum to replace Lucidota boliviana Pic, 1927, and Photinus laticollis brasiliensis Keller and Martin nomen novum for Photinus laticollis latior Pic, 1941. Seventy taxa described as variations or aberrations in the tribes Cratomorphini, Lamprocerini, Lampyrini, Photinini, and Pleotomini in the subfamily Lampyrinae by McDermott (1966), are evaluated to subspecies with their availability determined based on ICZN (1999: Article 45.6). Photinus motschulskyi Zaragoza-Caballero, Zurita-Garcia, and Ramírez-Ponce, 2023 is synonymized under Photinus intercalatus Gemminger, 1870. Lastly, we correct the type species of the genus Lucidina Gorham, 1833, and address the dates of publication for fireflies described by Blanchard.
ZooBank registration. urn:lsid:zoobank.org:pub:DCD31B02-DF17-4115-A9A8-A6CBB02D8684
The genus Lichnanthe Burmeister (Coleoptera: Scarabaeoidea: Glaphyridae) has been comprised of eight Nearctic species and contains the only New World members of their family. Here, two new species of arenicolous bumblebee scarabs are described from the central United States. The recent discovery of an undescribed Wyoming species led to the reevaluation of a dubious 134-year-old Nebraska Lichnanthe specimen, indicating that it also was an undescribed species. These two species, Lichnanthe brusti new species from central Wyoming and L. bruneri new species from central Nebraska are immediately distinguishable from all existing species of the genus by their square mandibles.
ZooBank registration. urn:lsid:zoobank.org:pub:401927DA-66D9-47A1-AE68-965210824713
Anthrenus (Anthrenus) muehlei, a new species (Coleoptera: Dermestidae: Megatominae) from Iran
(2024)
A new species, Anthrenus muehlei Holloway and Herrmann (Coleoptera: Dermestidae: Megatominae), from Iran is described. Images of internal and external features are presented. Only female specimens were found and described, but the bursa copulatrix contains obvious sclerites enabling easy differentiation from all other known species from the Palaearctic A. pimpinellae complex. The possible function and taxonomic implication of the sclerites is mentioned.
ZooBank registration. urn:lsid:zoobank.org:pub:97661C20-803E-4785-A4B0-58B16C94D9A2
Residual connections have been proposed as an architecture-based inductive bias to mitigate the problem of exploding and vanishing gradients and increased task performance in both feed-forward and recurrent networks (RNNs) when trained with the backpropagation algorithm. Yet, little is known about how residual connections in RNNs influence their dynamics and fading memory properties. Here, we introduce weakly coupled residual recurrent networks (WCRNNs) in which residual connections result in well-defined Lyapunov exponents and allow for studying properties of fading memory. We investigate how the residual connections of WCRNNs influence their performance, network dynamics, and memory properties on a set of benchmark tasks. We show that several distinct forms of residual connections yield effective inductive biases that result in increased network expressivity. In particular, those are residual connections that (i) result in network dynamics at the proximity of the edge of chaos, (ii) allow networks to capitalize on characteristic spectral properties of the data, and (iii) result in heterogeneous memory properties. In addition, we demonstrate how our results can be extended to non-linear residuals and introduce a weakly coupled residual initialization scheme that can be used for Elman RNNs.
Brecht zufolge birgt die Frage nach den Verpflichtungen der Kunst eine unauflösbare Dialektik: Kunst und politischer Zweck sind einander nicht äußerlich, ihre Beziehung ist nicht durch Konflikt oder gegenseitigen Ausschluss gekennzeichnet, sondern vielmehr durch das Versprechen schöpferischer Reibung und gegenseitiger Bereicherung. Dies entspricht nicht der Art und Weise, in der die Literaturwissenschaft traditionell über die Beziehung der Literatur zur Sphäre der Politik nachgedacht hat. Sie hat vielmehr dazu geneigt, den Versuch, Kunst als politische Arbeit zu begreifen, als Kategorienfehler zubetrachten - als eine von außen herangetragene Zumutung, die beiden schadet: der Kunst und der Politik. [...] Wenn wir verschüttete literaturgeschichtliche Genealogien wiederherstellen, um der theoretischen Untersuchung alternative Wege aufzuzeigen, orientieren wir uns an neueren Bemühungen, ausgewählte Episoden politisierten Schreibens nicht als literaturgeschichtliche Anomalien zu betrachten, sondern als Schlüsselmomente in der Konfiguration der Beziehung zwischen Literatur und Politik - als einflussreiche Epizentren interventionistischer Kunst, von denen aus Debatten über Literaturpolitik und Praktiken engagierten Schreibens in neue und global ausgedehnte Kontexte ausstrahlen können. Die von uns vorgeschlagene Periodisierung verbindet experimentell drei Perioden intensiv politisierter und aktivistischer Kunst und Schriftstellerei: die Zwischenkriegszeit, die langen 1960er Jahre und die Gegenwart. Damit sollen alternative Traditionen sichtbar gemacht werden, die Raymond Williams zufolge oft an den Rändern des Jahrhunderts zurückgelassen wurden. Diese Periodisierung verzichtet auch bewusst darauf, eine einzige oder eindeutige Geschichte politisierter Literatur nachzuzeichnen.
Let's call it Nachbarschaft
(2024)
Im Sommer 2023 zogen das ZfL, das ZAS und die gemeinsame Verwaltung der Geisteswissenschaftlichen Zentren Berlin aus der Schützenstraße in Berlin-Mitte nach Wilmersdorf. In dem an der Pariser Str. 1, Ecke Meierottostr. 8 neu errichteten Gebäude ACHTUNDEINS von Eike Becker_Architekten bespielen die Zentren nun insgesamt drei Etagen. Im Erdgeschoss befinden sich, von außen einsehbar, die Forschungsbibliotheken von ZfL und ZAS sowie der Eberhard-Lämmert-Saal. Während des Neujahrsempfangs, mit dem sich ZfL, ZAS und die GWZ am 11. Januar 2024 der unmittelbaren Nachbarschaft vorstellten, entstand die Idee zu dieser Glosse.
In a similar way to dramatic performances and plays, song lyrics establish a complex discourse structure whereby listeners are placed in a position to overhear ‘the pretence of a conversation constructed to convey the performer’s meaning’ (Nahajec 2019: 25; see also Short 1996: 169). In Taylor Swift’s songwriting, listeners are positioned not only to eavesdrop on the narratives presented but are also invited to conceptualise and enact particular roles and scenarios in the discourse. This paper offers a stylistic analysis of songwriting and narrative structure across Swift’s oeuvre to identify how disnarration strategies are used to build stories in her two sister albums written and produced during the Covid-19 pandemic, folklore (2020) and evermore (2020). Specifically, this study examines how disnarration characterises the albums’ narrators, establishes narrator-narratee relationships and invites listeners to adopt a participatory role in the meaning-making process. Through close analysis of four songs across the two albums, this paper builds on developing studies of the stylistics of songwriting (see West 2019) and argues that disnarration strategies foreground particular themes within the discourse, such as nostalgia, wistfulness and regret, and contribute to the fictionalisation and self-aware storytelling characteristic of these albums’ storyworlds.
The Federal Reserve has been publishing federal funds rate prescriptions from Taylor rules in its Monetary Policy Report since 2017. The signals from the rules aligned with Fed action on many occasions, but in some cases the Fed opted for a different route. This paper reviews the implications of the rules during the coronavirus pandemic and the subsequent inflation surge and derives projections for the future.
In 2020, the Fed took the negative prescribed rates, which were far below the effective lower bound on the nominal interest rate, as support for extensive and long-lasting quantitative easing. Yet, the calculations overstate the extent of the constraint, because they neglect the supply side effects of the pandemic.
The paper proposes a simple model-based adjustment to the resource gap used by the rules for 2020. In 2021, the rules clearly signaled the need for tightening because of the rise of inflation, yet the Fed waited until spring 2022 to raise the federal funds rate. With the decline of inflation over the course of 2023, the rules’ prescriptions have also come down. They fall below the actual federal funds rate target range in 2024. Several caveats concerning the projections of the interest rate prescriptions are discussed.
Although iron-based catalysts are regarded as a promising alternative to precious metal catalysts, their precise electronic structures during catalysis still pose challenges for computational descriptions. A particularly urgent question is the influence of the environment on the electronic structure, and how to describe this properly with computational methods. Here, we study an iron porphyrin chloride complex adsorbed on a graphene sheet using density functional theory calculations to detail how much the electronic structure is influenced by the presence of a graphene layer. Our results indicate that weak interactions due to van der Waals forces dominate between the porphyrin complex and graphene, and only a small amount of charge is transferred between the two entities. Furthermore, the interplay of the ligand field environment, strong p − d hybridization, and correlation effects within the complex are strongly involved in determining the spin state of the iron ion. By bridging molecular chemistry and solid state physics, this study provides first steps towards a joint analysis of the properties of iron-based catalysts from first principles.
Determining the structure and mechanisms of all individual functional modules of cells at high molecular detail has often been seen as equal to understanding how cells work. Recent technical advances have led to a flush of high-resolution structures of various macromolecular machines, but despite this wealth of detailed information, our understanding of cellular function remains incomplete. Here, we discuss present-day limitations of structural biology and highlight novel technologies that may enable us to analyze molecular functions directly inside cells. We predict that the progression toward structural cell biology will involve a shift toward conceptualizing a 4D virtual reality of cells using digital twins. These will capture cellular segments in a highly enriched molecular detail, include dynamic changes, and facilitate simulations of molecular processes, leading to novel and experimentally testable predictions. Transferring biological questions into algorithms that learn from the existing wealth of data and explore novel solutions may ultimately unveil how cells work.
Highlights
• Currently, China has the most publications, ahead of the USA and European countries.
• Research focuses are strictly separated into ecological and material science topics.
• Russia and Ukraine are among the frontrunners with a clear focus on materials science.
• The focus in PFAS research is shifting toward ecological issues.
• A national imbalance can be observed that leaves the low economies behind.
Abstract
The European Commission's current efforts to launch the largest proposal to restrict per- and polyfluoroalkyl substances (PFAS) in history reflect the dire global plight of PFAS accumulation in the environment and their health impacts. While there are existing studies on PFAS research, there is a lack of comprehensive analysis that both covers the entire research period and provides deep insights into global research patterns, incentives, and barriers based on various parameters. We have been able to demonstrate the increasing interest in PFAS research, although citation numbers are declining prematurely. Policy regulations based on proving and establishing the toxicity of PFASs have stimulated research in developed countries and vice versa, with increasing emphasis on ecological aspects. China, in particular, is investing increasingly in PFAS research, but without defining or implementing regulations - with devastating effects. The separation of industrial and environmental research interests is clear, with little involvement of developing countries, even though their exposure to PFAS is devastating. It, therefore, requires increased globally networked and multidisciplinary approaches to address PFAS contamination challenges.
Motivated by the question of the impact of selective advantage in populations with skewed reproduction mechanisms, we study a Moran model with selection. We assume that there are two types of individuals, where the reproductive success of one type is larger than the other. The higher reproductive success may stem from either more frequent reproduction, or from larger numbers of offspring, and is encoded in a measure Λ for each of the two types. Λ-reproduction here means that a whole fraction of the population is replaced at a reproductive event. Our approach consists of constructing a Λ-asymmetric Moran model in which individuals of the two populations compete, rather than considering a Moran model for each population. Provided the measure are ordered stochastically, we can couple them. This allows us to construct the central object of this paper, the Λ−asymmetric ancestral selection graph, leading to a pathwise duality of the forward in time Λ-asymmetric Moran model with its ancestral process. We apply the ancestral selection graph in order to obtain scaling limits of the forward and backward processes, and note that the frequency process converges to the solution of an SDE with discontinuous paths. Finally, we derive a Griffiths representation for the generator of the SDE and use it to find a semi-explicit formula for the probability of fixation of the less beneficial of the two types.
IHMCIF: an extension of the PDBx/mmCIF data standard for integrative structure determination methods
(2024)
IHMCIF (github.com/ihmwg/IHMCIF) is a data information framework that supports archiving and disseminating macromolecular structures determined by integrative or hybrid modeling (IHM), and making them Findable, Accessible, Interoperable, and Reusable (FAIR). IHMCIF is an extension of the Protein Data Bank Exchange/macromolecular Crystallographic Information Framework (PDBx/mmCIF) that serves as the framework for the Protein Data Bank (PDB) to archive experimentally determined atomic structures of biological macromolecules and their complexes with one another and small molecule ligands (e.g., enzyme cofactors and drugs). IHMCIF serves as the foundational data standard for the PDB-Dev prototype system, developed for archiving and disseminating integrative structures. It utilizes a flexible data representation to describe integrative structures that span multiple spatiotemporal scales and structural states with definitions for restraints from a variety of experimental methods contributing to integrative structural biology. The IHMCIF extension was created with the benefit of considerable community input and recommendations gathered by the Worldwide Protein Data Bank (wwPDB) Task Force for Integrative or Hybrid Methods (wwpdb.org/task/hybrid). Herein, we describe the development of IHMCIF to support evolving methodologies and ongoing advancements in integrative structural biology. Ultimately, IHMCIF will facilitate the unification of PDB-Dev data and tools with the PDB archive so that integrative structures can be archived and disseminated through PDB.
The Russian invasion of Ukraine illustrates the increasingly judicialized nature of international relations and geopolitics. By viewing aspects of the invasion as illegal – in particular through the identification of war crimes and crimes against humanity – the international response draws attention to the political geographies of international criminal investigation. Human rights groups, academics, journalists, and open-source forensic investigations have joined forces to collect, evaluate and analyze the violent nature of war crimes. While similar shifts in evidence gathering have been observed in the case of the Bosnia-Herzegovina war and the Assad regime's violence against Syrian citizens, the use of evidence-gathering technologies and evidence-securing institutions in the case of Ukraine is distinctive. In this scholarly intervention we seek to illustrate the intimate geopolitics of evidence gathering by zooming in on two different elements that shape evidential procedures in Ukraine: i) the blurring of civilian/military boundaries; and ii) the challenges of access. By evaluating what is new and what is similar to previous war sites, we suggest that these two areas reflect a geopolitics of evidence gathering, highlighting its global-local intimacies. Both these areas are well positioned to foster new research on the (geo)legal nature of war crimes in political geography and beyond.
Studying the neural basis of human dynamic visual perception requires extensive experimental data to evaluate the large swathes of functionally diverse brain neural networks driven by perceiving visual events. Here, we introduce the BOLD Moments Dataset (BMD), a repository of whole-brain fMRI responses to over 1,000 short (3s) naturalistic video clips of visual events across ten human subjects. We use the videos’ extensive metadata to show how the brain represents word- and sentence-level descriptions of visual events and identify correlates of video memorability scores extending into the parietal cortex. Furthermore, we reveal a match in hierarchical processing between cortical regions of interest and video-computable deep neural networks, and we showcase that BMD successfully captures temporal dynamics of visual events at second resolution. With its rich metadata, BMD offers new perspectives and accelerates research on the human brain basis of visual event perception.
The ubiquitin (Ub) code denotes the complex Ub architectures, including Ub chains of different length, linkage-type and linkage combinations, which enable ubiquitination to control a wide range of protein fates. Although many linkage-specific interactors have been described, how interactors are able to decode more complex architectures is not fully understood. We conducted a Ub interactor screen, in humans and yeast, using Ub chains of varying length, as well as, homotypic and heterotypic branched chains of the two most abundant linkage types – K48- and K63-linked Ub. We identified some of the first K48/K63 branch-specific Ub interactors, including histone ADP-ribosyltransferase PARP10/ARTD10, E3 ligase UBR4 and huntingtin-interacting protein HIP1. Furthermore, we revealed the importance of chain length by identifying interactors with a preference for Ub3 over Ub2 chains, including Ub-directed endoprotease DDI2, autophagy receptor CCDC50 and p97-adaptor FAF1. Crucially, we compared datasets collected using two common DUB inhibitors – Chloroacetamide and N-ethylmaleimide. This revealed inhibitor-dependent interactors, highlighting the importance of inhibitor consideration during pulldown studies. This dataset is a key resource for understanding how the Ub code is read.
Zinc finger (ZnF) domains appear in a pool of structural contexts and despite their small size achieve varying target specificities, covering single-stranded and double-stranded DNA and RNA as well as proteins. Combined with other RNA-binding domains, ZnFs enhance affinity and specificity of RNA-binding proteins (RBPs). The ZnF-containing immunoregulatory RBP Roquin initiates mRNA decay, thereby controlling the adaptive immune system. Its unique ROQ domain shape-specifically recognizes stem-looped cis-elements in mRNA 3’-untranslated regions (UTR). The N-terminus of Roquin contains a RING domain for protein-protein interactions and a ZnF, which was suggested to play an essential role in RNA decay by Roquin. The ZnF domain boundaries, its RNA motif preference and its interplay with the ROQ domain have remained elusive, also driven by the lack of high-resolution data of the challenging protein. We provide the solution structure of the Roquin-1 ZnF and use an RBNS-NMR pipeline to show that the ZnF recognizes AU-rich elements (ARE). We systematically refine the contributions of adenines in a poly(U)-background to specific complex formation. With the simultaneous binding of ROQ and ZnF to a natural target transcript of Roquin, our study for the first time suggests how Roquin integrates RNA shape and sequence specificity through the ROQ-ZnF tandem.
G protein-coupled receptors (GPCRs) play a crucial role in modulating physiological responses and serve as the main drug target. Specifically, salmeterol and salbutamol which are used for the treatment of pulmonary diseases, exert their effects by activating the GPCR β2-adrenergic receptor (β2AR). In our study, we employed coarse-grained molecular dynamics simulations with the Martini 3 force field to investigate the dynamics of drug molecules in membranes in presence and absence of β2AR. Our simulations reveal that in more than 50% of the flip-flop events the drug molecules use the β2AR surface to permeate the membrane. The pathway along the GPCR surface is significantly more energetically favorable for the drug molecules, which was revealed by umbrella sampling simulations along spontaneous flip-flop pathways. Furthermore, we assessed the behavior of drugs with intracellular targets, such as kinase inhibitors, whose therapeutic efficacy could benefit from this observation. In summary, our results show that β2AR surface interactions can significantly enhance membrane permeation of drugs, emphasizing their potential for consideration in future drug development strategies.
Motivated by the question of the impact of selective advantage in populations with skewed reproduction mechanims, we study a Moran model with selection. We assume that there are two types of individuals, where the reproductive success of one type is larger than the other. The higher reproductive success may stem from either more frequent reproduction, or from larger numbers of offspring, and is encoded in a measure Λ for each of the two types. Our approach consists of constructing a Λ-asymmetric Moran model in which individuals of the two populations compete, rather than considering a Moran model for each population. Under certain conditions, that we call the "partial order of adaptation", we can couple these measures. This allows us to construct the central object of this paper, the Λ−asymmetric ancestral selection graph, leading to a pathwise duality of the forward in time Λ-asymmetric Moran model with its ancestral process. Interestingly, the construction also provides a connection to the theory of optimal transport. We apply the ancestral selection graph in order to obtain scaling limits of the forward and backward processes, and note that the frequency process converges to the solution of an SDE with discontinous paths. Finally, we derive a Griffiths representation for the generator of the SDE and use it to find a semi-explicit formula for the probability of fixation of the less beneficial of the two types.
The chenopodium aphid, Hayhurstia atriplicis (Linnaeus, 1761) (Hemiptera: Aphididae), is reported for the first time in Colombia. The aphid was found on the aerial parts of the quinoa plant, Chenopodium quinoa Willd. (Amaranthaceae), especially on the leaves, in five municipalities in the department of Cauca, Colombia. Brief information on its natural enemies, distribution and biology is provided. This is the only aphid in Colombia known to cause malformations on the leaves of quinoa plants. In South America, this aphid has been found previously only in Ecuador, where it was reported for the first time in 2023 based on specimens collected from 2019 to 2021. However, we report that H. atriplicis was likely introduced to Ecuador in the 2000s or earlier, based on a collection dated 2006 found in the United States National Museum of Natural History.
ZooBank registration. urn:lsid:zoobank.org:pub:F43613E0-2854-44DE-9654-74138909717D
First record of the beekeeping pest Aethina tumida Murray (Coleoptera: Nitidulidae) for Honduras
(2024)
Aethina tumida Murray (Coleoptera: Nitidulidae) (also known as the small hive beetle), an important pest in apiaries, is reported from Honduras for the first time, new country record. The precise distribution in the country is unknown, and no damage related to it has been observed. Photographs are provided to aid in its identification. Differentiation of A. tumida from Aethina villosa Reitter and Aethina quadrata Sharp, which also occur in Honduras, is provided.
ZooBank registration. urn:lsid:zoobank.org:pub:DAF12C6A-0F8C-4151-9C4D-F191CCC4032F
Three species of false click beetles (Coleoptera: Eucnemidae) are added to the Nearctic fauna. One new species, Isorhipis bicolor, is described from a small series collected in Florida, U.S.A. Eighteen specimens collected from Georgia were identified as Dyscharachthis amplicollis (Fleutiaux), new U.S.A. records for a species previously taken from Japan and Southeast Asia. Examination of a series of eucnemids collected by Kyle Schnepp in Florida allowed me to revisit the Deltometopus fauna in eastern North America. Antennal structures present in a series of male specimens in the loan and past examined specimens are definitive enough to resurrect Deltometopus ereptus Bonvouloir, status restored, from synonymy with Deltometopus amoenicornis (Say). Species identification keys are provided for Deltometopus Bonvouloir and Isorhipis Boisduval and Lacordaire in the Nearctic region. Diagnostic differences are briefly noted for each of the three newly added species found in the United States. Images of three species and the related D. amoenicornis are provided.
ZooBank registration. urn:lsid:zoobank.org:pub:30F462F1-966F-4A4F-9D10-BF967AED6574