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Die Glucosinolate (GS) sind charakteristische sekundäre Pflanzeninhaltsstoffe, vorkommend in der Gruppe der Brassicaceae und anderen Familien der Ordnung Brassicales (Halkier & Gershenzon 2006). Bisher sind mehr als 120 verschiedene GS beschrieben, welche eine gemeinsame Grundstruktur mit variablem Seitenkettenrest kennzeichnet (Fahey et al. 2001). Je nach chemischer Natur der Seitenkette werden die GS in aliphatische, aromatische und Indolyl-GS unterteilt. Alle GS-enthaltenden Pflanzen besitzen zusätzlich räumlich getrennt von den GS hydrolysierende Enzyme, so genannte Myrosinasen. Erst nach Zellbeschädigung kommen die beiden Komponenten in Kontakt zueinander und weitere biologisch aktive Verbindungen wie z. B. Isothiocyanate und Nitrile werden freigesetzt (Rask et al. 2000). Das GS-Myrosinase-System ist ein effektives Abwehrsystem insbesondere gegenüber generalistischen Insekten, Pathogenen und Bakterien, allerdings dienen vielen spezialisierten Insekten diese Stoffe zur Wirtspflanzenfindung und -akzeptanz (Renwick 2002, Halkier & Gershenzon 2006). Die Modellpflanze Arabidopsis thaliana L. enthält als Vertreter der Brassicaceae GS als Fraßabwehrstoffe. In A. thaliana als auch in Brassica ist das aliphatische GS-Muster sehr variabel, wohingegen die Indolyl-GS weit verbreitet sind (Kliebenstein 2001, Li & Quiros 2002). Allerdings fehlen Studien zur Funktion dieser GS-Klassen innerhalb der Pflanzenresistenz gegenüber Phytophagenfraß. Deshalb wurden zwei A. thaliana -Mutanten mit verändertem aliphatischen bzw. Indolyl-GS-Profil im Vergleich zu Columbia WT auf die Wirtspflanzeneignung für drei verschieden spezialisierte Lepidoptera-Arten getestet.
Solitary bees are important pollinators of flowers. Besides nectar they collect pollen at flowers mainly to provide their larvae with food. Many bee species collect pollen only on a few closely related plant species (oligolecty) (Müller & al. 1997). Little is known about the visual and olfactorial signals they use for host-plant finding (Wcislo & Cane 1996). However, bees can olfactorily distinguish between different pollen species (von Frisch 1923), and a species-specific chemistry of pollen odour is known for some plant species (Bergström & al. 1995, Dobson & al. 1999). Further, it was shown that naïve oligolectic bees recognize their host-plant on the basis pollen volatiles (Dobson & Bergström 2000) and that flower-experienced bees could use pollen odours to assess pollen availability (Dobson & al. 1999). Besides scent, also visual cues are of relevance for host-plant finding, and bees orientate especially spectral contrasts. Biotests with dummy flowers revealed that colour contrast and not intensity and dominant wavelengths are influencing innate behavioural responses (Lunau 1990). Further it was shown that naïve bumblebees were most motivated to land on a flower when visual stimuli from the antheres are combined with olfactorial stimuli from the pollen (1992). We choose Osmia adunca P., which is highly specialized on Echium L., as a model to investigate the importance of floral cues for an oligolectic bee. Because bees learn to associate odours with reward more rapidly than visual cues (Menzel 1985), we hypothesize that scent plays a major role in attraction flower-experienced O. adunca females. We used gas chromatography to compare the scent of three Echium species with the scent of a closely related Anchusa species, and a spectrometer to compare the colour of the three Echium species. Additionally we conducted a biotest to determine the importance of visual and olfactorial signals of Echium for host-plant finding of experienced O. adunca females.
Die Entwicklung einer Population des Kalifornischen Blütenthrips (Frankliniella occidentalis) in neuen oder ungewohnten Kulturpflanzenbeständen ist häufig anfangs sehr verhalten, um dann schlagartig zu kulminieren. Nicht selten werden dadurch Bekämpfungsmaßnahmen zu spät eingeleitet, was sich nachteilig auf deren Erfolg auswirkt. Anhand eines standardisierten Biotests im Labor sollte der Einfluss von verschiedenen Wirtspflanzen auf die Populationsentwicklung des Schädlings betrachtet werden.
In agroecological research it has been appreciated only fairly recently that plant-insect interactions and other ecological processes depend on scales much larger than a single habitat (Wiens et al. 1997). Crop-pest interactions have mainly been studied on single pest species by focusing either on the impact of field parameters or on landscape structure but only rarely included both factors (Östman et al. 2001). Here we investigated how the abundances of three major insect pest species in oilseed rape (OSR) responded to field parameters and landscape characteristics at various spatial scales. Pest species considered in the current study include (i) ceutorhynchid stem weevils that lay eggs in leaf petioles or midribs of OSR plants while the larvae tunnel in the stems; (ii) pollen beetles that feed on pollen and destroy flower buds and (iii) brassica pod midge that lay eggs into OSR pods where the hatched larvae consume the seeds as well as tissue of the pod walls and cause the pods to split prematurely (Alford et al. 2003). Studying these different groups of pests is especially important because they attack different parts of the crop, use different habitats as overwintering sites and also differ in their mobility; with the exception of pollen beetles these pest species have never been studied in a landscape context. The specific objectives of this study were to determine (i) whether the major OSR pest species differ in their relation to field and landscape characteristics and (ii) at which spatial scales landscape variables are effective.
Agricultural intensification is a major threat to biological diversity worldwide. Land management activities enhancing landscape diversity are therefore regarded as a key strategy to halt species loss in cultural landscapes. Diverse and abundant communities of predatory arthropods, e.g. spiders (Araneae), have a high potential to suppress pest populations (Symondson et al. 2002) and could therefore contribute to allow reductions of pesticide use. Crop fields alone are usually not able to sustain diverse and individual-rich populations of predatory arthropods, because agricultural management results in disturbances and habitat deteriorations (harvest, soil cultivation, pesticide application) that kill or drive away large parts of the populations. Therefore semi-natural and perennial habitats in agricultural landscapes are considered to be of great importance for beneficial arthropods. On the one hand they offer refuge habitats in times when arable fields are hostile, e.g. fields with bare grounds during winter (Schmidt & Tscharntke 2005). On the other hand, viable populations of predatory arthropods in semi-natural habitats can serve as sources for (re-) colonisation of arable fields (Schmidt & Tscharntke 2005). Because of these exchanges between crop and non-crop areas it is important to include the surrounding landscape when investigating field-scale processes. We investigated the relations between spider assemblages in arable fields and the surrounding landscape in 29 fields of winter oilseed rape (OSR) in an agricultural landscape in eastern Austria. The objectives of this study were to estimate (1) how much spider assemblages in oilseed rape fields are influenced by the surrounding landscape, (2) the relative influence of landscape variables compared to field-scale variables and (3) at which spatial scales landscape variables are effective.
The lower wood-feeding Australian termite Mastotermes darwiniensis Froggatt (Fig. 1) is the only living member of the family Mastotermitidae. The complex symbiotic hindgut flora consists of protozoa (formerly named Archaezoa; Cleveland & Grimstone 1964; Brugerolle & al. 1994; Berchtold & König 1995; Fröhlich & König 1999a, b), bacteria (Berchtold & König 1996; Berchtold & al. 1999), archaea (Fröhlich & König 1999a, b) and yeasts (Prillinger & al. 1996; Schäfer & al. 1996). The digestive system of Mastotermes darwiniensis consists of the foregut with the crop and the gizzard, the midgut, and the hindgut (Noirot & Noirot-Timothée 1969; 1995). The hindgut consists of five segments (P1 – P5): the proctodeal segment, the enteric valve, the paunch, the colon and the rectum. The paunch is the main microbial fermentation chamber, but the colon also contains microorganisms. The paunch is subdivided into a dilated thin-walled region (P3a) and a thick walled more tubular region (P3b) (Fig. 1c). In the case of Mastotermes darwiniensis oxygen diffusion gradients could be detected up to 100 μm below the epithelium (Berchtold & al., 1999).
Verbreitung, Nestdichten und Ökologie hügelbauender Waldameisen der Gattung Formica im Tiroler Wald
(2008)
Trotz der erheblichen waldökologischen und naturschutzfachlichen Bedeutung hügelbauender Formica-Arten waren Informationen über aktuelle Verbreitung, ökologische Einnischung und eventuelle Gefährdung in Tirol als lückenhaft zu bezeichnen. Aus diesem Grund wurde in enger Zusammenarbeit mit der Landesforstdirektion Tirol und im Auftrag der Tiroler Landesregierung, Abtlg. Umweltschutz, eine landesweite Erhebung des Waldameisenbestandes im Zuge routinemäßig durchgeführter forstlicher Inventuren von 2004 bis 2006 durchgeführt (Glaser 2004, 2005, 2006). Dabei ergab die Analyse der Waldameisenbesiedlung in Abhängigkeit zu ebenfalls erhobenen forstlicher Parameter Hinweise auf die Habitatpräferenzen einzelner Arten.
Ökologischer Vergleich der Spinnenfauna (Arachnida: Araneae) von Energiewäldern und Ackerland
(2008)
Kurzumtriebsflächen, oder auch Energiewälder bzw. Schnellwuchsplantagen genannt, sind Flächen mit schnellwachsenden Baumarten (z. B. Hybridpappeln), die in kurzen Umtriebszeiten von 2 bis 10 Jahren bewirtschaftet werden. Nach der zyklischen Ernte treiben die Bäume wieder aus (Stockausschlag) und können nach einigen Jahren erneut genutzt werden. Das Prinzip der schnellwüchsigen Baumarten ist dem früher weit verbreiteten Niederwald ähnlich, allerdings mit dem Unterschied, dass der Energiewald in der Regel auf stillgelegten landwirtschaftlichen Flächen angebaut wird und bei der Begründung züchterisch bearbeitetes Material von Pappel, Aspe und Weide verwendet wird. Kurzumtriebsflächen dienen vorwiegend der Holzproduktion (v. a. Hackschnitzel) zur Gewinnung von (Wärme-)Energie. Spinnen (Arachnida: Araneae) kommen in allen terrestrischen Lebensräumen in großer Artenzahl vor. Allein auf dem Gebiet Deutschlands sind derzeit über 1000 verschiedene Spinnenarten bekannt (Blick & al. 2004). Spinnen ernähren sich räuberisch, wobei ihre Beutetiere meist andere Arthropoden darstellen. Aufgrund der spezifischen Ansprüche vieler Arten an bestimmte (Mikro-)Habitate und damit an spezielle Lebensraumanforderungen eignen sie sich besonders für die qualitative Charakterisierung von Groß- und Kleinlebensräumen. Auch die Veränderung von Lebensräumen durch verschiedene Einflüsse (z. B. Änderung der Nutzungsintensität, Schadstoffimmissionen, Entwässerung, Sukzession, etc.) kann durch Spinnen gut bewertet und dokumentiert werden. Sie werden deshalb häufig bei der Beurteilung der Schutzwürdigkeit von Flächen, bei Eingriffsgutachten, Erfolgskontrollen, Umweltverträglichkeitsuntersuchungen sowie zum Biotopmonitoring herangezogen und zunehmend als Indikatorgruppe für die Bewertung von Habitaten verwendet (z. B. Clausen 1986, Gack & al. 1999). Bisher gibt es nur wenige publizierte Studien zum Vorkommen und zu den Entwicklungstendenzen der epigäischen Arthropodenfauna auf Energiewaldflächen (Blick & Burger 2002, Blick & al. 2003). Mit der vorliegende Untersuchung sollen daher exemplarisch die Auswirkungen solcher Kurzumtriebs-Versuchsflächen auf die epigäische Raubarthropodenfauna beleuchtet werden. Als eine der wichtigsten Prädatorengruppen wurde die Ordnung der Spinnen (Araneae) gewählt, die aufgrund der hohen Arten- und Individuenzahl sowie oft spezifischer Biotopansprüche der einzelnen Arten besonders geeignet erscheint. Besonderes Interesse erweckt bei vorliegender Untersuchung die Fragestellung, ob sich innerhalb weniger Jahre waldtypische Spinnenarten einstellen und inwieweit sich die Spinnenfauna bezüglich des Ausgangsstadiums „Acker“ verändert (Sukzession). Darüber hinaus wurde ermittelt, welche Auswirkungen die Ernte eines aufstockenden Energiewaldes auf die Spinnenzönose haben kann.
Offenlandschaften, insbesondere vegetationsarme bzw. von Sandmagerrasen bewachsene Binnendünen stellen seltene Lebensräume dar, die einer Vielzahl spezialisierter Arten einen Lebensraum bieten. Solche Ökosysteme sind in der Oberlausitz unter anderem durch Truppenübungsplätze entstanden und gehen nach Nutzungsaufgabe durch Sukzession verloren. Dadurch verlieren verschiedene stenöke Tierarten ihren Lebensraum. Dies gilt im besonderen Maße für Myrmeleon bore, eine Art, die nach Gepp & Hölzel (1996) offene Sandflächen benötigt. In gewissem Maße profitiert auch Euroleon nostras, der aber auch andere Biotope besiedelt, so lange genügend offene Fläche mit rieselfähigem Substrat, sowie Witterungsschutz vorliegt. Hier soll der Einfluss der Sukzession auf die Verbreitung der Arten untersucht werden, um somit insbesondere Hinweise zum Erhalt der Populationen zu gewinnen.
In our present-day landscape in Central Europe major parts of the xylobiontic especially of the saproxylic beetle fauna belong to the group of endangered species assemblages (Speight 1989, Geiser 1994). Oaks, in Central Europe mainly Quercus robur and Q. petraea, are well known for their large number of associated insect species and harbour the highest beetle diversity, especially for dead wood inhabiting species, of all broadleaved tree species in this region (e.g. Palm 1959). A characteristic species associated with oaks in its life-cycle is the endangered Great Capricorn Cerambyx cerdo. C. cerdo is one of the protected species explicitly named in the Habitats Directive of the European Union with the goal of maintaining existing populations and establishing long-term survival (Council of the European Communities 1992). The last remaining colonised areas of this longhorn beetle in Central Europe are well known for the enormous number of very rare xylobiontic beetle species. Thus, we are interested in the following research questions: 1) Are there typical species associated with C. cerdo? 2) If so, what kind of relationship do these associated species have to C. cerdo from a nature conservation point of view?
A high-precision pressure probe is described which allows non-invasive online-monitoring of the water relations of intact leaves. Real-time recording of the leaf water status occurred by data transfer to an Internet server. The leaf patch clamp pressure probe measures the attenuated pressure, Pp, of a leaf patch in response to a constant clamp pressure, Pclamp. Pp is sensed by a miniaturized silicone pressure sensor integrated into the device. The magnitude of Pp is dictated by the transfer function of the leaf, Tf, which is a function of leaf patch volume and ultimately of cell turgor pressure, Pc, as shown theoretically. The power function Tf=f(Pc) theoretically derived was experimentally confirmed by concomitant Pp and Pc measurements on intact leaflets of the liana Tetrastigma voinierianum under greenhouse conditions. Simultaneous Pp recordings on leaflets up to 10 m height above ground demonstrated that changes in Tf induced by Pc changes due to changes of microclimate and/or of the irrigation regime were sensitively reflected in corresponding changes of Pp. Analysis of the data show that transpirational water loss during the morning hours was associated with a transient rise in turgor pressure gradients within the leaflets. Subsequent recovery of turgescence during the afternoon was much faster than the preceding transpiration-induced water loss if the plants were well irrigated. Our data show the enormous potential of the leaf patch clamp pressure probe for leaf water studies including unravelling of the hydraulic communication between neighbouring leaves and over long distances within tall plants (trees).
Chloroplast function depends on the translocation of cytosolically synthesized precursor proteins into the organelle. The recognition and transfer of most precursor proteins across the outer membrane depend on a membrane inserted complex. Two receptor components of this complex, Toc34 and Toc159, are GTPases, which can be phosphorylated by kinases present in the hosting membrane. However, the physiological function of phosphorylation is not yet understood in detail. It is demonstrated that both receptors are phosphorylated within their G-domains. In vitro, the phosphorylation of Toc34 disrupts both homo- and heterodimerization of the G-domains as determined using a phospho-mimicking mutant. In endogenous membranes this mutation or phosphorylation of the wild-type receptor disturbs the association of Toc34, but not of Toc159 with the translocation pore. Therefore, phosphorylation serves as an inhibitor for the association of Toc34 with other components of the complex and phosphorylation can now be discussed as a mechanism to exchange different isoforms of Toc34 within this ensemble.
Arabidopsis cell walls contain large amounts of pectins and hemicelluloses, which are predominantly synthesized via the common precursor UDP-glucuronic acid. The major enzyme for the formation of this nucleotide-sugar is UDP-glucose dehydrogenase, catalysing the irreversible oxidation of UDP-glucose into UDP-glucuronic acid. Four functional gene family members and one pseudogene are present in the Arabidopsis genome, and they show distinct tissue-specific expression patterns during plant development. The analyses of reporter gene lines indicate gene expression of UDP-glucose dehydrogenases in growing tissues. The biochemical characterization of the different isoforms shows equal affinities for the cofactor NAD+ (~40 µM) but variable affinities for the substrate UDP-glucose (120–335 µM) and different catalytic constants, suggesting a regulatory role for the different isoforms in carbon partitioning between cell wall formation and sucrose synthesis as the second major UDP-glucose-consuming pathway. UDP-glucose dehydrogenase is feedback inhibited by UDP-xylose. The relatively (compared with a soybean UDP-glucose dehydrogenase) low affinity of the enzymes for the substrate UDP-glucose is paralleled by the weak inhibition of the enzymes by UDP-xylose. The four Arabidopsis UDP-glucose dehydrogenase isoforms oxidize only UDP-glucose as a substrate. Nucleotide-sugars, which are converted by similar enzymes in bacteria, are not accepted as substrates for the Arabidopsis enzymes.
Gene trapping is used to introduce insertional mutations into genes of mouse embryonic stem cells (ESCs). It is performed with gene trap vectors that simultaneously mutate and report the expression of the endogenous gene at the site of insertion and provide a DNA tag for rapid identification of the disrupted gene. Gene traps have been employed worldwide to assemble libraries of mouse ESC lines harboring mutations in single genes, which can be used to make mutant mice. However, most of the employed gene trap vectors require gene expression for reporting a gene trap event and therefore genes that are poorly expressed may be under-represented in the existing libraries. To address this problem, we have developed a novel class of gene trap vectors that can induce gene expression at insertion sites, thereby bypassing the problem of intrinsic poor expression. We show here that the insertion of the osteopontin enhancer into several conventional gene trap vectors significantly increases the gene trapping efficiency in high-throughput screens and facilitates the recovery of poorly expressed genes.
Comparative studies suggest that at least some bird species have evolved mental skills similar to those found in humans and apes. This is indicated by feats such as tool use, episodic-like memory, and the ability to use one´s own experience in predicting the behavior of conspecifics. It is, however, not yet clear whether these skills are accompanied by an understanding of the self. In apes, self-directed behavior in response to a mirror has been taken as evidence of self-recognition. We investigated mirror-induced behavior in the magpie, a songbird species from the crow family. As in apes, some individuals behaved in front of the mirror as if they were testing behavioral contingencies. When provided with a mark, magpies showed spontaneous mark-directed behavior. Our findings provide the first evidence of mirror self-recognition in a non-mammalian species. They suggest that essential components of human self-recognition have evolved independently in different vertebrate classes with a separate evolutionary history.
Ribosome biogenesis in eukaryotes requires the participation of a large number of ribosome assembly factors. The highly conserved eukaryotic nucleolar protein Nep1 has an essential but unknown function in 18S rRNA processing and ribosome biogenesis. In Saccharomyces cerevisiae the malfunction of a temperature-sensitive Nep1 protein (nep1-1ts) was suppressed by the addition of S-adenosylmethionine (SAM). This suggests the participation of Nep1 in a methyltransferase reaction during ribosome biogenesis. In addition, yeast Nep1 binds to a 6-nt RNA-binding motif also found in 18S rRNA and facilitates the incorporation of ribosomal protein Rps19 during the formation of pre-ribosomes. Here, we present the X-ray structure of the Nep1 homolog from the archaebacterium Methanocaldococcus jannaschii in its free form (2.2 Å resolution) and bound to the S-adenosylmethionine analog S-adenosylhomocysteine (SAH, 2.15 Å resolution) and the antibiotic and general methyltransferase inhibitor sinefungin (2.25 Å resolution). The structure reveals a fold which is very similar to the conserved core fold of the SPOUT-class methyltransferases but contains a novel extension of this common core fold. SAH and sinefungin bind to Nep1 at a preformed binding site that is topologically equivalent to the cofactor-binding site in other SPOUT-class methyltransferases. Therefore, our structures together with previous genetic data suggest that Nep1 is a genuine rRNA methyltransferase.
Many new gene copies emerged by gene duplication in hominoids, but little is known with respect to their functional evolution. Glutamate dehydrogenase (GLUD) is an enzyme central to the glutamate and energy metabolism of the cell. In addition to the single, GLUD-encoding gene present in all mammals (GLUD1), humans and apes acquired a second GLUD gene (GLUD2) through retroduplication of GLUD1, which codes for an enzyme with unique, potentially brain-adapted properties. Here we show that whereas the GLUD1 parental protein localizes to mitochondria and the cytoplasm, GLUD2 is specifically targeted to mitochondria. Using evolutionary analysis and resurrected ancestral protein variants, we demonstrate that the enhanced mitochondrial targeting specificity of GLUD2 is due to a single positively selected glutamic acid-to-lysine substitution, which was fixed in the N-terminal mitochondrial targeting sequence (MTS) of GLUD2 soon after the duplication event in the hominoid ancestor ~18–25 million years ago. This MTS substitution arose in parallel with two crucial adaptive amino acid changes in the enzyme and likely contributed to the functional adaptation of GLUD2 to the glutamate metabolism of the hominoid brain and other tissues. We suggest that rapid, selectively driven subcellular adaptation, as exemplified by GLUD2, represents a common route underlying the emergence of new gene functions.
Cytotoxic T-lymphocytes play an important role in the protection against viral infections, which they detect through the recognition of virus-derived peptides, presented in the context of MHC class I molecules at the surface of the infected cell. The transporter associated with antigen processing (TAP) plays an essential role in MHC class I–restricted antigen presentation, as TAP imports peptides into the ER, where peptide loading of MHC class I molecules takes place. In this study, the UL49.5 proteins of the varicelloviruses bovine herpesvirus 1 (BHV-1), pseudorabies virus (PRV), and equine herpesvirus 1 and 4 (EHV-1 and EHV-4) are characterized as members of a novel class of viral immune evasion proteins. These UL49.5 proteins interfere with MHC class I antigen presentation by blocking the supply of antigenic peptides through inhibition of TAP. BHV-1, PRV, and EHV-1 recombinant viruses lacking UL49.5 no longer interfere with peptide transport. Combined with the observation that the individually expressed UL49.5 proteins block TAP as well, these data indicate that UL49.5 is the viral factor that is both necessary and sufficient to abolish TAP function during productive infection by these viruses. The mechanisms through which the UL49.5 proteins of BHV-1, PRV, EHV-1, and EHV-4 block TAP exhibit surprising diversity. BHV-1 UL49.5 targets TAP for proteasomal degradation, whereas EHV-1 and EHV-4 UL49.5 interfere with the binding of ATP to TAP. In contrast, TAP stability and ATP recruitment are not affected by PRV UL49.5, although it has the capacity to arrest the peptide transporter in a translocation-incompetent state, a property shared with the BHV-1 and EHV-1 UL49.5. Taken together, these results classify the UL49.5 gene products of BHV-1, PRV, EHV-1, and EHV-4 as members of a novel family of viral immune evasion proteins, inhibiting TAP through a variety of mechanisms.
The degradation of the poly(A) tail is crucial for posttranscriptional gene regulation and for quality control of mRNA. Poly(A)-specific ribonuclease (PARN) is one of the major mammalian 3’ specific exo-ribonucleases involved in the degradation of the mRNA poly(A) tail, and it is also involved in the regulation of translation in early embryonic development. The interaction between PARN and the m7GpppG cap of mRNA plays a key role in stimulating the rate of deadenylation. Here we report the solution structures of the cap-binding domain of mouse PARN with and without the m7GpppG cap analog. The structure of the cap-binding domain adopts the RNA recognition motif (RRM) with a characteristic a-helical extension at its C-terminus, which covers the b-sheet surface (hereafter referred to as PARN RRM). In the complex structure of PARN RRM with the cap analog, the base of the N7-methyl guanosine (m7G) of the cap analog stacks with the solvent-exposed aromatic side chain of the distinctive tryptophan residue 468, located at the C-terminal end of the second b-strand. These unique structural features in PARN RRM reveal a novel cap-binding mode, which is distinct from the nucleotide recognition mode of the canonical RRM domains.
We performed a bioinformatical analysis of protein export elements (PEXEL) in the putative proteome of the malaria parasite Plasmodium falciparum. A protein family-specific conservation of physicochemical residue profiles was found for PEXEL-flanking sequence regions. We demonstrate that the family members can be clustered based on the flanking regions only and display characteristic hydrophobicity patterns. This raises the possibility that the flanking regions may contain additional information for a family-specific role of PEXEL. We further show that signal peptide cleavage results in a positional alignment of PEXEL from both proteins with, and without, a signal peptide.