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Zebragryllus Desutter-Grandcolas & Cadena-Castañeda, 2014 is a Neotropical genus of field crickets that inhabits the leaf litter of the Amazon rainforest. The genus has six species and is characterized by the distinct ‘zebra’ pattern displayed by some of them. The species are recorded in French Guiana, Peru, and Colombia. Here, we describe two new species of the genus from the Brazilian Amazon rainforest, the first record of the genus for Brazil. We expand the records of Z. guianensis Desutter-Grandcolas, 2014 and Z. nouragui Desutter-Grandcolas, 2014 to Brazil. We also describe but do not name two females corresponding to two new species, provide an up-to-date key for species of Zebragryllus, and discuss the potential distribution for the genus.
Angel sharks (Squatina spp. Duméril, 1805) are a group of coastal benthic sharks distributed worldwide, currently including threatened and understudied species. Two species are formally described along the East Pacific coast, the California angel shark S. californica Ayres, 1859 and the Chilean angel shark S. armata (Philippi, 1887). The latter species occurs in the southeastern Pacific and has historically been understudied. Additionally, the original description of S. armata lacks sufficient data to confidently identify individuals of this species compared to modern descriptions, and no type specimen is currently available to ensure specimen identification. Detailed morphological descriptions for identifying species are an essential resource for solving taxonomic issues in groups of morphologically similar species and to promote the conservation of critically endangered species. Therefore, a neotype from the type locality is here designated for S. armata, and a detailed and standardized morphological characterization based on modern taxonomic works is provided. This work contributes in improving the knowledge on the Chilean angel shark taxonomy and provides an improved frame of reference for identifying angel sharks in the East Pacific, especially in areas where species may occur in sympatry.
Establishing management programs to preserve the benthic communities along the NW Pacific and the Arctic Ocean (AO) requires a deep understanding of the composition of communities and their responses to environmental stressors. In this study, we thus examine patterns of benthic community composition and patterns of species richness along the NW Pacific and Arctic Seas and investigate the most important environmental drivers of those patterns. Overall we found a trend of decreasing species richness toward higher latitudes and deeper waters, peaking in coastal waters of the eastern Philippines. The most dominant taxa along the entire study area were Arthropoda, Mollusca, Cnidaria, Echinodermata, and Annelida. We found that depth, not temperature, was the main driver of community composition along the NW Pacific and neighboring Arctic Seas. Depth has been previously suggested as a factor driving species distribution in benthic fauna. Following depth, the most influential environmental drivers of community composition along the NW Pacific and the Arctic Ocean were silicate, light, and currents. For example, silicate in Hexactinellida, Holothuroidea, and Ophiuroidea; and light in Cephalopoda and Gymnolaemata had the highest correlations with community composition. In this study, based on a combination of new samples and open-access data, we show that different benthic communities might respond differently to future climatic changes based on their taxon-specific biological, physiological, and ecological characteristics. International conservation efforts and habitat preservation should take an adaptive approach and apply measures that take the differences among benthic communities in responding to future climate change into account. This facilitates implementing appropriate conservation management strategies and sustainable utilization of the NW Pacific and Arctic marine ecosystems.
Diversity and distribution of intertidal Microporella (Bryozoa: Cheilostomatida) from California
(2024)
Seven species of the cheilostome bryozoan genus Microporella were identified across 15 rocky intertidal sites spanning 940 km of the California coast, from Mill Creek in the Montereyan Pacific Transition Region north to Point Saint George in the Mendocinian Region. Colonies of Microporella were found encrusting boulders and mollusc shells. Among these species, three are new to science, namely Microporella dentata Chowdhury & Di Martino sp. nov., M. pauciperforata Chowdhury & Di Martino sp. nov. and M. rota Chowdhury & Di Martino sp. nov. Three other species, M. californica, M. setiformis, and M. umbonata have previously been recorded from other localities in California. Finally, Microporella neocribroides, originally described from off Kodiak Island, Alaska, and subsequently found in Hokkaido, Japan, was recorded in California for the first time. An additional new species, M. similis Chowdhury & Di Martino sp. nov., was identified through the re-examination of museum material previously attributed to M. cribrosa and M. californica. These newly acquired data allowed for a more comprehensive examination of the distribution of species, intraspecific variability, and potential predator-induced teratologies in certain species, thanks to the availability of numerous colonies from various sites and the re-examination of museum records. Altogether, this study increases the known Recent diversity of Microporella in California’s waters to a total of 18 species.
Two new endemic genera of Therevinae are described from Madagascar. Rinhatiana gen. nov. contains three new species (R. arctifestuca gen. et sp. nov., R. cracentis gen. et sp. nov. and R. latifestuca gen. et sp. nov.) as well as R. distincta (Lyneborg, 1976) comb. nov., which is transferred from Stenopomyia Lyneborg, 1976. Tianarinha gen. nov. is described containing two new species, T. goodmani gen. et sp. nov. and T. micet gen. et sp. nov. All species are diagnosed and figured along with distribution data.
The cleptoparasitic bee genus Triepeolus Robertson, 1901 (Hymenoptera: Apidae) is revised for species occurring in South America. A total of nine species are confirmed from the continent, of which T. tuberculifer Onuferko, Rightmyer & Roig-Alsina sp. nov. is newly described. Four new synonymies are proposed: T. aguilari Moure, 1955 syn. nov. and T. megadelphus Cockerell, 1914 syn. nov. under T. buchwaldi (Friese, 1908); T. bilineatus Cockerell, 1949 syn. nov. under T. flavipennis (Friese, 1916); and Epeolus merus Brèthes, 1909 syn. nov. under T. nemoralis (Holmberg, 1886). Males of T. alvarengai Moure, 1955 and T. rufotegularis (Ashmead, 1900) and females of T. atoconganus Moure, 1955 and T. cecilyae Packer, 2016 are described for the first time. Lectotypes are designated for the following (all originally described under Epeolus Latreille, 1802 but now recognized as Triepeolus): E. buchwaldi, E. flavipennis, E. osiriformis Schrottky, 1910 and its junior synonym E. luteipes Friese, 1916, and E. rufotegularis. Diagnoses and complete descriptions/redescriptions are provided for all species, along with a fully illustrated dichotomous identification key (with Portuguese and Spanish versions available as supplementary material) to distinguish them based on external morphological features. Additionally, known collection records and information about the ecology of the treated species are presented.
Background: Genome sequencing of all known eukaryotes on Earth promises unprecedented advances in biological sciences and in biodiversity-related applied fields such as environmental management and natural product research. Advances in long-read DNA sequencing make it feasible to generate high-quality genomes for many non–genetic model species. However, long-read sequencing today relies on sizable quantities of high-quality, high molecular weight DNA, which is mostly obtained from fresh tissues. This is a challenge for biodiversity genomics of most metazoan species, which are tiny and need to be preserved immediately after collection. Here we present de novo genomes of 2 species of submillimeter Collembola. For each, we prepared the sequencing library from high molecular weight DNA extracted from a single specimen and using a novel ultra-low input protocol from Pacific Biosciences. This protocol requires a DNA input of only 5 ng, permitted by a whole-genome amplification step.
Results: The 2 assembled genomes have N50 values >5.5 and 8.5 Mb, respectively, and both contain ∼96% of BUSCO genes. Thus, they are highly contiguous and complete. The genomes are supported by an integrative taxonomy approach including placement in a genome-based phylogeny of Collembola and designation of a neotype for 1 of the species. Higher heterozygosity values are recorded in the more mobile species. Both species are devoid of the biosynthetic pathway for β-lactam antibiotics known in several Collembola, confirming the tight correlation of antibiotic synthesis with the species way of life.
Conclusions: It is now possible to generate high-quality genomes from single specimens of minute, field-preserved metazoans, exceeding the minimum contig N50 (1 Mb) required by the Earth BioGenome Project.
The use of integrative taxonomy has confirmed the existence of a new distinct crab species, cryptic, within the group of the former genus Liocarcinus, now Polybius, closely related to P. holsatus, P. vernalis and P. marmoreus. Previous reports have considered it to be the Atlantic form of P. vernalis, or as a species “affinis” or “comparable to” P. holsatus. Diagnostic morphological characters are presented for identification and the morphological variability in these species, mainly within P. vernalis (the most related) is analysed. Furthermore, based on molecular and other previous data, a new combination (genus change) is proposed. This new species, Polybius dioscurus sp. nov., lives on infralittoral sandy bottoms, coexisting with the other species mentioned, in the temperate and subtropical zone of the North Atlantic Ocean, including the Alboran Sea (westernmost Mediterranean).
Two new species of Strandesia Stuhlmann, 1888 are described from the northeastern part of Thailand: S. karanovicae sp. nov. and S. amnatcharoenensis sp. nov. Strandesia karanovicae is characterized by a tumid carapace in dorsal view, a small anterior overlap, the absence of a dorso-subapical seta on the first segment of the antennule (A1), a large aesthetasc Y on the antenna, an α seta shape with a needle-like tip and a large β seta on the mandibular palp (Md-palp), serrated bristles on the maxilla, a long h1 seta on the second thoracopod (T2) and a slender caudal ramus (CR). Strandesia amnatcharoenensis has a small compressed posterior part of the right valves (RV) which makes it closely related to S. pholpunthini Savatenalinton, 2015. The new species can be distinguished primarily by a considerably small anterior overlap of the left valve over the right valve (RV), a postero-ventral flange of the RV, a remarkably large claw Ga of the CR and the chaetotaxy of the limbs, especially A1, Md-palp and T2. In addition, in the present study, the sexual population of S. martensi Savatenalinton, 2015 is recorded for the first time, and thus the first description of the male is provided here. Moreover, the morphological examination of both males and females revealed differences between asexual and sexual females and also points to the fact that S. martensi is a mixed reproduction species. This is the first record of the mixed reproductive mode in the genus Strandesia or even in the Cypricercinae.
The snake pipefish, Entelurus aequoreus (Linnaeus, 1758), is a slender, up to 60 cm long, northern Atlantic fish that dwells in open seagrass habitats and has recently expanded its distribution range. The snake pipefish is part of the family Syngnathidae (seahorses and pipefish) that has undergone several characteristic morphological changes, such as loss of pelvic fins and elongated snout. Here, we present a highly contiguous, near chromosome-scale genome of the snake pipefish assembled as part of a university master’s course. The final assembly has a length of 1.6 Gbp in 7,391 scaffolds, a scaffold and contig N50 of 62.3 Mbp and 45.0 Mbp and L50 of 12 and 14, respectively. The largest 28 scaffolds (>21 Mbp) span 89.7% of the assembly length. A BUSCO completeness score of 94.1% and a mapping rate above 98% suggest a high assembly completeness. Repetitive elements cover 74.93% of the genome, one of the highest proportions so far identified in vertebrate genomes. Demographic modeling using the PSMC framework indicates a peak in effective population size (50 – 100 kya) during the last interglacial period and suggests that the species might largely benefit from warmer water conditions, as seen today. Our updated snake pipefish assembly forms an important foundation for further analysis of the morphological and molecular changes unique to the family Syngnathidae.
Highlights
• Genomes for all five Natrix species, two represented by two distinct subspecies each, were sequenced.
• Two genomes were de-novo assembled to their 1.7 Gb length with a contig N50 of 4.6 Mbp and 1.5 Mbp.
• Evidence for interspecific hybridization, both between allopatric and widely sympatric species.
• Fossil-calibrated molecular clock using genomes indicates that species are ancient several million-year-old lineages.
• Our findings imply that speciation took place despite continued gene flow.
Abstract
Understanding speciation is one of the cornerstones of biological diversity research. Currently, speciation is often understood as a continuous process of divergence that continues until genetic or other incompatibilities minimize or prevent interbreeding. The Palearctic snake genus Natrix is an ideal group to study speciation, as it comprises taxa representing distinct stages of the speciation process, ranging from widely interbreeding parapatric taxa through parapatric species with very limited gene flow in narrow hybrid zones to widely sympatric species. To understand the evolution of reproductive isolation through time, we have sequenced the genomes of all five species within this genus and two additional subspecies. We used both long-read and short-read methods to sequence and de-novo-assemble two high-quality genomes (Natrix h. helvetica, Natrix n. natrix) to their 1.7 Gb length with a contig N50 of 4.6 Mbp and 1.5 Mbp, respectively, and used these as references to assemble the remaining short-read-based genomes. Our phylogenomic analyses yielded a well-supported dated phylogeny and evidence for a surprisingly complex history of interspecific gene flow, including between widely sympatric species. Furthermore, evidence for gene flow was also found for currently allopatric species pairs. Genetic exchange among these well-defined, distinct, and several million-year-old reptile species emphasizes that speciation and maintenance of species distinctness can occur despite continued genetic exchange.
The genus Jambu gen. nov. is proposed based on two new species: Jambu paru gen. et sp. nov. and Jambu manoa gen. et sp. nov. Hapalopus butantan is transferred to Jambu; consequently, Jambu butantan gen. et comb. nov. is proposed. The geographic distribution of J. butantan is extended on the basis of new material collected. The new genus and the new species are here diagnosed, described and illustrated. The shape of the genitalia of Jambu resembles that of Hapalopini but differs from most of them by the presence of type IV urticating setae. The presence of this type of urticating setae allows us to hypothesize that this new genus is phylogenetically related with Grammostolini. Males of Jambu differ from those of other genera of Grammostolini by the presence of a paraembolic apophysis on the palpal bulb. Females also differ from those of other Grammostolini by the spermathecae morphology, with one medial lamp-shaped or heart-shaped receptacle. The homology of some features and the taxonomic placement of the new genus are discussed.
The ant genus Syscia Roger, 1861 is a cryptobiotic group of the subfamily Dorylinae. In this study, eight species of this genus from Asia are recognized, including two new species, Syscia arcodorsa sp. nov. and S. zhoui sp. nov., both described from Guangxi in China. In addition, Cerapachys guizhouensis Zhou, 2006 is redescribed and transferred to Syscia as S. guizhouensis (Zhou, 2006) comb. nov. The species Syscia typhla Roger, 1861 is removed from the ant fauna of China. Lastly, a key to species of Syscia from Asia based on the worker caste is presented.
Four new species of the jumping spider genus Stenaelurillus Simon, 1886 are described from India: Stenaelurillus feral Tripathi, Kuni & Kadam sp. nov. (♂, from the Eastern Coastline), S. naldurg Kuni, Kadam & Tripathi sp. nov. (♂♀, from the Deccan Plateau), S. judithbleisterae Kadam, Tripathi & Kuni sp. nov. (♂♀, from the Western Ghats) and S. solapur Kuni, Tripathi & Kadam sp. nov. (♂♀, from the Deccan Plateau). Detailed diagnoses, descriptions, illustrations, natural history and distribution map are provided. Additionally, new locality records for the other five species within the states are presented and mapped.
In this study, I describe two new species of Macrobiotus based on morphological data collected through light and scanning electron microscopy. Both species are accompanied by DNA sequences from four commonly used molecular markers (18S rDNA, 28S rDNA, ITS-2, and COI). Macrobiotus ovovittatus sp. nov. was discovered in Greenland and can be distinguished from similar taxa of Macrobiotus by its continuous, solid, and clearly wrinkled egg surface, adorned with sparse, very small and irregularly spaced pores. Additionally, the terminal discs of egg processes are covered in multiple light-refracting dots, resembling crocheted napkins. Macrobiotus mileri sp. nov. was found in Israel and is characterized by unique pore arrangements in its body cuticle, expressed in two distinct animal forms: (i) forma porata with large pores arranged in five distinct patches and (ii) forma aporata with single, almost undetectable pores. It also features weakly defined convex terminal discs with smooth edges. Furthermore, the phylogenetic analyses conducted in this study offer the most updated phylogeny of superclade I within the family Macrobiotidae. This facilitates additional discussion concerning the interrelationships among species within the genus Macrobiotus and the circumscription of species groups within it.
In the vast abyssal plains northwest of Iceland, white glass sponges of the genus Caulophacus Schulze, 1886 were inhabited by reddish Bythocaris G.O. Sars, 1870 shrimps and pinkish amphipods. After in situ observations at 3700 m depth, in -1°C waters by a remotely operated vehicle, members of this assemblage were collected and preserved for molecular studies. Based on integrative taxonomic analyses, the amphipods were identified as a new species of the genus Halirages Boeck, 1871 – Halirages spongiae sp. nov. Lörz, Nack & Tandberg –, as described in detail below. Part of our integrative approach was to establish reference DNA barcodes for known species of Halirages. However, our investigation of material of Calliopiidae G.O. Sars, 1895 collected around Iceland and Norway revealed slight morphological discrepancies in all the described species of Halirages. Except for Halirages fulvocinctus (M. Sars, 1858), none of the encountered specimens of Calliopiidae fully matched a current species description. We illuminate the morphological characteristics of nine operational taxonomic units, which also represented clades in COI and 28S. We set the Icelandic samples in the context of Halirages from Canada and Norway. A key to the world species of Halirages is provided.
Cicadellinae is a relatively large subfamily of leafhoppers (Hemiptera: Cicadellidae) with a cosmopolitan distribution with most genera known to occur in the Neotropics. Mexico houses nearly 16% of the total genera and most are endemic, inhabiting threatened native forests. Here, a new unusual Mexican genus, Christopherus gen. nov., is described to accommodate a new species of Cicadellini, C. mictlantecuhtli sp. nov., collected in the endangered Cloud Forest of Sierra Juárez, Oaxaca State of Mexico, based on dry-pinned museum specimen data. The new taxa can be separated from other Neotropical Cicadellini genera easily using male genitalia features: (i) pygofer without processes, (ii) segment 10th without processes, (iii) paraphysis absent, and (iv) edeagus with single basal atrial process elongate and asymmetrical. The monotypic genus Gillonella with its type species, G. ampulla Nielson & Godoy, 1995, are redescribed. A detailed extensive morphological description and discussion to distinguish the new genus from allied red-striped Neotropical genera in Mexico, Central America, and South America are given. Distributional data for new taxa within Mexican forests is also provided.
A re-analysis of the morphological phylogeny of the Nopinae is made, based on an update in the description of Aamunops Galán-Sánchez & Álvarez-Padilla, 2022 and the addition of the recently described genera Nopsma Sánchez-Ruiz, Brescovit & Bonaldo, 2020 and Roddemberryus Sánchez-Ruiz & Bonaldo, 2023. Two new species, Aamunops hoof sp. nov. (male) and Aamunops yiselae sp. nov. (male and female), are also described, which allows a better understanding of the genus morphology and resulted in an emended diagnosis. The description of Aamunops has been updated to include several characteristics of the ultrastructural morphology, legs, chelicerae, palps and female genitalia. The inclusion of these new characters of Aamunops along with those of Nopsma and Roddemberryus in the previous data matrix resulted in a new, completely different hypothesis of the relationships of the nopine genera: Nopsma is part of a group formed by Cubanops and Nyetnops, while Aamunops and Roddemberryus are grouped with representatives of Tarsonops. The four-eyed Nopsides ceralbonus Chamberlin, 1924 was recovered as the most basal species of Nopinae. The relationships among genera of Nopinae and the phylogenetic position of three species, whose taxonomic position is doubtful (Cubanops luquillo Sánchez-Ruiz, Brescovit & Alayón, 2015, Orthonops confuso Galán-Sánchez & Álvarez-Padilla, 2022 and Tarsonops irataylori Bond & Taylor, 2013), is also discussed.