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Algae as primary producers are highly important in aquatic ecosystems and provide a variety of environmental and anthropogenic services. In small lotic ecosystems in agriculturally influenced landscapes, algae are often the main constituent of the base of the food web and they contribute considerably to biodiversity. Within these small lotic ecosystems, algae are influenced by both natural stressors, such as flow regime and dry-out events, and anthropogenic factors. Agricultural practices especially influence algal communities by introducing plant protection products (PPP) and fertilizers into the water. The impacts of these exposures and how they affect planktonic algae in particular are not yet well studied in small lotic ecosystems. However, the protection of algae as primary producers is of high relevance and was thus included in official biomonitoring programs such as the European Water Framework Directive (WFD) or in risk assessment of e.g. PPPs. Hence, this thesis addresses this knowledge gap and links new information on algal communities in small lotic ecosystems with biomonitoring and risk assessment.
Data was gathered from small ditches and streams in central Germany as well as from laboratory algal assays. A technique to rapidly classify and quantify planktonic and benthic algae based on their photopigment concentration (measured via delayed fluorescence - DF) in ecological and ecotoxicological studies was assessed, both in the laboratory and in the field. This research provides insight into planktonic and benthic algal communities in small streams and ditches in order to improve management and protection strategies in the face of increased agricultural chemical input. ...
Expression, perception and recognition of intense emotions in healthy and depressed individuals
(2017)
Die Fähigkeit die Gefühle anderer zu erkennen und einzuordnen ermöglicht es soziale Situationen richtig einzuschätzen und soziale Beziehungen aufzubauen. Da Emotionen also in unserem Leben eine wichtige Rolle spielen, kann eine Dysregulation der Emotionsverarbeitung auch zu elementaren Einschränkungen führen. Menschen, die unter depressiven Episoden leiden, durchleben beispielsweise regelmäßig Phasen intensiver und anhaltender Traurigkeit. Jedoch ist noch nicht vollständig erklärt, wie es zu dieser verzerrten Emotionswahrnehmung kommt. Diese Dissertation hatte deshalb das Ziel, den Ausdruck, die Wahrnehmung und das Erkennen extremer Emotionen genauer zu beleuchten.
In Studie 1 wurden der Ausdruck und das Erkennen extremer Emotionen untersucht.
Hierbei dienten aus dem Internet bezogene Videosequenzen von Kindern und Erwachsenen als Basis, in denen diese sich in Situationen befanden, die sie extrem negative oder extrem positive Emotionen durchleben ließen. Die Gesichtsausdrücke der Kinder und Erwachsenen wurden dann zum Zeitpunkt der stärksten emotionalen Erregung in ein Bild umgewandelt und von unabhängigen Ratern auf ihre Valenz und ihr Arousal eingeschätzt. Es wurde beobachtet, dass - entgegen der Vorhersage etablierter Emotionstheorien (z.B. Ekman, 1993) – Emotionen hoher positiver und negativer Intensität schwer auseinander zu halten sind. Tatsächlich wurden positive Emotionsausdrücke häufig als negativ eingeschätzt. Eine mögliche Erklärung dafür liefern Aragón und Kollegen (2015). Sie schätzen den Ausdruck negativer Emotionen in positiven Situationen als Emotionsregulationsstrategie ein, die dazu dient ein emotionales Equilibrium wieder herzustellen, das durch die überwältigenden positiven Emotionen aus dem Gleichgewicht gebracht wurde.
In Studie 2 und 3 wurde die Wahrnehmung negativer Emotionen bei depressiven Menschen im Vergleich zu gesunden Kontrollprobanden auf subjektiver und physiologischer Ebene untersucht. Hierbei wurde zunächst im Rahmen von Studie 2 untersucht, ob Parameter des autonomen Nervensystems (ANS) sich zwischen depressiven und gesunden Probanden unterscheiden. ANS-Parameter umfassten Hormone (Cortisol und DHEA), Herzratenvariabilität (HRV), Hautleitfähigkeit (GSR), Hauttemperatur (TEMP) und Atemfrequenz (RSP). Es konnten erhöhte DHEA-Werte, eine erhöhte Hauttemperatur und eine reduzierte Atemfrequenz in der Patientengruppe gefunden werden. Eine erhöhte Hauttemperatur korrelierte zudem mit der Ausprägung depressiver Symptome und der aktuellen Stimmung. Reduzierte HRV-Werte wurden hauptsächlich auf antidepressive Medikation zurückgeführt.
In Studie 3 wurde dann die Reaktion der Probanden auf emotionsevozierende Stimuli verschiedener Valenzkategorien (neutral, leicht negative, hoch negative) untersucht. Hierbei wurden sowohl physiologische Parameter (TEMP, HRV, GSR, RSP) als auch die subjektive Einschätzung der Stimuli bezüglich ihrer Valenz und ihres Arousal erhoben. Die Befunde bezüglich Hauttemperatur und HRV-Werte aus Studie 2 konnten in Studie 3 repliziert
werden. Zudem zeigte sich eine akzentuierte Reaktion der RSP sowie höhere Valenz- und Arousalratings in der Patientengruppe. Das subjektiv intensivere Empfinden der Stimuli bei den Patienten hing zusätzlich mit emotionaler und sozialer Kompetenz zusammen.
In dieser Dissertation konnte gezeigt werden, dass Ausdrücke intensiver Emotionen im Gesicht oft als zweideutig wahrgenommen werden. Um ein genaueres Verständnis der Emotionswahrnehmung bei depressiven Menschen zu erlangen, konnten zudem mehrere Parameter des ANS identifiziert werden, die teils noch nicht untersucht wurden und einer intensiveren Emotionswahrnehmung bei depressiven Patienten zugrunde liegen könnten.
Hierbei wurden zusätzlich Zusammenhänge zu weiteren Aspekten der Depression, wie Defiziten in sozialen Kompetenzen, aufgezeigt. Damit gibt diese Dissertation umfassende Aufschlüsse über Emotionsverarbeitungsprozesse bei gesunden und depressiven Menschen.
Biophysical studies of the translation-regulating add adenine riboswitch from Vibrio vulnificus
(2017)
Bacterial gene expression can be regulated at mRNA level by cis-acting mRNA elements termed riboswitches. Riboswitches operate by conformational switching between a ligand-free and a ligand-bound state with different structures that either activate or inhibit gene expression. This PhD thesis contributes to the molecular level understanding of full-length purine riboswitches. It presents biophysical investigations on the ligand-dependent folding of the full-length translation-regulating add adenine riboswitch from the gram-negative human pathogenic marine bacterium Vibrio vulnificus (Asw). Asw has the typical bipartite riboswitch architecture with a 5’ ligand-sensing aptamer domain and a 3’ regulatory domain termed expression platform. According to the working hypothesis, Asw employs a unique thermodynamically-controlled 3-state conformational switching mechanism between an apoB, an apoA and a holo conformation to regulate translation initiation in a temperature-compensated manner. The two apo conformations are the putative translation-OFF states and the holo conformation is the putative translation-ON state of Asw. In the main project of this PhD thesis, an integrated nuclear magnetic resonance (NMR) and smFRET spectroscopic study of the full-length 112-nucleotide Asw (112Asw) was performed. The adenine-dependent folding of 112Asw was monitored at the level of base pairing interactions by NMR of the RNA imino protons, and at the level of three long-range intramolecular distances by smFRET of immobilized molecules. The integrated NMR and smFRET spectroscopic study of 112Asw yielded two major findings. First, NMR and smFRET both revealed that adenine binding to 112Asw impedes apoB formation by stabilizing the apoA secondary structure in the holo conformation without modulating tertiary structural interactions between the two riboswitch domains. This highlights the central role of competitive P1 and P4 helix formation at the interface of the aptamer and the expression platform for switching the accessibility of the ribosome binding site of 112Asw. Moreover, it strongly corroborates the hypothesis that purine riboswitches in general operate according to the key principle of a spatially decoupled secondary structural allosteric switch that proceeds without ligand-induced tertiary structural interactions between the aptamer domain and the expression platform. Second, it was uncovered by smFRET that the apoA and the holo conformation of 112Asw do not adopt a single folding state at near-physiological Mg2+ concentration. Instead, apoA and holo exhibit a persistent dynamic equilibrium between substates with an undocked (U), a short-lived docked (D1; ~s) and a Mg2+-bound long-lived docked (D2; ~10 s) aptamer kissing loop motif. In the holo conformation, the fractional population of the long-lived docked substate is ~2-fold increased compared to the apoA conformation, but undocked and docked substates are still comparably stable. The here described multiple folding states of the apoA and the holo conformation might have regulatory properties that are in between the apoB translation-OFF state and the holo-D2 translation-ON state. Additonally, an integrated NMR and smFRET analysis of 127-nucleotide Asw (127Asw) is presented. Compared to 112Asw, 127Asw is 3’-elongated by 15 nucleotides of the adenosine deaminase encoding sequence of the add gene from Vibrio vulnificus. 127Asw was chosen as mRNA template for future investigations of the interaction between Asw and the 30S ribosomal subunit. The NMR spectra of 127Asw demonstrated that 127Asw has the same overall secondary structure as 112Asw. Like for 112Asw, the combined NMR and smFRET analysis of 127Asw showed that adenine binding impedes apoB formation and stabilizes a long-lived docked aptamer kissing loop fold. However, compared to 112Asw, 127Asw has a destabilized aptamer kissing loop motif and a stabilized P4 helix in the expression platform. Finally, ligand-observed studies of the transient encounter complex between Asw and the near-cognate ligand hypoxanthine are described. By competition binding WaterLOGSY NMR experiments with hypoxanthine and the adenine analogue 2,6-diaminopurine, it could be shown that hypoxanthine binds to the same binding site of 112Asw as the cognate ligand adenine. The hypoxanthine binding constant measured with the WaterLOGSY method is in the low mM range (1.8 mM) and substantially exceeds the physiological hypoxanthine concentration in E. coli (~0.3 mM), thus ruling out that hypoxanthine binding can significantly impact the translational regulation of Asw in vivo. Also, preliminary FTIR difference spectra of 13C,15N-labelled and unlabelled hypoxanthine in complex with the pbuE adenine riboswitch aptamer and the xpt guanine riboswitch aptamer are discussed. These spectra showed a pattern of multiple IR bands that appeared to be characteristic for the respective complex.
This dissertation provides a comprehensive account of the grammar of relative clause extraposition in English. Based on a systematic review and evaluation of the empirical generalizations and theoretical approaches provided in the literature on generative grammar, it is shown that none of the previous theories is able to account for all the relevant facts. Among the most problematic data are the Principle C and scope effects of relative clause extraposition, cases with obligatory relative clauses, and relative clauses with elliptical NPs as antecedents.
I propose a new analysis of relative clause extraposition within the constraint-based, monostratal grammatical framework of Head-driven Phrase Structure Grammar (HPSG), enhanced with the semantic theory of Lexical Resource Semantics (LRS). Crucially, it is a general analysis of relative clause attachment, since both canonical and extraposed relative clauses are licensed by the same syntactic and semantic constraints. The basic assumption is that a relative clause can be adjoined to any phrase that contains a suitable antecedent of the relative pronoun. The semantic information that licenses the relative clause is introduced by the determiner of the antecedent NP. The techniques of underspecified semantics and the standard semantic representation language used by LRS make it possible to formulate constraints which yield the correct intersective interpretation of the relative clause (arbitrarily distant from its antecedent NP) and at the same time link the scope of the antecedent NP to the adjunction site of the relative clause.
In combination with the revised HPSG binding theory developed in this dissertation, the proposed analysis is able to capture the major properties of relative clause attachment within a unified and internally consistent monostratal constraint-based grammatical framework.
Multicellular organisms require that cells adhere to each other. This cell-cell adhesion is indispensable for the formation and the integrity of epithelial structures, tissues and organs. Mammals have developed four different cell-cell adhesion structures, the adhering junctions, which ensure the tight contact between cells but are also important platforms for communication and exchange in tissues. Two of these adhering junctions are cadherin based, the belt-like adherens junctions and the spot-like desmosomes. Both structures have in common that they are composed of single membrane spanning proteins, the cadherins, which accomplish adhesion in a calcium-dependent manner. The intracellular parts of classical as well as desmosomal cadherins bind to different adaptor proteins of the armadillo-protein family and others which build a protein plaque underneath the membrane and link the cadherins to the actin or intermediate filament cytoskeleton.
Desmosomes are of special importance for tissues that have to withstand mechanical stress. Although they are essential to stabilize tissues they have to be highly flexible and dynamic structures, as processes like wound healing or tissue remodeling require that adhesive interactions can be modulated. The molecular dynamics within desmosomes are not jet understood in detail, but it is assumed that two different membrane associated pools of desmosomal cadherins exist in cells. Cadherins that are incorporated in mature desmosomes are part of the junctional pool, whereas cadherins that are not associated with firm desmosomes and the intermediate filament cytoskeleton belong to the non-junctional pool. Lateral movements between the two pools results in a dynamic equilibrium and allows for example the exchange of old cadherins. Little is known about the breakdown of desmosomal cadherins. Several studies found that desmosome assembly or endocytosis are cholesterol dependent processes and claimed that membrane microdomains play a role in the regulation of desmosome dynamics. Moreover, membrane rafts may be involved in the pathomechanism of the desmosome associated disease pemphigus, were autoantibodies bind to the cadherin desmoglein-3 and trigger its internalization which results in a loss of adhesion in skin cells.
Membrane rafts are cholesterol dependent nanoscale structures of cellular membranes that are able to regulate the distribution of proteins within the plasma membrane and thus form platforms for cell signaling and membrane trafficking. Flotillins are proteins that are associated with membrane rafts and are reported to be involved in processes like endocytosis, endosomal sorting and a multitude of different signaling events. We could recently show that the membrane raft associated proteins flotillin-1 and flotillin-2 bind directly to the armadillo protein y-catenin which can be part of both, the adherens junction and the desmosome. The aim of this study was to eluciadate a possible role of flotillins in the regulation of desmosomes.
HaCaT keratinocytes were chosen as the main cell system for this study and at first the association of desmosomal components with flotillins was analyzed in detail. It was found that flotillins are clearly associated with desmosomal proteins. They colocalize with desmoglein-3 at cell borders and precipitate the other desmogleins. Further binding assays revealed that both flotillins bind to all desmogleins and the long isoforms of the second class of desmosomal cadherins, the desmocollins. The interaction is a direct one and was mapped to the ICS sequence within the cadherins. This close association rendered the question whether flotillins are functionally implicated in desmosome regulation. To address this issue, stable flotillin knockdown HaCaT cells were analyzed in detail. The molecular morphology of desmoglein-3, desmoglein-1 and two plaque proteins was clearly altered in the absence of flotillins. The membrane staining of all tested desmosomal proteins was derailed and disordered. Furthermoore, the loss of flotillins had an impact on the adhesive capacity of HaCaT keratinocytes. The cell-cell adhesion was weakened in the absence of flotillins, which was monitored by an increased fragmentation of knockdown cells in a cell dissociation assay.
In order to find out the mechanism by which flotillins influence the membrane morphology and the adhesiveness in keratinocytes, the association of desmosomal proteins with membrane microdomains was examined, at first. A predominant part of desmoglein-3 is associated with membrane rafts in HaCaT keratinocytes, whereas only a minor part of desmoglein-1 is found there. However, the raft-association of none of the examined proteins was altered in the absence of flotillins. Furthermore, flotillin depletion did not change the distribution of desmogleins with the two different cadherin pools. Less desmoglein-3 is found in the junctional pool of the flotillin depleted cells compared to the control cells, but this is due to an overall diminished desmoglein-3 protein level in these cells.
Flotillins are involved in endocytic processes but their exact role there is under debate. The endocytic uptake of desmosomal cadherins requires intact membrane rafts, but the precise mechanism is still unknown. A possible involvement of flotillins on the endocytosis of desmoglein-3 was addressed next. It is known that the internalization of desmoglein-2 is dependent on the GTPase dynamin, arguing for an involvement of dynamin in the endocytosis of desmoglein-3 as well. When dynamin and thus desmoglein-3 endocytosis was inhibited using chemical compounds, the mislocalization of desmoglein-3 that was observed in flotillin knockdown cells was restored. This suggest that inhibition of desmoglein-3 endocytosis enhances the amount and/or availability of desmoglein-3 at the plasma membrane, which then normalizes the morphological alterations caused by a knockdown of flotillins. Furthermore the morphological alterations in the flotillin knockdown HaCaT cells were found to be similar to the localization of desmoglein-3 that was observed upon treatment of keratinocytes with PV IgG These structures have been described before as linear arrays and are assumed to be sites of endocytic uptake. This strengthens the idea that enhanced desmoglein-3 internalization takes place in the absence of flotillins, which then results in a weakened adhesion.
Altogether this study revealed flotillins as novel players in desmosome mediated cell-cell adhesion processes. By binding to desmosomal cadherins and desmosomal plaque proteins, flotillins stabilize desmosomes at the plasma membrane and are required for a proper cell-cell adhesion.
Mathematische Basiskompetenzen gelten als wichtiger Prädiktor für die schulische Mathematikleistung. Ebenso offenbaren Studien eine prädiktive Wirkung des selbstregulierten Lernens auf die akademische Leistung. Die Ergebnisse mehrerer Studien zeigen, dass Kinder mit Migrationshintergrund im deutschen Schulsystem schlechter abschneiden. Schon in der Grundschule weisen diese Kinder im Fach Mathematik schlechtere Leistungen auf als ihre Mitschüler[innen] ohne Migrationshintergrund. Vermutlich kann dieser Umstand mit schlechteren Ausgangsbedingungen im mathematischen Vorwissen begründet werden. Darüber hinaus spielen auch mangelnde Sprachfähigkeiten in der Unterrichtssprache eine wichtige Rolle. Daher sollten die fehlenden Kompetenzen im Anfangsunterricht entwicklungsorientiert aufgebaut werden. Zusätzlich sollten auch Methoden zum selbstregulierten Lernen frühzeitig vermittelt werden, da diese Fähigkeit die Übertragung fachlicher Förderungen auf weiterführende Inhalte erleichtert und eine Voraussetzung für die gelingende Umsetzung verschiedener Unterrichtsmethoden darstellt. In der Praxis werden entsprechende Konzepte bislang allerdings nur vereinzelt umgesetzt.
In der vorliegenden Studie sollten daher die Lernvoraussetzungen von Kindern mit Migrationshintergrund in den mathematischen Basiskompetenzen und im selbstregulierten Lernen überprüft werden. Im Anschluss hieran sollte erprobt werden, ob sich die Kombination aus einem Training zur Förderung mathematischer Basiskompetenzen sowie einem Programm zur Förderung selbstregulierten Lernens als Unterrichtskonzept für den Anfangsunterricht mit Kindern mit Migrationshintergrund eignet und hiermit die Disparitäten in den Lernvoraussetzungen der migrierten Kinder ausgeglichen werden können. Hierfür wurde das ursprünglich für den vorschulischen Einsatz konzipierte Trainingsprogramm „Mengen, zählen, Zahlen“ (MZZ, Krajewski, Nieding & Schneider 2007) sowie ein von Otto (2007) ausgearbeitetes Konzept mit selbstregulativen Inhalten (SRL) für den unterrichtsintegrierten Einsatz im Erstunterricht adaptiert. Für die Teilnahme an der Studie konnten 30 Grundschulklassen rekrutiert werden. 517 Schüler[innen] wurden klassenweise einer von drei Versuchsbedingungen zugeordnet: (1) Der ersten Experimentalgruppe, in der die Trainingskombination in der Reihenfolge erst SRL, dann MZZ durchgeführt wurde (EGSRL+MZZ) oder (2) der zweiten Experimentalgruppe, die die Trainingskombination in der umgekehrten Reihenfolge (EGMZZ+SRL) erhielt oder (3) der Kontrollgruppe (KG), in der der reguläre Mathematikunterricht erfolgte. Die Durchführung der Trainingskombination wurde von den jeweiligen Mathematiklehrkräften vorgenommen. Vor der Implementierung der Trainingsprogramme erfolgte eine Erfassung der mathematischen Basiskompetenzen, der Fähigkeiten im selbstregulierten Lernen sowie der Fähigkeiten im Wortverständnis. Zur Überprüfung der Wirksamkeit wurden im Anschluss an die Durchführung der Trainingskombination diese Fähigkeiten erneut erhoben. Zudem wurde die Transferwirkung auf die Fähigkeiten im Basisrechnen untersucht. Ein halbes Jahr später erfolgte eine Follow-up-Untersuchung, bei der abermals die Fähigkeiten im selbstregulierten Lernen sowie der Transfer auf das Basisrechnen und die curriculare Mathematikleitung erfasst wurden.
Die Ergebnisse offenbarten für Kinder mit Migrationshintergrund ein schlechteres Vorwissen in den mathematischen Basiskompetenzen. Hinsichtlich der Fähigkeiten im selbstregulierten Lernen konnten keine Unterschiede gefunden werden. Die Ergebnisse des Posttests konnten einen größeren Kompetenzzuwachs in den mathematischen Basiskompetenzen bei den Kindern mit Migrationshintergrund der ersten Experimentalgruppe (EGSRL+MZZ) im Vergleich zu den Kindern mit Migrationshintergrund der Kontrollgruppe nachweisen. Zudem zeigten sich positive Transfereffekte auf das Basisrechnen. Transfereffekte auf die curriculare Mathematikleistung wurden bei den Kindern mit Migrationshintergrund dagegen nicht ersichtlich. Hinsichtlich der Fähigkeiten im selbstregulierten Lernen ließen sich bei den Kindern mit Migrationshintergrund keine Trainingseffekte aufdecken. In Bezug auf die Kompensation der lückenhaften Lernvoraussetzungen in den mathematischen Basiskompetenzen bei Kindern mit Migrationshintergrund konnte für die erste Experimentalgruppe (EGSRL+MZZ) ein höherer Lernzuwachs bei Kindern nicht deutscher Herkunft festgestellt werden. Bei der zweiten Experimentalgruppe (EGMZZ+SRL) zeigten sich zwar keine Unterschiede zwischen Kindern mit und ohne Migrationshintergrund, doch es offenbarte sich, dass Kinder mit deutscher Muttersprache von der Trainingskombination im Hinblick auf ihre mathematischen Basiskompetenzen mehr profitieren. Die Ergebnisse verweisen auf die Bedeutung der sprachlichen Fähigkeiten bei der entwicklungsorientierten Förderung mathematischer Kompetenzen und werden vor dem Hintergrund einer Ausarbeitung zu einem flächendeckend einsetzbaren Unterrichtskonzept diskutiert.
Surface water can contain a complex mixture of organic micropollutants (i.e. residues of pharmaceuticals or biocides). Conventional wastewater treatment plants (WWTPs) do not completely remove a broad range of anthropogenic chemicals and therefore represent a leading point source. To upgrade WWTPs, technical solutions based on oxidative and sorptive processes have been developed and successfully implemented. Acknowledging these substantial advances, this thesis focuses on another key topic and aims to investigate whether improved biological treatment processes likewise effectively remove anthropogenic micropollutants from wastewater. The work conducted on this topic was part of two European research projects (ATHENE, ENDETECH).
The ATHENE project aimed to go beyond the state-of-the-art by developing biological wastewater treatment processes that exploit the full potential of biodegradation. With the objective to explore the potential of complementary strictly anaerobic conditions within the biological wastewater treatment, combinations of aerobic and anaerobic treatments on site of a WWTP were implemented. Based on pre-experiments, two promising treatment combinations were selected for a more comprehensive evaluation. An aerobic treatment was paired with an anaerobic pre-treatment under iron-reducing conditions, and an activated sludge treatment was combined with an anaerobic post-treatment under substrate-limiting conditions. For the evaluation of these processes, an effect-based assessment was applied and combined with chemical data of 31 selected target organic micropollutants as well as ten metabolites. To assess the removal of endocrine disrupting chemicals (EDCs), yeast based reporter gene assays covering seven receptor-mediated mechanisms of action including (anti-)estrogenicity, (anti-) androgenicity, retinoid-like, and dioxin-like activity were conducted. Furthermore, the removal of unspecific toxicity (Microtox assay) and oxidative stress response as a marker for reactive toxicity (AREc32 assay) were analyzed to cover micropollutants acting via a non-specific mechanism of action. Moreover, to assess toxicity of the whole effluent in vivo, standardized in vivo bioassays with four aquatic model species (Desmodesmus subspicatus, Daphnia magna, Lumbriculus variegatus, Potamopyrgus antipodarum) were performed.
The combination of aerobic and anaerobic treatments resulted in a low additional removal of the selected target organic micropollutants (by 14-17%). In contrast, the removal of endocrine and dioxin-like activities (by 17-75%) and non-specific in vitro toxicities (by 27-60%) was significantly enhanced. Compared to technical solutions (i.e. ozonation), the combination with an anaerobic pre-treatment under iron-reducing conditions was likewise effective in removing the estrogenic activity as well as the unspecific toxicity, whereas anti-androgenic activity and dioxin-like activity were less effectively removed. Exposure to effluents of the conventional activated sludge treatment did not induce adverse in vivo effects in the investigated aquatic model species. Accordingly, no further improvement in water quality could be observed. In conclusion, the combination of aerobic and anaerobic treatment processes significantly enhanced the removal of specific and non-specific in vitro toxicities. Thus, an optimization of the biological wastewater treatment can lead to a substantially improved detoxification. These capacities of a treatment technology can only be uncovered by complementary effect-based measurements.
The global objective of the ENDETECH project was to develop a biotechnological solution to eliminate recalcitrant pharmaceuticals in wastewater direct from sites, where high loads are expected (i.e. hospitals). For this purpose, laccase, an enzyme mainly found in wood decaying fungi, was immobilized on ceramic membranes for application in bioreactors. In a proof of principle experiment, the performance of immobilized laccase in removing a mixture of 38 antibiotics without and in combination with a natural mediator (syringaldehyde; SYR) was investigated. For the evaluation of the enzymatic membrane bioreactors, chemical data on the elimination of the selected target antibiotics was combined with the outcomes of two in vitro bioassays. Growth inhibition tests with an antibiotic sensitive Bacillus subtilis strain were conducted to assess the residual antibiotic activity of the effluents, and Microtox assays were performed to detect a potential formation of toxic by-products.
The treatment by laccase without SYR did not reduce the load of antibiotics significantly. In contrast, in combination with a SYR concentration of 10 µmol L-1, 26 out of 38 antibiotics were removed by >50% after 24 h treatment. Moreover, increasing the SYR concentration to 1000 µmol L-1 resulted in a further improvement of the antibiotic removal. 32 out of 38 antibiotics were removed by over 50%, whereby 17 were almost completely eliminated (>90%). However, the treatment with laccase in combination with SYR resulted in a time-dependent increase of unspecific toxicity. While SYR alone did not affect B. subtilis, the combination of laccase with SYR led to a strong time-dependent growth inhibition up to 100%. Similar to that, a time-dependent increase of unspecific toxicity in the Microtox assay was observed. In conclusion, the laccase-mediator process successfully degrades a broad spectrum of antibiotics and thus represents a promising technology to treat wastewater from sites, where high loads are expected. However, further research is required to reduce the formation of unspecific toxicity before an implementation of this technology can be considered.
The theory of strong interactions — Quantum Chromodynamics (QCD) — is well-defined mathematically. However, direct applications of this theory to experiment are rather limited due to significant technical obstacles. Even some general features of QCD remain unclear to date.
Hence, phenomenological input is important and needed for practical applications, e.g. for theoretical analysis of the heavy-ion collision experiments. In this thesis the role of hadronic interactions is studied in the hadron resonance gas (HRG) model — a popular model for the confined phase of QCD. The description of hadronic interactions is based on the famous van der Waals (VDW) equation and its quantum statistical generalization. While this is not the conventional choice for nuclear/hadronic physicspplications, the simplicity of the VDW approach makes it extremely useful.
In particular, this framework allows to include the two most basic ingredients of hadron-hadron interaction: the short-range repulsion, modeled by excluded-volume (EV) corrections, and the intermediate range attraction. The first part of the thesis considers just the repulsive EV interactions between hadrons. A hitherto unknown, but surprisingly strong sensitivity of the long known thermal fits to heavy-ion hadron yield data to the choice of hadron eigenvolumes is uncovered. It challenges the robustness of the chemical freeze-out temperature and baryochemical potential determination from the thermal fits. However, at the same time, the extracted value of the entropy per baryon is found to be a robust observable which depends weakly on this systematic uncertainty of the HRG model.
A Monte Carlo procedure to treat EV interactions in HRG is also introduced in this thesis. It allows to study simultaneous effects of EV and of exact charge conservation in HRG for the first time. Generalizations of the classical VDW equation are required for its applications in hadronic physics. he grand canonical ensemble (GCE) formulation of the classical VDW equation is presented. Remarkably, this important aspect of the VDW equation was not discovered before. The GCE formulation yields the analytic structure of the critical fluctuations, both in the vicinity of and far off the critical point. These critical fluctuations are presently actively being used as probes for the QCD critical point. Another extension is the hitherto undiscovered generalization of the VDW equation to include quantum Bose-Einstein and Fermi-Dirac statistics. It is performed for both single-component and multi-component fluids. The Fermi-Dirac VDW equation is applied for the first time. It is used to describe nucleons and basic properties of nuclear matter. The quantum statistical generalization of the VDW equation developed in this work is quite general, and can be applied for any fluid. Thus, its applications are not restricted to QCD physics, but may also find themselves in chemistry and/or industry. The quantum statistical VDW equation is used to describe baryonic interactions in full HRG. The VDW parameters $a$ and $b$ are fixed to the nuclear ground state and the predictions of the model are confronted with lattice QCD calculations. The inclusion of baryonic interactions leads to a qualitatively different behavior of the fluctuations of conserved charges in the crossover region. In many cases it resembles the lattice data. These results suggest that hadrons do not melt quickly with increasing temperature, as one could conclude on the basis of the common simple ideal HRG model. Calculations at finite chemical potentials show that the nuclear liquid-gas transition manifests itself by non-trivial fluctuations of the net baryon number in heavy ion collisions. In the final part of the thesis the pure glue initial scenario for high-energy hadron and heavy-ion collisions is explored. This scenario is shown not to spoil the existing agreement of the hadronic and electromagnetic observables description in Pb+Pb collisions at energies available at the CERN Large Hadron Collider. Hydrodynamic calculations suggest that collisions of small-sized nuclei at lower collision energies available at the BNL Relativistic Heavy Ion Collider are promising in the search for the traces of the chemically non-equilibrium gluon-dominated phase transition.
Colorectal cancer (CRC) has the third highest incidence and the fourth highest mortality rate worldwide and represents a substantial health care burden and affects the life of millions of people. CRC is a genetic disease caused by the stepwise accumulation of genetic alterations. The initiating event in colorectal carcinogenesis is the aberrant activation of the WNT pathway, but other pathways are also commonly deregulated, including the PI3K/AKT pathway. A number of previous studies using genetically engineered mouse models aimed at dissecting the exact role of PI3K/AKT pathway in CRC, but have yielded in rather conflicting results. Despite the inconsistent results, these studies already put forward the idea that PI3K/AKT signaling in combination with other genetic events might substantially contribute to tumor progression.
Since the PI3K/AKT pathway is frequently activated in CRC, it represents an ideal candidate for therapeutic intervention. Although extensive efforts had led to the development of numerous inhibitors targeting the PI3K/AKT pathway, the diversity of genetic alterations can challenge the identification of the most effective therapeutic targets. Therefore, the discovery of shared tumor-promoting mechanisms downstream of these genetic alterations might unravel new biomarkers and druggable targets. The aim of this study was to elucidate the precise role of PI3K/AKT pathway during the course of colorectal carcinogenesis and to decipher novel pro-tumorigenic molecular mechanisms downstream of PI3K/AKT activation that can be used for therapeutic intervention.
To obtain a better insight into the role of the PI3K/AKT pathway during colorectal carcinogenesis, mice expressing an oncogenic variant of AKT1 (AktE17K) specifically in the intestinal epithelial cells (IEC) were used. At the age of 6 months untreated AktE17K mice showed clearly perturbed intestinal homeostasis, but no tumor formation. To induce colonic tumorigenesis, AktE17K mice were subjected to treatment with the colonic carcinogen azoxymethane (AOM). In response to AOM, AktE17K mice developed invasive but nonmetastatic tumors, which showed strong nuclear accumulation of TP53. To investigate the role of PI3K/AKT signaling specifically in CRC progression, AktE17K mice were crossed to TP53- deficient mice (Tp53ΔIEC). Unlike AktE17K mice, untreated Tp53ΔIECAktE17K, developed highly invasive small intestinal tumors by the age of 6 months. To investigate the role of AKT hyperactivation in colonic tumor progression, Tp53ΔIECAktE17K mice were subjected to AOM treatment. AKT hyperactivation significantly enhanced tumor progression and induced metastatic dissemination.
To get a better insight how AKT signaling can promote tumor progression, whole tumor tissues from AOM-treated Tp53ΔIEC and Tp53ΔIECAktE17K mice were subjected to next generation mRNA sequencing and phospho-proteomic analysis by mass spectrometry. Both analyses indicated that AKT hyperactivation expands the inflammatory tumor microenvironment and upregulates pathways associated with invasion and metastasis. Importantly, Gene Set Enrichment Analysis revealed that AOM-induced colon tumors of Tp53ΔIECAktE17K animals, are highly similar in their gene expression profile to the CMS4 subtype of human CRC, which is associated with worse overall- and relapse-free survival7 . Gene expression analysis also suggested elevated NOTCH signaling in the Tp53ΔIECAktE17K tumors. Interestingly, while the expression of Notch3 mRNA was increased in the tumors of Tp53ΔIECAktE17K mice, the expression of the other NOTCH receptors was unaffected by AKT hyperactivation. In vitro experiments using TP53-deficient mouse tumor organoids with hyperactive AKT signaling confirmed the direct, tumor cell-intrinsic link between AKT activation and increased Notch3 expression. Moreover, inhibition of EZH2 mimicked the effect of AKT hyperactivation on Notch3 expression, suggesting that AKT regulates Notch3 via an epigenetic mechanism.
Knock-down of Notch3 in TP53-deficient mouse tumor organoids with hyperactive AKT signaling resulted in differential regulation of several pathways with potential role in invasion and metastasis and in cell death and survival. Subsequent in vivo experiments confirmed the role of NOTCH3 signaling in CRC progression. Treatment of AOM-induced Tp53ΔIECAkt E17K mice with a NOTCH3 antagonistic antibody or the γ-secretase inhibitor DAPT significantly reduced invasion and metastasis. Importantly, NOTCH3 expression was also found to be associated with human CRC progression, suggesting that NOTCH3 represent a valid target for the treatment of CRC. This work, using genetically engineered mouse models and advanced in vitro techniques, has demonstrated a strong tumor promoting role for PI3K/AKT signaling in CRC progression and has identified NOTCH3 signaling as a potential therapeutic target downstream of the PI3K/AKT pathway.