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1.1 Introduction 1.1.1 Aim of project .To compare the abundance of invertebrate and weed seed food resources available to birds on orzanic and conventional farmland. The objective of the studv was to assess accurately the likely benefit of these farming systems to birds feeding on farrn'land, by sampling invertebrates and weed seeds. 1.1.2 Factors implicit to achieving the project aims Variation between farms within one system could influence' invertebrate or weed seed abundance and bias results, To minimise such effects and provide results 'representative of the farming systems as a whole, sampling was based on an extensive approach; farms were sampled in groups. The inference that either of the farming systems is beneficial to feeding birds is dependent on: (i) prior knowledge of the relevance of a particular invertebrate or seed as a food-source: evidence (ii) that this foodsource is present in sufficient abundance and (iii) that the food-source is readily accessible, The methodology described below was refined to address these criteria. 1.1.3 Methodology Sampling concentrated on cereal crops, with an additional comparison of organic grass ley fields at a limited number of sites. Sampling initially consisted of sucking invertebrates from the crop using a vacuum insect net and extraction from soil cores. To aid the interpretation of results from this sampling, it was decided that more information was required on the diet of birds. This was achieved by analysing faecal sacs for undigested fragments of invertebrates that therefore represented a dietary component. Skylark chick faecal sacs were chosen for analysis as this was the key species for the intensive ornithological studies and samples could be taken during routine fieldwork. As a result of this study, the main invertebrate sampling technique was changed to pitfall traps, since this was a superior method for assessing those invertebrates found to be important food-sources. It was also anticipated that pitfall trapping would provide more accurate estimates of invertebrate availability, with greater numbers per sample, than the previous two techniques. Studies of weed seed food resources consisted of field surveys using a quadrat to assess the presence and abundance of species, and the use of a small hand held suction machine to suck seeds from post-harvest stubble. The interpretation of the results emphasised the aspects of the ecology of species known to be food-sources that might influence their availability to birds. 1.2 Soil core and vacuum samples 1.2.1 Significantly more dipteran immature stages and Coleoptera were found in soil cores on organic grass ley fields and significantly more earthworms on organic cereal fields than conventional cereal fields. Earthworms and dipteran larvae such as tipulids are known to be important food-sources for birds that specialize in soil invertebrates. 1.2.2 Total numbers of invertebrates trapped by both methods did not differ significantly between the two farming systems. Significantly more invertebrates were trapped, however, by both methods on organic grass ley fields than either conventional or organic cereals. 1.2.3 Significantly more Staphylinidae tCol.), especially the species Tachyporus hypnorum, were found on conventional fields, The relevance of this species as a food-source is, however, doubtful. 1.2.4 The weevil Sitona lineatus and the carabid Demetrias atricapillus were found in significantly greater numbers on organic fields. The former may constitute a food-source for skylarks, which have been shown to feed on this insect under laboratory conditions. 1.3 Faecal sac analysis 1.3.1 Carabid beetles were an important component of skylark chick diet, forming 47 % of identifications. In some cases it was possible to identify the species present. 1.3.2 Coleoptera, other than carabids, from the families Elateridae, Curculionidae, Chrysomelidae and Staphylinidae were identified as food-sources. 1.3.3 Spiders and tipul ids were also important components. 1.3.4 Reservations are expressed that the technique may under-represent soft-bodied invertebrates, which are susceptible to complete digestion by skylark chicks. 1.4 Pitfall trap samples 1.4.1 Twelve key species of carabid beetles were analysed. of which five cornmon species were trapped in significantly greater numbers on organic farms. These were Pterostichus melanarius (the dominant species captured), Pterostichus madidus, Harpalus affinis, Harpalus rufipes and Nebria brevi collis. The other species analysed showed no significant variance between farming systems. 1.4.2 Williams' Index of Diversity was significantly greater for conventional fields, although caution is expressed over the reliability of this result due to the small sample size of species. 1.5 Botanical studies 1.5.1 The abundance of weed plants in quadrats was significantly greater on organic fields. 1.5.2 The abundance of weed seeds was not significantly different between farming systems. However, the relative proportions of monocotyledonous and dicotyledonous seeds in samples differed between farming systems. A larger proportion of the seeds from organic fields were dicotyledonous and from conventional fields were monocotyledonous. 1.5.3 Preliminary examination of the size of plants and the number of seeds produced suggested that those on organic fields may have been nitrogen deficient. 1.5.4 Weed species were significantly more diverse on organic fields. although diversity has less relevance to bird feeding than abundance. 1.6 Proposals for future work 1.6.1 Replication of the pitfall trapping exercise in subsequent years would substantiate the trends established from the data of one season. It would also be beneficial 10 extend the range (If habitats sampled to take into account set-aside and other crops besides cereals. 1.6.2 More comprehensive information. on the diet of farmland birds in general. could he achieved by analysing the faecal sacs of a wider variety of species. 1.6.3 Greater integration of field studies on birds with invertebrate sampling would enhance the effectiveness of the latter as an indicator of diet. Areas of farmland frequently selected as feeding sites by birds could be sampled intensively for invertebrates and compared to other areas, selected at random. This would provide useful information on the invertebrates likely to be important as food-sources and the habitats that favour them. 1.6.4 Extending the range of farms sampled would provide more accurate results. 1.6.5 More work is required to-investigate the possible link between nitrogen deficiency in plams and organic systems, and its implications for the provision of bird food-sources, particularly for weed abundance and phytophagous insects.
Baltic Sea
(1957)
This study treats 76 species, in which 58 species and 14 genera are described as new. The species are arranged in 28 families and 56 genera. The oribatid or cryptostigmatid mites are cosmopolitan group of more than 6500 species relegated to approximate 700 genera and 134 families. The body length of most oribatid species ranges 300-1200 µ. The oribatid mites are darkly coloured and covered with a rigid exoskelecton. The life cycle consists of egg, larva, protonymph, tritonymph, deutonymph and adult. These mites are best known as inhabitants of litter and upper soil strata, their small size and shunning of light caused them to receive little attention for many years. In recently studies of soil fauna, it has been shown that is an economic importance for human, i.e. many species feed on surface plant detritus, and may therefore play a major role in maintaining the fertility of soils; they could become an indicator of soil physical and chemical characters. Some species have also been shown to act as vectors of various tapewonns; they feed almost exclusively on tyroglyphid mites and attack the parasitic hymenopteran, Polynotus zosini; and several species are associated with plant, they have been reported to damage the leaf, the foot and the stem of potato, strawberry, turlip, citrus and mushroom. Systematic studies of these mites are scarcely found in Taiwan. The present paper deals with 76 species, 56 genera in 28 families, among them, 58 species and 14 genera are described as new. The author hopes that this study constitutes an example to show that the wealth of fascinating information could be gained and also hopes that this finding might be useful for elucidating the taxonomy of oribatid mites in Taiwan.
Interaction between species in a marine ecosy stem is described by expressions for food consumption and grazing mortality which are consistent with each other and with the Beverlon and Holt model of the population dynamics ofindividual species. A model of primary production is introduced in order to make possible an account of nutricnt circlliation (as examplified by phosphorus) within and nutrient flow through the system. It is demonstrated in an application to North Sea fishencs that recent changes in total yield can be described in some detail under the terms of the model as a function of fishing mortality alone. The composition of the North Sea fauna in the virgin state is discussed and also the conditions under which total yield could be increased above the 1970 level.
Techniques for collecting, handling, preparing, storing and examining small molluscan specimens
(2007)
Micromolluscs are small-sized molluscs (< 5 mm), and include the great majority of undescribed molluscan taxa. Such species require special collecting, sorting and handling techniques and different storage requirements to those routinely used for larger specimens. Similarly, the preparation of shells, opercula, radulae and animals poses some challenges for scanning electron microscopy (SEM). An overview of experiences with various techniques is presented, both positive and negative. Issues discussed include those relating to storage of dry specimens and interaction of specimens with glass, gelatine and paper products, handling techniques and storage in various fluids. Techniques for cleaning shells for SEM are described and compared, as well as those for radular extraction. The interactions of chemicals used for the dissolution of tissue with calcareous micromolluscs are described. Methods for handling and mounting small radulae for SEM are detailed and brief guides to SEM and light photography are given. An appendix listing details of frequently-used chemicals is provided.
This paper describes the effect of the "Boleslaw" mining and metallurgic complex in Bukowno near Olkusz on the vegetation of the fresh coniferous forest association Vaccinia myrtilli-Pineitum. The increase in concentration of zinc, lead and cadmium in selected plant species under the influence of industrial emission, and the dependence of this increase upon the magnitude of dust fall and site conditions, are analized. The extent of accumulation of heavy metals in plants was assumed to be an indicator of the degree of pressure exerted by the industrial complex. The degradation of fresh coniferous forest was. increasing along with an increase in this pressure. The species composition of the association, and the quantitative relations among species representing various site types underwent considerable changes. In patches extremely degraded, the plant species characteristic of poor sandy grass-lands gained predominance over forest plants.
Several mosquito-borne arboviruses belonging to the genera Alphavirus, Flavivirus, and Bunyavirus have been reported to occur in mosquitoes and to infect humans and other vertebrates in western Europe. These zoonotic viruses circulate in nature either in an Aedes-mammal, Anopheles-mammal, or Culex-bird transmission cycle. Infected humans normally do not contribute to the virus circulation. West Nile virus (Flavivirus) caused an outbreak of fever, malaise, pain in eyes and muscles, and headache and encephalitis in southern France during 1962-1965, and an outbreak of encephalitis with a high case-fatality rate in Romania during 1996. West Nile virus has been isolated from birds, horses, and mosquitoes in Portugal, France, the former Czechoslovakia, and Romania. These data, together with reports of antibodies to West Nile virus in birds, domestic mammals, and humans in several other countries, show virus activity in southern and central Europe. Sindbis virus (Alphavirus) caused outbreaks of fever, rash, and arthralgia in northern Europe during 1981-1982, 1988, and 1995. Two California group viruses (Bunyavirus), Tahyna virus and Inkoo virus, have been identified in western Europe. Tahyna virus causes fever and respiratory symptoms and sometimes also central nervous system involvement. It occurs in most countries of central and southern Europe, and is most common in central Europe. Inkoo virus has not been associated with disease in humans in western Europe although Russian studies indicated that it can cause encephalitis. Inkoo virus occurs in northern Europe, especially in the far north. Batai virus of the Bunyamwera-group (Bunyavirus) occurs in southern, central, and northern Europe, most frequently in central Europe. The antibody prevalence in humans generally is very low, indicating that the potential of this virus as a human pathogen is probably low in Europe. The Lednice virus (Bunyavirus) has been reported only from the former Czechoslovakia and Romania, and apparently is not transmitted to humans. In addition to the six mosquito-borne viruses documented in western Europe, there is serological evidence of infection with a Semliki Forest complex virus (Alphavirus) in central and southern Europe. Although mosquito-borne viruses presently are not considered to be the cause of major health problems in western Europe, the morbidity caused by Sindbis virus, and the morbidity and mortality caused by West Nile virus, merit further studies on the ecology, epidemiology, and medical importance of these viruses. The California group of viruses and a virus of the Semliki Forest complex may be the cause of unrecognized health problems in western Europe. Specific sampling of potential vectors for virus isolation, detailed characterization of virus strains, and the use of fully characterized strains for serological diagnosis will help to elucidate the present and future potential of mosquito-borne viruses as human pathogens in Europe.
(1) a. The mating behavior (including copulation) is described for the first time in the following species: Pardosa modica, P. emertoni, P. saxatilis, P. lapidicina, Lycosa helluo, .L. gulosa, Dolomedes scriptus, Phidippus clarus, P. audax, Philodromus pernix, and Coriarachne versicolor. b. The courtship only is described for the first time in Phidippus purpuratus. c. In Lycosa rabida and Pardosa milvina new data concerning the copulation, and in Schizocosa crassipes new data concerning courtship, are added to what is already available from Montgomery's work. d. In Tibellns oblongus and Xysticus triguttatus new data are added to the accounts of Gerhardt, and of Emerton, respectively. (2) a. On the basis of a large number of observations and experiments with the males of 19 species from 4 families of vagabond spiders, it is pointed out that the senses involved in courtship may vary with the species. b. There is no evidence that a sense of smell is used in sex recognition by any spiders. At least this sense plays no part in initiating courtship activity in the male. c. There is no evidence that Attid males can "recognize" the females by any sense other than sight. At any rate, it appears that the visual stimulus is the only one that suffices to incite courtship in this family. d. In one Lycosid observed, Pardosa emertoni, the courtship behavior is elicited only when the male can both see and touch the female. e. In the Pisaurid, Dolomedes scriptus, the sole stimulus for courtship is the chemoperception by contact of an ether-soluble substance normally covering the cuticle of the female. f. In the Lycosid, Pardosa milvina, the chemoperception by contact of an ether-soluble substance normally covering the cuticle of the female, together with the simultaneous perception of tactile stimuli will elicit courtship. This probably holds for P. saxatilis, Lycosa rabida, Schizocosa crassipes, and perhaps for Pardosa modica. Moreover, the sight of a moving Lycosid of about their own size may, in some cases, be sufficient for these males to start courting. g. In the Lycosids, Pardosa banksi, and probably Lycosn gulosa and L. helluo, only the simultaneous perception of both tactile and tacto-chemical stimuli suffices. Visual stimuli play no part in eliciting courtship. h. The condition in the Thomisids is in all probability similar to that in the preceding group of Lycosids. (3) a. In the case of those species in which contact chemoperception occurs it is shown that perception is not limited to the tarsi. Such stimuli can be perceived on all the segments of the legs as well as on the abdomen. From the known distribution of the slit sense organs it is probable that they are the chemoreceptors involved in courtship.
Naturschutz in Germany
(1936)
RNA interference (RNAi) is triggered by recognition of double-stranded RNA (dsRNA), and elicits the silencing of gene(s) complementary to the dsRNA sequence. RNAi is thought to have emerged as a way of safeguarding the genome against mobile genetic elements and viral infection, thus maintaining genomic integrity. dsRNA is first processed into small interfering RNAs (siRNA) by the enzyme Dicer. siRNAs are ~21 to 25 -nt long, and contain a signature 5’ phosphate group and a two nucleotide long 3’ overhang (Bernstein et al., 2001). The siRNA is then loaded into the RNA-induced si-lencing complex (RISC), of which Argonaute is the primary catalytic component (Liu et al., 2004). Energetic asymmetry of the siRNA ends allows for its directional loading into RISC (Khvorova et al., 2003; Schwarz et al., 2003). Argonaute cleaves the passen-ger strand of the siRNA, leaving the guide strand of the siRNA bound to RISC (Gregory et al., 2005; Matranga et al., 2005; Rand et al., 2005). This single-stranded guide strand siRNA bound to Argonaute is able to recognize target mRNA in a sequence-specific manner, and cleaves the mRNA. Argonaute 2 in complex with single-stranded siRNA is sufficient for mRNA recognition and cleavage, thus forming a minimal RISC (Rivas et al., 2005). miRNAs, endogenously expressed small RNA genes which typically contain mismatches and non-Watson-Crick base pairing, are processed by this general pathway, although typically modulate gene expression by translational repression as opposed to cleavage of their target mRNA. The number of Argonaute genes is highly variable between species, ranging from one in S. pombe to twenty-seven in C. elegans. Earlier crystal structures of Argonaute apoen-zymes show the architecture of Argonaute to be a multidomain protein composed of N terminal, PAZ, MID, and PIWI domains (Song et al., 2004; Yuan et al., 2005). These multi-domain proteins are present in both prokaryotic and eukaryotic organisms. The role of Argonaute proteins in prokaryotes is still unknown, but based similarity to eu-karyotic Argonautes, they may also be involved in nucleic acid-directed regulatory pathways. These proteins have served as excellent models for learning about the struc-ture and function of this family of proteins. RNAi has found a widespread application for the simple yet effective knockdown of genes of interest. The catalytic cycle of RISC requires the binding of a number of different nucleotide structures to Argonaute, and we expect Argonaute to undergo a number of conforma-tional changes during the cycle of mRNA recognition by RISC (Filipowicz, 2005; Tom-ari and Zamore, 2005). Nevertheless, it remains unclear how the multi-domain ar-rangement of Argonaute recognizes and distinguishes between single-stranded and dou-ble-stranded oligonucleotides, which correspond to the Dicer-processed siRNA product, guide strand siRNA, and the guide strand / mRNA duplex. The Argonaute protein from Aquifex aeolicus was cloned, expressed, crystallized and solved by molecular replacement. Relative to earlier Argonaute structures, a 24° reorientation of the PAZ domain in this structure opens a basic cleft between the N-terminal and PAZ domains, exposing the guide strand binding pocket of PAZ. A 5.5-ns molecular dynamics simulation of Argonaute showed a strong tendency of the PAZ and N-terminal domains to be mobile. Binding of single-stranded DNA to Argonaute was monitored by total internal reflection fluorescence spectroscopy (TIRFS). The experi-ments showed biphasic kinetics indicative of large conformational changes, and re-vealed a hotspot of binding energy corresponding to the first 9 nucleotides, the so-called “seed region” most crucial for sequence-specific target recognition. As RNAi may have evolved as a way of safeguarding the genome viral infection, it is not surprising that viruses have evolved different strategies to suppress the host RNAi response in the form of viral suppressor protein. (Hock and Meister, 2008; Lecellier and Voinnet, 2004; Rashid et al., 2007; Song et al., 2004; Vastenhouw and Plasterk, 2004). These viral suppressors are widespread, having been identified in a number of different viral families. Not surprisingly, they generally share little sequence homology with one another, although they appear to exist as oligomers built upon a ~ 100-200 amino acid protomer. Tomato aspermy virus, a member of the Cucumoviruses, encodes for protein 2B (TAV 2B, 95 a.a., ~11.3 kDa) that acts as an RNAi suppressor. Intriguingly, a similar genomic arrangement is seen in RNAi suppressors in the Nodaviruses, a family of viruses that can infect both plants and animals, such as Flock house virus b2 (FHV b2). The 2B and b2 proteins are both derived from a frameshifted ORF within the RNA polymerase gene (Chao et al., 2005). In spite of this genomic similarity, the 2B and b2 proteins share little sequence identity, and it is not well understood how the Cucumovirus 2B proteins suppress RNAi. To address how TAV 2B suppresses RNAi, the oligonucleotide-binding properties of TAV 2B were studied. TAV 2B shows a preference for double-stranded RNA oligonucleotides corresponding to siRNAs and miRNAs, and also binds to single-stranded RNA oligonucleotides. A stretch of positively charged residues between amino acids 20-30 are critical for RNA binding. Binding to RNA oligomerizes and induces a conformational change in TAV 2B into a primarily helical structure. These studies sug-gest that suppression of RNAi by TAV 2B may occur by targeting different stages of the RNAi pathway. TAV 2B falls under the category of more general RNAi suppres-sors, with potentially multiple targets for suppression.
The reggie protein family consists of two homologous members, reggie-1 and reggie-2, also termed flotillin-2 and flotillin-1, respectively, that are ubiquitously expressed and evolutionarily well conserved, suggesting an important but so far ill-defined function. In various cell types, both reggies have been found to be constitutively associated with lipid rafts by means of acylation modifications and oligomerization. Lipid rafts are glycosphingolipid- and cholesterol-rich membrane microdomains which have been implicated in several cellular processes including membrane transport and signal transduction through growth factor receptors. However, the molecular details of these processes are still poorly understood. With the observation that reggies colocalize with activated glycosylphosphatidylinositolanchored proteins (GPI-APs) and Fyn kinase in rafts, a role for these proteins in signaling events has been suggested. In agreement with that, we have previously shown that reggie-1 becomes multiply tyrosine phosphorylated by Src kinases in response to epidermal growth factor (EGF) stimulation, pointing to a function for reggie-1 in growth factor signaling. Furthermore, overexpression of reggie-1 enhances spreading on fibronectin substrate in a tyrosine-dependent manner, thus revealing a role for reggie-1 in regulation of actin cytoskeleton through growth factor receptors. Due to the similarity shared by reggie proteins at amino acid level and to their ability to form hetero-oligomeric complexes, the first aim of this study was to analyze the putative tyrosine phosphorylation of reggie-2 in growth factor stimulated cells. Similarly to reggie-1, reggie-2 was found to be multiply tyrosine phosphorylated by Src kinase and to exist in a molecular complex with Src, with the degree of co-immunoprecipitation dependent on the activity of Src. Recent studies from us have also shown that administration of EGF results in the endocytosis of reggie-1 from the plasma membrane into endosomes, which is in line with a proposed role for reggies in membrane trafficking processes. In order to characterize in detail the endocytic mechanism that mediates the uptake of reggie-1, the dependency of reggie-1 endocytosis on clathrin and dynamin was investigated by means of overexpressing a variant form of Eps15 or a dominant negative form of dynamin-2. In either case the translocation of reggie-1 into endosomes in response to EGF was not affected, and this, together with the results that reggie-1 colocalized with cholera toxin (CTX) but not with transferrin receptor (TfnR) during EGF signaling, indicates that reggie-1 is taken up by means of a dynaminindependent, raft-mediated pathway. These findings are very well in line with recent data showing the pathway of entry into cells of reggie-2 as a raft-mediated endocytic pathway. The endocytosis of reggie-2 in response to EGF was also analyzed in this study. Similarly to reggie-1, in growth factor stimulated cells reggie-2 underwent a translocation from the plasma membrane to endosomes where the two reggies were found to colocalize with each other, suggesting that epidermal growth factor signaling might trigger the endocytosis of reggie oligomers. In addition, colocalization with both the late endosomal marker LAMP3/CD63 and epidermal growth factor receptor (EGFR) was detected, again indicating a function for reggies in signal transduction through growth factor receptors. EGFR has been reported to localize in rafts but, although this association is thought to be functional during EGF stimulation, how segregation of EGFR into rafts modulates its endocytosis and signaling is still under debate. Since reggie oligomers have recently been suggested to define a raft subtype, a further aim of this study was to investigate whether the depletion of reggies by means of small interfering RNA could interfere with the signaling and the trafficking through EGFR. Knockdown of reggie-2 resulted in an altered tyrosine phosphorylation of EGFR in response to EGF, while the degree of ubiquitination was not affected. Less efficient phosphorylation of tyrosine residues, especially of those which are docking sites for Grb2 and Shc, led in turn to an impaired activation of p38 and ERK1/2 MAPKs. Depletion of reggie-2 did not affect the early trafficking of activated EGFRs, with receptors being endocytosed and delivered to late endosomes as efficiently as in control cells. This would be in line with the normal degree of ubiquitination observed for EGFR, as ubiquitin moieties have been proposed to represent sorting tags that ensure receptor endocytosis into early endosomes and its proper intracellular trafficking. On the contrary, after prolonged EGF stimulation, depletion of reggie-2 resulted in a decreased downregulation of both receptor-bound ligand and EGFR, and in their accumulation in intracellular vesicles, thus pointing to a role for reggie-2 in the degradative pathway. Taken all together, these data ndicate that the association of EGFR with reggie-microdomains is likely to be important for proper receptor trafficking and signaling.
Distribution and variation in deer (Genus Odocoileus) of the Pacific Coastal Region of North America
(1936)
A generic drug product (World Health Organization (WHO) terminology: multisource product) is usually marketed and manufactured after the expiry date of the innovator’s patent. Generic drugs are less expensive than the innovator products because generic manufacturers do not have to amortize the investment costs of research, development, marketing, and promotion. Multisource products must contain the same active pharmaceutical ingredients (APIs) as the original formulation and have to be shown to be interchangeable with the original formulation. Multisource products have to be shown bioequivalent to the innovator counterpart with respect to pharmacokinetic and pharmacodynamic properties. Multisource products are therefore identical in dose, strength, route of administration, safety, efficacy, and intended use. Bioequivalence can be demonstrated by in vitro dissolution, pharmacokinetic, pharmacodynamic or clinical studies. Since 2000, the U.S. Food and Drug Administration (FDA) allows the approval of certain multisource products solely on the basis of in vitro studies, i.e. by waiving in vivo studies in humans (“Biowaiver”), based on the Biopharmaceutics Classification Scheme (BCS). The BCS characterizes APIs by their solubility and permeability in the gastrointestinal tract (GIT). The different BCS Classes I-IV (Class I: high solubility, high permeability; Class II: low solubility, high permeability; Class III: high solubility, low permeability and Class IV: low solubility, low permeability) result from all possible combinations of high and low solubility with high and low permeability. Since the adoption of the BCS by the FDA in 1995, the BCS criteria have been under continuous development. In 2006, the WHO has released the most recent bioequivalence guidance including relaxed criteria for bioequivalence studies based on modified BCS criteria. According to this guidance, APIs belonging to the BCS classes I – and under defined conditions - II and III – are eligible for a biowaiver-based approval. The principal objective of this work was to characterize the first-line anti tuberculosis APIs, isoniazid, pyrazinamide, ethambutol dihydrochloride and rifampicin, according to their physicochemical, biopharmaceutical, pharmacokinetic and pharmacological properties and to classify them according to the BCS. Ethambutol dihydrochloride and isoniazid were classified as borderline BCS class I/III APIs. Pyrazinamide was classified as a BCS class III and rifampicin as a BCS class II API. Based on the BCS classification and the additional criteria defined in the WHO bioequivalence guidance, the possibility of biowaiver-based approval for immediate release (immediate release) solid oral dosage forms containing the first-line antituberculosis drugs was evaluated. A biowaiver-based approval with defined constraints was recommended for immediate release solid oral dosage forms containing isoniazid (interaction with reducing sugars), pyrazinamide and ethambutol dihydrochloride (relative narrow therapeutic index). Rifampicin was classified as a BCS class II API, and it was concluded that rifampicin containing solid oral immediate release drug products as well as Scale-Up and Post-Approval Changes (SUPAC) changes should not be approved by a biowaiver on the following basis: (i) its solubility and dissolution are highly variable due to polymorphism and instability, (ii) concomitant intake of food and antacids reduces its absorption and bioavailability, (iii) no in vitro predictive dissolution test has been found which correlates to in vivo absorption and (iv) several publications reporting cases of non-bioequivalent and bioinequivalent rifampicin products have been located in the literature. Thus, it is recommended that bioequivalence of rifampicin containing solid oral immediate release drug products should be established by in vivo pharmacokinetic studies in humans. This risk-benefit benefit assessment of a biowaiver-based approval was presented as a poster at the American Association of Pharmaceutical Scientists (AAPS) 2005 and subsequently published as “Biowaiver Monographs” in the Journal of Pharmaceutical Sciences. Based on the assessment of the dissolution properties of the antituberculosis drugs for a biowaiver approval, quality control dissolution methodologies for the International Pharmacopoeia (Pharm. Int.) were developed, presented at the WHO expert meeting and adopted in the Pharm. Int. (http://www.who.int/medicines/publications/pharmprep/OMS_TRS_948.pdf). Additionally, preliminary biowaiver recommendations were also developed for four firstline antimalarial drugs listed on the WHO Essential Medicines List (EML): Quinine, as both the hydrochloride and sulphate, and proguanil hydrochloride were classified as borderline BCS class I/III APIs. Since quinine is a narrow therapeutic index drug and many cases of non-bioequivalence have been reported in the literature, a biowaiverbased approval was not recommended. For solid oral immediate release dosage forms containing proguanil a biowaiver-based approval was recommended under the condition that they dissolve very rapidly. Primaquine phosphate was classified as a BCS class I API. Therefore, a biowaiver-based approval was recommended for immediate release solid oral dosage forms containing primaquine phosphate. Mefloquine hydrochloride was classified as a basic, BCS class IV/II API, making it ineligible for the biowaiver. Additionally, reports of non-bioequivalence and a narrow therapeutic index were found in the scientific literature. Consequently, bioequivalence of solid oral immediate release dosage forms containing mefloquine hydrochloride should be established by in vivo pharmacokinetic studies. The results for quinine hydrochloride and sulphate, proguanil hydrochloride, primaquine diphosphate and mefloquine hydrochloride were presented as a poster at the Pharmaceutical Sciences World Congress (PSWC) 2007 and published as a WHO Collaborating Center Report in June 2006. The aim of this project was to collect, evaluate, generate and publish relevant information for a biowaiver-based approval of essential medicines in order to provide a summary to local regulatory authorities. This information complements the selected list of essential medicines by providing information about the biopharmaceutical properties and pharmaceutical quality of solid oral immediate release dosage forms containing these APIs. The aim of the biowaiver project, inspired by the WHO and brought in life by the International Pharmaceutical Federation (FIP), is to enable access to essential medicines in standardized quality at an affordable price. In this work, a significant contribution to this aim in the form of four biowaiver monographs for the antituberculosis drugs and several reports on the antimalarials has been achieved.
1. In investigating a spontaneous epidemic disease of rabbits, a micro-organism was isolated in pure cultures which reproduced the characteristic lesions of the natural disease.
2. The bacteriological characters of this bacillus are described and the impossibility of identifying it with previously recorded organisms justifies its being considered a new species. The name Bacterium monocytogenes is proposed.
3. Animal passage raised "virulence" when the doses were well chosen, and increased virulence accentuated the production of necrotic lesions. Overwhelming doses of culture resulted in lowering of "virulence" by animal passage.
4. Bacterium monocytogenes, in doses less than the M.L.D., produced in the circulating blood of rabbits an extreme monocytosis. The responses of the other white cells. were either transient or inconstant.
5. Repeated doses of the organism became progressively less effective as stimuli to large mononuclear production.
6. The cell content of the thoracic duct did not reflect the high degree of monocytosis in the circulating blood.
7. On intrapleural injection of peptone broth and B. coli, the cells of the resultant exudate were primarily polymorphonuclears, even though the circulating blood showed a high monocytosis. With intrapleural injection of B. monocytogenes, when the blood stream was rich in large mononuclears, a pleural exudate containing 30 per cent of these cells was obtained.
8. Phagocytosis experiments in vitro showed that the large mononuclears, while they phagocyted B. coli indifferently, took up B. monocytogenes with an avidity in all respects equal to that of the polymorphonuclear neutrophiles.
Aside from material collected and annotated during my trip to Ecuador in April and May 1973, mentioned in the frrst part of the present paper (1975), the author has been able to study Aphyllophorales and agarics collected by Dumont and others, deposited at The Botanical Garden in New York. The results are presented in the following pages. A few species from limitrophous regions are added. The first article in this series was published in Beiheft 51 zur Nova Hedwigia, pp. 239-246, 1975.
The study of rich material of Pterophoridae from Siberia and the Russian Far East revealed 96 species to inhabit these regions. 24 of them are reported for the first time from Asian Russia and 11 species and 2 genera (Sibiretta gen. nov. and Septuaginta gen. nov.) are described as new. Furthermore the genus Snellenia gen. nov. is described and isolated from the genus Stenoptilia, and previously unknown females are described for three species.
The morphology of the skeletal portions of the sting apparatus is described and compared in 63 genera of myrmicine ants in order to evaluate its taxonomic potential in this difficult subfamily. The survey covers about half of the myrmicine genera, and an but 3 small tribes (Ochetomyrmecini, Melissotarsini, Stegomyrmicini). Interspecific variation in the apparatus is described in a third of the genera examined. In addition, the sting apparatus of the primitive ponerine ant, Amblyopone pallipes is described for comparison with the primitive myrmicines; and the sting associated glands (poison gland, Dufour's gland) are illustrated for single species of Amblyopone, Basiceros, Monomorium, Aphaenogaster, Crematogasier, and Zacryptocerus.
The growth of blood vessels is crucial for organ growth in the embryo and repair of wounded tissues in the adult. An imbalance in this process contributes to numerous malignant, inflammatory, ischemic, infectious and immune disorders (Ferrara et al., 2003). Postnatal neovascularization occurs through the recruitment of progenitor cells and angiogenesis. Integrins are heterodimeric cell surface molecules and are the main receptors for extracellular matrix proteins. Regulation of integrin activation is crucial during embryonic development and during adult life. Dysregulation of integrin activity leads to severe diseases. In this study, we have demonstrated that Rap1, a small GTPase regulating integrin activity, and its GEF Epac1 are expressed in both EPC and endothelial cells. Moreover, the pharmacological activator of Epac activates the small GTPase Rap1 in progenitor cells. In parallel the angiogenic growth factors VEGF and bFGF activate Rap1 in endothelial cells. In addition, the regulation of Rap1 activity in EPC and in endothelial cells plays an important role in the regulation of migration and adhesion to matrix proteins, by regulating the activity of different integrins, a mechanism known as integrin inside‐out signaling. Furthermore, regulation of Rap1 activity affects probably indirectly through outside‐in signaling of integrins the activity of several and crucial proteins such PKB/Akt and focal adhesion kinase in endothelial cells. In line with these results, we have demonstrated that Rap1 activity affect angiogenesis, homing of EPC to ischemic tissues and thereby postnatal neovascularization. The understanding how Rap1 regulates integrin activity in endothelial cells is still not completely clear, for example we have demonstrated that the known effectors of Rap1 mediating the increase of integrin activity in T and B cells, such as RAPL and RIAM are, respectively, either not increasing integrin activity or not expressed in endothelial cells. We aim to find the effector of Rap1 promoting integrin activity in endothelial cells and how RAPL regulates integrin functions and angiogenesis. Moreover data from us and others using genetic models and generation of Rap1a or Rap1b deficient mice or deficient for Rap1a and Rap1b led to embryonic lethality suggesting that Rap1 is a key node protein during embryonic development. The development of conditionnal Rap1a/b endothelial/pericytes restricted deficient mice will help us to decipher more precisely the role of Rap1 during vascular development and angiogenesis.
The Indian Hill Mynah (Gracula religiosa) was studied in the field in Assam in north-east India. The aims of the study were two-fold: (i) to understand better this bird's exceptional ability in captivity to imitate human speech; and (ii) to provide background understanding to studies of the importance of early auditory experience and of vocal imitation in the development of normal song patterns in birds. First is given a brief description of the distribution, general behaviour, and breeding biology of this arboreal, sexually isomorphic, semi-gregarious species. The remainder of the monograph deals with vocalizations; these were either tape-recorded in the field, or transcribed directly using a written notation developed for the purpose. Any wild adult Mynah of either sex possesses four categories of vocalizations: (i) 'Chip-call'; a loud piercing squeak made in contexts which include alarm. (ii) 'Um-sound'; a soft grunt, acting in close range social contexts, and (like chip-calls) common to all individuals. (iii) 'Whisper-whistles': several soft sounds of types unique to the individual. (iv) 'Calls': several loud noises, of extremely varied patterns. The bulk of the monograph deals with 'calls', as defined thus. Calls were compared quantitatively with one another by a method developed which measured the degree of overlap of one sonogram with a tracing of a second sonogram. Both by this method and by ear, calls were divided into discrete types, without intermediates. Birds of either sex have a repertoire of usually between five and twelve such call types, some of which are produced much more commonly than others. Repertoires tend to be larger in birds which call more frequently, or which have mates with large repertoires. The repertoire of a given bird stays largely constant from year to year in size. composition, and proportions. No bird shares any of its call types with its mate, but it shares several of them with near neighbours of the same sex. There is a progressive change of dialect with distance, such that birds nesting more than about 14 km apart have no call types in common. No general characteristics of call structure could be found which were indicative of the sex of the caller, but in a known locality the call type made immediately reveals the sex of the bird producing it. Call types are learnt by selective imitation of neighbouring individuals during a young bird's first several months. A call type common in the repertoire of one bird tends also to be common in the repertoire of a neighbour, except at the edge of the limited range of that call type. Which particular call type a calling bird selects from among those in its repertoire is discussed. Few call types could be related to non-auditory contexts. A bird is likely to repeat the call type last made, and also tends to standardize the order in which it produces its different call types; this standard order tends to be the same as that of its neighbours. A birdtends also to reply at once and to standardize the call type it makes in immediate reply to a particular call type of its mate; again, neighbouring pairs of birds tend to use the same standardized call and reply types. The length of the interval between a particular call and its reply tends to be constant in a given pair of birds, and approximately the same in neighbouring pairs. These are all further aspects of extensive but selective vocal imitation by Mynahs of adult birds; other species are not imitated. Information on calling when in contact with other pairs came mainly from playback experiments, when single calls were presented to nesting pairs of Mynahs. Response strength was measured by the incidence of flight, number of subsequent vocalizations, latency of response, and proportion of playbacks ignored. When presented with playbacks of calls of familiar types (of neighbours) and of unknown types (of strangers), birds responded more strongly to the familiar than to the unknown call types. They did, however, respond somewhat to the unknown call types, which were of patterns never previously heard by them, presumably recognizing these as being Mynah calls by their sound quality. Mynahs responded as strongly to playbacks of neighbours' calls which were not in their own repertoire as to playbacks of neighbours' calls which were. A bird tends to match at once the call last heard (either from a tape recorder or from a wild neighbour), itself producing the same call type at once, if it possesses it in its own repertoire. That call type, and others associated with it, also occurs more frequently thereafter. Thus calls heard affect calls made, and vice-versa since other individuals nearby behave similarly. A change of nearest neighbours in successive years was shown to affect one pair's repertoire proportions. Further playback experiments showed that Mynahs were able to distinguish between a single call made by their neighbours and a single call of the same call type made by their mates. Small but consistent differences were found in the sonograms of such calls of the same type made by different birds. The structure of a single call type may change gradually with distance. The development of vocalizations with age is briefly described. In the final discussion sections, the ways in which, and the extent to which, Mynahs are able to determine the species, home locality, sex and individual identity of other Mynahs are outlined. There follow consideration, and comparison with other species: (i) of various aspects of repertoires; (ii) of the distribution of call types among different individuals; (iii) of the dynamic aspects of calling, and a scheme is proposed which accounts for the selection for utterance of a particular call type from the repertoire; and (iv) of the organization and coordination of calling. The lack of imitation of other species in the wild is discussed, and contrasted with the several ways in which wild Mynahs imitate one another in various aspects of their calling.
Classical mutagenesis
(1992)
Classical genetic analyses require the presence of at least two different alleles per locus. Until the mid 1920's for the different alleles the investigators had to rely on spontaneous mutations. Since then mutagenic agents (mutagens) became available and these discoveries greatly enhanced the power of genetic analyses. Mutation is defined here as a heritable chemical alteration within the gene or the mutation process bringing about the change. Mutant is the individual (cell) containing the mutation. Point mutations are assumed to be free of loss, gain or rearrangement within the nucleotide sequence. Fonvard mutations are changes from the wild type allele (the allele predominant in wild populations) to a new allele, and the reverse process is backmutation. The frequency o/mutation per locus per generation (mutation rate) must be distinguished from mutant frequency, indicating simply the number of mutants in a population. Mutation in the broad sense involves also hereditary changes in chromosome number (polyploidy and aneuploidy) and chromosome structure, visible through the light microscope. The latter types are frequently called chromosomal aberrations. Arabidopsis, without further qualifications, in this context, will refer to Arabidopsis thaliana (L.) Heynh. in its diploid form (2n = 10). This species has three genomes, the nuclear, plastidic and the mitochondrial. Its nuclear genome (n = 5) is the smallest among higher plants (Leutweiler et al., 1984), containing about 0.7 - 1 x 108 bp, and redundancy is very low (Meyerowitz and Pruitt, 1985). The plastid genome is about the same size as that of the mcYority of higher plants, ca. 150 kb. The size of the mitochondrial genome is ca. 400 kb. Arabidopsis is an excellent tool for genetics and its critical features and known mutants have been reviewed (R&Iei , 1970, 1975a,b; Kranz, 1978; Meyerowitz and Pruitt, 1984; Meyerowitz, 1987, 1989; Estelle and Somerville, 1986; Bowman et al., 1988).
Results from a comparative anatomical study of the mesosomal skeleton of Chalcidoidea are presented. External and internal features are described and illustrated for 39 chalcidoid taxa, representing 16 families and 29 subfamilies. This is the most comprehensive morphological study ever conducted for the superfamily. The mesosoma was dissected, macerated and investigated using scanning electron microscopy. The mesothorax and metathorax contributed most of the phylogenetically relevant information. The metafurca is highly variable within Chalcidoidea but seems to be relatively constant at the subfamily level. One hundred and fifty-four morphological characters were scored and analysed cladistically. Outgroup species were chosen from six apocritan superfamilies: Stephanoidea, Ceraphronoidea, Cynipoidea, Platygastroidea, Proctotrupoidea and Mymarommatoidea. Some previously suggested chalcidoid relationships were retrieved: (1) Pteromalidae: Pteromalinae + Miscogasterinae + Panstenoninae; (2) Perilampidae + Eucharitidae; (3) Chalcididae + Leucospidae + Eurytomidae; (4) Eulophidae: Eulophinae + Tetrastichinae + Entedoninae; and (5) Eupelmidae + Encyrtidae, Mymarommatoidea renders Chalcidoidea paraphyletic in our analyses; however, the taxon sample is too restricted to provide a robust hypothesis. Three previously unreported putative autapomorphies of Chalcidoidea were revealed: (1) presence of an exposed, triangular or diamond-shaped prosternum; (2) presence of a percurrent mesopleural sulcus anteriorly terminating in the acropleuron; and (3) presence of paired metapectal plates lateral to the metafurca.
Lepidoptera phylogeny and systematics : the state of inventorying moth and butterfly diversity
(2007)
The currently recognized robust support for the monophyly of the Lepidoptera (and the superorder Amphiesmenoptera comprising Lepidoptera + Trichoptera) is outlined, and the phylogeny of the principal lineages within the order is reviewed succinctly. The state of the taxonomic inventory of Lepidoptera is discussed separately for ‘micro-moths’, ‘macro-moths’ and butterflies, three assemblages on which work has followed historically somewhat different paths. While currently there are about 160,000 described species of Lepidoptera, the total number of extant species is estimated to be around half a million. On average, just over one thousand new species of Lepidoptera have been described annually in recent years. Allowing for the new synonyms simultaneously established, the net increase in species numbers still exceeds 800/year. Most of the additions are foreseeable in the micro-moth grade, but even for butterflies ca 100 species are added annually. Examples of particularly interesting new high-rank taxa that have been described (or whose significance has become realized) since the middle of the 20th century include the non-glossatan lineages represented by Agathiphaga and Heterobathmia and the heteroneuran families Andesianidae, Palaephatidae, Hedylidae and Micronoctuidae. Some thoughts on how present and future systematic lepidopterology might be prioritised are presented.
The morphology of green and blue feathers of the Rose-faced Lovebird (Agapomis roseicollis) is described from light-, fluorescence-, and electron microscopical findings and discussed in relation to earlier works. The description is intended to provide a basis for future comparative studies. Special attention is given to the colour-producing elements (pigments and the short-wave reflecting spongy structure ('Blaustruktur', 'cloudy medium') of specialized medullary barb cells (spongy cells, box cells)), and the findings are correlated with macro- and microspectrophotometric measurements. Green barbs differ from those of blue ba rbs in having their cortex yellow pigmented, but are further distinguished by their spongy structure which is denser (wider keratin rods and correspondingly narrower air-filled channels) than that of blue barbs. This difference corresponds to the wave-length of maximum reflectance being shifted c. 30 nm towards longer wave-lengths compared to that of blue barbs. Thus green barbs are not the same as blue barbs only with a yellow pigmented instead of an unpigmented cortex, as usually stated. Dark green hack feathers reflect approximately half as much light throughout the visible spectrum as do green belly feathers. This difference is due to variations in yellow and black pigmentation of the barbules. These variations are described quantitatively and the importance of barbules for the resulting feather colour is stressed. Variation in size and shape of barbs and barbules are discussed, principally in relation to their optical efIects and the presumed functions of the colours. The colour produced by the spongy structure cannot be explained by Tyndall (Rayleigh) scattering as is usually done. This follows from the shapes of the barb reflectance spectra which are not in agreement with the Rayleigh equation (scattering inversely proportional to lambda4). A new model for colour production is forwarded. It is based on a model of the spongy structure in which this is considered to consist of short hollow keratin cylinders (diameter 0.3-0.35 ft) with air-filled cores. Backscattering from these cylinders is considered responsible for colour production and good agreement is obtained between values of lambda max calculated from the model and those measured spectrophotometrically. The backscattering from the Individual cylinders can be regarded as an Interference phenomenon. The colour of the spongy structure thus is an interference colour. That it appears diffuse and not iridescent, as is generally the case for interference colours in feathers, is due to the presence of many hollow cylinders oriented in all directions in the spongy structure.
5-LO is the key enzyme in the biosynthesis of proinflammatory leukotrienes. It catalyses the conversion of arachidonic acid to the hydroperoxy intermediate 5(S)-hydroperoxy-6- trans-8,11,14-cis-eicosatetraenoic acid (5-HpETE). In a second step 5-LO catalyses a dehydration reaction forming the unstable epoxide intermediate 5(S)-trans-5,6-oxido-7,9- trans-11,14-cis-eicosatetraenoic acid (leukotriene A4 , LTA4). The 5-LO gene is subjected to versatile regulation mechanisms. Apart from regulation by DNA-methylation and histone acetylation / deacetylation 5-LO gene expression can be regulated by the differentiation inducers calcitriol (1,25-dihydroxyvitamin D3) and transforming growth factor beta (TGFβ) 5-LO gene expression. In the myeloid cell lines Mono Mac 6 (MM6) and HL-60, differentiation with both agents caused a prominent upregulation of 5-LO mRNA level, of 5-LO protein expression and of 5-LO activity. Treatment with calcitriol alone already has an impact on 5-LO gene expression which is additionally potentiated by TGFβ treatment. Previous nuclear run-off analysis and reporter gene analysis could not associate the 5-LO promoter with the induction of 5-LO mRNA expression mediated by calcitriol and TGFβ. Inclusion of the 5-LO coding sequence (cds) and inclusion of the 5-LO cds plus the last four introns of the gene (J to M) in the 5-LO promoter construct pN10 led to an enhanced reporter gene activity. The inductions were dependent on vitamin D receptor (VDR) and retinoid x receptor (RXR) cotransfection. Therefore the work was concentrated on identifying elements outside the 5-LO promoter region which contribute to the calcitriol / TGFβ effect on 5-LO mRNA expression. Insertion of the LTA4 hydrolase coding sequence – a coding sequence of similar size - instead of the 5-LO cds led to a loss of the calcitriol / TGFβ effect (pN10LTA4Hcds 1-fold induction). Therewith, it was proven that the presence of the 5-LO cds is crucial for the upregulating effect of calcitriol / TGFβ on 5-LO mRNA level. Cloning of the SV40 promoter instead of pN10 upstream of the 5-LO cds still showed inducibility by treatment with the inducers which argues for a promoter unspecific effect. Insertion of the 5-LO cds in a promoterless basic vector (pGL3cds) displayed same inductions by calcitriol / TGFβ treatment as the 5-LO promoter 5-LO cds construct (pN10cds). Thus, the effect of the inducers is not dependent on the 5-LO promoter under the in vitro conditions of the reporter gene assay. Hence, further cloning was done with promoterless constructs. Through 5-LO cds deletion constructs a positive regulating region in exon 10 to 14 was discovered. To adapt the natural gene context the last four introns (J-M) of the 5-LO gene were inserted in a promoterless construct containing exon 10 to 14 (pGL3cdsΔABInJM). 5end deletion constructs of it revealed putative vitamin D responsive elements (VDREs) in exon 12 and intron M. Mutation of the putative VDREs led to a reduced calcitriol effect –more prominent when the putative VDRE in intron M was mutated (reduction of 40%). Moreover another putative VDRE in exon 10 with an adjacent SMAD binding element (SBE) was detected. SMAD proteins are effector proteins of TGFβ signalling. Gelshift experiments demonstrated in vitro binding of the VDR-RXR heterodimer to those three putative VDREs. By chromatin immunoprecipitation (ChIP) assay in vivo binding of VDR and RXR was shown to the VDRE in the region of exon 10, exon 12 and intron M. 8h and 24h incubation with calcitriol / TGFβ resulted in enhanced expression of VDR in each of the examined regions. The VDR is able to bind to the VDRE without its ligand, whereas this goes along with corepressor recruitment and thus the VDR has a repressive effect on transcription. Histone H4 acetylation was increased when MM6 cells were treated for 8h or 24h with calcitriol or the combination of calcitriol / TGFβ. This finding implies that at that point of time corepressors associated with the VDR are replaced by coactivators. It seems convincing that 5-LO transcription is mainly promoted by calcitriol alone which leads to a more accessible chromatin structure. Previous data indicated that calcitriol and TGFβ upregulate 5-LO RNA maturation and 5- LO transcript elongation. Thus several elongation markers were investigated by ChIP analysis: Histone H3 lysine 36 (H3K36) trimethylation and H4K20 monomethylation were detected in the analysed regions in exon 10, exon 12 and intron M. In region exon 10 the H3K36 trimethylation status was enhanced after 24h calcitriol or calcitriol / TGFβ treatment. An increased H4K20 monomethylation status in all regions was observed when MM6 cells were treated for 24h with calcitriol / TGFβ. 24h treatment with both agents also enhanced the recruitment of the elongation form of RNA polymerase II, which is phosphorylated at serine 2 of the carboxyterminal domain, to the investigated regions. These findings prove the positive regulating role for calcitriol and TGFβ on 5-LO transcript elongation. A putative mechanism of the effect of calcitriol and TGFβ on 5-LO RNA maturation might be the elevated phosphorylation of serine 2 of the RNA Polymerase II which is known to be followed by recruiting polyadenylating factors.
The factors responsible for determining the host-plants and feeding sites of aphids, and the various probing activities (the role of the labium, stylet insertion, surface saliva deposition, the behaviour of the aphid, virus transmission) are examined. There is a brief review of stylet structure and movement and the possible sensory nature of these organs, followed by a detailed review of the characteristics of aphid stylet paths in plant tissues. The penetration of epidermis and vascular tissues is treated separately while that within the intermediate tissues is covered in relation to leaves and stems, roots, trees, galls and excised tissue as well as in separate sections on Aphis fabae Scopoli and Myzus persicae (Sulzer). Stylet destinations and behaviour in the sieve tubes are discussed together with general features such as rate and depth of penetration, guidance to the feeding site, effects of tissue hardness and stylet withdrawal. The ingestion rate of plant sap is reviewed and its constitution and importance examined together with the significance of artificial diets. The salivary secretions including sheaths and tracks, their functions and their role in the transference of material between aphid and host are dealt with. The nature of the physical and internal damage resulting from aphid feeding is briefly covered, and also some plant-insect interrelations. The aphid species whose stylets have been examined in plant tissue are listed.
The objects of this work were to reinvestigate and extend the results announced in a brief note published in 1925 (Murray and Huxley, 1925a). In this paper it was concluded that isolated fragments of the limb buds of the fourday chick are able to self-differentiate when Iiving as grafts on the chorio-allantoic membrane of older chicks; that the bud of the four-day chick is a mosaic; it was hinted that each of the morphological regions of the limb (femur, tibia-fibula, etc.) is represented by a Single piece of the mosaic; that no regeneration or regulation occurs in fragments of the bud, except that it was concluded that if a grafted fragment contains only part of a piece of the mosaic, that part could so regulate its future development as to form the complete morphological region of which it was originally a part, so that a fragment of the bud which contains part only of the region Which would normally form femur will, when growing as a graft, form a complete femur. It will be seen that the results of the present work uphold and confirm the tentative conclusions previously advanced, except in regard to the last point (regulation). A considerable amonnt of further information has also been obtained bearing on tile factors concerned in the development of the form of bones and joints.
The higher classification of the Nocluoidea (Oenosandridae, Doidae, Notodontidae, Strepsimanidae, Nolidae, lymanlriidae, Arctiidae, Erebidae, Micronoctuidae, and Noctuidae) is reviewed from the perspective of the classification proposed by KITCHING and RAWLINS (1998). Several taxa are reinstated, described as new, synonymised, or redescribed. Some characters that have been inadequately described, poorly understood, or misinterpreted, are redescribed and discussed. One family, two subfamilies, four tribes, and three subtribes are proposed as new. Available family-group names of Noctuoidea are listed In an appendix.
The taxonomy, diversity, and distribution of the aquatic insect order Trichoptera, caddisflies, are reviewed. The order is among the most important and diverse of all aquatic taxa. Larvae are vital participants in aquatic food webs and their presence and relative abundance are used in the biological assessment and monitoring of water quality. The species described by Linnaeus are listed. The morphology of all life history stages (adults, larvae, and pupae) is diagnosed and major features of the anatomy are illustrated. Major components of life history and biology are summarized. A discussion of phylogenetic studies within the order is presented, including higher classification of the suborders and superfamilies, based on recent literature. Synopses of each of 45 families are presented, including the taxonomic history of the family, a list of all known genera in each family, their general distribution and relative species diversity, and a short overview of family-level biological features. The order contains 600 genera, and approximately 13,000 species.
A multi-part theorem is presented concerning the morphogenesis of high-symmetry structures made of three-dimensional morphological units (MU's) free to move on the surface of a sphere. All parts of each MU interact non-specifically with the remainder of the structure, via an isotropic function of distance. Summing all interactions gives a net figure of merit, X, that depends upon MU positions and orientations. The structure evolves via gradient dynamics, each MU moving down the local gradient of I. The analysis is reresented with generality in Fourier space, which eases the expression of symmetry. Structures near symmetry, but far from a local minimum of I, are analyzed. For each, a symmetrical configuration can be found, for which X is an extremum with respect to symmetry-breaking perturbations. Under gradient dynamics, a quadratic measure of such deviations from symmetry decreases monotonically, anywhere in the large basin of attraction of a local minimum. Thus: high symmetry is an attractor. Application is made to icosahedral virus capsids. The Symmetrization Theorem shows that a stable capsid, maintained by non-specific interactions among its capsomeres, could arise generically in a "bottom-up" process. For animated evolutions that selfassemble into high symmetry, visit http://www.albany.edu/~cmarzec/
Comparing the modern level in the biology of gastrointestinal stem cells with that achieved in the hemopoietic stem cell studies, we can say, using Till's expression (1982), that at present the "morphological phase" in the investigations of the former is continuing. Still urgent is the problem of morphological verification of presumable stem cells in colonic crypts and gastric glands. Also important is to clarify the ways of renewal of the well-differentiated but low proliferating activity endocrine cells, the chief cells of the fundic glands, and the cells of Brunner's glands. Further studies of interaction between epithelial and stromal cells are needed. The knowledge of relationships between stem cells and their differentiated "neighbors" in the niches, as well as of peculiarities of contacts between epithelial cells proper and of the cells with the basement membrane is of major importance. It is also necessary to clarify the mechanisms of the stem cells "anchoring" as well as of the disturbances of this important property during carcinogenesis. Briefly summarized below are the most essential, in our opinion, directions of the study of stem cells; some of these have already been started, whereas others can only be predicted. 1. The isolation from normal tissues of the fractions of intact cells enriched with the stem cells, with their subsequent culture. 2. The clarification of the factors governing the regulation of renewal of stem cells: specific stimulators and inhibitors of proliferation; and characterization of the receptor apparatus of stem cells, particularly for the enteropancreatic hormones. 3. The antigenic characteristic of stem cells. 4. The study of molecular peculiarities of DNA replication of clonogenic cells. 5. The molecular aspects of commitment and differentiation of stem cells. 6. The quantitative and qualitative characteristics of stem cells in the process of carcinogenesis. 7. The qualitative evaluation of the dynamics of formation and disappearance of carcinogenic DNA adducts in stem cells. 8. The clarification of interspecies features of stem cells as well as of their morphogenetic potentialities in onto- and phylogenesis. 9. The characterization of metaplastic changes in stem cells.
The present paper is a continuation of "The Birds of the Galapagos Islands, with Observations all the Birds of Clipperton and Cocos Islands (Columbiformes to Pelecaniformes)". The collection of land bird skins brought back by the Expedition numbers 5,916, exclusive of the Galapagos Dove. The writer lacks the time to study this large number of specimens and therefore deems it advisable to publish his field notes without further delay. In addition to the skins, considerable collections of eggs, nests, and birds and stomachs in alcohol were macle. These also await investigation. The land birds of Cocos Island, Costa Rica, and of the Galapagos Islands are treated in the present connection, with the exception of the Galapagos Dove already considered in the earlier paper. The sequence and nomenclature of species in both papers is that of Sharpe's "Hand-list of the Genera and Species of Birds." As the species of the genera Geospiza and Camarhynchus demand a thorough revision with all available material at hand, the writer uses provisionally, with a few changes, the specific names as defined by Messrs. Rothschild and Hartert and Messrs. Snodgrass and Heller. Wherever the writer fails to recognize a species admitted by these authors, the rejected name is placed in a. selected synonymy. The localities listed for each species also include those mentioned by Messrs. Salvin, Ridgway, Rothschild and Hartert, and Snodgrass and Heller. For a full, description of the botanical regions or zones (dry or arid, moist or humid, and grassy, in order from seashore to mountain top) mentioned in this paper, the reader should refer to Mr. Alban Stewart's paper "A Botanical Survey of the Galapagos Islands."
This paper is a general review of the problem of clutch-size in birds. It grew out of a search through the literature to see to what extent clutch-size trends found in the Robin, Erithaau8 rebecula, might apply generally. Part I. describes those types of clutch-size variation found within any species, Part II. provides a general discussion of the factors involved. In Part IlI, which follows separately later, some of the differences between different species of birds will be considered. Examples are taken mainly from European birds, hence this review is in some ways supplementary to that on African birds by Moreau (1944), to which the present study owes a considerable debt.
The respiratory chain is composed of protein complexes residing in the inner mitochondrial membrane of eukaryotes or in the cytoplasmic membrane of prokaryotes. This cellular energy converter transforms a redox potential stored in low potential substrates into an electrochemical potential across the respective membrane. Typical respiratory chains contain the complexes I, II, III and IV named according to their sequence in the respiratory chain reaction. Electrons of low potential substrates enter at complex I or II and are passed via complex III to complex IV where they are transferred to oxygen. The transport of electrons between the complexes is mediated by small electron shuttles like quinol or cytochrome c. Two different models describe their exchange either by (1) random collision of freely diffusible electron shuttles and membrane protein complexes or (2) arrangement of the complexes in supercomplexes enabling direct channeling of electron shuttles. In the Gram positive bacterium Corynebacterium glutamicum, the complex III to complex IV electron shuttle cytochrome c is not diffusible but a covalently bound part of the diheme cytochrome subunit QcrC of complex III. Therefore, the complexes III and IV have to form a supercomplex for electron transduction. The aim of this thesis was to purify and characterise this obligatory supercomplex III/IV of C. glutamicum. To gain sufficient biomass of C. glutamicum as starting material for purification, a phosphate buffered minimal medium was developed that enabled yield of total 120 g wet cell mass (38 g dry mass) in 12 L (6×2 L) shaking cultures. The determined conversion factor of glucose into biomass was 0.46 g/g indicating an intact respiratory chain. The yield was increased by bioreactor cultivation to ~690 g wet cell mass (~220 g dry mass) in ~10 L culture volume. A previously described homologous expression system was applied that produces the complex IV subunit CtaD with a fused Strep-tag II to facilitate purification. Affinity purifications using the Strep-tag II affinity to Strep-Tactin resin yielded a mixture of complexes and supercomplexes. Two supercomplex III/IV versions named supercomplex A and B and free complex IV were identified in this mixture by size exclusion chromatography, redox difference spectroscopy and two dimensional polyacrylamide gel electrophoresis including blue native polyacrylamide electrophoresis. The here presented downscaled blue native polyacrylamide electrophoresis method with analysis times of ~1 h enabled efficient screening of factors influencing the stability of supercomplex III/IV. The screening resulted that the integrity of supercomplex III/IV is preserved by using neutral detergents at minimal detergent to protein ratios for solubilisation and low detergent concentrations for purification and storage slightly above the required critical micellar concentration. Furthermore, pH <=7.5 is required for stability of supercomplex III/IV. Large biomass yields enabled upscaling of supercomplex III/IV affinity purification. Application of the identified stability conditions resulted in affinity purified samples free of supercomplex B. The major component supercomplex A was efficiently separated from residual free complex IV by preparative size exclusion chromatography. Concentration of purified supercomplex A by ultracentrifugation resulted in integrity of the supercomplex for several days at 4 °C. Purified supercomplex A contains ten different previously described subunits. The heme content of supercomplex A relative to the protein mass is heme A: 6.0 μmol/g, heme B: 6.5 μmol/g, and heme C: 5.8 μmol/g determined by redox difference spectroscopy and biochemical protein quantification. This indicates an equimolar ratio of complex III and complex IV in supercomplex A. Supercomplex A has quinol oxidase activity that is inhibited by stigmatellin or sodium azide. The turnover number of transferred electrons per complex III monomer is 148 s−1 at 25° C. The homogeneity and stability of the prepared supercomplex A enabled the growth of threedimensional crystals of up to 0.1 mm in length. Their composition of supercomplex A was verified by redox difference spectroscopy of intact crystals and blue native polyacrylamide electrophoresis of dissolved crystals. The crystals diffracted X-rays corresponding to a resolution of ~10 Å. Electron microscopy of negative stained samples revealed the uniform shape of purified supercomplex A particles with dimensions of 22 × 9 nm in the view plane. Combined heme quantification, size determination, determined activity, symmetry considerations, and particle shape indicate that supercomplex A has a central dimer of complex III and two monomers of complex IV on opposite sides. This conformation is functionally reasonable because it provides each complex III monomer with one complex IV monomer as electron acceptor. Therefore, the stoichiometry of supercomplex A is most likely III2IV2. The sensitivity of supercomplex A to detergents indicated a role of phospholipids in its stability. Therefore, a method for phospholipid identification and quantification was developed that is suitable for detergent solubilised crude and purified membrane protein samples. The analysis combines separation of phospholipid classes according to their head group by normal phase high performance liquid chromatography with evaporative light scattering detection. Calibration with external standard allows quantification of phospholipid amount in the range of 0.25-12 μg. The method is verified by analysing the phospholipid content of the well characterised complex III of Saccharomyces cerevisiae. The reduction of its phospholipid content during its purification steps is monitored. The complex III sample purified to crystallisation quality contains the phospholipid content that was also observed in previously reported structures determined by X-ray crystallography. Purified stable supercomplex A from C. glutamicum revealed a large content of bound phospholipids. The main differences between intact supercomplex A and a mixture of potentially disintegrated smaller complexes is that intact supercomplex A has a doubled phosphatidic acid content and an increased phosphatidyl glycerol content. The importance of the small anionic phosphatidic acid for mediation of contacts between complexes in a supercomplex is discussed. The total phospholipid content of stable supercomplex A is sufficient for a complete belt surrounding the supercomplex in the membrane plane. This indicates that also all essential internal phospholipid binding positions are occupied and potentially stabilise supercomplex A.
On Urnatella gracilis
(1893)
Evidence from archaeological fish bone assemblages from the southern North Sea region of Europe is used to illuminate fishing, fish consumption and fish trade from the 1st to the 16th century AD. The fish species represented in the material indicate a very strong influence from the local fish fauna at almost all sites. The species and size of the fish indicate that several fishing methods have been employed throughout the period studied, including nets, hooks and weirs. A chronological development in fishing, for example, a tendency towards more sea-going fishing, is reflected in the fish bone assemblages in some countlres. Evidence from fishing in the Baltic region from the 5th century BC to the 16th century AD is included in the discussion. Indications of fish trade include bones of exotic species (for instance, matinc species at inland sites) and an unbalanced representation of skeletal clements (trade with decapitated stockfish or gillless hering). Of particular interest are assemblages which indicate a fish industry, for instance, large-scale processing (removal of gills) of herring in 13th century Denmark.
Observations on fish scales
(1913)
Ataxin-2 is a novel protein, within which the unstable expansion of a polyglutamine domain can cause Spinocerebellar Ataxia type 2 (SCA2), a neurodegenerative disease which belongs to the group of polyglutamine disorders. SCA2 is characterised by a progressive loss of neurons that first affects the cerebellum and brain stem and then may extend to other areas of the brain, like substantia nigra, motoneurons and thalamus. Several lines of research have attempted to determine therole of ataxin-2 in its normal and mutant version. Different animal models and cell culture approaches to study ataxin-2 function implicated ataxin-2 in RNA processing, embryonic development, apoptosis and cytoskeleton. However, the function of ataxin-2 still remains unclear. In this thesis, a protein interaction approach was chosen as an alternative to gain insights into the cellular function of ataxin-2. Full-length ataxin-2 was used as bait in a yeast two-hybrid screen of human adult brain cDNA. Among five candidate interactor proteins identified, two were the endophilins A1 and A3, proteins involved in vesicle endocytosis. Co-immunoprecipitation studies confirmed the association of these proteins in an endogenous complex of mouse brain. In vitro binding experiments narrowed the binding interfaces down to two proline-rich domains on ataxin-2, which interacted with the SH3 domain of endophilins A1/A3. Ataxin-2 and endophilins A1/A3 colocalised at the endoplasmic reticulum as determined by immunofluorescence microscopy of transfected cell lines, and by centrifugation fractionation studies of mouse brain. Importantly, the pattern observed in transfected cells was conserved in untransfected rat hippocampal neurons. In mouse brain, associations of ataxin-2 with endocytic proteins such as the adaptor CIN85, the ubiquitin ligase c-Cbl and also GRB2, in the last case by means of a SH3 domain array chip, were also demonstrated. GST pull-down assays showed ataxin-2 to interact directly with the SH3 domains A and C of CIN85, the C-terminal SH3 domain of GRB2, and the SH3 domain of Src, a kinase activated after receptor stimulation. Functional studies demonstrated that ataxin-2 affects endocytic trafficking of the epidermal growth factor receptor (EGFR) by reducing the EGFR internalisation after EGF stimulation. Taken together, these data implicate ataxin-2 to play a role in endocytic receptor cycling.
Genetic analysis of salt adaptation in Methanosarcina mazei Gö1 : the role of abl, ota and otb genes
(2008)
1. M. mazei ist ein halotolerantes methanogenes Archäon und akkumuliert kompatible Solute als längerfristige Anpassung an erhöhte Osmolarität in der Umgebung. Bei intermediären Salzkonzentrationen (~ 400 mM NaCl) wird vorzugsweise α-Glutamat gebildet und bei höheren Salzkonzentrationen (~ 800 mM NaCl) wird Nε-Acetyl-ß-Lysin zusätzlich zu Alpha-Glutamat synthetisiert. 2. Eine Analyse der intrazellulären Solutezusammensetzung mittels NMR ergab, dass M. mazei Glycin-Betain als Osmolyt akkumulieren kann. Für die Aufnahme von Glycin-Betain konnten zwei putative Glycin-Betain-Transporter in M. mazei identifiziert werden, Ota und Otb. Ota steht für „osmoprotectant transporter A“ und Otb für „osmoprotectant transporter B“. Das Genom von M. mazei wurde, nachdem es vollstänidg sequenziert war, nach Genen durchsucht, die eine Rolle bei der Aufnhame von Glycin-Betain oder anderen kompabtiblen Solute spielen könnten. Dafür wurde die Sequenz eines Substratbindeproteins eines bekannten bakteriellen Glycin-Betain-Transporters, opuAC aus B. subtillis als Referenzsequenz verwendet. Hierbei konnte ein Homolog, otaC, in M. mazei identifiziert werden. otaC ist Teil eines Genclusters, welches für einen ABC-Transporter kodiert. otb wurde bei einer genomweiten Expressionsanalyse zur Salzadaptation von M. mazei identifiziert. Es wurden Gene eines putativen ABC-Transporters identifiziert, die unter Hochsalzbedingungen leicht induziert waren. Es stellte sich heraus, dass es sich hierbei um einen zweiten putativen Glycin-Betain-Transporter handelte. Otb gehört auch zur Familie der ABC-Transporter. Vergleichsanalysen zeigten, dass die beiden Transporter keine große Ähnlichkeit zueinander aufweisen. Die Funktion und Rolle der beiden ABC-Transporter, vor allem von Otb, war zu Beginn dieser Arbeit unklar. 3. Bei Analysen des intrazellulären Solutepools im Wildtyp von M. mazei stellte sich heraus, dass in Anwesenheit von Glycin-Betain die Konzentration von Glutamat und NE- Acetyl-ß-Lysin verringert war. Bei 400 mM NaCl reduzierte Glycin-Betain die Glutamat- Konzentration um 16% und bei 800 mM NaCl um 29%. Besonders deutlich zeigte sich der Einfluß von Glycin-Betain bei der Akkumulation von NE-Acetyl-ß-Lysin. Bei 400 mM NaCl reduzierte Glycin-Betain die Konzentration an NE-Acetyl-ß-Lysin um 60% und bei 800 mM NaCl um 50%. Der Einfluß von Glycin-Betain konnte auf verschiedenen Ebenen in M. mazei beobachten werden. Es konnte gezeigt werden, dass die relative Transkriptimenge von ota unter Hochsalzbedingungen zunimmt. Glycin-Betain reduzierte die Transkription von ota bei verschiedenen Salzkonzentrationen. Die relative Transkriptmenge an mRNA von ota wurde mittels quantitativer real-time PCR (qRT-PCR) quantifiziert und war bis zu 52% reduziert in Zellen, die in Gegenwart von Glycin-Betain gewachsen waren. Die Transkriptmenge von otb war unter den gleichen Bedingungen nicht beeinflusst und zeigte generell keine Zunahme mit der Salinität des Mediums. Des Weiteren konnte ein Effekt von Glycin-Betain auf Ebene der Transportaktivität von Ota gezeigt werden. Hier zeigte sich, dass Zellen, die bei 400 mM NaCl in Gegenwart von Glycin-Betain gezogen waren, eine geringere Transportaktivität aufweisen, als Zellen, die bei 400 mM NaCl ohne Glycin-Betain gewachsen waren. Die Transportaktivität war um 90% geringer. Es muss jedoch berücksichtigt werden, dass es sich bei den Zellen, die ohne Glycin-Betain gewachsen waren, um eine Nettoaufnahme von Glycin-Betain handelte. Im Gegensatz dazu, ist davon auszugehen, dass Zellen, die in Gegenwart von Glycin-Betain gewachsen waren, eine Austaschreaktion zwischen bereits vorhandenem intrazellulärem und extrazellulär angebotenem Glycin-Betain vornehmen. [Die dem letzten Punkt zugrundeliegenden Daten wurden von Silke Schmidt im Rahmen einer Diplomarbeit erhoben, die von mir mitbetreut wurde. Aus Gründen der vollständigen Darstellung des Projektverlaufes werden diese Daten mitaufgeführt.] 4. Zur weiteren Klärung der Rolle und Funktion der beiden putativen Glycin-Betain- Transporter Ota und Otb war es Ziel, Mutantenstudien durchzuführen. Eine Vorraussetzung für die Generierung von Mutanten ist, dass der Organismus auf Agarplatten wächst und Einzelkolonien von einer einzelnen Zelle ausgehend bildet. Dies ist ein wichtiger Punkt bei Methanosarcina spp., die Zellpakete, sogenannte Sarcinen bilden. Deshalb wurde zunächst nach den optimalsten Plattierungsbedingungen gesucht, unter denen M. mazei keine Sarcinen bildet und die Plattierungseffizienz am höchsten war. Die Plattierungseffizienz betrug im Durchschnitt 54%. Für das Einbringen von DNA in die Zellen wurde eine Liposomen-vermittelte Transformation getestet. Ein ähnliches Vorgehen war bereits für Methanosarcina acetivorans beschrieben, konnte bislang aber noch nicht erfolgreich für M. mazei Gö1 und andere Stämme von M. mazei angwendet werden. Erste Schritte zur Anpassung des Transformations-Protokolles beinhalteten das Testen von DOTAP verschiedener Hersteller, sowie die Konzentration an eingesetzter DNA. Das jeweilige Zielgen/Zieloperon, welches deletiert werden sollte, wurde durch eine pac-Kassette ersetzt. Diese kodiert für eine Puromycin-Transacetylase und verleiht dem Organismus Puromycin- Resistenz. Die pac-Kassette wurde von umgebenden Bereichen des Ziellocus flankiert und integrierte mit Hilfe dieser flankierenden Bereiche über doppelt-homologe Rekombination in das Genom. 5. Mit dem oben beschriebenen Verfahren wurden ota::pac- und otb::pac-Mutanten erzeugt und über Southern-Blot Analyse verifiziert. Eine erste Charakterisierung der Mutanten mittels qRT-PCR zeigte, dass auf mRNA-Ebene keine Transkripte von ota in M. mazei ota::pac oder otb in M. mazei otb::pac nachweisbar waren. Zusätzlich konnte auf Proteinebene das Substratbindeprotein OtaC in M. mazei ota::pac und OtbC in M. mazei otb::pac nicht über einen Antikörper gegen das jeweilige Substratbindeprotein nachgewiesen, was die erfolgreiche Deletion bestätigte. Erste phänotypische Charakterisierungen zeigten, dass das Wachstum von M. mazei ota::pac und M. mazei otb::pac unter Hochsalzbedingungen nicht beeinträchtigt und vergleichbar mit dem des Wildtyps war. Auch bei kälteren Wachstumstemperaturen von 22°C wuchsen die Mutanten ohne Phänotyp. 6. Radioaktive Transportstudien mit M. mazei otb::pac zeigten, dass diese Mutante, die noch ein funktionelles Ota besitzt, [14C]Glycin-Betain aufnehmen kann. Es stellte sich heraus, dass diese Mutante eine höhere Transportrate für Glycin-Betain aufwies, als der Wildtyp. Die Aufnahmerate war um einen Faktor 2 höher als beim Wildtyp. Zusätzlich konnten qRT-PCR Analysen zeigen, dass die relative Transkriptmenge an ota in der otb::pac-Mutante um einen Faktor 2 höher war, als im Wildtyp. Umgekehrt konnte dieser Effekt nicht beobachtet werden, d.h. eine erhöhte Transkriptmenge an otb in M. mazei ota::pac. Auf Proteinebene konnte beobachtet werden, dass die intrazelluläre Konzentration an OtaC in der Mutatne leicht höher war als im Wildtyp. Jedoch stellte sich heraus, dass die intrazelluläre Glycin-Betain-Konzentration bei 400 mM NaCl in der Mutante nicht erhöht war verglichen mit Wildtyp, sondern die Konzentrationen gleich waren. Bei höheren Salzkonzentrationen (800 mM NaCl) zeigte sich jedoch ein anderes Bild: die intrazelluläre Glycin-Betain-Konzentration war in der Mutante um 60% erhöht. Dies könnte auf die erhöhte Transportaktivität von M. mazei otb::pac zurückzuführen sein. Die Konzentration anderer kompatibler Solute wie Glutamat und NE-Acetyl-ß-Lysin waren in diesen Zellen bis zu 48% reduziert. In vorherigen Studien konnte gezeigt werden, dass heterolog überproduziertes Ota von M. mazei in E. coli MKH13, eine E. coli-Mutante, die keine Glycin-Betain-Transporter mehr besitzt, die Aufnahme von Glycin-Betain wieder herstellen konnte [die Daten von ota in E. coli MKH13 wurden in der bereits oben erwähnten Diplomarbeit von Silke Schmidt erhoben]. Zur Klärung der Funktion von Otb wurde der gleiche Versuch mit otb in E. coli MKH13 durchgeführt. Jedoch konnte eine heterologe Produktion von Otb aus M. mazei die Aufnahme von Glycin-Betain in E. coli MKH13 nicht wieder herstellen. Hierbei wurde über Western-Blot Analyse sichergestellt, dass Otb tatsächlich in der Membran vorhanden war. Auch Transportstudien mit der Mutante M. mazei ota::pac zeigten, dass diese Mutante kein [14C]Glycin-Betain mehr aufnehmen konnte. Es konnte auch keine Akkumulation von Glycin-Betain mittels NMR in dieser Mutante gemessen werden. Des Weiteren zeigte sich, dass die intrazellulären Konzentrationen an Glutamat und Nε-Acetyl-ß-Lysin bei 400 mM und 800 mM NaCl in der Mutante unbeeinflusst von der Glycin-Betain-Konzentration im Medium waren. Weitere Transportstudien mit M. mazei ota::pac zur Aufnahme von [14C]Cholin zeigten, dass dieses Molekül weder vom Wildtyp, noch von der Mutante aufgenommen wurde. Dieses Ergebnis wurde durch Messung des Solutepools mittels NMR bestätigt. Somit kann ausgeschlossen werden, dass Otb unter den gemessenen Bedingungen weder ein Glycin- Betain-Transporter noch ein Cholin-Transporter in M. mazei ist. Diese Beobachtungen belegen eindeutig, dass Ota der einzige funktionelle Glycin-Betain-Transporter in M. mazei ist, während die Rolle von Otb bislang noch ungeklärt ist. 7. Nε-Acetyl-ß-Lysin, das dominante kompatible Solut in M. mazei bei 800 mM NaCl, wird durch die Enzyme AblA, einer Lysin-2,3-Aminomutase und AblB, einer ß-Lysin- Acetyltransferase synthetisiert. In dieser Arbeit wurde eine Δabl::pac-Mutante generiert, um die Fragen zu klären, ob die beiden Enzyme vom postulierten abl-Operon kodiert werden und wenn ja, welchen Phänotyp eine Nε-Acetyl-ß-Lysin-freier-Mutante bei Salzstress zeigt. NMR-Analysen zeigten, dass in der abl::pac-Mutante kein Nε-Acetyl-ß-Lysin mehr nachweisbar war. Dies belegt, dass die Gene ablA und ablB und deren Genprodukte für die Synthese von NE-Acetyl-ß-Lysin in M. mazei essentiell sind. Unter Hochsalzbedingungen ist das Wachstum von M. mazei abl::pac im Vergleich zum Wildtyp deutlich verlangsamt. Dieses Ergebnis war unerwartet, da eine abl::pac-Mutante von Methanococcus maripaludis unter Hochsalzbedingungen nicht mehr wachsen konnte. Unter Niedrigsalz und bei intermediären Salzkonzentration war das Wachstum von M. mazei abl::pac nicht eingeschränkt und verhielt sich wie der Wildtyp. In Gegenwart von Glycin-Betain akkumulierte die abl::pac-Mutante von M. mazei unter Hochsalzbedingungen 2,4 mal mehr Glycin-Betain als der Wildtyp, um das Defizit im Solutepool auszugleichen und Wachstum bei Hochsalz zu ermöglichen. Dadurch war sie in der Lage, wieder wie der Wildtyp zu wachsen. 8. Der Verlust von NE-Acetyl-ß-Lysin wurde unter Hochsalzbedingungen durch erhöhte Konzentrationen an Glutamat und einem neuen kompatiblen Solut kompensiert. NMRAnalysen zeigten, dass es sich hierbei um Alanin handelte. Bis jetzt wurde die Verwendung von Alanin als kompatibles Solut noch nie beschrieben. Um sicherzustellen, dass Alanin als kompatibles Solut in M. mazei abl::pac dient, wurde die Konzentration bei verschiedenen Salzkonzentrationen gemessen. Die Konzentration an Alanin nahm mit steigender Salzkonzentration zu. Bei 800 mM NaCl war die Konzentration 12 fach erhöht verglichen mit der Konzentration bei 400 mM NaCl. Außerdem redzierte Glycin-Betain die Alanin- Konzentration bei 800 mM NaCl um 58%. Transportexperimente zeigten, dass M. mazei kein Alanin aus dem Medium aufnehmen kann. 9. Erste Analysen möglicher Synthesewege für Alanin zeigten, dass die Alanin- Dehydrogenase nicht auf Transkriptebene unter Hochsalzbedingungen induziert war und somit keine Rolle in der Synthese von Alanin als kompatibles Solut spielen dürfte. Es könnten jedoch Aminotransferasen eine Rolle bei der Biosynthese von Alanin spielen. Des Weiteren sind die Enzyme, die für die Synthese von Glutamat als kompatibles Solut verantwortlich sind, unbekannt. Dies gilt für alle bis jetzt untersuchten Organismen, die Glutamat als kompatibles Solut nutzen. In dieser Arbeit wurde versucht, mit Hilfe der abl::pac-Mutante, die erhöhte Glutamat-Mengen zum Osmoschutz produziert, der Frage nachzugehen, welche Gene/Enzyme eine Rolle spielen könnten bei der Synthese von Glutamat als kompatibles Solut. Dazu wurden unter Hochsalzbedingungen die Transkriptmengen verschiedener Genen, die an der Glutamat-Synthese beteiligt sein könnten, in der Mutante und im Wildtyp untersucht. Hierbei zeigte sich, dass mehrere Gene verschiedener Enzyme unter Hochsalzbedingungen in der Mutante leicht induziert waren. Eines dieser Enzyme ist die Glutaminsynthetase. Dieses Enzym ist für die Umsetzung von Glutamat zu Glutamin unter Verbrauch von ATP verantwortlich. M. mazei besitzt zwei Gene, die für eine putative Gluaminsynthetase kodieren. In M. mazei abl::pac ist unter Hochsalzbedingungen das Gen glnA2 im Vergleich zum Wildtyp (4,03 ± 1,14) leicht induziert (7,63 ± 2,2). Des weiteren konnte in der Mutante eine leichte Induktion von gltB1, gltB2 und gltB3 unter Hochsalz beobachtet werden. Diese Gene kodieren für die einzelnen Domänen einer Glutamatsynthase. Diese ersten Analysen geben einen Hinweis darauf, dass die Synthese von Glutamat als kompatibles Solut über eine gekoppelte Reaktion der Glutaminsynthetase und der Glutamatsynthase verlaufen könnte.