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A new genus and species of Parabathynellidae (Crustacea: Bathynellacea), Megabathynella totemensis Camacho & Abrams gen. et sp. nov., is described from the Northern Territory, Australia. This species is the first to be described from an Australian cave. It is a new giant species (4 to 6 mm). The new species displays several unique morphological character states within Parabathynellidae and is the only known species with: more than 12 articles on antennules, with a short, curved barbed seta on each article from the fifth; eight setae on the last article of antennae; more than three setae on the mandibular palp; up to 17 articles on the exopod of the thoracopods, without ctenidia but with a strong spine on each article at the base of the external seta; strong row of pair of spines on latero-external side of second article of endopod in all thoracopods; the male thoracopod VIII is different from all those known; more than 50 spines on the sympod of the uropod and more than 35 spines on the furcal rami. Specimens of the new species are morphologically different from all known species, but more closely resemble some giant species of the genera Kampucheabathynella (Asia), and Billibathynella and Brevisomabathynella (Australia).
Five new species of the genus Phlugiolopsis Zeuner, 1940 (Tettigoniidae: Meconematinae) from China
(2024)
This paper reports five new species of Phlugiolopsis Zeuner, 1940 from Sichuan, Yunnan and Guangxi in China, i.e., Phlugiolopsis luojishanensis sp. nov., Phlugiolopsis lata sp. nov., Phlugiolopsis rongshuiensis sp. nov., Phlugiolopsis acuta sp. nov. and Phlugiolopsis daweishanensis sp. nov. We present a redescription of the male of Phlugiolopsis punctata Wang, Li & Liu, 2012, describe the female of Phlugiolopsis punctata Wang, Li & Liu, 2012 and the male of Phlugiolopsis pentagonis Bian, Shi & Chang, 2013 for the first time. In addition, images illustrating the morphology of these species and seven previously described species are provided. The distribution map of the genus Phlugiolopsis from China is also provided.
Highlights
• BaP exposure increases the mutation rate of C. riparius.
• BaP exposure is detrimental for the fitness and the population dynamics of C. riparius.
• Multi-generational studies are essential to assess evolutionary implications of anthropogenic substances on biodiversity.
Abstract
The release of polycyclic aromatic hydrocarbons (PAHs) into the environment is posing a threat to ecosystems and human health. Benzo(a)pyrene (BaP) is considered a biomarker of PAH exposure and is classified as a Group 1 carcinogen. However, it was not known whether BaP is mutagenic, i.e. induces inherited germline mutations. In this study, we used a recently established method, which combines short-term mutation accumulation lines (MAL) with whole genome sequencing (WGS) to assess mutagenicity in the non-biting midge Chironomus riparius. The mutagenicity analysis was supplemented by an evaluation of the development of population fitness in three successive generations in the case of chronic exposure to BaP at a high concentration (100 μg/L). In addition, the level of ROS-induced oxidative stress was examined in vivo. Exposure to the higher BaP concentration led to an increase in germline mutations relative to the control, while the lower concentration showed no mentionable effect. Against expectations, BaP exposure decreased ROS-level compared to the control and is thus probably not responsible for the increased mutation rate. Likewise, the higher BaP concentration decreased fitness measured as population growth rate per day (PGR) significantly over all generations, without signs of rapid evolutionary adaptations. Our results thus highlighted that high BaP exposure may influence the evolutionary trajectory of organisms.
In this second part of the study, using a ‘clean’ dataset without very low precision landmarks and outliers, I describe how to compare mandibular size and shape using Procrustes methods in adult North American marmots. After demonstrating that sex differences are negligible, females and males are pooled together with specimens of unknown sex and species are compared using a battery of tests, that estimate both statistical significance and effect size. The importance of allometric variation and its potential effect on shape differences is also explored. Finally, to provide potential clues on founder effects, I compare the magnitude of variance in mandibular size and shape between the Vancouver Island marmot (VAN) and the hoary marmot, its sister species on the mainland. In almost all main analyses, I explore the sensitivity of results to heterogeneous sample size and small samples using subsamples and randomized selection experiments. For both size and shape, I find a degree of overlap among species variation but, with very few exceptions, mean interspecific differences are well supported in all analyses. Shape, in particular, is an accurate predictor of taxonomic affiliation. Allometry in adults, however, explains a modest amount of within-species shape change. Yet, there is a degree of divergence in allometric trajectories that seems consistent with subgeneric separation. VAN is the most distinctive species for mandibular shape and mandibular morphology suggests a long history of reduced variation in this insular population. Geometric morphometrics (GMM) is a powerful tool to aid taxonomic research. Regardless of the effectiveness of this family of methods and the apparent robustness of results obtained with GMM, however, large samples and careful measurements remain essential for accuracy. Even with excellent data, morphometrics is important, but its findings must be corroborated with an integrative approach that combines multiple lines of evidence to taxonomic assessment. The analytical protocol I suggest is described in detail, with a summary checklist, in the Appendix, not to miss important steps. All the analyses can be replicated using the entire dataset, which is freely available online. Beginners may follow all the steps, whereas more experienced researchers can focus on one specific aspect and read only the relevant chapter. There are limitations, but the protocol is flexible and easy to improve or implement using a programming language such as R.
Taxonomy lays the foundations for the study of biodiversity and its conservation. Procrustean geometric morphometrics (GMM) is a most common technique for the taxonomic assessment of phenotypic population differences. To measure biological variation and detect evolutionarily significant units, GMM is often used on its own, although it is much more powerful with an integrative approach, in combination with molecular, ecological and behavioural data, as well as with meristic morphological traits. GMM is particularly effective in taxonomic research, when applied to 2D images, which are fast and low cost to obtain. Yet, taxonomists who may want to explore the usefulness of GMM are rarely experts in multivariate statistical analyses of size and shape differences. In these twin papers, I aim to provide a detailed step-by-step guideline to taxonomic analysis employing Procrustean GMM in user-friendly software (with tips for R users). In the first part (A) of the study, I will focus on preliminary analyses (mainly, measurement error, outliers and statistical power), which are fundamental for accuracy, but often neglected. I will also use this first paper, and its appendix (Appendix A), to informally introduce, and discuss, general topics in GMM and statistics, that are relevant to taxonomic applications. In the second part (B) of the work, I will move on to the main taxonomic analyses. Thus, I will show how to compare size and shape among groups, but I will also explore allometry and briefly examine differences in variance, as a potential clue to population bottlenecks in peripheral isolates. A large sample of North American marmot mandibles provides the example data (available online, for readers to replicate the study and practice with analyses). However, as this sample is larger than in previous studies and mostly unpublished, it also offers a chance to further explore the patterns of interspecific morphological variation in a group, that has been prominent in mammalian sociobiology, and whose evolutionary divergence is complex and only partially understood.
Taxonomic analysis of the genital plates and associated structures in Ophiuroidea (Echinodermata)
(2024)
Recently, new insights have been gained from the ophiuroid skeleton that were instrumental in the inference of a new phylogeny. The so far least studied ossicles are the adradial and abradial genital plates and the radial shields, which articulate with each other and support the genital slit and disc. In addition, the inner sides of the oral shields and madreporites have never been examined in detail. The present study utilized SEM, micro-CT and digital photography to document and examine these structures in 57 species from 28 of the currently accepted 34 families of Ophiuroidea. Early ontogeny and fossils were also considered. Previously, mainly the articular structures had been analysed, but the overall shape of the genital plates was here found to hold important phylogenetic signals. A long-neglected ossicle was re-discovered and studied in detail for the first time, here named the oral genital plate. It was recognized in all Ophintegrida, but was found to be absent in all Euryophiurida. The oral genital plate articulates with the oral shield and supports the proximal part of the genital slit wall. Abradial and oral genital plates were found to be absent in species that lack genital slits, but the adradial genital plate was always present. Numerous new morphological characters with potential phylogenetic signals were identified, described and figured in detail. A pre-existing character matrix was extended and revised with these new data, as well as with recently revised data on oral papillae, and a Bayesian phylogenetic analysis was performed. This phylogeny largely agrees with the current molecular hypothesis, but some branches were not supported.
Two new species, Habrocestum sahyadri sp. nov., and Irura shendurney sp. nov. are described from the Shendurney Wildlife Sanctuary, Kerala. The unknown female of Habrocestum kerala Asima, Caleb, Babu #38; Prasad, 2022 is described and three other species: Gelotia lanka Wijesinghe, 1991, Phintella accentifera (Simon, 1901) and Vailimia jharbari Basumatary, Caleb #38; Das, 2020 are recorded from the locality. Detailed descriptions, diagnosis and illustrations of the species are provided.
Dealing with potential stress in species that have high husbandry requirements, such as elephants, is a challenge for zoos. The objective of the present study was to determine whether positive reinforcement training (PRT) and exposure to a novel object (NOV) for enrichment induced a salivary cortisol response indicative of activation of the hypothalamic–pituitary–adrenal (HPA) axis and which factors determine individual variation in this regard in captive African elephants. We repeatedly sampled the saliva of ten animals (three zoos) for the analysis of cortisol (SACort) before and up to 60 min (in 10–15 min intervals) after the onset of PRT (three repeats) or NOV (nine repeats), which lasted 10 min. There was considerable individual variation in SACort in response to PRT or NOV. Using mixed models, we were able to control these and to reveal that PRT was associated with high SACort before and relatively low SACort after PRT, while NOV induced a moderate SACort increase. The individual differences in SACort were related to age and sex (NOV), while the effects of zoo, handling method (free vs. protected contact) and reproductive and social status were variable. We conclude that positive affective states, such as anticipation or arousal, should be taken into account when interpreting the differences in the SACort responses between PRT and NOV. In addition, understanding the individuality of stress will support management decisions aimed at promoting captive elephant welfare.
An update on the diversity and distribution of Caponiidae from Peru is presented. New distributional records for Caponina cajabamba Platnick, 1994 are given and the male is described for the first time. Additionally, three new species of the genus Nyetnops Platnick & Lise, 2007 are described: Nyetnops alexanderi Villarreal & Martínez sp. nov. (♂♀), Nyetnops madre Villarreal & Martínez sp. nov. (♂♀) and Nyetnops josei Villarreal & Martínez sp. nov. (♂). The taxonomic key proposed by Sánchez-Ruiz et al. (2020) for Nyetnops is updated to include all the described species as well as the new ones proposed herein. Maps showing the distribution of the records of Caponiidae species in Peru, mainly focused on the genus Nyetnops is included.
The chenopodium aphid, Hayhurstia atriplicis (Linnaeus, 1761) (Hemiptera: Aphididae), is reported for the first time in Colombia. The aphid was found on the aerial parts of the quinoa plant, Chenopodium quinoa Willd. (Amaranthaceae), especially on the leaves, in five municipalities in the department of Cauca, Colombia. Brief information on its natural enemies, distribution and biology is provided. This is the only aphid in Colombia known to cause malformations on the leaves of quinoa plants. In South America, this aphid has been found previously only in Ecuador, where it was reported for the first time in 2023 based on specimens collected from 2019 to 2021. However, we report that H. atriplicis was likely introduced to Ecuador in the 2000s or earlier, based on a collection dated 2006 found in the United States National Museum of Natural History.
ZooBank registration. urn:lsid:zoobank.org:pub:F43613E0-2854-44DE-9654-74138909717D
First record of the beekeeping pest Aethina tumida Murray (Coleoptera: Nitidulidae) for Honduras
(2024)
Aethina tumida Murray (Coleoptera: Nitidulidae) (also known as the small hive beetle), an important pest in apiaries, is reported from Honduras for the first time, new country record. The precise distribution in the country is unknown, and no damage related to it has been observed. Photographs are provided to aid in its identification. Differentiation of A. tumida from Aethina villosa Reitter and Aethina quadrata Sharp, which also occur in Honduras, is provided.
ZooBank registration. urn:lsid:zoobank.org:pub:DAF12C6A-0F8C-4151-9C4D-F191CCC4032F
Three species of false click beetles (Coleoptera: Eucnemidae) are added to the Nearctic fauna. One new species, Isorhipis bicolor, is described from a small series collected in Florida, U.S.A. Eighteen specimens collected from Georgia were identified as Dyscharachthis amplicollis (Fleutiaux), new U.S.A. records for a species previously taken from Japan and Southeast Asia. Examination of a series of eucnemids collected by Kyle Schnepp in Florida allowed me to revisit the Deltometopus fauna in eastern North America. Antennal structures present in a series of male specimens in the loan and past examined specimens are definitive enough to resurrect Deltometopus ereptus Bonvouloir, status restored, from synonymy with Deltometopus amoenicornis (Say). Species identification keys are provided for Deltometopus Bonvouloir and Isorhipis Boisduval and Lacordaire in the Nearctic region. Diagnostic differences are briefly noted for each of the three newly added species found in the United States. Images of three species and the related D. amoenicornis are provided.
ZooBank registration. urn:lsid:zoobank.org:pub:30F462F1-966F-4A4F-9D10-BF967AED6574
The review of the taxonomic status of Herpetoreas xenura species complex, based on morphological and molecular data, revealed a new species from Myanmar, which we describe as Herpetoreas davidi sp. nov. from the Rakhine Yoma Elephant Wildlife Sanctuary in Rakhine State. It is suggested to be a sister species to Herpetoreas pealii and Herpetoreas xenura sensu stricto, and can be separated from the latter species by a combination of morphological and scalation characters, and by its pattern. Another population from the Htamanthi Wildlife Sanctuary, Sagaing Region, was previously confused with H. xenura. However, as a closer examination of its morphology, shows it to be closer to Hebius khasiensis, we herein tentatively refer to this population as Hebius khasiensis, pending further molecular data confirming its taxonomic status. Consequently, we propose to temporarily remove Herpetoreas xenura from the fauna of Myanmar. Further studies, especially in the northwestern region of Myanmar, such as near border with India in Chin Hills and Naga Hills, are required. An updated key for the species of Herpetoreas is also provided.
The cosmopolitan pipunculid genus Dasydorylas Skevington, 2001 includes just a few species from the Neotropical Region and is completely unknown to Colombia. Three new species of Dasydorylas are described from protected areas and conflict territories of limited access in Colombia, namely Dasydorylas colombiensis sp. nov. (type locality: Santuario de Fauna y Flora Iguaque, Boyacá), D. gibber sp. nov. (type locality: Santuario de Fauna y Flora Iguaque, Boyacá), and D. santainesensis sp. nov. (type locality: Páramo de Santa Inés, Belmira, Antioquia). Diagnoses, illustrations and distributional data of the new species are presented. Dasydorylas nigellus (Rafael, 1991) is recorded for the first time from Colombia and its amended diagnosis is provided. An identification key to males of all Neotropical species is presented. With this paper, the number of Neotropical species of Dasydorylas is increased from six to nine.
Zebragryllus Desutter-Grandcolas & Cadena-Castañeda, 2014 is a Neotropical genus of field crickets that inhabits the leaf litter of the Amazon rainforest. The genus has six species and is characterized by the distinct ‘zebra’ pattern displayed by some of them. The species are recorded in French Guiana, Peru, and Colombia. Here, we describe two new species of the genus from the Brazilian Amazon rainforest, the first record of the genus for Brazil. We expand the records of Z. guianensis Desutter-Grandcolas, 2014 and Z. nouragui Desutter-Grandcolas, 2014 to Brazil. We also describe but do not name two females corresponding to two new species, provide an up-to-date key for species of Zebragryllus, and discuss the potential distribution for the genus.
Angel sharks (Squatina spp. Duméril, 1805) are a group of coastal benthic sharks distributed worldwide, currently including threatened and understudied species. Two species are formally described along the East Pacific coast, the California angel shark S. californica Ayres, 1859 and the Chilean angel shark S. armata (Philippi, 1887). The latter species occurs in the southeastern Pacific and has historically been understudied. Additionally, the original description of S. armata lacks sufficient data to confidently identify individuals of this species compared to modern descriptions, and no type specimen is currently available to ensure specimen identification. Detailed morphological descriptions for identifying species are an essential resource for solving taxonomic issues in groups of morphologically similar species and to promote the conservation of critically endangered species. Therefore, a neotype from the type locality is here designated for S. armata, and a detailed and standardized morphological characterization based on modern taxonomic works is provided. This work contributes in improving the knowledge on the Chilean angel shark taxonomy and provides an improved frame of reference for identifying angel sharks in the East Pacific, especially in areas where species may occur in sympatry.
Establishing management programs to preserve the benthic communities along the NW Pacific and the Arctic Ocean (AO) requires a deep understanding of the composition of communities and their responses to environmental stressors. In this study, we thus examine patterns of benthic community composition and patterns of species richness along the NW Pacific and Arctic Seas and investigate the most important environmental drivers of those patterns. Overall we found a trend of decreasing species richness toward higher latitudes and deeper waters, peaking in coastal waters of the eastern Philippines. The most dominant taxa along the entire study area were Arthropoda, Mollusca, Cnidaria, Echinodermata, and Annelida. We found that depth, not temperature, was the main driver of community composition along the NW Pacific and neighboring Arctic Seas. Depth has been previously suggested as a factor driving species distribution in benthic fauna. Following depth, the most influential environmental drivers of community composition along the NW Pacific and the Arctic Ocean were silicate, light, and currents. For example, silicate in Hexactinellida, Holothuroidea, and Ophiuroidea; and light in Cephalopoda and Gymnolaemata had the highest correlations with community composition. In this study, based on a combination of new samples and open-access data, we show that different benthic communities might respond differently to future climatic changes based on their taxon-specific biological, physiological, and ecological characteristics. International conservation efforts and habitat preservation should take an adaptive approach and apply measures that take the differences among benthic communities in responding to future climate change into account. This facilitates implementing appropriate conservation management strategies and sustainable utilization of the NW Pacific and Arctic marine ecosystems.
Diversity and distribution of intertidal Microporella (Bryozoa: Cheilostomatida) from California
(2024)
Seven species of the cheilostome bryozoan genus Microporella were identified across 15 rocky intertidal sites spanning 940 km of the California coast, from Mill Creek in the Montereyan Pacific Transition Region north to Point Saint George in the Mendocinian Region. Colonies of Microporella were found encrusting boulders and mollusc shells. Among these species, three are new to science, namely Microporella dentata Chowdhury & Di Martino sp. nov., M. pauciperforata Chowdhury & Di Martino sp. nov. and M. rota Chowdhury & Di Martino sp. nov. Three other species, M. californica, M. setiformis, and M. umbonata have previously been recorded from other localities in California. Finally, Microporella neocribroides, originally described from off Kodiak Island, Alaska, and subsequently found in Hokkaido, Japan, was recorded in California for the first time. An additional new species, M. similis Chowdhury & Di Martino sp. nov., was identified through the re-examination of museum material previously attributed to M. cribrosa and M. californica. These newly acquired data allowed for a more comprehensive examination of the distribution of species, intraspecific variability, and potential predator-induced teratologies in certain species, thanks to the availability of numerous colonies from various sites and the re-examination of museum records. Altogether, this study increases the known Recent diversity of Microporella in California’s waters to a total of 18 species.
Two new endemic genera of Therevinae are described from Madagascar. Rinhatiana gen. nov. contains three new species (R. arctifestuca gen. et sp. nov., R. cracentis gen. et sp. nov. and R. latifestuca gen. et sp. nov.) as well as R. distincta (Lyneborg, 1976) comb. nov., which is transferred from Stenopomyia Lyneborg, 1976. Tianarinha gen. nov. is described containing two new species, T. goodmani gen. et sp. nov. and T. micet gen. et sp. nov. All species are diagnosed and figured along with distribution data.
The cleptoparasitic bee genus Triepeolus Robertson, 1901 (Hymenoptera: Apidae) is revised for species occurring in South America. A total of nine species are confirmed from the continent, of which T. tuberculifer Onuferko, Rightmyer & Roig-Alsina sp. nov. is newly described. Four new synonymies are proposed: T. aguilari Moure, 1955 syn. nov. and T. megadelphus Cockerell, 1914 syn. nov. under T. buchwaldi (Friese, 1908); T. bilineatus Cockerell, 1949 syn. nov. under T. flavipennis (Friese, 1916); and Epeolus merus Brèthes, 1909 syn. nov. under T. nemoralis (Holmberg, 1886). Males of T. alvarengai Moure, 1955 and T. rufotegularis (Ashmead, 1900) and females of T. atoconganus Moure, 1955 and T. cecilyae Packer, 2016 are described for the first time. Lectotypes are designated for the following (all originally described under Epeolus Latreille, 1802 but now recognized as Triepeolus): E. buchwaldi, E. flavipennis, E. osiriformis Schrottky, 1910 and its junior synonym E. luteipes Friese, 1916, and E. rufotegularis. Diagnoses and complete descriptions/redescriptions are provided for all species, along with a fully illustrated dichotomous identification key (with Portuguese and Spanish versions available as supplementary material) to distinguish them based on external morphological features. Additionally, known collection records and information about the ecology of the treated species are presented.
Background: Genome sequencing of all known eukaryotes on Earth promises unprecedented advances in biological sciences and in biodiversity-related applied fields such as environmental management and natural product research. Advances in long-read DNA sequencing make it feasible to generate high-quality genomes for many non–genetic model species. However, long-read sequencing today relies on sizable quantities of high-quality, high molecular weight DNA, which is mostly obtained from fresh tissues. This is a challenge for biodiversity genomics of most metazoan species, which are tiny and need to be preserved immediately after collection. Here we present de novo genomes of 2 species of submillimeter Collembola. For each, we prepared the sequencing library from high molecular weight DNA extracted from a single specimen and using a novel ultra-low input protocol from Pacific Biosciences. This protocol requires a DNA input of only 5 ng, permitted by a whole-genome amplification step.
Results: The 2 assembled genomes have N50 values >5.5 and 8.5 Mb, respectively, and both contain ∼96% of BUSCO genes. Thus, they are highly contiguous and complete. The genomes are supported by an integrative taxonomy approach including placement in a genome-based phylogeny of Collembola and designation of a neotype for 1 of the species. Higher heterozygosity values are recorded in the more mobile species. Both species are devoid of the biosynthetic pathway for β-lactam antibiotics known in several Collembola, confirming the tight correlation of antibiotic synthesis with the species way of life.
Conclusions: It is now possible to generate high-quality genomes from single specimens of minute, field-preserved metazoans, exceeding the minimum contig N50 (1 Mb) required by the Earth BioGenome Project.
The use of integrative taxonomy has confirmed the existence of a new distinct crab species, cryptic, within the group of the former genus Liocarcinus, now Polybius, closely related to P. holsatus, P. vernalis and P. marmoreus. Previous reports have considered it to be the Atlantic form of P. vernalis, or as a species “affinis” or “comparable to” P. holsatus. Diagnostic morphological characters are presented for identification and the morphological variability in these species, mainly within P. vernalis (the most related) is analysed. Furthermore, based on molecular and other previous data, a new combination (genus change) is proposed. This new species, Polybius dioscurus sp. nov., lives on infralittoral sandy bottoms, coexisting with the other species mentioned, in the temperate and subtropical zone of the North Atlantic Ocean, including the Alboran Sea (westernmost Mediterranean).
Two new species of Strandesia Stuhlmann, 1888 are described from the northeastern part of Thailand: S. karanovicae sp. nov. and S. amnatcharoenensis sp. nov. Strandesia karanovicae is characterized by a tumid carapace in dorsal view, a small anterior overlap, the absence of a dorso-subapical seta on the first segment of the antennule (A1), a large aesthetasc Y on the antenna, an α seta shape with a needle-like tip and a large β seta on the mandibular palp (Md-palp), serrated bristles on the maxilla, a long h1 seta on the second thoracopod (T2) and a slender caudal ramus (CR). Strandesia amnatcharoenensis has a small compressed posterior part of the right valves (RV) which makes it closely related to S. pholpunthini Savatenalinton, 2015. The new species can be distinguished primarily by a considerably small anterior overlap of the left valve over the right valve (RV), a postero-ventral flange of the RV, a remarkably large claw Ga of the CR and the chaetotaxy of the limbs, especially A1, Md-palp and T2. In addition, in the present study, the sexual population of S. martensi Savatenalinton, 2015 is recorded for the first time, and thus the first description of the male is provided here. Moreover, the morphological examination of both males and females revealed differences between asexual and sexual females and also points to the fact that S. martensi is a mixed reproduction species. This is the first record of the mixed reproductive mode in the genus Strandesia or even in the Cypricercinae.
The snake pipefish, Entelurus aequoreus (Linnaeus, 1758), is a slender, up to 60 cm long, northern Atlantic fish that dwells in open seagrass habitats and has recently expanded its distribution range. The snake pipefish is part of the family Syngnathidae (seahorses and pipefish) that has undergone several characteristic morphological changes, such as loss of pelvic fins and elongated snout. Here, we present a highly contiguous, near chromosome-scale genome of the snake pipefish assembled as part of a university master’s course. The final assembly has a length of 1.6 Gbp in 7,391 scaffolds, a scaffold and contig N50 of 62.3 Mbp and 45.0 Mbp and L50 of 12 and 14, respectively. The largest 28 scaffolds (>21 Mbp) span 89.7% of the assembly length. A BUSCO completeness score of 94.1% and a mapping rate above 98% suggest a high assembly completeness. Repetitive elements cover 74.93% of the genome, one of the highest proportions so far identified in vertebrate genomes. Demographic modeling using the PSMC framework indicates a peak in effective population size (50 – 100 kya) during the last interglacial period and suggests that the species might largely benefit from warmer water conditions, as seen today. Our updated snake pipefish assembly forms an important foundation for further analysis of the morphological and molecular changes unique to the family Syngnathidae.
Highlights
• Genomes for all five Natrix species, two represented by two distinct subspecies each, were sequenced.
• Two genomes were de-novo assembled to their 1.7 Gb length with a contig N50 of 4.6 Mbp and 1.5 Mbp.
• Evidence for interspecific hybridization, both between allopatric and widely sympatric species.
• Fossil-calibrated molecular clock using genomes indicates that species are ancient several million-year-old lineages.
• Our findings imply that speciation took place despite continued gene flow.
Abstract
Understanding speciation is one of the cornerstones of biological diversity research. Currently, speciation is often understood as a continuous process of divergence that continues until genetic or other incompatibilities minimize or prevent interbreeding. The Palearctic snake genus Natrix is an ideal group to study speciation, as it comprises taxa representing distinct stages of the speciation process, ranging from widely interbreeding parapatric taxa through parapatric species with very limited gene flow in narrow hybrid zones to widely sympatric species. To understand the evolution of reproductive isolation through time, we have sequenced the genomes of all five species within this genus and two additional subspecies. We used both long-read and short-read methods to sequence and de-novo-assemble two high-quality genomes (Natrix h. helvetica, Natrix n. natrix) to their 1.7 Gb length with a contig N50 of 4.6 Mbp and 1.5 Mbp, respectively, and used these as references to assemble the remaining short-read-based genomes. Our phylogenomic analyses yielded a well-supported dated phylogeny and evidence for a surprisingly complex history of interspecific gene flow, including between widely sympatric species. Furthermore, evidence for gene flow was also found for currently allopatric species pairs. Genetic exchange among these well-defined, distinct, and several million-year-old reptile species emphasizes that speciation and maintenance of species distinctness can occur despite continued genetic exchange.
The genus Jambu gen. nov. is proposed based on two new species: Jambu paru gen. et sp. nov. and Jambu manoa gen. et sp. nov. Hapalopus butantan is transferred to Jambu; consequently, Jambu butantan gen. et comb. nov. is proposed. The geographic distribution of J. butantan is extended on the basis of new material collected. The new genus and the new species are here diagnosed, described and illustrated. The shape of the genitalia of Jambu resembles that of Hapalopini but differs from most of them by the presence of type IV urticating setae. The presence of this type of urticating setae allows us to hypothesize that this new genus is phylogenetically related with Grammostolini. Males of Jambu differ from those of other genera of Grammostolini by the presence of a paraembolic apophysis on the palpal bulb. Females also differ from those of other Grammostolini by the spermathecae morphology, with one medial lamp-shaped or heart-shaped receptacle. The homology of some features and the taxonomic placement of the new genus are discussed.
The ant genus Syscia Roger, 1861 is a cryptobiotic group of the subfamily Dorylinae. In this study, eight species of this genus from Asia are recognized, including two new species, Syscia arcodorsa sp. nov. and S. zhoui sp. nov., both described from Guangxi in China. In addition, Cerapachys guizhouensis Zhou, 2006 is redescribed and transferred to Syscia as S. guizhouensis (Zhou, 2006) comb. nov. The species Syscia typhla Roger, 1861 is removed from the ant fauna of China. Lastly, a key to species of Syscia from Asia based on the worker caste is presented.
Four new species of the jumping spider genus Stenaelurillus Simon, 1886 are described from India: Stenaelurillus feral Tripathi, Kuni & Kadam sp. nov. (♂, from the Eastern Coastline), S. naldurg Kuni, Kadam & Tripathi sp. nov. (♂♀, from the Deccan Plateau), S. judithbleisterae Kadam, Tripathi & Kuni sp. nov. (♂♀, from the Western Ghats) and S. solapur Kuni, Tripathi & Kadam sp. nov. (♂♀, from the Deccan Plateau). Detailed diagnoses, descriptions, illustrations, natural history and distribution map are provided. Additionally, new locality records for the other five species within the states are presented and mapped.
In this study, I describe two new species of Macrobiotus based on morphological data collected through light and scanning electron microscopy. Both species are accompanied by DNA sequences from four commonly used molecular markers (18S rDNA, 28S rDNA, ITS-2, and COI). Macrobiotus ovovittatus sp. nov. was discovered in Greenland and can be distinguished from similar taxa of Macrobiotus by its continuous, solid, and clearly wrinkled egg surface, adorned with sparse, very small and irregularly spaced pores. Additionally, the terminal discs of egg processes are covered in multiple light-refracting dots, resembling crocheted napkins. Macrobiotus mileri sp. nov. was found in Israel and is characterized by unique pore arrangements in its body cuticle, expressed in two distinct animal forms: (i) forma porata with large pores arranged in five distinct patches and (ii) forma aporata with single, almost undetectable pores. It also features weakly defined convex terminal discs with smooth edges. Furthermore, the phylogenetic analyses conducted in this study offer the most updated phylogeny of superclade I within the family Macrobiotidae. This facilitates additional discussion concerning the interrelationships among species within the genus Macrobiotus and the circumscription of species groups within it.
In the vast abyssal plains northwest of Iceland, white glass sponges of the genus Caulophacus Schulze, 1886 were inhabited by reddish Bythocaris G.O. Sars, 1870 shrimps and pinkish amphipods. After in situ observations at 3700 m depth, in -1°C waters by a remotely operated vehicle, members of this assemblage were collected and preserved for molecular studies. Based on integrative taxonomic analyses, the amphipods were identified as a new species of the genus Halirages Boeck, 1871 – Halirages spongiae sp. nov. Lörz, Nack & Tandberg –, as described in detail below. Part of our integrative approach was to establish reference DNA barcodes for known species of Halirages. However, our investigation of material of Calliopiidae G.O. Sars, 1895 collected around Iceland and Norway revealed slight morphological discrepancies in all the described species of Halirages. Except for Halirages fulvocinctus (M. Sars, 1858), none of the encountered specimens of Calliopiidae fully matched a current species description. We illuminate the morphological characteristics of nine operational taxonomic units, which also represented clades in COI and 28S. We set the Icelandic samples in the context of Halirages from Canada and Norway. A key to the world species of Halirages is provided.
Cicadellinae is a relatively large subfamily of leafhoppers (Hemiptera: Cicadellidae) with a cosmopolitan distribution with most genera known to occur in the Neotropics. Mexico houses nearly 16% of the total genera and most are endemic, inhabiting threatened native forests. Here, a new unusual Mexican genus, Christopherus gen. nov., is described to accommodate a new species of Cicadellini, C. mictlantecuhtli sp. nov., collected in the endangered Cloud Forest of Sierra Juárez, Oaxaca State of Mexico, based on dry-pinned museum specimen data. The new taxa can be separated from other Neotropical Cicadellini genera easily using male genitalia features: (i) pygofer without processes, (ii) segment 10th without processes, (iii) paraphysis absent, and (iv) edeagus with single basal atrial process elongate and asymmetrical. The monotypic genus Gillonella with its type species, G. ampulla Nielson & Godoy, 1995, are redescribed. A detailed extensive morphological description and discussion to distinguish the new genus from allied red-striped Neotropical genera in Mexico, Central America, and South America are given. Distributional data for new taxa within Mexican forests is also provided.
A re-analysis of the morphological phylogeny of the Nopinae is made, based on an update in the description of Aamunops Galán-Sánchez & Álvarez-Padilla, 2022 and the addition of the recently described genera Nopsma Sánchez-Ruiz, Brescovit & Bonaldo, 2020 and Roddemberryus Sánchez-Ruiz & Bonaldo, 2023. Two new species, Aamunops hoof sp. nov. (male) and Aamunops yiselae sp. nov. (male and female), are also described, which allows a better understanding of the genus morphology and resulted in an emended diagnosis. The description of Aamunops has been updated to include several characteristics of the ultrastructural morphology, legs, chelicerae, palps and female genitalia. The inclusion of these new characters of Aamunops along with those of Nopsma and Roddemberryus in the previous data matrix resulted in a new, completely different hypothesis of the relationships of the nopine genera: Nopsma is part of a group formed by Cubanops and Nyetnops, while Aamunops and Roddemberryus are grouped with representatives of Tarsonops. The four-eyed Nopsides ceralbonus Chamberlin, 1924 was recovered as the most basal species of Nopinae. The relationships among genera of Nopinae and the phylogenetic position of three species, whose taxonomic position is doubtful (Cubanops luquillo Sánchez-Ruiz, Brescovit & Alayón, 2015, Orthonops confuso Galán-Sánchez & Álvarez-Padilla, 2022 and Tarsonops irataylori Bond & Taylor, 2013), is also discussed.
We describe a new species of karst-dwelling pitviper from Chumphon Province of Peninsular Thailand, in the Isthmus of Kra, based on morphological and molecular data (2427 bp from cyt b, ND4 and 16S rRNA mitochondrial DNA genes). Morphologically, Trimeresurus kraensis sp. nov. is distinguished from other congeners by the following combination of morphological characters: a dark/bottle-green dorsum with reddish-brown or purple crossbands; pale green venter lacking dark dots; stripes present on the lateral sides of the ventrals; internasals generally in contact; one large supraocular scale on each side of the head; iris pale copper; tail brown with dark purplish-brown crossbars; dorsal scales in 21–21–15 rows; ventral scales 167 in a single male, 169–171 in females; subcaudal scales 62 in a single male, 52–54 in females, all paired. White vertebral spots present in males, located on approximately every two or four dorsal scales; dark brown spots forming discontinuous pattern present on 1–3 lateral dorsal scale rows; males with reddish-brown postocular stripe with jagged edges. The new species differs from the morphologically similar species Trimeresurus venustus s. str. by a notable divergence in cytochrome b mitochondrial DNA gene sequences (p = 5.9%).
The beetle genus Pharaxonotha Reitter (Coleoptera: Erotylidae: Pharaxonothinae) is found in the cones of cycad genera in the New World, including species of Ceratozamia Brongn., Dioon Lindl., Microcycas (Miq.) A.DC and Zamia L. Its presence and diversity are analyzed for the 17 species of Zamia known to occur in Panama. Nine species are recognized, and five new species are described: Pharaxonotha clarkorum Pakaluk, P. confusa Pakaluk, P. fortunensis Tang, Skelley and Taylor new species, P. holzmani Tang, Skelley and Taylor new species, P. kirschii Reitter, P. manicatae Tang, Skelley and Taylor new species, P. panamensis Tang, Skelley and Taylor new species, P. pseudoparasitica Tang, Skelley and Taylor new species, and P. taylori Skelley and Tang. A key to species of Pharaxonotha in Panama is presented.
ZooBank registration. urn:lsid:zoobank.org:pub:C054B0D4-FD00-4AE7-BBA7-C75A12368561
A new species, Chlorocoris charluzae Thomas (Hemiptera: Heteroptera: Pentatomidae), is described from Panama. Eludocoris grandis Thomas is reported from Panama for the first time. The distribution of Chlorocoris rufispinus Dallas to include Panama is confirmed. Arawacoris Thomas, described as a subgenus of Chlorocoris Spinola, is elevated to full genus.
ZooBank registration. urn:lsid:zoobank.org:pub:F4E45B6C-5BD8-4B3E-B599-3BB61855B392
Pears, Pyrus pyrifolia (Burm.f.) Nak. (Rosaceae) are one of the most widely grown fruit trees in South Korea. Approximately 11% of the total pear production in 2022 was exported to countries such as the US and Vietnam. Exported pears must be free of pest species that are considered of quarantine importance by the importing countries. Herein, a list of scale insects (Hemiptera: Coccomorpha) associated with pear trees is updated. Additionally, Spilococcus pacificus (Borchsenius) is added to the list of mealybugs affecting pears in South Korea and is briefly diagnosed based on non-type specimens and illustrated using photographs. Information on its distribution and plant hosts are also provided.
ZooBank registration. urn:lsid:zoobank.org:pub:48A93063-EB78-402F-82CE-168540C90FE2
Pseudococcus longispinus (Targioni-Tozzetti) (Hemiptera: Pseudococcidae) is a widely-distributed pest that feeds on many economically important hosts, particularly tropical fruits and ornamentals. The potential distribution of this mealybug pest in South Korea remains a primary concern because of its high incidence of interceptions screened during inspection. Hence, this species prompted a modelling effort to assess its potential risk of introduction. Potential risk maps were developed for this pest with a CLIMEX model based on occurrence records under environmental data. The potential distribution of these pests in South Korea in the 2020s, 2050s and 2090s was projected based on the RCP 8.5 climate change scenario. Results showed that P. longispinus has little potential for invasion in the outdoor environment of South Korea due to high cold stress in the 2020s. However, some locations in Jejudo were predicted to be marginally suitable under future climate factors. In that respect, the results of this model prediction could be used to prepare a risk-based surveying program that improves the probability of detecting early P. longispinus populations.
ZooBank registration. urn:lsid:zoobank.org:pub:9E0CBFE6-E1AA-4B55-9E58-70B170E0FBD8
An overview of the genus Psephenops Grouvelle (Coleoptera: Psephenidae: Psepheninae) is provided with geographic distributions of the species. The taxonomic history of Psephenops smithi Grouvelle, the type species from Grenada and St. Vincent, and junior synonym Xexanchorinus latus Grouvelle from Grenada, is discussed, and lectotypes and paralectotypes are designated for both. Photographs of the type series and a non-type specimen with illustrated male genitalia, along with new distributional information for the species, are provided. The male, female, and associated larva of Psephenops trini Barr and Shepard, new species, are described and illustrated, as is the habitat of this species in Trinidad and Tobago. The Peruvian species Psephenus robacki Spangler is transferred from Psephenus Haldeman to Psephenops as Psephenops robacki (Spangler) new combination. Photographs of the female holotype are included, and possible new distributional records from Peru are reported.
ZooBank registration. urn:lsid:zoobank.org:pub:5C9ECB63-6A77-4FF6-8391-BF0F77BE5674
U.S. port of entry interception data revealed that Frankliniella Karny (Thysanoptera: Thripidae) was the most frequently intercepted genus of Thripidae. No published identification resource for intercepted Frankliniella is available to USDA port of entry entomology identifiers. A morphological review of intercepted species was conducted. A dichotomous key for the identification of intercepted slide mounted adult females was created. Morphological diagnosis, description of each species with their geographic region(s) of origin and frequency of interception is provided.
ZooBank registration. urn:lsid:zoobank.org:pub:403B362E-9A7F-4385-A0F1-9DB87FE09AD2
Members of the genus Centris Fabricius (Hymenoptera: Apoidea: Anthophila) constitute a significant component of the Neotropical (including insular) bee fauna, exhibiting high species richness, a moderate to large body size, and extensive interactions with various important plant groups. Females of most species possess specialized morphology adapted for collecting oils from flowers. This study documents the presence of the genus in Cuba, recognizing six species: C. aethiops Cresson, C. cornuta Cresson, C. fulviventris Cresson, C. poecila Lepeletier, C. taina Genaro and Breto new species, and C. tarsata F. Smith. Detailed information is provided for each species, encompassing a diagnosis, natural history, floral associations, seasonal occurrence, and distribution. Centris taina new species is described from Cuba, based on both sexes, which were previously misidentified as C. versicolor (Fabr.) for females and C. fasciatus F. Smith for males due to sexual dimorphism. Centris tarsata is reported as a new national record for Cuba, possibly introduced by humans from South America and now established and widely distributed across the entire island. A key to differentiate the Cuban species of Centris is presented.
ZooBank registration. urn:lsid:zoobank.org:pub:257916DF-2129-4694-876C-49C858046BF6
The subgenus Indonthophagus Kabakov, 2006 of Onthophagus Latreille, 1802 (Coleoptera: Scarabaeidae: Scarabaeinae: Onthophagini) is reviewed. A morphological definition of it is provided. A diagnosis, based both on external and internal characters, of the seven species deemed to belong to the group according to literature, is supplied. As a result, Onthophagus spinifex (Fabricius, 1781), previously placed with some uncertainty in the subgenus, is definitively excluded. A key to Indonthophagus species is also provided, as well as images of male, aedeagus and endophallus for each species. New country records of Onthophagus turbatus Walker, 1858 for Pakistan, Nepal and Bhutan are given.
ZooBank registration. urn:lsid:zoobank.org:pub:9D0CE9F2-35CF-449D-8984-1B4C722762F7
Mollusca is the second-largest animal phylum with over 100,000 species among eight distinct taxonomic classes. Across 1000 living species in the class Polyplacophora, chitons have a relatively constrained morphology but with some notable deviations. Several genera possess “shell eyes”, true eyes with a lens and retina that are embedded within the dorsal shells, which represent the most recent evolution of animal eyes. The phylogeny of major chiton clades is mostly well established, in a set of superfamily and higher-level taxa supported by various approaches including multiple gene markers, mitogenome-phylogeny and phylotranscritomic approaches as well as morphological studies. However, one critical lineage has remained unclear: Schizochiton was controversially suggested as a potential independent origin of chiton shell eyes. Here, with the draft genome sequencing of Schizochiton incisus (superfamily Schizochitonoidea) plus assembly of transcriptome data from other polyplacophorans, we present phylogenetic reconstructions using both mitochondrial genomes and phylogenomic approaches with multiple methods. Phylogenetic trees from mitogenomic data are inconsistent, reflecting larger scale confounding factors in molluscan mitogenomes. A consistent robust topology was generated with protein coding genes using different models and methods. Our results support Schizochitonoidea is a sister group to other Chitonoidea in Chitonina, in agreement with established classification. This suggests that the earliest origin of shell eyes is in Schizochitonoidea, which were also gained secondarily in other genera in Chitonoidea. Our results have generated a holistic review of the internal relationship within Polyplacophora, and a better understanding on the evolution of Polyplacophora.
Two new species of aulacid wasps, Pristaulacus iuliae Turrisi & Nobile sp. nov. from South India (Karnataka) and Pristaulacus ninae sp. nov. from Peninsular Malaysia (Pahang), are described, figured and compared with most related species. Based on the present addition, the Indomalayan area currently includes 27 species of Pristaulacus Kieffer out of 61 known from the whole Oriental Region, which is however a largely underestimated number. An identification key to species and an updated checklist of Pristaulacus occurring in the Indomalayan area are provided.
The enigmatic ‘y-larvae’ (Thecostraca: Facetotecta) are microscopic marine planktonic crustaceans that were discovered more than a century ago, yet to this day their adults remain unknown. Despite occurring locally in large diversities, and therefore presumably being of ecological importance, only 17 species have been described globally, rendering it practically impossible to identify any y-larval specimen from any locality. The fact that species have been based on different life stages (nauplii and/or cyprids) further hampers identification. Y-larvae include many forms with planktotrophic (feeding) nauplii and even more with lecithotrophic (non-feeding) nauplii. At one coral-reef locality on the shore of Sesoko Island (Okinawa, Japan), extensive fieldwork in 2018 and 2019 confirmed an enormous taxonomic diversity of y-larvae there. Here, we present morphological diagnoses and an identification key for 34 lecithotrophic y-naupliar types (or morphospecies), which will correspond minimally to the same number of species when described. As a temporary measure, all are referred to by alphabetical parataxonomic designations, except for three that have been formally described already within the genus Hansenocaris Itô, 1985. To this should be added an additional 7–9 planktotrophic y-naupliar morphospecies, which are only treated briefly. Most often, y-larval taxonomy has been based on the cyprid stage, but the large morphological diversity of y-nauplii suggests that nauplii are at least as important for taxonomy. Lecithotrophic y-nauplii display a multitude of body shapes, the form-evolution of which is discussed here with reference to a recent molecular phylogeny of Facetotecta partly based on material from the same site. An indirect estimate of the relative abundances of all 34 lecithotrophic y-naupliar morphospecies is presented, based on laboratory-reared final-instar specimens. This treatment is intended as a step towards a proper taxonomy and a revised classification of Facetotecta, which will involve detailed descriptions of both nauplii and cyprids. Until such work progresses, the present overview of the y-naupliar fauna of a single Okinawan locality known to be a hotspot of y-larval diversity is offered as a baseline for further surveys of Facetotecta elsewhere in the Indo-West Pacific and beyond.
The taxa of the subgenus Turritus of Cochlostoma (Cochlostomatidae) are analysed based on molecular and morphological data. The phylogenetic trees, based on ribosomal (16S) and nuclear (H3) DNA, indicate that the currently accepted taxonomy should be revised. Based on our data, there are 37 species in Turritus of which 5 are new to science: Cochlostoma (Turritus) pallgergelyi sp. nov., C. (T. ) muranyii sp. nov., C. (T. ) hallgassi sp. nov., C. (T. ) kontschani sp. nov. and C. (T. ) lacazei sp. nov. Of these, we describe the shells and the female genitalia and summarize the distributional data. Some samples (or set of samples) will remain undetermined for lack of data and these are reported in the appendix.
Though recent investigations have contributed substantially to our understanding of the Alpine-Dinaric radiation of the genus Zospeum Bourguignat, 1856, its southernmost member, Zospeum troglobalcanicum Absolon, 1916, has remained a taxonomic ghost. The assumed absence of type material, the insufficient original description, and the lack of new samples from its Western Balkan type locality have stymied further clarification. The recent discovery of a single syntype shell housed at the Natural History Museum Vienna now enables the first morphological assessment via 3D X-ray and SEM imaging. Based on this image data, different characters for assessing the southernmost members of the genus are determined and a lectotype is designated. Eleven allied species from 15 Western Balkan populations are described from museum material and recent sampling efforts: Z. amplioscutum Jochum & Ruthensteiner sp. nov., Z. biokovoense Jochum & Ruthensteiner sp. nov., Z. constrictum Jochum & Ruthensteiner sp. nov., Z. dubokidoense Jochum & Ruthensteiner sp. nov., Z. intermedium Jochum & Ruthensteiner sp. nov., Z. kolbae Jochum, Inäbnit, Kneubühler & Ruthensteiner sp. nov., Z. neuberti Jochum & Ruthensteiner sp. nov., Z. njegusiense Jochum & Ruthensteiner sp. nov., Z. njunjicae Jochum, Schilthuizen & Ruthensteiner sp. nov., Z. tortuosum Jochum & Ruthensteiner sp. nov. and Z. tumidum Jochum, Schilthuizen & Ruthensteiner sp. nov. One species, Z. kolbae, is described using DNA sequence data and one species, Z. simplex Inäbnit, Jochum & Neubert, 2021 for which DNA sequence data is already available, is supported by morphological data presented in this study. The DNA sequence dataset (COI, 16S and H3) is included here and implemented in the most recent phylogenetic reconstruction of the genus. A translation of Karel Absolon’s notes from the Balkan scientific expeditions is provided.
A taxonomic revision of the oil-collecting bees of the subgenus Epicharis (Epicharitides) Moure, 1945 is provided. A total of nine species were recognized: E. cockerelli Friese, 1900; E. duckei Friese, 1901; E. iheringi Friese, 1899; E. luteocincta Moure & Seabra, 1959; E. minima (Friese, 1904); E. obscura Friese, 1899, and E. rufescens Moure & Seabra, 1959, along with E. mesoamericana sp. nov. and E. lia sp. nov., two new species from the Central American and Amazonian provinces, respectively. Redescriptions, diagnoses, and figures of specimens of both sexes, floral records, distribution maps, an identification key, and an updated catalogue of all species of the group are also provided. In addition, the lectotype of E. duckei was also designated to stabilize the application of the name.