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- Küßner, M. (1)
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- Laakso, Markku (1)
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Bahls, Martin ; Lorenz, Matthias W. ; Dörr, Marcus ; Gao, Lu ; Kitagawa, Kazuo ; Tuomainen, Tomi-Pekka ; Agewall, Stefan ; Berenson, Gerald ; Catapano, Alberico L. ; Norata, Giuseppe D. ; Bots, Michiel L. ; Gilst, Wiek van ; Asselbergs, Folkert W. ; Brouwers, Frank P. ; Uthoff, Heiko ; Sander, Dirk ; Poppert, Holger ; Hecht Olsen, Michael ; Empana, Jean Philippe ; Schminke, Ulf ; Baldassarre, Damiano ; Veglia, Fabrizio ; Franco, Oscar H. ; Kavousi, Maryam ; Groot, Eric de ; Mathiesen, Ellisiv B. ; Grigore, Liliana ; Polak, Joseph F. ; Rundek, Tatjana ; Stehouwer, Coen D. A. ; Skilton, Michael R. ; Hatzitolios, Apostolos I. ; Savopoulos, Christos ; Ntaios, George ; Plichart, Matthieu ; McLachlan, Stela ; Lind, Lars ; Willeit, Peter ; Steinmetz, Helmuth ; Desvarieux, Moise ; Ikram, M. Arfan ; Johnsen, Stein Harald ; Schmidt, Caroline ; Willeit, Johann ; Ducimetiere, Pierre ; Price, Jackie F. ; Bergström, Göran ; Kauhanen, Jussi ; Kiechl, Stefan ; Sitzer, Matthias ; Bickel, Horst ; Sacco, Ralph L. ; Hofman, Albert ; Völzke, Henry ; Thompson, Simon G.
Aims: Averaged measurements, but not the progression based on multiple assessments of carotid intima-media thickness, (cIMT) are predictive of cardiovascular disease (CVD) events in individuals. Whether this is true for conventional risk factors is unclear.
Methods and results: An individual participant meta-analysis was used to associate the annualised progression of systolic blood pressure, total cholesterol, low-density lipoprotein cholesterol and high-density lipoprotein cholesterol with future cardiovascular disease risk in 13 prospective cohort studies of the PROG-IMT collaboration (n = 34,072). Follow-up data included information on a combined cardiovascular disease endpoint of myocardial infarction, stroke, or vascular death. In secondary analyses, annualised progression was replaced with average. Log hazard ratios per standard deviation difference were pooled across studies by a random effects meta-analysis. In primary analysis, the annualised progression of total cholesterol was marginally related to a higher cardiovascular disease risk (hazard ratio (HR) 1.04, 95% confidence interval (CI) 1.00 to 1.07). The annualised progression of systolic blood pressure, low-density lipoprotein cholesterol and high-density lipoprotein cholesterol was not associated with future cardiovascular disease risk. In secondary analysis, average systolic blood pressure (HR 1.20 95% CI 1.11 to 1.29) and low-density lipoprotein cholesterol (HR 1.09, 95% CI 1.02 to 1.16) were related to a greater, while high-density lipoprotein cholesterol (HR 0.92, 95% CI 0.88 to 0.97) was related to a lower risk of future cardiovascular disease events.
Conclusion: Averaged measurements of systolic blood pressure, low-density lipoprotein cholesterol and high-density lipoprotein cholesterol displayed significant linear relationships with the risk of future cardiovascular disease events. However, there was no clear association between the annualised progression of these conventional risk factors in individuals with the risk of future clinical endpoints.
Mason, Natasha L. ; Theunissen, Eef L. ; Hutten, Nadia R. P. W. ; Tse, Desmond H. Y. ; Tönnes, Stefan W. ; Jansen, Jacobus F. A. ; Stiers, Peter ; Ramaekers, Johannes G.
Cannabis is the most commonly used illicit drug in the world. However due to a changing legal landscape, and rising interest in therapeutic utility, there is an increasing trend in (long-term) use and possibly, cannabis impairment. Importantly, a growing body of evidence suggests regular cannabis users develop tolerance to the impairing, as well as the rewarding, effects of the drug. However, the neuroadaptations that may underlie cannabis tolerance remain unclear. Therefore, this double-blind, randomized, placebo controlled, cross-over study assessed the acute influence of cannabis on brain and behavioral outcomes in two distinct cannabis user groups. Twelve occasional (OUs) and 12 chronic (CUs) cannabis users received acute doses of cannabis (300 μg/kg THC) and placebo, and underwent ultra-high field functional magnetic resonance imaging (fMRI) and magnetic resonance spectroscopy (MRS). In OUs, cannabis induced significant neurometabolic alterations in reward circuitry, namely decrements in functional connectivity and increments in striatal glutamate concentrations, which were associated with increases in subjective high and decreases in performance on a sustained attention task. Such changes were absent in CUs. The finding that cannabis altered circuitry and distorted behavior in OUs, but not CUs, suggests reduced responsiveness of the reward circuitry to cannabis intoxication in chronic users Taken together, the results suggest a pharmacodynamic mechanism for the development of tolerance to cannabis impairment.
Lamm, Gerrit H. U. ; Marin, Egor ; Schellbach, Anna V. ; Stetsenko, Artem ; Alekseev, Alexey ; Bourenkov, Gleb ; Borshchevskiy, Valentin ; Asido, Marvin ; Agthe, Michael ; Engilberge, Sylvain ; Rose, Samuel L. ; Caramello, Nicolas ; Royant, Antoine ; Schneider, Thomas R. ; Bateman, Alex ; Mager, Thomas ; Moser, Tobias ; Wachtveitl, Josef ; Guskov, Albert ; Kovalev, Kirill
Microbial rhodopsins are omnipresent on Earth, however the vast majority of them remain uncharacterized. Here we describe a new rhodopsin clade from cold-adapted organisms and cold environments, such as glaciers, denoted as CryoRhodopsins (CryoRs). Our data suggest that CryoRs have photosensory activity. A distinguishing feature of the clade is the presence of a buried arginine residue close to the cytoplasmic face of its members. Combining single-particle cryo-electron microscopy and X-ray crystallography with the rhodopsin activation by light, we demonstrate that the arginine stabilizes a strongly blue-shifted intermediate of an extremely slow CryoRhodopsin photocycle. Together with extensive spectroscopic characterization, our investigations on CryoR1 and CryoR2 proteins reveal mechanisms of photoswitching in the newly identified clade and demonstrate principles of the adaptation of these rhodopsins to low temperatures.
Podoliak, Elizaveta ; Lamm, Gerrit H. U. ; Alekseev, Alexey ; Marin, Egor ; Schellbach, Anna V. ; Fedotov, Daniil A. ; Stetsenko, Artem ; Maliar, Nina ; Bourenkov, Gleb ; Balandin, Taras ; Baeken, Christian ; Astashkin, Roman ; Schneider, Thomas R. ; Bateman, Alex ; Wachtveitl, Josef ; Schapiro, Igor ; Busskamp, Volker ; Guskov, Albert ; Gordeliy, Valentin ; Kovalev, Kirill
Light-driven sodium pumps (NaRs) are unique ion-transporting microbial rhodopsins. The major group of NaRs is characterized by an NDQ motif and has two aspartic acid residues in the central region essential for sodium transport. Here we identified a new subgroup of the NDQ rhodopsins bearing an additional glutamic acid residue in the close vicinity to the retinal Schiff base. We thoroughly characterized a member of this subgroup, namely the protein ErNaR from Erythrobacter sp. HL-111 and showed that the additional glutamic acid results in almost complete loss of pH sensitivity for sodium-pumping activity, which is in contrast to previously studied NaRs. ErNaR is capable of transporting sodium efficiently even at acidic pH levels. X-ray crystallography and single particle cryo-electron microscopy reveal that the additional glutamic acid residue mediates the connection between the other two Schiff base counterions and strongly interacts with the aspartic acid of the characteristic NDQ motif. Hence, it reduces its pKa. Our findings shed light on a new subgroup of NaRs and might serve as a basis for their rational optimization for optogenetics.
Drewry, David H. ; Wells, Carrow I. ; Andrews, David M. ; Angell, Richard ; Al-Ali, Hassan ; Axtman, Alison D. ; Capuzz, Stephen J. ; Elkins, Jonathan M. ; Ettmayer, Peter ; Frederiksen, Mathias ; Gileadi, Opher ; Gray, Nathanael S. ; Hooper, Alice ; Knapp, Stefan ; Laufer, Stefan ; Lücking, Ulrich ; Michaelides, Michael ; Müller, Susanne ; Muratov, Eugene ; Denny, R. Aldrin ; Saikatendu, Kumar S. ; Treiber, Daniel K. ; Zuercher, William J. ; Willson, Timothy M.
Protein kinases are highly tractable targets for drug discovery. However, the biological function and therapeutic potential of the majority of the 500+ human protein kinases remains unknown. We have developed physical and virtual collections of small molecule inhibitors, which we call chemogenomic sets, that are designed to inhibit the catalytic function of almost half the human protein kinases. In this manuscript we share our progress towards generation of a comprehensive kinase chemogenomic set (KCGS), release kinome profiling data of a large inhibitor set (Published Kinase Inhibitor Set 2 (PKIS2)), and outline a process through which the community can openly collaborate to create a KCGS that probes the full complement of human protein kinases.
Lamm, Gerrit H. U. ; Marin, Egor ; Alekseev, Alexey ; Schellbach, Anna V. ; Stetsenko, Artem ; Bourenkov, Gleb ; Borshchevskiy, Valentin ; Asido, Marvin ; Agthe, Michael ; Engilberge, Sylvain ; Rose, Samuel L. ; Caramello, Nicolas ; Royant, Antoine ; Schneider, Thomas R. ; Bateman, Alex ; Mager, Thomas ; Moser, Tobias ; Wachtveitl, Josef ; Guskov, Albert ; Kovalev, Kirill
Microbial rhodopsins are omnipresent on Earth, however the vast majority of them remain uncharacterized. Here we describe a new rhodopsin group from cold-adapted organisms and cold environments, such as glaciers, denoted as CryoRhodopsins (CryoRs). Our data suggest that CryoRs have dual functionality switching between inward transmembrane proton translocation and photosensory activity, both of which can be modulated with UV light. CryoR1 exhibits two subpopulations in the ground state, which upon light activation lead to transient photocurrents of opposing polarities. A distinguishing feature of the group is the presence of a buried arginine residue close to the cytoplasmic face of its members. Combining single-particle cryo-electron microscopy and X-ray crystallography with the rhodopsin activation by lit, we demonstrate that the arginine stabilizes a UV-absorbing intermediate of an extremely slow CryoRhodopsin photocycle. Together with extensive spectroscopic characterization, our investigations on CryoR1 and CryoR2 proteins reveal mechanisms of photoswitching in the newly identified group and demonstrate principles of the adaptation of these rhodopsins to low temperatures.Microbial rhodopsins are omnipresent on Earth, however the vast majority of them remain uncharacterized. Here we describe a new rhodopsin group from cold-adapted organisms and cold environments, such as glaciers, denoted as CryoRhodopsins (CryoRs). Our data suggest that CryoRs have dual functionality switching between inward transmembrane proton translocation and photosensory activity, both of which can be modulated with UV light. CryoR1 exhibits two subpopulations in the ground state, which upon light activation lead to transient photocurrents of opposing polarities. A distinguishing feature of the group is the presence of a buried arginine residue close to the cytoplasmic face of its members. Combining single-particle cryo-electron microscopy and X-ray crystallography with the rhodopsin activation by light, we demonstrate that the arginine stabilizes a UV-absorbing intermediate of an extremely slow CryoRhodopsin photocycle. Together with extensive spectroscopic characterization, our investigations on CryoR1 and CryoR2 proteins reveal mechanisms of photoswitching in the newly identified group and demonstrate principles of the adaptation of these rhodopsins to low temperatures.
Kirkby, Jasper ; Duplissy, Jonathan ; Sengupta, Kamalika ; Frege, Carla ; Gordon, Hamish ; Williamson, Christina ; Heinritzi, Martin ; Simon, Mario ; Yan, Chao ; Almeida, Joao ; Tröstl, Jasmin ; Nieminen, Tuomo ; Ortega, Ismael K. ; Wagner, Robert ; Adamov, Alexey ; Amorim, Antonio ; Bernhammer, Anne-Kathrin ; Bianchi, Federico ; Breitenlechner, Martin ; Brilke, Sophia ; Chen, Xuemeng ; Craven, Jill ; Dias, Antonio ; Ehrhart, Sebastian ; Flagan, Richard C. ; Franchin, Alessandro ; Fuchs, Claudia ; Guida, Roberto ; Hakala, Jani ; Hoyle, Christopher Robert ; Jokinen, Tuija ; Junninen, Heikki ; Kangasluoma, Juha ; Kim, Jaeseok ; Krapf, Manuel ; Kürten, Christoph Andreas ; Laaksonen, Ari ; Lehtipalo, Katrianne ; Makhmutov, Vladimir ; Mathot, Serge ; Molteni, Ugo ; Onnela, Antti ; Peräkylä, Otso ; Piel, Felix ; Petäjä, Tuukka ; Praplan, Arnaud Patrick ; Pringle, Kirsty ; Rap, Alexandru ; Richards, Nigel A. D. ; Riipinen, Ilona ; Rissanen, Matti P. ; Rondo, Linda ; Sarnela, Nina ; Schobesberger, Siegfried ; Scott, Catherine E. ; Seinfeld, John H. ; Sipilä, Mikko ; Steiner, Gerhard ; Stozhkov, Yuri ; Stratmann, Frank ; Tomé, Antonio ; Virtanen, Annele ; Vogel, Alexander L. ; Wagner, Andrea Christine ; Wagner, Paul E. ; Weingartner, Ernest ; Wimmer, Daniela ; Winkler, Paul M. ; Ye, Penglin ; Zhang, Xuan ; Hansel, Armin ; Dommen, Josef ; Donahue, Neil McPherson ; Worsnop, Douglas R. ; Baltensperger, Urs ; Kulmala, Markku ; Carslaw, Kenneth S. ; Curtius, Joachim
Atmospheric aerosols and their effect on clouds are thought to be important for anthropogenic radiative forcing of the climate, yet remain poorly understood1. Globally, around half of cloud condensation nuclei originate from nucleation of atmospheric vapours2. It is thought that sulfuric acid is essential to initiate most particle formation in the atmosphere3,4, and that ions have a relatively minor role5. Some laboratory studies, however, have reported organic particle formation without the intentional addition of sulfuric acid, although contamination could not be excluded6,7. Here we present evidence for the formation of aerosol particles from highly oxidized biogenic vapours in the absence of sulfuric acid in a large chamber under atmospheric conditions. The highly oxygenated molecules (HOMs) are produced by ozonolysis of α-pinene. We find that ions from Galactic cosmic rays increase the nucleation rate by one to two orders of magnitude compared with neutral nucleation. Our experimental findings are supported by quantum chemical calculations of the cluster binding energies of representative HOMs. Ion-induced nucleation of pure organic particles constitutes a potentially widespread source of aerosol particles in terrestrial environments with low sulfuric acid pollution.
Almeida, Joao ; Schobesberger, Siegfried ; Kürten, Christoph Andreas ; Ortega, Ismael K. ; Kupiainen-Määttä, Oona ; Praplan, Arnaud Patrick ; Adamov, Alexey ; Amorim, Antonio ; Bianchi, Federico ; Breitenlechner, Martin ; David, André ; Dommen, Josef ; Donahue, Neil McPherson ; Downard, Andrew ; Dunne, Eimear M. ; Duplissy, Jonathan ; Ehrhart, Sebastian ; Flagan, Richard C. ; Franchin, Alessandro ; Guida, Roberto ; Hakala, Jani ; Hansel, Armin ; Heinritzi, Martin ; Henschel, Henning ; Jokinen, Tuija ; Junninen, Heikki ; Kajos, Maija ; Kangasluoma, Juha ; Keskinen, Helmi ; Kupc, Agnieszka ; Kurtén, Theo ; Kvashin, Alexander N. ; Laaksonen, Ari ; Lehtipalo, Katrianne ; Leiminger, Markus ; Leppä, Johannes ; Loukonen, Ville ; Makhmutov, Vladimir ; Mathot, Serge ; McGrath, Matthew J. ; Nieminen, Tuomo ; Olenius, Tinja ; Onnela, Antti ; Petäjä, Tuukka ; Riccobono, Francesco ; Riipinen, Ilona ; Rissanen, Matti P. ; Rondo, Linda ; Ruuskanen, Taina ; Santos, Filipe Duarte ; Sarnela, Nina ; Schallhart, Simon ; Schnitzhofer, Ralf ; Seinfeld, John H. ; Simon, Mario ; Sipilä, Mikko ; Stozhkov, Yuri ; Stratmann, Frank ; Tomé, Antonio ; Tröstl, Jasmin ; Tsagkogeorgas, Georgios ; Vaattovaara, Petri ; Viisanen, Yrjo ; Virtanen, Annele ; Vrtala, Aron ; Wagner, Paul E. ; Weingartner, Ernest ; Wex, Heike ; Williamson, Christina ; Wimmer, Daniela ; Ye, Penglin ; Yli-Juuti, Taina ; Carslaw, Kenneth S. ; Kulmala, Markku ; Curtius, Joachim ; Baltensperger, Urs ; Worsnop, Douglas R. ; Vehkamäki, Hanna ; Kirkby, Jasper
Nucleation of aerosol particles from trace atmospheric vapours is thought to provide up to half of global cloud condensation nuclei. Aerosols can cause a net cooling of climate by scattering sunlight and by leading to smaller but more numerous cloud droplets, which makes clouds brighter and extends their lifetimes. Atmospheric aerosols derived from human activities are thought to have compensated for a large fraction of the warming caused by greenhouse gases. However, despite its importance for climate, atmospheric nucleation is poorly understood. Recently, it has been shown that sulphuric acid and ammonia cannot explain particle formation rates observed in the lower atmosphere. It is thought that amines may enhance nucleation, but until now there has been no direct evidence for amine ternary nucleation under atmospheric conditions. Here we use the CLOUD (Cosmics Leaving Outdoor Droplets) chamber at CERN and find that dimethylamine above three parts per trillion by volume can enhance particle formation rates more than 1,000-fold compared with ammonia, sufficient to account for the particle formation rates observed in the atmosphere. Molecular analysis of the clusters reveals that the faster nucleation is explained by a base-stabilization mechanism involving acid–amine pairs, which strongly decrease evaporation. The ion-induced contribution is generally small, reflecting the high stability of sulphuric acid–dimethylamine clusters and indicating that galactic cosmic rays exert only a small influence on their formation, except at low overall formation rates. Our experimental measurements are well reproduced by a dynamical model based on quantum chemical calculations of binding energies of molecular clusters, without any fitted parameters. These results show that, in regions of the atmosphere near amine sources, both amines and sulphur dioxide should be considered when assessing the impact of anthropogenic activities on particle formation.
Lévesque, C. André ; Brouwer, Henk ; Cano, Liliana ; Hamilton, John P. ; Holt, Carson ; Huitema, Edgar ; Raffaele, Sylvain ; Robideau, Gregg P. ; Thines, Marco ; Win, Joe ; Zerillo, Marcelo M. ; Beakes, Gordon W. ; Boore, Jeffrey L. ; Busam, Dana ; Dumas, Bernard ; Ferriera, Steve ; Fürstenberg, Susan ; Gachon, Claire M. M. ; Gaulin, Elodie ; Govers, Francine ; Grenville-Briggs, Laura ; Horner, Neil ; Hostetler, Jessica ; Jiang, Rays H. Y. ; Johnson, Justin ; Krajaejun, Theerapong ; Lin, Haining ; Meijer, Harold J. G. ; Moore, Barry ; Morris, Paul ; Phuntmart, Vipaporn ; Puiu, Daniela ; Shetty, Jyoti ; Stajich, Jason E. ; Tripathy, Sucheta ; Wawra, Stephan ; West, Pieter van ; Whitty, Brett R. ; Coutinho, Pedro M. ; Henrissat, Bernard ; Martin, Frank ; Thomas, Paul D. ; Tyler, Brett M. ; Vries, Ronald Peter de ; Kamoun, Sophien ; Yandell, Mark ; Tisserat, Ned ; Buell, C. Robin
Background: Pythium ultimum (P. ultimum) is a ubiquitous oomycete plant pathogen responsible for a variety of diseases on a broad range of crop and ornamental species. Results: The P. ultimum genome (42.8 Mb) encodes 15,290 genes and has extensive sequence similarity and synteny with related Phytophthora species, including the potato blight pathogen Phytophthora infestans. Whole transcriptome sequencing revealed expression of 86% of genes, with detectable differential expression of suites of genes under abiotic stress and in the presence of a host. The predicted proteome includes a large repertoire of proteins involved in plant pathogen interactions although surprisingly, the P. ultimum genome does not encode any classical RXLR effectors and relatively few Crinkler genes in comparison to related phytopathogenic oomycetes. A lower number of enzymes involved in carbohydrate metabolism were present compared to Phytophthora species, with the notable absence of cutinases, suggesting a significant difference in virulence mechanisms between P. ultimum and more host specific oomycete species. Although we observed a high degree of orthology with Phytophthora genomes, there were novel features of the P. ultimum proteome including an expansion of genes involved in proteolysis and genes unique to Pythium. We identified a small gene family of cadherins, proteins involved in cell adhesion, the first report in a genome outside the metazoans. Conclusions: Access to the P. ultimum genome has revealed not only core pathogenic mechanisms within the oomycetes but also lineage specific genes associated with the alternative virulence and lifestyles found within the pythiaceous lineages compared to the Peronosporaceae.
Altınçekiç, Nadide ; Korn, Sophie Marianne ; Qureshi, Nusrat Shahin ; Dujardin, Marie ; Ninot-Pedrosa, Martí ; Abele, Rupert ; Abi Saad, Marie Jose ; Alfano, Caterina ; Almeida, Fabio C. L. ; Alshamleh, Islam ; Amorim, Gisele Cardoso de ; Anderson, Thomas K. ; Anobom, Cristiane D. ; Anorma, Chelsea ; Bains, Jasleen Kaur ; Bax, Adriaan ; Blackledge, Martin ; Blechar, Julius ; Böckmann, Anja ; Brigandat, Louis ; Bula, Anna ; Bütikofer, Matthias ; Camacho-Zarco, Aldo R. ; Carlomagno, Teresa ; Caruso, Icaro Putinhon ; Ceylan, Betül ; Chaikuad, Apirat ; Chu, Feixia ; Cole, Laura ; Crosby, Marquise G. ; De Jesus, Vanessa ; Dhamotharan, Karthikeyan ; Felli, Isabella C. ; Ferner, Jan ; Fleischmann, Yanick ; Fogeron, Marie-Laure ; Fourkiotis, Nikolaos K. ; Fuks, Christin ; Fürtig, Boris ; Gallo, Angelo ; Gande, Santosh L. ; Gerez, Juan Atilio ; Ghosh, Dhiman ; Gomes-Neto, Francisco ; Gorbatyuk, Oksana ; Guseva, Serafima ; Hacker, Carolin ; Häfner, Sabine ; Hao, Bing ; Hargittay, Bruno ; Henzler-Wildman, Katherine ; Hoch, Jeffrey C. ; Hohmann, Katharina Felicitas ; Hutchison, Marie T. ; Jaudzems, Kristaps ; Jović, Katarina ; Kaderli, Janina ; Kalnins, Gints ; Kanepe, Iveta ; Kirchdoerfer, Robert N. ; Kirkpatrick, John ; Knapp, Stefan ; Krishnathas, Robin ; Kutz, Felicitas ; Zur Lage, Susanne ; Lambertz, Roderick ; Lang, Andras ; Laurents, Douglas ; Lecoq, Lauriane ; Linhard, Verena ; Löhr, Frank ; Malki, Anas ; Bessa, Luiza Mamigonian ; Martin, Rachel W. ; Matzel, Tobias ; Maurin, Damien ; McNutt, Seth W. ; Mebus-Antunes, Nathane Cunha ; Meier, Beat H. ; Meiser, Nathalie ; Mompeán, Miguel ; Monaca, Elisa ; Montserret, Roland ; Perez, Laura Mariño ; Moser, Celine ; Muhle-Goll, Claudia ; Neves-Martins, Thais Cristtina ; Ni, Xiamonin ; Norton-Baker, Brenna ; Pierattelli, Roberta ; Pontoriero, Letizia ; Pustovalova, Yulia ; Ohlenschläger, Oliver ; Orts, Julien ; Poian, Andrea T. da ; Pyper, Dennis Joshua ; Richter, Christian ; Riek, Roland ; Rienstra, Chad M. ; Robertson, Angus ; Pinheiro, Anderson S. ; Sabbatella, Raffaele ; Salvi, Nicola ; Saxena, Krishna ; Schulte, Linda ; Schiavina, Marco ; Schwalbe, Harald ; Silber, Mara ; Almeida, Marcius da Silva ; Sprague-Piercy, Marc A. ; Spyroulias, Georgios A. ; Sreeramulu, Sridhar ; Tants, Jan-Niklas ; Tars, Kaspars ; Torres, Felix ; Töws, Sabrina ; Trevino, Miguel A. ; Trucks, Sven ; Tsika, Aikaterini C. ; Varga, Krisztina ; Wang, Ying ; Weber, Marco E. ; Weigand, Julia E. ; Wiedemann, Christoph ; Wirmer-Bartoschek, Julia ; Wirtz Martin, Maria Alexandra ; Zehnder, Johannes ; Hengesbach, Martin ; Schlundt, Andreas
The highly infectious disease COVID-19 caused by the Betacoronavirus SARS-CoV-2 poses a severe threat to humanity and demands the redirection of scientific efforts and criteria to organized research projects. The international COVID19-NMR consortium seeks to provide such new approaches by gathering scientific expertise worldwide. In particular, making available viral proteins and RNAs will pave the way to understanding the SARS-CoV-2 molecular components in detail. The research in COVID19-NMR and the resources provided through the consortium are fully disclosed to accelerate access and exploitation. NMR investigations of the viral molecular components are designated to provide the essential basis for further work, including macromolecular interaction studies and high-throughput drug screening. Here, we present the extensive catalog of a holistic SARS-CoV-2 protein preparation approach based on the consortium’s collective efforts. We provide protocols for the large-scale production of more than 80% of all SARS-CoV-2 proteins or essential parts of them. Several of the proteins were produced in more than one laboratory, demonstrating the high interoperability between NMR groups worldwide. For the majority of proteins, we can produce isotope-labeled samples of HSQC-grade. Together with several NMR chemical shift assignments made publicly available on covid19-nmr.com, we here provide highly valuable resources for the production of SARS-CoV-2 proteins in isotope-labeled form.
Meyer, Claus ; Hofmann, J ; Burmeister, Thomas ; Gröger, D ; Park, TS ; Emerenciano, M ; Pombo de Oliveira, M ; Renneville, A ; Macintyre, E ; Cavé, H ; Clappier, E ; Mass-Malo, K ; Zuna, J ; Trka, J ; De Braekeleer, E ; De Braekeleer, M ; Oh, SH ; Tsaur, G ; Fechina, L ; van der Velden, VH ; van Dongen, JJ ; Delabesse, E ; Binato, R ; Silva, ML ; Kustanovich, A ; Aleinikova, O ; Harris, MH ; Lund-Aho, T ; Juvonen, V ; Heidenreich, Olaf Torben ; Vormoor, J ; Choi, WW ; Jarosova, M ; Kolenova, A ; Bueno, C ; Menendez, P ; Wehner, S ; Eckert, Cornelia ; Talmant, P ; Tondeur, S ; Lippert, E ; Launay, E ; Henry, C ; Ballerini, P ; Lapillone, H ; Callanan, MB ; Cayuela, JM ; Herbaux, C ; Cazzaniga, G ; Kakadiya, PM ; Bohlander, Stefan Klaus ; Ahlmann, M ; Choi, JR ; Gameiro, P ; Lee, DS ; Krauter, J ; Cornillet-Lefebvre, P ; Te Kronnie, G ; Schäfer, BW ; Kubetzko, S ; Alonso, CN ; zur Stadt, U ; Sutton, R ; Venn, NC ; Izraeli, S ; Trakhtenbrot, L ; Madsen, HO ; Archer, P ; Hancock, J ; Cerveira, N ; Teixeira, MR ; Lo Nigro, L ; Möricke, A ; Stanulla, M ; Schrappe, M ; Sedék, L ; Szczepański, T ; Zwaan, CM ; Coenen, EA ; van den Heuvel-Eibrink, MM ; Strehl, S ; Dworzak, Michael N. ; Panzer-Grümayer, Renate ; Dingermann, Theodor ; Klingebiel, Thomas ; Marschalek, Rolf
Chromosomal rearrangements of the human MLL (mixed lineage leukemia) gene are associated with high-risk infant, pediatric, adult and therapy-induced acute leukemias. We used long-distance inverse-polymerase chain reaction to characterize the chromosomal rearrangement of individual acute leukemia patients. We present data of the molecular characterization of 1590 MLL-rearranged biopsy samples obtained from acute leukemia patients. The precise localization of genomic breakpoints within the MLL gene and the involved translocation partner genes (TPGs) were determined and novel TPGs identified. All patients were classified according to their gender (852 females and 745 males), age at diagnosis (558 infant, 416 pediatric and 616 adult leukemia patients) and other clinical criteria. Combined data of our study and recently published data revealed a total of 121 different MLL rearrangements, of which 79 TPGs are now characterized at the molecular level. However, only seven rearrangements seem to be predominantly associated with illegitimate recombinations of the MLL gene (~ 90%): AFF1/AF4, MLLT3/AF9, MLLT1/ENL, MLLT10/AF10, ELL, partial tandem duplications (MLL PTDs) and MLLT4/AF6, respectively. The MLL breakpoint distributions for all clinical relevant subtypes (gender, disease type, age at diagnosis, reciprocal, complex and therapy-induced translocations) are presented. Finally, we present the extending network of reciprocal MLL fusions deriving from complex rearrangements.
Bromus racemosus L. is a rather rare grass species of moist meadows. It has strongly decreased in the course of the 20th century due to intensification of agricultural grassland management, and is therefore included in Red Lists of several European countries. Its winter annual life-cycle is remarkable for a species of permanent grasslands.
The aim of this study is to determine the habitat preference and optimal management of B. racemosus in the Netherlands and surrounding countries. Vegetation, soil and hydrological data from 28 sites in the Netherlands have been compared with B. racemosus cover, and with vegetation data from surrounding countries. The results indicate that B. racemosus is characteristic of Molinio-Arrhenatheretea meadows with good mineralisation and aftermath grazing. The optimum lies in grasslands of the alliance Alopecurion pratensis (Deschampsion cespitosae), but the species ranges from wetter Calthion palustris meadows to drier Arrhenatherion elatioris and Cynosurion cristati grasslands. It prefers intermediate nutrient levels and hydrological conditions (mesic sites), but within this range the highest cover is found in relatively nutrient rich and dry sites. Because of the absence of a seedbank and a low dispersal capability, B. racemosus is vulnerable to changes in grassland management. A management of mowing after 15 June and aftermath grazing is most suitable, since it enables fruit ripening and the maintenance of an open sward, needed for germination and development. The risk of extinction is likely to be higher in flat polders than in floodplain sites with natural relief, where the species may shift between belts in different years.
Mason, Natasha L. ; Theunissen, Eef L. ; Hutten, Nadia R. P. W. ; Tse, Desmond H.Y. ; Tönnes, Stefan W. ; Jansen, Jacobus F. A. ; Stiers, Peter ; Ramaekers, Johannes G.
Cannabis is the most commonly used illicit drug in the world. However, because of a changing legal landscape and rising interest in therapeutic utility, there is an increasing trend in (long-term) use and possibly cannabis impairment. Importantly, a growing body of evidence suggests that regular cannabis users develop tolerance to the impairing, as well as the rewarding, effects of the drug. However, the neuroadaptations that may underlie cannabis tolerance remain unclear. Therefore, this double-blind, randomized, placebo-controlled, cross-over study assessed the acute influence of cannabis on the brain and behavioral outcomes in two distinct cannabis user groups. Twelve occasional and 12 chronic cannabis users received acute doses of cannabis (300-μg/kg delta-9-tetrahydrocannabinol) and placebo and underwent ultrahigh field functional magnetic resonance imaging and magnetic resonance spectroscopy. In occasional users, cannabis induced significant neurometabolic alterations in reward circuitry, namely, decrements in functional connectivity and increments in striatal glutamate concentrations, which were associated with increases in subjective high and decreases in performance on a sustained attention task. Such changes were absent in chronic users. The finding that cannabis altered circuitry and distorted behavior in occasional, but not chronic users, suggests reduced responsiveness of the reward circuitry to cannabis intoxication in chronic users. Taken together, the results suggest a pharmacodynamic mechanism for the development of tolerance to cannabis impairment, of which is important to understand in the context of the long-term therapeutic use of cannabis-based medications, as well as in the context of public health and safety of cannabis use when performing day-to-day operations.
Curius punctatus (Fisher) : new combination (Coleoptera: Cerambycidae: Cerambycinae: Curiini)
(2005)
Stöver, Timo ; Dazert, Stefan ; Plontke, Stefan K.-R. ; Kramer, S. ; Ambrosch, Petra ; Ahrens, Christoph ; Betz, Christian Stefan ; Beutner, Dirk ; Bohr, Christopher ; Bruchhage, Karl-Ludwig ; Canis, Martin ; Dietz, Andreas ; Guntinas-Lichius, Orlando ; Hagen, Rudolf ; Hosemann, Werner ; Iro, Heinrich ; Klußmann, Jens Peter ; Knopf, Andreas ; Lang, Stephan ; Leinung, Martin ; Lenarz, Thomas ; Löwenheim, Hubert Martin ; Matthias, Christian ; Mlynski, Robert Arndt ; Olze, Heidi ; Park, Jonas Jae-Hyun ; Plinkert, Peter K. ; Radeloff, Andreas Daniel ; Rotter, Nicole ; Rudack, Claudia ; Bozzato, Alessandro ; Schipper, Jörg H. ; Schrader, Martin ; Schuler, Patrick ; Strieth, Sebastian ; Stuck, Boris ; Volkenstein, Stefan ; Westhofen, Martin ; Wolf, Gregor ; Wollenberg, Barbara ; Zahnert, Thomas ; Zenk, Johannes ; Hoffmann, Thomas K.
Hintergrund: Ab Frühjahr 2020 kam es zur weltweiten Verbreitung von SARS-CoV‑2 mit der heute als erste Welle der Pandemie bezeichneten Phase ab März 2020. Diese resultierte an vielen Kliniken in Umstrukturierungen und Ressourcenverschiebungen. Ziel unserer Arbeit war die Erfassung der Auswirkungen der Pandemie auf die universitäre Hals-Nasen-Ohren(HNO)-Heilkunde für die Forschung, Lehre und Weiterbildung. Material und Methoden: Die Direktorinnen und Direktoren der 39 Universitäts-HNO-Kliniken in Deutschland wurden mithilfe einer strukturierten Online-Befragung zu den Auswirkungen der Pandemie im Zeitraum von März bis April 2020 auf die Forschung, Lehre und die Weiterbildung befragt. Ergebnisse: Alle 39 Direktorinnen und Direktoren beteiligten sich an der Umfrage. Hiervon gaben 74,4 % (29/39) an, dass es zu einer Verschlechterung ihrer Forschungstätigkeit infolge der Pandemie gekommen sei. Von 61,5 % (24/39) wurde berichtet, dass pandemiebezogene Forschungsaspekte aufgegriffen wurden. Von allen Kliniken wurde eine Einschränkung der Präsenzlehre berichtet und 97,5 % (38/39) führten neue digitale Lehrformate ein. Im Beobachtungszeitraum sahen 74,4 % der Klinikdirektoren die Weiterbildung der Assistenten nicht gefährdet. Schlussfolgerung: Die Ergebnisse geben einen Einblick in die heterogenen Auswirkungen der Pandemie. Die kurzfristige Bearbeitung pandemiebezogener Forschungsthemen und die Einführung innovativer digitaler Konzepte für die studentische Lehre belegt eindrücklich das große innovative Potenzial und die schnelle Reaktionsfähigkeit der HNO-Universitätskliniken, um auch während der Pandemie ihre Aufgaben in der Forschung, Lehre und Weiterbildung bestmöglich zu erfüllen.
The recruitment processes and resulting distribution pattern of bird-dispersed Canary Island Date Palm, Phoenix canariensis (family Arecaceae) in a riverine forest setting are described. All palms on a near-urban peninsula of the Murrumbidgee River near Hay, New South Wales were GPS mapped and classified into height-dependent age categories. The distribution of the plants was examined spatially in relation to possible source palms and in relation to elevation with regard to flooding levels. Successful recruitment is subject to a range of environmental parameters, primarily palatability to vectors and seedling mortality due to lack of moisture, frost or grazing by herbivores. If a seedling survives that critical period of the first 18 months, long-term success is (almost) guaranteed, unless catastrophic events (bushfires, prolonged flooding) intervene. Based on the findings, a conceptual model for the recruitment of Phoenix canariensis palms is provided. Even though the palms produce fruit for much of the year (March–December), the time window for successful recruitment is restricted to a period from August to mid-September with short shoulder periods on either side.
Huber, Bernhard A. ; Petcharad, Booppa ; Leh Moi Ung, Charles ; Koh, Joseph K.H. ; Ghazali, Amir R.M.
The Southeast Asian Pholcus halabala species group is revised and re-delimited, based mainly on field observations (life color pattern, web design, position of egg-sac when carried by female, microhabitat) and ultrastructure (silk spigots, modifications of male cheliceral apophyses). The core group includes six leafdwelling species that have distinctive color patterns in life specimens (black and white or yellowish abdominal marks, dark pattern on posterior half of carapace) and build round to oval silk platforms on the undersides of leaves. Seven further species are tentatively assigned to the group pending further study. Several species originally assigned to the Pholcus halabala group are transferred to three newly proposed species groups, the Ph. krabi, Ph. buatong, and Ph. andulau groups. Nine species are newly described, four in the Ph. halabala group (Ph. khaolek Huber, sp. nov.; Ph. kuhapimuk Huber, sp. nov.; Ph. lintang Huber, sp. nov.; Ph. ubin Huber, sp. nov.); three in the Ph. krabi group (Ph. kipungit Huber, sp. nov.; Ph. krabi Huber, sp. nov.; Ph. narathiwat Huber, sp. nov.); one in the Ph. buatong group (Ph. buatong Huber, sp. nov.); and one in the Ph. andulau group (Ph. lambir Huber, sp. nov.). The females of Ph. satun Huber, 2011 and Ph. schwendingeri Huber, 2011 (both members of the buatong group) are newly described.