Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle

  • Tuberaceae is one of the most diverse lineages of symbiotic truffle-forming fungi. To understand the molecular underpinning of the ectomycorrhizal truffle lifestyle, we compared the genomes of Piedmont white truffle (Tuber magnatum), Périgord black truffle (Tuber melanosporum), Burgundy truffle (Tuber aestivum), pig truffle (Choiromyces venosus) and desert truffle (Terfezia boudieri) to saprotrophic Pezizomycetes. Reconstructed gene duplication/loss histories along a time-calibrated phylogeny of Ascomycetes revealed that Tuberaceae-specific traits may be related to a higher gene diversification rate. Genomic features in Tuber species appear to be very similar, with high transposon content, few genes coding lignocellulose-degrading enzymes, a substantial set of lineage-specific fruiting-body-upregulated genes and high expression of genes involved in volatile organic compound metabolism. Developmental and metabolic pathways expressed in ectomycorrhizae and fruiting bodies of T. magnatum and T. melanosporum are unexpectedly very similar, owing to the fact that they diverged ~100 Ma. Volatile organic compounds from pungent truffle odours are not the products of Tuber-specific gene innovations, but rely on the differential expression of an existing gene repertoire. These genomic resources will help to address fundamental questions in the evolution of the truffle lifestyle and the ecology of fungi that have been praised as food delicacies for centuries.
Author:Claude Murat, Thibaut Payen, Benjamin Noel, Alan Kuo, Emmanuelle Morin, Juan Chen, Annegret Kohler, Krisztina Krizsán, Raffaella Balestrini, Corinne Da Silva, Barbara Montanini, Mathieu Hainaut, Elisabetta Levati, Kerrie W. Barry, Beatrice Belfiori, Nicolas Cichocki, Alicia Clum, Rhyan B. Dockter, Laure Fauchery, Julie Guy, Mirco Iotti, François Le Tacon, Erika A. Lindquist, Anna Lipzen, Fabienne Malagnac, Antonietta Mello, Virginie Molinier, Shingo Miyauchi, Julie Poulain, Claudia Riccioni, Andrea Rubini, Yaron Sitrit, Richard Splivallo, Stefanie Traeger, Mei Wang, Lucia Žifčáková, Daniel Wipf, Alessandra Zambonelli, Francesco Paolocci, Minou Nowrousian, Simone Ottonello, Petr Baldrian, Joseph W. Spatafora, Bernard Henrissat, László Nagy, Jean-Marc Aury, Patrick Wincker, Igor V. Grigoriev, Paola Bonfante, Francis Martin
Pubmed Id:
Parent Title (English):Nature ecology & evolution
Publisher:Nature Publishing Group
Place of publication:London
Document Type:Article
Year of Completion:2018
Date of first Publication:2018/11/12
Publishing Institution:Universitätsbibliothek Johann Christian Senckenberg
Release Date:2019/05/20
Tag:Comparative genomics; Evolution; Fungi; Gene expression profiling; Plant symbiosis
Page Number:12
First Page:1956
Last Page:1965
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Institutes:Biowissenschaften / Biowissenschaften
Dewey Decimal Classification:5 Naturwissenschaften und Mathematik / 57 Biowissenschaften; Biologie / 570 Biowissenschaften; Biologie
Licence (German):License LogoCreative Commons - Namensnennung 4.0