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Impact of rescanning and repositioning on radiomic features employing a multi-object phantom in magnetic resonance imaging

  • Our purpose was to analyze the robustness and reproducibility of magnetic resonance imaging (MRI) radiomic features. We constructed a multi-object fruit phantom to perform MRI acquisition as scan-rescan using a 3 Tesla MRI scanner. We applied T2-weighted (T2w) half-Fourier acquisition single-shot turbo spin-echo (HASTE), T2w turbo spin-echo (TSE), T2w fluid-attenuated inversion recovery (FLAIR), T2 map and T1-weighted (T1w) TSE. Images were resampled to isotropic voxels. Fruits were segmented. The workflow was repeated by a second reader and the first reader after a pause of one month. We applied PyRadiomics to extract 107 radiomic features per fruit and sequence from seven feature classes. We calculated concordance correlation coefficients (CCC) and dynamic range (DR) to obtain measurements of feature robustness. Intraclass correlation coefficient (ICC) was calculated to assess intra- and inter-observer reproducibility. We calculated Gini scores to test the pairwise discriminative power specific for the features and MRI sequences. We depict Bland Altmann plots of features with top discriminative power (Mann–Whitney U test). Shape features were the most robust feature class. T2 map was the most robust imaging technique (robust features (rf), n = 84). HASTE sequence led to the least amount of rf (n = 20). Intra-observer ICC was excellent (≥ 0.75) for nearly all features (max–min; 99.1–97.2%). Deterioration of ICC values was seen in the inter-observer analyses (max–min; 88.7–81.1%). Complete robustness across all sequences was found for 8 features. Shape features and T2 map yielded the highest pairwise discriminative performance. Radiomics validity depends on the MRI sequence and feature class. T2 map seems to be the most promising imaging technique with the highest feature robustness, high intra-/inter-observer reproducibility and most promising discriminative power.
Metadaten
Verfasserangaben:Simon BernatzORCiDGND, Yauheniya Zhdanovich, Jörg AckermannORCiDGND, Ina KochORCiD, Peter Johannes WildORCiDGND, Daniel Pinto dos Santos, Thomas J. VoglORCiDGND, Benjamin KaltenbachGND, Nicolas Rosbach
URN:urn:nbn:de:hebis:30:3-635715
DOI:https://doi.org/10.1038/s41598-021-93756-x
ISSN:2045-2322
Titel des übergeordneten Werkes (Englisch):Scientific reports
Verlag:Macmillan Publishers Limited
Verlagsort:[London]
Dokumentart:Wissenschaftlicher Artikel
Sprache:Englisch
Datum der Veröffentlichung (online):09.07.2021
Datum der Erstveröffentlichung:09.07.2021
Veröffentlichende Institution:Universitätsbibliothek Johann Christian Senckenberg
Datum der Freischaltung:16.03.2022
Freies Schlagwort / Tag:Diagnostic markers; Preclinical research; Predictive markers; Prognostic markers; Translational research
Jahrgang:11
Ausgabe / Heft:art. 14248
Seitenzahl:13
Erste Seite:1
Letzte Seite:13
Bemerkung:
Open Access funding enabled and organized by Projekt DEAL. This work was supported in part by the LOEWE Center Frankfurt Cancer Institute (FCI) funded by the Hessen State Ministry for Higher Education, Research and the Arts [III L 5 - 519/03/03.001 - (0015)].
HeBIS-PPN:493893970
Institute:Informatik und Mathematik
Medizin
DDC-Klassifikation:0 Informatik, Informationswissenschaft, allgemeine Werke / 00 Informatik, Wissen, Systeme / 004 Datenverarbeitung; Informatik
6 Technik, Medizin, angewandte Wissenschaften / 61 Medizin und Gesundheit / 610 Medizin und Gesundheit
Sammlungen:Universitätspublikationen
Lizenz (Deutsch):License LogoCreative Commons - Namensnennung 4.0